HHsearch alignment for GI: 254780552 and conserved domain: PRK10820
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional.
Probab=99.57 E-value=1.2e-13 Score=102.91 Aligned_cols=206 Identities=17% Similarity=0.195 Sum_probs=127.2
Q ss_pred CHHHHCCHHHHHHHHHHHH-HHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCCCCCCCH---HHH--
Q ss_conf 8778239799999999999-9866146776707997378855778999999861---898531257644334---676--
Q gi|254780552|r 26 TLEEFTGQVEACSNLKVFI-EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---GVNFRSTSGPVIAKA---GDL-- 96 (334)
Q Consensus 26 ~l~dviGQ~~~~~~l~~~i-~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s~~~~~~~---~dl-- 96 (334)
T Consensus 202 ~F~~iig~S~~m~~v~~~a~r~A~----~d~pVLI~GEsGTGKellAraIH~~S~R~~~pFv~vnC~alp~~l~eseLFG 277 (513)
T PRK10820 202 AFSQIVAVSPKMKHVVEQARKLAM----LSAPLLITGDTGTGKDLFAYACHLASPRAKKPYLALNCASIPEDAVESELFG 277 (513)
T ss_pred CHHHHEECCHHHHHHHHHHHHHHC----CCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHCC
T ss_conf 877751089999999999999859----8998899898982499999999966887899826888998996789998638
Q ss_pred ------HHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCC------
Q ss_conf ------66666410163788875761698999999998634751002567876520004667400552045543------
Q gi|254780552|r 97 ------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG------ 164 (334)
Q Consensus 97 ------~~~~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~------ 164 (334)
T Consensus 278 ~a~~~~~G~fe~A~-gGTLfLdEI~~l~~~~Q~kLLr~Lq~~~~~r-vG~~---~~~~~---dvRiIaaT~~dL~~lv~~ 349 (513)
T PRK10820 278 HAPEGKKGFFEQAN-GGSVLLDEIGEMSPRMQAKLLRFLNDGTFRR-VGED---HEVHV---DVRVICATQKNLVELVQK 349 (513)
T ss_pred CCCCCCCCCEEECC-CCEEEEECHHHCCHHHHHHHHHHHHCCEEEE-CCCC---CEEEE---EEEEEECCCHHHHHHHHC
T ss_conf 76668897557858-9889997836599999999999986897996-5998---53567---789996265309999872
Q ss_pred -CCCHHHHHCCC-CEEECCCCC--HHHHHHH----HHHHHHHCC---CHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHH
Q ss_conf -35545442012-067326454--7999998----777654121---011111112332022-10156788777543334
Q gi|254780552|r 165 -LLTNPLQDRFG-IPIRLNFYE--IEDLKTI----VQRGAKLTG---LAVTDEAACEIAMRS-RGTPRIAGRLLRRVRDF 232 (334)
Q Consensus 165 -~l~~~l~sR~~-~~~~~~~~~--~~el~~i----l~~~~~~~~---i~~~~~al~~ia~~s-~Gd~R~AlnlLe~v~d~ 232 (334)
T Consensus 350 g~FReDLyyRL~v~~I~lPpLReR~eDI~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNVREL~n~iera~~~ 429 (513)
T PRK10820 350 GLFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLSADLSTVLTRYGWPGNVRQLKNAIYRALTQ 429 (513)
T ss_pred CCCCHHHHHHHHCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 98508899986167255888344655699999999999999759998984799999997089997999999999999995
Q ss_pred HHHHCCCCCCHHHH
Q ss_conf 55415886427787
Q gi|254780552|r 233 AEVAHAKTITREIA 246 (334)
Q Consensus 233 a~~~~~~~i~~~~~ 246 (334)
T Consensus 430 ~---~g~~i~~~di 440 (513)
T PRK10820 430 L---EGYELRPQDI 440 (513)
T ss_pred C---CCCCCCHHHC
T ss_conf 7---9985349982