HHsearch alignment for GI: 254780552 and conserved domain: PRK11034
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional.
Probab=99.80 E-value=5.7e-19 Score=135.50 Aligned_cols=206 Identities=23% Similarity=0.310 Sum_probs=122.6
Q ss_pred HCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC----------CCCCCCCCC-CC
Q ss_conf 5078987782397999999999999866146776707997378855778999999861----------898531257-64
Q gi|254780552|r 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL----------GVNFRSTSG-PV 89 (334)
Q Consensus 21 ~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l----------~~~~~~~s~-~~ 89 (334)
T Consensus 179 ~Ar~gklDPviGR~~Ei~r~i~iL~-Rr~KN----NpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~~Ldl~~L 253 (758)
T PRK11034 179 LARVGGIDPLIGREKELERAIQVLC-RRRKN----NPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL 253 (758)
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHH-HHCCC----CCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHH
T ss_conf 9982899987384899999999997-63258----960216999869999999999997389976558988998458778
Q ss_pred CCC---HHHH----HHHHHHH--HCCCHHHHHHHHHCC---------HHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCC
Q ss_conf 433---4676----6666641--016378887576169---------899999999863475100256787652000466
Q gi|254780552|r 90 IAK---AGDL----AALLTNL--EDRDVLFIDEIHRLS---------IIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151 (334)
Q Consensus 90 ~~~---~~dl----~~~~~~~--~~~~vlfiDEihrl~---------~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~ 151 (334)
T Consensus 254 iAGtkyRGefEeRlk~vi~e~~~~~~~ILFIDEiH~ivGaG~~~gg~~DaaNlLKP~LarG~l----------------- 316 (758)
T PRK11034 254 LAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKI----------------- 316 (758)
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC-----------------
T ss_conf 616864154999999999999857985999804344226887677764678874578746972-----------------
Q ss_pred CCCEEEECCCCCC--C-C--CHHHHHCCCCEEECCCCCHHHHHHHHHHHH----HHCCCHHHHHHHHHHHCCC------C
Q ss_conf 7400552045543--3-5--545442012067326454799999877765----4121011111112332022------1
Q gi|254780552|r 152 SRFTLIAATTRVG--L-L--TNPLQDRFGIPIRLNFYEIEDLKTIVQRGA----KLTGLAVTDEAACEIAMRS------R 216 (334)
Q Consensus 152 ~~f~lI~ATt~~~--~-l--~~~l~sR~~~~~~~~~~~~~el~~il~~~~----~~~~i~~~~~al~~ia~~s------~ 216 (334)
T Consensus 317 ---~~IgaTT~~EYrk~iekD~AL~RRFq~-V~V~EPs~e~t~~IL~gl~~~yE~~H~v~~~d~al~~av~Ls~rYi~dr 392 (758)
T PRK11034 317 ---RVIGSTTYQEFSNIFEKDRALARRFQK-IDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDR 392 (758)
T ss_pred ---EEEEECCHHHHHHCCCCCHHHHHCCCE-EECCCCCHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHCCC
T ss_conf ---399943779987503214788842826-5318999899999999899987323695774389999999997650268
Q ss_pred CCHHHHHHHHHHHHHHHH----HHCCCCCCHHHHHHHHHH
Q ss_conf 015678877754333455----415886427787876542
Q gi|254780552|r 217 GTPRIAGRLLRRVRDFAE----VAHAKTITREIADAALLR 252 (334)
Q Consensus 217 Gd~R~AlnlLe~v~d~a~----~~~~~~i~~~~~~~~l~~ 252 (334)
T Consensus 393 ~lPDKAIdllDea~a~~~l~~~~~~~~~v~~~di~~vv~~ 432 (758)
T PRK11034 393 HLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVAR 432 (758)
T ss_pred CCCHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHH
T ss_conf 8961999999999888751345663165899999999987