HHsearch alignment for GI: 254780552 and conserved domain: PRK11034

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional.
Probab=99.73  E-value=2.9e-16  Score=118.98  Aligned_cols=180  Identities=23%  Similarity=0.312  Sum_probs=122.5

Q ss_pred             HHHCCHHHHHHHHHHHHHHHH----HCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCH---HHHH---
Q ss_conf             782397999999999999866----146776707997378855778999999861898531257644334---6766---
Q gi|254780552|r   28 EEFTGQVEACSNLKVFIEAAK----ARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA---GDLA---   97 (334)
Q Consensus        28 ~dviGQ~~~~~~l~~~i~a~~----~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~---~dl~---   97 (334)
T Consensus       458 ~~viGQ~~Ai~~v~~ai~~~raGL~~~~rPigsFlf~GPTGVGKTElak~LA~~L~~~lir~DMSEy~e~hsvsrLiGaP  537 (758)
T PRK11034        458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAP  537 (758)
T ss_pred             HHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHCCCC
T ss_conf             78745499999999999998638889999705899978998777999999999986677214266531201477744899


Q ss_pred             ---------HHHH---HHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCC--
Q ss_conf             ---------6666---41016378887576169899999999863475100256787652000466740055204554--
Q gi|254780552|r   98 ---------ALLT---NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV--  163 (334)
Q Consensus        98 ---------~~~~---~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~--  163 (334)
T Consensus       538 PGYVGy~eGG~Lte~Vr~~PysVvL~DEIEKAhpdV~nilLQvlD~G~LtD~~Gr-------~vdF~N-tiIImTSN~Ga  609 (758)
T PRK11034        538 PGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGR-------KADFRN-VVLVMTTNAGV  609 (758)
T ss_pred             CCCCCCCCCCCCCHHHHHCCCEEEEEHHHHHHCHHHHHHHHHHCCCCCCCCCCCC-------EEECEE-EEEEEECCCCH
T ss_conf             8666767777012878739877997336756398999988732377830179999-------884400-19998256174


Q ss_pred             ------------------------CCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHH---------HHCCCHHHHHHHHH
Q ss_conf             ------------------------335545442012067326454799999877765---------41210111111123
Q gi|254780552|r  164 ------------------------GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA---------KLTGLAVTDEAACE  210 (334)
Q Consensus       164 ------------------------~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~---------~~~~i~~~~~al~~  210 (334)
T Consensus       610 ~~~~~~~~gf~~~~~~~~~~~~l~~~F~PEFlNRiD~ii~F~~L~~~~l~~Iv~~~l~~l~~rL~~~~i~l~~~~~a~~~  689 (758)
T PRK11034        610 RETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDW  689 (758)
T ss_pred             HHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHH
T ss_conf             87864214755420359999999954798677236747863889999999999999999999999789859988999999


Q ss_pred             HHCCC
Q ss_conf             32022
Q gi|254780552|r  211 IAMRS  215 (334)
Q Consensus       211 ia~~s  215 (334)
T Consensus       690 l~~~g  694 (758)
T PRK11034        690 LAEKG  694 (758)
T ss_pred             HHHHC
T ss_conf             99848