HHsearch alignment for GI: 254780552 and conserved domain: PRK12323
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional.
Probab=100.00 E-value=0 Score=301.44 Aligned_cols=210 Identities=22% Similarity=0.277 Sum_probs=176.5
Q ss_pred HHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHCCC-----C-------C-
Q ss_conf 57875078987782397999999999999866146776707-99737885577899999986189-----8-------5-
Q gi|254780552|r 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGV-----N-------F- 82 (334)
Q Consensus 17 ~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~-Lf~GPpG~GKTtlA~iiA~~l~~-----~-------~- 82 (334)
T Consensus 5 vlark~RP~~F~~~vGQ~~v~~~l~na~~~~r-----~~haylf~G~rGvGKTt~ari~Ak~lnc~~~~~~~g~~~~pcg 79 (721)
T PRK12323 5 VLARKWRPRDFTTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGPDGEGGITAQPCG 79 (721)
T ss_pred HHHHHHCCCCHHHHCCCHHHHHHHHHHHHCCC-----CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 67654079866553285999999999997199-----7544750279988898999999999768998667898788787
Q ss_pred -----CCC-----------CCCCCCCHHHHHHHHHHHH------CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf -----312-----------5764433467666666410------163788875761698999999998634751002567
Q gi|254780552|r 83 -----RST-----------SGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 (334)
Q Consensus 83 -----~~~-----------s~~~~~~~~dl~~~~~~~~------~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~ 140 (334)
T Consensus 80 ~C~~C~~i~~g~~~d~~EiDaas~~~v~~~r~l~~~~~y~P~~~~~KvyiiDevhmls~~afnalLKtlEe--------- 150 (721)
T PRK12323 80 QCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDQAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEE--------- 150 (721)
T ss_pred CCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCC---------
T ss_conf 76546877568987647743676788899999998545588766446999854000589999999984017---------
Q ss_pred CCCCCEEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf 87652000466740055204554335545442012067326454799999877765412101111111233202210156
Q gi|254780552|r 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220 (334)
Q Consensus 141 ~~~a~~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R 220 (334)
T Consensus 151 ---------PP~hv~FilaTT~~~Kip~TilSRc-~~f~~~~~~~~~i~~~l~~i~~~E~i~~~~~al~~ia~~a~Gs~R 220 (721)
T PRK12323 151 ---------PPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGQEGIGHEGNALRLLAQAAHGSMR 220 (721)
T ss_pred ---------CCCCEEEEEECCCHHHCCHHHHHHH-HHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHH
T ss_conf ---------9755389994386344858898776-542347899999999999999983997799999999997589647
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 7887775433345541588642778787654210
Q gi|254780552|r 221 IAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 (334)
Q Consensus 221 ~AlnlLe~v~d~a~~~~~~~i~~~~~~~~l~~~~ 254 (334)
T Consensus 221 DalslldQ----aia~~~g~~~~~~v~~mlg~~d 250 (721)
T PRK12323 221 DALSLTDQ----AIAYSAGNVSEEAVRGMLGAID 250 (721)
T ss_pred HHHHHHHH----HHHHCCCCCCHHHHHHHHCCCC
T ss_conf 68889999----9986589626999999868887