HHsearch alignment for GI: 254780552 and conserved domain: PRK12402
>PRK12402 replication factor C small subunit 2; Reviewed.
Probab=100.00 E-value=1.5e-43 Score=285.84 Aligned_cols=191 Identities=22% Similarity=0.292 Sum_probs=154.8
Q ss_pred CHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCC-----CCCCCCCC
Q ss_conf 0578750789877823979999999999998661467767079973788557789999998618985-----31257644
Q gi|254780552|r 16 DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF-----RSTSGPVI 90 (334)
Q Consensus 16 ~~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~-----~~~s~~~~ 90 (334)
T Consensus 3 ~lWveKYRP~~~~dvvGq~~i~~~L~~~~~~-----~~~phlLf~GPpG~GKTt~A~~lA~~l~~~~~~~~~~~~nasd~ 77 (337)
T PRK12402 3 MLWTEKYRPSLFEDILGQESVVDHLSALAAS-----GNLPHLVVYGPSGSGKTAAVRALARELYGDPWENNFTYFNVSDF 77 (337)
T ss_pred CCCCCCCCCCCHHHHCCCHHHHHHHHHHHHC-----CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCC
T ss_conf 8532141889799803979999999999977-----99876988892984899999999999679975678333116531
Q ss_pred -C------------------------CHHH-HHHHH---HHH----HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC
Q ss_conf -3------------------------3467-66666---641----0163788875761698999999998634751002
Q gi|254780552|r 91 -A------------------------KAGD-LAALL---TNL----EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 (334)
Q Consensus 91 -~------------------------~~~d-l~~~~---~~~----~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~ 137 (334)
T Consensus 78 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~i~~ii~~~a~~~p~~~~~KiiIlDEad~lt~~Aq~aLlk~lEe~~---- 153 (337)
T PRK12402 78 FDQGKKYLVEDPRFAHFYDDPKRKYKSVIDNFKHILKEYASMRPLSADYKLILFDNAEALREDAQQALRRIMERYS---- 153 (337)
T ss_pred CCCCCCEEECCCCHHHHHCCHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCC----
T ss_conf 1356400101664234420153327737899999999986148877880499970713179999999998874088----
Q ss_pred CCCCCCCCEEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
Q ss_conf 56787652000466740055204554335545442012067326454799999877765412101111111233202210
Q gi|254780552|r 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217 (334)
Q Consensus 138 ~~~~~~a~~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~G 217 (334)
T Consensus 154 --------------~~~~fIl~t~~~~~ii~tI~SRC~-~i~F~~~s~~~i~~~L~~I~~~E~i~~~~~~l~~ia~~s~G 218 (337)
T PRK12402 154 --------------ETCRFIFSTTQPSKLIPPIRSRCL-PLFFRPVPDDEIRSVLESIAAAEGVEISDDGLDLIAYYAEG 218 (337)
T ss_pred --------------CCEEEEEECCCCCCCCHHHHHHCE-EEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
T ss_conf --------------766998723864447524776244-54358989999999999999984999899999999998699
Q ss_pred CHHHHHHHHHHHH
Q ss_conf 1567887775433
Q gi|254780552|r 218 TPRIAGRLLRRVR 230 (334)
Q Consensus 218 d~R~AlnlLe~v~ 230 (334)
T Consensus 219 dlR~ain~Lq~~~ 231 (337)
T PRK12402 219 DLRKAILTLQLAA 231 (337)
T ss_pred CHHHHHHHHHHHH
T ss_conf 8999999999998