HHsearch alignment for GI: 254780552 and conserved domain: PRK13341
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed.
Probab=100.00 E-value=0 Score=553.79 Aligned_cols=279 Identities=29% Similarity=0.365 Sum_probs=238.6
Q ss_pred CCCHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf 12057875078987782397999999999999866146776707997378855778999999861898531257644334
Q gi|254780552|r 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA 93 (334)
Q Consensus 14 ~~~~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~ 93 (334)
T Consensus 14 ~~aPLA~rmRP~~Lde~vGQ~hllg~g~~Lrr~i~--~~~~~S~Il~GPPGtGKTTLA~iIA~~t~~~F~~lsA-v~sgv 90 (726)
T PRK13341 14 SEAPLADRLRPRTLEEFVGQDHILGEGRLLRRAIK--ADRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNA-VLAGV 90 (726)
T ss_pred CCCCCHHHHCCCCHHHHCCCHHHCCCCCHHHHHHH--CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEC-CCCCH
T ss_conf 26985686299987773595754289828999997--6999827888979999999999998874886799856-20377
Q ss_pred HHHHHHHHHHH-------CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCC-
Q ss_conf 67666666410-------1637888757616989999999986347510025678765200046674005520455433-
Q gi|254780552|r 94 GDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL- 165 (334)
Q Consensus 94 ~dl~~~~~~~~-------~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~- 165 (334)
T Consensus 91 kdlr~ii~~A~~~~~~~g~~tILFIDEIHRfNK~QQD~LLp~vE~G~i--------------------~LIGATTENP~F 150 (726)
T PRK13341 91 KDLRAEVDAAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGTV--------------------TLIGATTENPYF 150 (726)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCHHHHHHHHHHHCCCEE--------------------EEEEECCCCCCE
T ss_conf 999999999999987459965999862542588789987888606838--------------------999704789743
Q ss_pred -CCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHH-------CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf -554544201206732645479999987776541-------210111111123320221015678877754333455415
Q gi|254780552|r 166 -LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKL-------TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237 (334)
Q Consensus 166 -l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~-------~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~~~ 237 (334)
T Consensus 151 ~vn~ALlSR~~-vf~L~~L~~~dl~~il~rAl~d~~~g~~~~~i~i~~~al~~l~~~s~GDaR~aLN~LElav~~~~~~~ 229 (726)
T PRK13341 151 EVNKALVSRSR-LFRLKSLEDEDLHQLLKRALQDKERGYGDRNIDLEPEAEKHLVDVANGDARSLLNALELAVESTPPDE 229 (726)
T ss_pred EECHHHHHHCE-EEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 64298883234-66743899999999999998767432566787759899999999759739999999999997074576
Q ss_pred CC--CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHH
Q ss_conf 88--6427787876542100000046776889999997518662069999998287456746789999998343058718
Q gi|254780552|r 238 AK--TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315 (334)
Q Consensus 238 ~~--~i~~~~~~~~l~~~~id~~Gl~~~d~~~L~~l~~~~~~g~~~~~~isA~~ks~RgS~~daa~~yL~r~g~~~~~pr 315 (334)
T Consensus 230 ~~~~~i~~~~~~~~~~~~-----------------~~~YDk~GD~HYd~iSAfiKSiRGSDpDAALywLARMLeaGEDP~ 292 (726)
T PRK13341 230 DGVIHINLAIAEESIQQR-----------------AVLYDKEGDAHFDTISAFIKSLRGSDPDAALYWLARMVEAGEDPR 292 (726)
T ss_pred CCCEEECHHHHHHHHHHH-----------------HHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHH
T ss_conf 883443599999998566-----------------605687751788999999998654896789999999997599889
Q ss_pred --HHHHHHHHHHHCCCCCCC
Q ss_conf --999999888664888889
Q gi|254780552|r 316 --GRLLMPIAWQHLGIDIPH 333 (334)
Q Consensus 316 --gRrL~~~a~EdiGla~P~ 333 (334)
T Consensus 293 fIaRRLii~AsEDIGlAdP~ 312 (726)
T PRK13341 293 FIFRRMLIAASEDVGLADPQ 312 (726)
T ss_pred HHHHHHHHHHHHHCCCCCHH
T ss_conf 99999999998402366847