HHsearch alignment for GI: 254780552 and conserved domain: PRK13342

>PRK13342 recombination factor protein RarA; Reviewed.
Probab=100.00  E-value=0  Score=551.77  Aligned_cols=271  Identities=33%  Similarity=0.403  Sum_probs=238.1

Q ss_pred             HHHHHCCCCCHHHHCCHHHHHHH---HHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf             57875078987782397999999---999999866146776707997378855778999999861898531257644334
Q gi|254780552|r   17 ADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA   93 (334)
Q Consensus        17 ~~~~~lRP~~l~dviGQ~~~~~~---l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~   93 (334)
T Consensus         2 PLAer~RP~~lde~vGQ~hllg~~~~L~~~i~~-----~~~~s~Il~GPPG~GKTTlA~iiA~~~~~~f~~lnA-~~~gv   75 (417)
T PRK13342          2 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEA-----GRLSSMILWGPPGTGKTTLARIIAGATDAEFEALSA-VTSGV   75 (417)
T ss_pred             CCHHHHCCCCHHHHCCCHHHHCCCHHHHHHHHC-----CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEC-CCCCH
T ss_conf             871644999888857987760897199999976-----999759988969998999999999986898899614-10388


Q ss_pred             HHHHHHHHHHH-----CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCC--CC
Q ss_conf             67666666410-----163788875761698999999998634751002567876520004667400552045543--35
Q gi|254780552|r   94 GDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG--LL  166 (334)
Q Consensus        94 ~dl~~~~~~~~-----~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~--~l  166 (334)
T Consensus        76 ~dir~ii~~a~~~~~~~~tilfiDEIHRfnK~QQD~LLp~vE~g~i--------------------iLIgATTENP~f~i  135 (417)
T PRK13342         76 KDLREVIEEAKQSRLGRRTILFIDEIHRFNKAQQDALLPHVEDGTI--------------------TLIGATTENPSFEV  135 (417)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEEECHHHCCHHHHHHHHHHHHCCCE--------------------EEEEECCCCCHHHC
T ss_conf             9999999998863148965999978200588999999875112656--------------------99974157922534


Q ss_pred             CHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             545442012067326454799999877765412-----101111111233202210156788777543334554158864
Q gi|254780552|r  167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT-----GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI  241 (334)
Q Consensus       167 ~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~-----~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~~~~~~i  241 (334)
T Consensus       136 n~aLlSRc~-vf~l~~L~~~di~~iL~ral~~e~~~~~~i~i~~~al~~i~~~s~GDaR~aLN~LE~a~--~~~~~~~~i  212 (417)
T PRK13342        136 NPALLSRAQ-VFELKPLSEEDLEQLLKRALEDERGLGRKLELDDEALDALARLADGDARRALNLLELAA--AAAAGGEVI  212 (417)
T ss_pred             CHHHHHHHH-HEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH--HCCCCCCCC
T ss_conf             898985657-00205899999999999999877433788776999999999814985999999999998--525899734


Q ss_pred             CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHH--HHHH
Q ss_conf             27787876542100000046776889999997518662069999998287456746789999998343058718--9999
Q gi|254780552|r  242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLL  319 (334)
Q Consensus       242 ~~~~~~~~l~~~~id~~Gl~~~d~~~L~~l~~~~~~g~~~~~~isA~~ks~RgS~~daa~~yL~r~g~~~~~pr--gRrL  319 (334)
T Consensus       213 ~~~~~~~~~~~~~-----------------~~yDk~gd~HYd~iSAf~KSiRGSDpdAAlyyLarml~~GEDp~~IaRRL  275 (417)
T PRK13342        213 TLELLEEALQRRA-----------------ARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRL  275 (417)
T ss_pred             CHHHHHHHHHHCC-----------------CCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             8999999984410-----------------35777863478999999998516995489999999997599979999999


Q ss_pred             HHHHHHHCCCCCCC
Q ss_conf             99888664888889
Q gi|254780552|r  320 MPIAWQHLGIDIPH  333 (334)
Q Consensus       320 ~~~a~EdiGla~P~  333 (334)
T Consensus       276 ii~AsEDIGlAdP~  289 (417)
T PRK13342        276 VIIASEDIGLADPN  289 (417)
T ss_pred             HHHHHHHHCCCCHH
T ss_conf             99885440367878