HHsearch alignment for GI: 254780552 and conserved domain: PRK13833
>PRK13833 conjugal transfer protein TrbB; Provisional.
Probab=97.16 E-value=0.00048 Score=44.26 Aligned_cols=53 Identities=26% Similarity=0.328 Sum_probs=35.1
Q ss_pred CCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 78987782397999999999999866146776707997378855778999999861
Q gi|254780552|r 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 (334)
Q Consensus 23 RP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l 78 (334)
T Consensus 116 ~~~tl~dlv~~g~~t~~~~~~L~~aV~~r---~nilVsGgTGSGKTTllnaL~~~i 168 (323)
T PRK13833 116 RLIPLDDYVRSKVMTEAQASTIRSAISSR---LNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCCCHHHHHHCCCCCHHHHHHHHHHHHCC---CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99999999876999999999999999818---968999177775689999999864