HHsearch alignment for GI: 254780552 and conserved domain: PRK13889
>PRK13889 conjugal transfer relaxase TraA; Provisional.
Probab=95.37 E-value=0.016 Score=34.92 Aligned_cols=76 Identities=29% Similarity=0.332 Sum_probs=45.8
Q ss_pred EEEECCCCCCHHHHHHHH---HHHCCCCCCCC--CC---CCCCC-----HHHHHHHH-------HHHHCCCHHHHHHHHH
Q ss_conf 799737885577899999---98618985312--57---64433-----46766666-------6410163788875761
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVV---ARELGVNFRST--SG---PVIAK-----AGDLAALL-------TNLEDRDVLFIDEIHR 116 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~ii---A~~l~~~~~~~--s~---~~~~~-----~~dl~~~~-------~~~~~~~vlfiDEihr 116 (334)
T Consensus 365 avVvG~AGtGKStmL~aAReawEa~GyrV~GaALsGkAAegLe~~sGI~SrTlAs~e~~w~~g~~~L~~~dVlVVDEAGM 444 (992)
T PRK13889 365 GVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIASRTIASLEHGWGQGRDLLTARDVLVIDEAGM 444 (992)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
T ss_conf 89983388878899999999999779889811500689997653479431679999998746733478985899967655
Q ss_pred CCHHHHHHHHHHHHCC
Q ss_conf 6989999999986347
Q gi|254780552|r 117 LSIIVEEILYPAMEDF 132 (334)
Q Consensus 117 l~~~~q~~Ll~~mE~~ 132 (334)
T Consensus 445 VgSRqMarll~~Ae~A 460 (992)
T PRK13889 445 VGTRQLERVLSHAADA 460 (992)
T ss_pred CCHHHHHHHHHHHHHC
T ss_conf 7749999999999984