HHsearch alignment for GI: 254780552 and conserved domain: PRK13889

>PRK13889 conjugal transfer relaxase TraA; Provisional.
Probab=95.37  E-value=0.016  Score=34.92  Aligned_cols=76  Identities=29%  Similarity=0.332  Sum_probs=45.8

Q ss_pred             EEEECCCCCCHHHHHHHH---HHHCCCCCCCC--CC---CCCCC-----HHHHHHHH-------HHHHCCCHHHHHHHHH
Q ss_conf             799737885577899999---98618985312--57---64433-----46766666-------6410163788875761
Q gi|254780552|r   57 VLFVGPPGLGKTTLAQVV---ARELGVNFRST--SG---PVIAK-----AGDLAALL-------TNLEDRDVLFIDEIHR  116 (334)
Q Consensus        57 ~Lf~GPpG~GKTtlA~ii---A~~l~~~~~~~--s~---~~~~~-----~~dl~~~~-------~~~~~~~vlfiDEihr  116 (334)
T Consensus       365 avVvG~AGtGKStmL~aAReawEa~GyrV~GaALsGkAAegLe~~sGI~SrTlAs~e~~w~~g~~~L~~~dVlVVDEAGM  444 (992)
T PRK13889        365 GVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIASRTIASLEHGWGQGRDLLTARDVLVIDEAGM  444 (992)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
T ss_conf             89983388878899999999999779889811500689997653479431679999998746733478985899967655


Q ss_pred             CCHHHHHHHHHHHHCC
Q ss_conf             6989999999986347
Q gi|254780552|r  117 LSIIVEEILYPAMEDF  132 (334)
Q Consensus       117 l~~~~q~~Ll~~mE~~  132 (334)
T Consensus       445 VgSRqMarll~~Ae~A  460 (992)
T PRK13889        445 VGTRQLERVLSHAADA  460 (992)
T ss_pred             CCHHHHHHHHHHHHHC
T ss_conf             7749999999999984