HHsearch alignment for GI: 254780552 and conserved domain: TIGR00382

>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=99.79  E-value=9.2e-20  Score=140.36  Aligned_cols=189  Identities=28%  Similarity=0.425  Sum_probs=131.9

Q ss_pred             CHHHH-CCHHHHHHHHHHHHHHHHHC-----------C-C-------------CCCCEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             87782-39799999999999986614-----------6-7-------------767079973788557789999998618
Q gi|254780552|r   26 TLEEF-TGQVEACSNLKVFIEAAKAR-----------A-E-------------ALDHVLFVGPPGLGKTTLAQVVARELG   79 (334)
Q Consensus        26 ~l~dv-iGQ~~~~~~l~~~i~a~~~~-----------~-~-------------~~~h~Lf~GPpG~GKTtlA~iiA~~l~   79 (334)
T Consensus        98 ~LD~YVIGQe~AKKVLsVAVYNHYKRl~~~~~n~~~d~~D~nvelehleeVEL~KSNILLiGPTGSGKTLLAqTLA~~L~  177 (452)
T TIGR00382        98 HLDEYVIGQEQAKKVLSVAVYNHYKRLNLKEKNKKSDNGDSNVELEHLEEVELSKSNILLIGPTGSGKTLLAQTLARILN  177 (452)
T ss_pred             HHCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             72136123101052543241124666532430455588400023544444333006624546888526899999998738


Q ss_pred             CCCCCCCCCCCCCHH----HHHHHHHHH----------HCCCHHHHHHHHHCCHH--------------HHHHHHHHHHC
Q ss_conf             985312576443346----766666641----------01637888757616989--------------99999998634
Q gi|254780552|r   80 VNFRSTSGPVIAKAG----DLAALLTNL----------EDRDVLFIDEIHRLSII--------------VEEILYPAMED  131 (334)
Q Consensus        80 ~~~~~~s~~~~~~~~----dl~~~~~~~----------~~~~vlfiDEihrl~~~--------------~q~~Ll~~mE~  131 (334)
T Consensus       178 VPfAiADATtLTEAGYVGEDVENIL~~Llq~ad~DV~kA~kGIiYIDEIDKIaRkSEN~SITRDVSGEGVQQALLKi~EG  257 (452)
T TIGR00382       178 VPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEG  257 (452)
T ss_pred             CCEEECCHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHCCCEEEEECCCCHHHHCCCCEEEEEECCCHHHHHHHHHHHC
T ss_conf             87421111102006642422889999998741455245278508984223101215778011221755499999987603


Q ss_pred             CCCCCCC---C-CCCCCCEEECCCCCCEEEECCC----------------------------------------CCCC--
Q ss_conf             7510025---6-7876520004667400552045----------------------------------------5433--
Q gi|254780552|r  132 FQLDLMV---G-EGPSARSVKINLSRFTLIAATT----------------------------------------RVGL--  165 (334)
Q Consensus       132 ~~i~i~~---~-~~~~a~~~~~~~~~f~lI~ATt----------------------------------------~~~~--  165 (334)
T Consensus       258 -TvA~vPPqGGRKHP~~~~iqiDTs~ILFICGGAF~GL~~iI~~R~~~~~~iGF~~~~~~~~~~~~~~~~L~~v~~~DL~  336 (452)
T TIGR00382       258 -TVANVPPQGGRKHPQQEFIQIDTSNILFICGGAFVGLEKIIKKRTEKKSSIGFGAEVKKKSKEKSEEELLRQVEPEDLV  336 (452)
T ss_pred             -CEEEECCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHH
T ss_conf             -2343175448868865768864764001105434448999988745553335455210045787899999751711122


Q ss_pred             ---CCHHHHHCCCCEEECCCCCHHHHHHHHHH--------HHH---HC--CCHHHHHHHHHHHCCC
Q ss_conf             ---55454420120673264547999998777--------654---12--1011111112332022
Q gi|254780552|r  166 ---LTNPLQDRFGIPIRLNFYEIEDLKTIVQR--------GAK---LT--GLAVTDEAACEIAMRS  215 (334)
Q Consensus       166 ---l~~~l~sR~~~~~~~~~~~~~el~~il~~--------~~~---~~--~i~~~~~al~~ia~~s  215 (334)
T Consensus       337 kFGLIPEfIGRLPV~a~L~~L~~eAL~~IL~~PkNAlvKQY~~lf~ld~VeL~F~~eAl~~IA~~A  402 (452)
T TIGR00382       337 KFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKLDNVELEFEEEALKAIAKKA  402 (452)
T ss_pred             HHCCCCCCCCCCCCEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf             105551011053402027878878999985254444889999971645611345588899999999