HHsearch alignment for GI: 254780552 and conserved domain: TIGR01243
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=99.76 E-value=3.8e-18 Score=130.51 Aligned_cols=157 Identities=32% Similarity=0.493 Sum_probs=100.6
Q ss_pred CCHHHHCCHHHHHHHHHHHHHHHHHCC--------CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC----
Q ss_conf 987782397999999999999866146--------77670799737885577899999986189853125764433----
Q gi|254780552|r 25 RTLEEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK---- 92 (334)
Q Consensus 25 ~~l~dviGQ~~~~~~l~~~i~a~~~~~--------~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~---- 92 (334)
T Consensus 203 vtyediG~l~e~~~~~re~~elP~~hPe~f~~lGiePPkG~ll~GPPGtGktllaka~ane~~a~f~~inGPeimsky~G 282 (980)
T TIGR01243 203 VTYEDIGGLKEAVKKIREMVELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFIAINGPEIMSKYYG 282 (980)
T ss_pred CCHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHCC
T ss_conf 20332033589999999988435756478986188998735875589861789999987530551788506034433136
Q ss_pred --HHHHHHHHHHHHCC--CHHHHHHHHHCCHHHHH-----------HHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEE
Q ss_conf --46766666641016--37888757616989999-----------9999863475100256787652000466740055
Q gi|254780552|r 93 --AGDLAALLTNLEDR--DVLFIDEIHRLSIIVEE-----------ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLI 157 (334)
Q Consensus 93 --~~dl~~~~~~~~~~--~vlfiDEihrl~~~~q~-----------~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI 157 (334)
T Consensus 283 e~e~~lr~if~eaeenaP~iifideidaiaPkr~e~~Geve~r~v~qlltlmdGlk-------~---------rG~v~vi 346 (980)
T TIGR01243 283 ESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLK-------G---------RGKVIVI 346 (980)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHC-------C---------CCEEEEE
T ss_conf 30789999998653058707874121100764100001688999999999974002-------4---------8728998
Q ss_pred ECCCCCCCCCHHHHH--CCCCEEECCCCCHHHHHHHHHHHHH
Q ss_conf 204554335545442--0120673264547999998777654
Q gi|254780552|r 158 AATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAK 197 (334)
Q Consensus 158 ~ATt~~~~l~~~l~s--R~~~~~~~~~~~~~el~~il~~~~~ 197 (334)
T Consensus 347 GatnrP~a~dPalrrPGrfdrei~~~~Pd~~~r~eil~~htr 388 (980)
T TIGR01243 347 GATNRPDALDPALRRPGRFDREIEIGVPDKEGRKEILQIHTR 388 (980)
T ss_pred ECCCCCCCCCHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 146885002622427886443357418854567888876414