HHsearch alignment for GI: 254780552 and conserved domain: TIGR01447
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit; InterPro: IPR006344 This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. C-terminal part of the protein matches a domain found in viral RNA helicase, superfamily 1, IPR000606 from INTERPRO. ; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.
Probab=97.14 E-value=0.00041 Score=44.64 Aligned_cols=50 Identities=18% Similarity=0.255 Sum_probs=29.1
Q ss_pred CHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCC
Q ss_conf 3788875761698999999998634751002567876520004667400552045543355
Q gi|254780552|r 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167 (334)
Q Consensus 107 ~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l~ 167 (334)
T Consensus 351 DVLvvDEaSMVdl~lm~kL~~A~~~~~k--------~~KLy~---~~LIllGD~nQL~sve 400 (753)
T TIGR01447 351 DVLVVDEASMVDLPLMAKLLKALPPNTK--------DKKLYA---DRLILLGDKNQLPSVE 400 (753)
T ss_pred CEEEECCCHHCCHHHHHHHHHHCCCCCC--------CCCHHH---CCCCEECCCCCCCCCC
T ss_conf 5278706002267999999972263001--------320101---0200122678888754