HHsearch alignment for GI: 254780552 and conserved domain: TIGR01448
>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=97.78 E-value=2.8e-05 Score=51.77 Aligned_cols=92 Identities=29% Similarity=0.461 Sum_probs=54.3
Q ss_pred EEEECCCCCCHHHHHHHHHHH---CC-CCCC-----------CCCCCCCCCHH-HHH-----------HHH--------H
Q ss_conf 799737885577899999986---18-9853-----------12576443346-766-----------666--------6
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARE---LG-VNFR-----------STSGPVIAKAG-DLA-----------ALL--------T 101 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~---l~-~~~~-----------~~s~~~~~~~~-dl~-----------~~~--------~ 101 (334)
T Consensus 368 ~iLTGGPGTGKtT~t~~i~~~~~~~~gl~l~~~~~vndd~~v~LaAP-TGrAAkRl~E~TG~~a~TIHRLlG~~~~~~~~ 446 (769)
T TIGR01448 368 VILTGGPGTGKTTITKAIIELYEELKGLDLDKDDYVNDDLPVVLAAP-TGRAAKRLAEVTGLEALTIHRLLGYGSDTKSE 446 (769)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECC-CHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 99857788861689999999998716877553124567764887377-43788851100262123477863689888732
Q ss_pred H--HH---CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCCH
Q ss_conf 4--10---1637888757616989999999986347510025678765200046674005520455433554
Q gi|254780552|r 102 N--LE---DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168 (334)
Q Consensus 102 ~--~~---~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l~~ 168 (334)
T Consensus 447 ~k~~~~~~~~DL~IvDE~SM~Dt~L~~~lL~a~P~~a~l-------------------llVGD~DQLPSV~p 499 (769)
T TIGR01448 447 NKNLEDPIDADLLIVDESSMVDTWLASSLLAAVPDHARL-------------------LLVGDADQLPSVGP 499 (769)
T ss_pred CHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEE-------------------EEECCCCCCCCCCC
T ss_conf 110113478776998146218899999998617977779-------------------88837688898864