HHsearch alignment for GI: 254780552 and conserved domain: TIGR01967
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA; InterPro: IPR010222 This entry represents HrpA, one of two related but uncharacterised DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterised, is about 800 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity.
Probab=97.22 E-value=0.00023 Score=46.24 Aligned_cols=73 Identities=34% Similarity=0.538 Sum_probs=43.8
Q ss_pred EEEECCCCCCHHH-----------------------------HHHHHHHHCCCCCCCCCCCCCC---CHHH--HH-----
Q ss_conf 7997378855778-----------------------------9999998618985312576443---3467--66-----
Q gi|254780552|r 57 VLFVGPPGLGKTT-----------------------------LAQVVARELGVNFRSTSGPVIA---KAGD--LA----- 97 (334)
Q Consensus 57 ~Lf~GPpG~GKTt-----------------------------lA~iiA~~l~~~~~~~s~~~~~---~~~d--l~----- 97 (334)
T Consensus 87 viiAGETGSGKTTQLPKICLELGrG~~GlIGHTQPRRlAAR~VA~R~AeELgtplGe~VGYkVRF~D~v~~~t~VKLmTD 166 (1320)
T TIGR01967 87 VIIAGETGSGKTTQLPKICLELGRGSRGLIGHTQPRRLAARSVAERVAEELGTPLGELVGYKVRFEDQVSSNTLVKLMTD 166 (1320)
T ss_pred EEEECCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCEEEEHHH
T ss_conf 99972448762023216777542787654124714688999999999998388988613203663142688543630322
Q ss_pred HHH-HH------HHCCCHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 666-64------1016378887576169899999999863
Q gi|254780552|r 98 ALL-TN------LEDRDVLFIDEIHRLSIIVEEILYPAME 130 (334)
Q Consensus 98 ~~~-~~------~~~~~vlfiDEihrl~~~~q~~Ll~~mE 130 (334)
T Consensus 167 GiLLAE~Q~DRfL~~YDTIIIDEAHERSLNI-DFLLGYLK 205 (1320)
T TIGR01967 167 GILLAETQQDRFLERYDTIIIDEAHERSLNI-DFLLGYLK 205 (1320)
T ss_pred HHHHHHHHHHHHHHHCCCEEECCHHHHHHHH-HHHHHHHH
T ss_conf 3589985200222106733651123112338-89998887