HHsearch alignment for GI: 254780552 and conserved domain: TIGR01970
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB; InterPro: IPR010225 This entry represents HrpB, one of two related predicted DEAH-box ATP-dependent helicases of unknown function found in many proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti, designated HelO, has been studied but is not essential for growth and mutants have no obvious phenotype . HrpB is typically about 800 residues in length, while its paralog HrpA (IPR010222 from INTERPRO), also uncharacterised, is about 1300 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing ..
Probab=96.99 E-value=0.0011 Score=42.09 Aligned_cols=80 Identities=33% Similarity=0.549 Sum_probs=43.7
Q ss_pred CCEEEECCCCCCHHH-----------------------------HHHHHHHHCCCCCCCCCCCCC---CCHH-----HH-
Q ss_conf 707997378855778-----------------------------999999861898531257644---3346-----76-
Q gi|254780552|r 55 DHVLFVGPPGLGKTT-----------------------------LAQVVARELGVNFRSTSGPVI---AKAG-----DL- 96 (334)
Q Consensus 55 ~h~Lf~GPpG~GKTt-----------------------------lA~iiA~~l~~~~~~~s~~~~---~~~~-----dl- 96 (334)
T Consensus 18 ~~vvL~APpGAGKsT~~PLaLL~~pW~~~~kIimLEPRRlAAR~~A~rlA~~LgE~VG~tVGyRvR~enkVs~~TRlEvV 97 (858)
T TIGR01970 18 PQVVLEAPPGAGKSTAVPLALLDAPWLIGGKIIMLEPRRLAARSAAQRLASQLGEEVGDTVGYRVRLENKVSARTRLEVV 97 (858)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEEE
T ss_conf 65064167224711058899766264348807874744789999999999970889886204057711325877545787
Q ss_pred -HHHHHHHHC-------CCHHHHHHHHH----------CCHHHHHHHHHHHHC--CCCCCC
Q ss_conf -666664101-------63788875761----------698999999998634--751002
Q gi|254780552|r 97 -AALLTNLED-------RDVLFIDEIHR----------LSIIVEEILYPAMED--FQLDLM 137 (334)
Q Consensus 97 -~~~~~~~~~-------~~vlfiDEihr----------l~~~~q~~Ll~~mE~--~~i~i~ 137 (334)
T Consensus 98 TEGiLTRMlQ~DP~L~GVg~liFDEFHERsL~aDLaLALaLdVQs~LR---dDPPLkil~M 155 (858)
T TIGR01970 98 TEGILTRMLQDDPELEGVGLLIFDEFHERSLDADLALALALDVQSALR---DDPPLKILIM 155 (858)
T ss_pred ECCHHHHHCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCEEHHC
T ss_conf 232687740168884535232311022434678899999885334310---6864000000