HHsearch alignment for GI: 254780552 and conserved domain: TIGR02533
>TIGR02533 type_II_gspE general secretory pathway protein E; InterPro: IPR013369 GspE, the E protein of the type II secretion system, is also referred to as the main terminal branch of the general secretion pathway. ; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=96.29 E-value=0.0084 Score=36.64 Aligned_cols=94 Identities=31% Similarity=0.479 Sum_probs=52.4
Q ss_pred CHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCC---CCCCCC---CCCHHH----
Q ss_conf 8778239799999999999986614677670799737885577899999986189853---125764---433467----
Q gi|254780552|r 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR---STSGPV---IAKAGD---- 95 (334)
Q Consensus 26 ~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~---~~s~~~---~~~~~d---- 95 (334)
T Consensus 223 ~L~~LGm~~~~l~~~~~li~--rpHG--I--iLVTGPTGSGKtTTLYaaL~~LN~~~~NIlTvEDPVEY~i~GIgQ~Qvn 296 (495)
T TIGR02533 223 DLEALGMSPELLSSLERLIK--RPHG--I--ILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQIEGIGQIQVN 296 (495)
T ss_pred HHHHCCCCHHHHHHHHHHHH--CCCC--E--EEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCEEEEECCCCEEEEC
T ss_conf 58864888889999999971--8896--1--8841778985258899999863589971568657824762487636514
Q ss_pred ----------HHHHHHHHHCCCHHHHHHHHHCCH---HHHHHHHH
Q ss_conf ----------666666410163788875761698---99999999
Q gi|254780552|r 96 ----------LAALLTNLEDRDVLFIDEIHRLSI---IVEEILYP 127 (334)
Q Consensus 96 ----------l~~~~~~~~~~~vlfiDEihrl~~---~~q~~Ll~ 127 (334)
T Consensus 297 ~kIglTFA~GLRaILR--QDPDiiMvGEIRD~ETA~IAiQASLTG 339 (495)
T TIGR02533 297 PKIGLTFAAGLRAILR--QDPDIIMVGEIRDLETAQIAIQASLTG 339 (495)
T ss_pred CCCCHHHHHHHHHHHC--CCCCEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 6543038888788642--799889982316068999999876432