HHsearch alignment for GI: 254780552 and conserved domain: TIGR02881
>TIGR02881 spore_V_K stage V sporulation protein K; InterPro: IPR014232 Proteins in this entry include the stage V sporulation protein K (SpoVK), a close homologue of the Rubisco expression protein CbbX (IPR000470 from INTERPRO), and are members of an ATPase family associated with various cellular activities. These proteins are strictly limited to bacterial endospore-forming species, but are not found universally among members of this group; they are missing from the Clostridium species..
Probab=99.95 E-value=1.7e-26 Score=181.55 Aligned_cols=196 Identities=29% Similarity=0.388 Sum_probs=135.0
Q ss_pred CCHHHHCCHHHHHHHHHH---HHHHHHHC-------CCCCCCEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCCCCCC
Q ss_conf 987782397999999999---99986614-------6776707997378855778999999861---8985312576443
Q gi|254780552|r 25 RTLEEFTGQVEACSNLKV---FIEAAKAR-------AEALDHVLFVGPPGLGKTTLAQVVAREL---GVNFRSTSGPVIA 91 (334)
Q Consensus 25 ~~l~dviGQ~~~~~~l~~---~i~a~~~~-------~~~~~h~Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s~~~~~ 91 (334)
T Consensus 3 ~EL~~~vGL~~vK~~i~EiYA~i~i~~kR~~~GLk~~~~~LHMiFKGNPGTGKTTVAR~~gklf~emnv---L~KGH~iE 79 (261)
T TIGR02881 3 RELSRLVGLDEVKELIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARLLGKLFKEMNV---LSKGHLIE 79 (261)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCC---CCCCCEEE
T ss_conf 235640488899999999999999988887510114884478774278668438999999999853375---67886788
Q ss_pred -CHHHHHHH------------HHHHHCCCHHHHHHHHHCC--------HHHHHHHHHHHHCCCCCCCCCCCCCCCEEECC
Q ss_conf -34676666------------6641016378887576169--------89999999986347510025678765200046
Q gi|254780552|r 92 -KAGDLAAL------------LTNLEDRDVLFIDEIHRLS--------IIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150 (334)
Q Consensus 92 -~~~dl~~~------------~~~~~~~~vlfiDEihrl~--------~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~ 150 (334)
T Consensus 80 ~ERADLVGEYIGHTAqkTRe~~kkA-~GGvLFiDEAYSLaRGGEKDFGKEAIDtLVK~mEd~~----------------- 141 (261)
T TIGR02881 80 VERADLVGEYIGHTAQKTREVIKKA-LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKAMEDQR----------------- 141 (261)
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHH-CCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC-----------------
T ss_conf 7622212232030048999999986-3880055777776148888766208889999876156-----------------
Q ss_pred CCCCEEEECCCCCC-----CCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 67400552045543-----3554544201206732645479999987776541210111111123320221015678877
Q gi|254780552|r 151 LSRFTLIAATTRVG-----LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225 (334)
Q Consensus 151 ~~~f~lI~ATt~~~-----~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~Alnl 225 (334)
T Consensus 142 -~~lvlILAGY~~EM~yFL~~NPGL~SRFPi~i~FPdY~~eeL~~Ia~~m~~~ReY~Lt~~A~~~lr~~l~~-------- 212 (261)
T TIGR02881 142 -NELVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLAK-------- 212 (261)
T ss_pred -CCEEEEEECCHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------
T ss_conf -98689970876899998620779777665054188998889999999998646422578899999999741--------
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 754333455415886427787876542
Q gi|254780552|r 226 LRRVRDFAEVAHAKTITREIADAALLR 252 (334)
Q Consensus 226 Le~v~d~a~~~~~~~i~~~~~~~~l~~ 252 (334)
T Consensus 213 ~~~~--~~~~~sNaR~vRN~iE~AIR~ 237 (261)
T TIGR02881 213 VDQL--SSREFSNARYVRNIIEKAIRR 237 (261)
T ss_pred HHHH--HHCCCCCCCHHHHHHHHHHHH
T ss_conf 2444--210057620124288999999