HHsearch alignment for GI: 254780552 and conserved domain: TIGR02915
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator; InterPro: IPR014264 Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see Q06065 from SWISSPROT). These proteins have a Fis family DNA binding sequence, a response regulator receiver domain, and sigma-54 interaction domain. They are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria, where members of IPR014265 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=98.93 E-value=1.7e-09 Score=77.60 Aligned_cols=196 Identities=22% Similarity=0.279 Sum_probs=128.8
Q ss_pred CCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCCCCCCCH---HHH--
Q ss_conf 987782397999999999999866146776707997378855778999999861---898531257644334---676--
Q gi|254780552|r 25 RTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---GVNFRSTSGPVIAKA---GDL-- 96 (334)
Q Consensus 25 ~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s~~~~~~~---~dl-- 96 (334)
T Consensus 139 t~~~Gli~~~~~m~kic~tIekvA~sd---~TvllLGESGTGKEV~ArA~H~~S~R~~~~FVAINCAAIPEnLLEsELFG 215 (451)
T TIGR02915 139 TALEGLITSSPGMQKICRTIEKVAPSD---ITVLLLGESGTGKEVLARALHELSDRKDKRFVAINCAAIPENLLESELFG 215 (451)
T ss_pred CCCCCEEECCCCHHHHHHHHHHHCCCC---CEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHC
T ss_conf 103652206850678988865212000---01301046671178999898420578977734441674575246677603
Q ss_pred --HHHHHHHH----------CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCC-CCEEEECCCCC
Q ss_conf --66666410----------163788875761698999999998634751002567876520004667-40055204554
Q gi|254780552|r 97 --AALLTNLE----------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS-RFTLIAATTRV 163 (334)
Q Consensus 97 --~~~~~~~~----------~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~-~f~lI~ATt~~ 163 (334)
T Consensus 216 yEKGAFTGA~k~T~GKIE~A~~GTLFLDEIGDLP~~LQAKLLRFLQErVIER~GGR--------~eIPVDVRvvCATnqd 287 (451)
T TIGR02915 216 YEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGR--------EEIPVDVRVVCATNQD 287 (451)
T ss_pred CCCHHHHHHHCCCCCCEEEECCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHCCCCC--------CCCCCCEEEEECCCHH
T ss_conf 41012422003477616750688301111220676689999987546663105887--------2456142675032246
Q ss_pred ---------------C---C--C-CHHHHHCCCCEEECCCCCHHHH---H-HHHHHHH---HHCCCHHHHHHHHHHHCCC
Q ss_conf ---------------3---3--5-5454420120673264547999---9-9877765---4121011111112332022
Q gi|254780552|r 164 ---------------G---L--L-TNPLQDRFGIPIRLNFYEIEDL---K-TIVQRGA---KLTGLAVTDEAACEIAMRS 215 (334)
Q Consensus 164 ---------------~---~--l-~~~l~sR~~~~~~~~~~~~~el---~-~il~~~~---~~~~i~~~~~al~~ia~~s 215 (334)
T Consensus 288 L~~~i~eg~FREDLfYRl~Eisi~iPPLR~R~-----------gDa~lLA~~Fl~rf~~~~k~~~~~F~~DA~~ale~h~ 356 (451)
T TIGR02915 288 LKKMIAEGTFREDLFYRLAEISITIPPLRDRD-----------GDAVLLANAFLERFARELKRKAKGFTDDALRALEAHK 356 (451)
T ss_pred HHHHHHCCCCCCCCEEEEEEEEEECCCCCCCH-----------HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
T ss_conf 89998548972000134666786258899860-----------1899999999998878733021660699999976069
Q ss_pred -CCCHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf -101567887775433345541588642778
Q gi|254780552|r 216 -RGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 (334)
Q Consensus 216 -~Gd~R~AlnlLe~v~d~a~~~~~~~i~~~~ 245 (334)
T Consensus 357 WPGNvRELEN~vKRAVIM---a~g~qIt~~D 384 (451)
T TIGR02915 357 WPGNVRELENKVKRAVIM---AEGNQITAED 384 (451)
T ss_pred CCCCHHHHHCHHHEEEEE---CCCCCCCHHH
T ss_conf 988415440300213453---3787135654