HHsearch alignment for GI: 254780552 and conserved domain: TIGR03167
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=96.72 E-value=0.0059 Score=37.57 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=19.7
Q ss_pred CCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 70799737885577899999986
Q gi|254780552|r 55 DHVLFVGPPGLGKTTLAQVVARE 77 (334)
Q Consensus 55 ~h~Lf~GPpG~GKTtlA~iiA~~ 77 (334)
T Consensus 128 ~~~vl~G~TG~GKT~iL~~L~~~ 150 (311)
T TIGR03167 128 PLIVLGGMTGSGKTELLHALANA 150 (311)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC
T ss_conf 76998788887789999999976