HHsearch alignment for GI: 254780552 and conserved domain: TIGR03345
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.75 E-value=2.9e-17 Score=125.10 Aligned_cols=185 Identities=24% Similarity=0.306 Sum_probs=119.8
Q ss_pred HCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC----------CCCCCCCCCCC-
Q ss_conf 5078987782397999999999999866146776707997378855778999999861----------89853125764-
Q gi|254780552|r 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL----------GVNFRSTSGPV- 89 (334)
Q Consensus 21 ~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l----------~~~~~~~s~~~- 89 (334)
T Consensus 180 ~A~~gklDPvIGRd~EI~r~iqIL-~Rr~KN----NPiLVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLDlg~L 254 (852)
T TIGR03345 180 QAREGKIDPVLGRDDEIRQMIDIL-LRRRQN----NPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL 254 (852)
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHH-HHHCCC----CCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHCCEEEEEEHHHH
T ss_conf 998399998869499999999999-862479----974657999879999999999997699986774385678678888
Q ss_pred CCC---HHH----HHHHHHHH---HCCCHHHHHHHHHCC--------HHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCC
Q ss_conf 433---467----66666641---016378887576169--------899999999863475100256787652000466
Q gi|254780552|r 90 IAK---AGD----LAALLTNL---EDRDVLFIDEIHRLS--------IIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151 (334)
Q Consensus 90 ~~~---~~d----l~~~~~~~---~~~~vlfiDEihrl~--------~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~ 151 (334)
T Consensus 255 vAGtkyRGeFEeRlk~ii~ei~~~~~~iILFIDEiHtlvGAG~~~G~~DaaNiLKPaLarGel----------------- 317 (852)
T TIGR03345 255 QAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGEL----------------- 317 (852)
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHHCCCC-----------------
T ss_conf 640357635999999999999848997699963487752899888862278875178737873-----------------
Q ss_pred CCCEEEECCCCCC--C-C--CHHHHHCCCCEEECCCCCHHHHHHHHHHHH----HHCCCHHHHHHHHHHHCCC------C
Q ss_conf 7400552045543--3-5--545442012067326454799999877765----4121011111112332022------1
Q gi|254780552|r 152 SRFTLIAATTRVG--L-L--TNPLQDRFGIPIRLNFYEIEDLKTIVQRGA----KLTGLAVTDEAACEIAMRS------R 216 (334)
Q Consensus 152 ~~f~lI~ATt~~~--~-l--~~~l~sR~~~~~~~~~~~~~el~~il~~~~----~~~~i~~~~~al~~ia~~s------~ 216 (334)
T Consensus 318 ---r~IGATT~~EYrk~iEkD~AL~RRFq~V-~V~EPs~eeti~IL~glk~~yE~hH~V~i~d~Ai~aAv~LS~RYI~dR 393 (852)
T TIGR03345 318 ---RTIAATTWAEYKKYFEKDPALTRRFQVV-KVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGR 393 (852)
T ss_pred ---EEEEECCHHHHHHHHHCCHHHHHHCCCC-CCCCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCCC
T ss_conf ---4998357899988864268899624755-279998799999999879998554796870899999999987215545
Q ss_pred CCHHHHHHHHHHHHH
Q ss_conf 015678877754333
Q gi|254780552|r 217 GTPRIAGRLLRRVRD 231 (334)
Q Consensus 217 Gd~R~AlnlLe~v~d 231 (334)
T Consensus 394 ~LPDKAIDLlDeA~A 408 (852)
T TIGR03345 394 QLPDKAVSLLDTACA 408 (852)
T ss_pred CCCHHHHHHHHHHHH
T ss_conf 584278999999999