HHsearch alignment for GI: 254780552 and conserved domain: TIGR03345

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.75  E-value=2.9e-17  Score=125.10  Aligned_cols=185  Identities=24%  Similarity=0.306  Sum_probs=119.8

Q ss_pred             HCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC----------CCCCCCCCCCC-
Q ss_conf             5078987782397999999999999866146776707997378855778999999861----------89853125764-
Q gi|254780552|r   21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL----------GVNFRSTSGPV-   89 (334)
Q Consensus        21 ~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l----------~~~~~~~s~~~-   89 (334)
T Consensus       180 ~A~~gklDPvIGRd~EI~r~iqIL-~Rr~KN----NPiLVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLDlg~L  254 (852)
T TIGR03345       180 QAREGKIDPVLGRDDEIRQMIDIL-LRRRQN----NPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL  254 (852)
T ss_pred             HHHCCCCCCCCCCHHHHHHHHHHH-HHHCCC----CCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHCCEEEEEEHHHH
T ss_conf             998399998869499999999999-862479----974657999879999999999997699986774385678678888


Q ss_pred             CCC---HHH----HHHHHHHH---HCCCHHHHHHHHHCC--------HHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCC
Q ss_conf             433---467----66666641---016378887576169--------899999999863475100256787652000466
Q gi|254780552|r   90 IAK---AGD----LAALLTNL---EDRDVLFIDEIHRLS--------IIVEEILYPAMEDFQLDLMVGEGPSARSVKINL  151 (334)
Q Consensus        90 ~~~---~~d----l~~~~~~~---~~~~vlfiDEihrl~--------~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~  151 (334)
T Consensus       255 vAGtkyRGeFEeRlk~ii~ei~~~~~~iILFIDEiHtlvGAG~~~G~~DaaNiLKPaLarGel-----------------  317 (852)
T TIGR03345       255 QAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGEL-----------------  317 (852)
T ss_pred             HHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHHCCCC-----------------
T ss_conf             640357635999999999999848997699963487752899888862278875178737873-----------------


Q ss_pred             CCCEEEECCCCCC--C-C--CHHHHHCCCCEEECCCCCHHHHHHHHHHHH----HHCCCHHHHHHHHHHHCCC------C
Q ss_conf             7400552045543--3-5--545442012067326454799999877765----4121011111112332022------1
Q gi|254780552|r  152 SRFTLIAATTRVG--L-L--TNPLQDRFGIPIRLNFYEIEDLKTIVQRGA----KLTGLAVTDEAACEIAMRS------R  216 (334)
Q Consensus       152 ~~f~lI~ATt~~~--~-l--~~~l~sR~~~~~~~~~~~~~el~~il~~~~----~~~~i~~~~~al~~ia~~s------~  216 (334)
T Consensus       318 ---r~IGATT~~EYrk~iEkD~AL~RRFq~V-~V~EPs~eeti~IL~glk~~yE~hH~V~i~d~Ai~aAv~LS~RYI~dR  393 (852)
T TIGR03345       318 ---RTIAATTWAEYKKYFEKDPALTRRFQVV-KVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGR  393 (852)
T ss_pred             ---EEEEECCHHHHHHHHHCCHHHHHHCCCC-CCCCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCCC
T ss_conf             ---4998357899988864268899624755-279998799999999879998554796870899999999987215545


Q ss_pred             CCHHHHHHHHHHHHH
Q ss_conf             015678877754333
Q gi|254780552|r  217 GTPRIAGRLLRRVRD  231 (334)
Q Consensus       217 Gd~R~AlnlLe~v~d  231 (334)
T Consensus       394 ~LPDKAIDLlDeA~A  408 (852)
T TIGR03345       394 QLPDKAVSLLDTACA  408 (852)
T ss_pred             CCCHHHHHHHHHHHH
T ss_conf             584278999999999