HHsearch alignment for GI: 254780552 and conserved domain: TIGR03346
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.67 E-value=5.1e-16 Score=117.49 Aligned_cols=191 Identities=23% Similarity=0.259 Sum_probs=125.6
Q ss_pred HHHCCHHHHHHHHHHHHHHHHH----CCCCCCCEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCCCCCCCHHH---HH
Q ss_conf 7823979999999999998661----46776707997378855778999999861---89853125764433467---66
Q gi|254780552|r 28 EEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGKTTLAQVVAREL---GVNFRSTSGPVIAKAGD---LA 97 (334)
Q Consensus 28 ~dviGQ~~~~~~l~~~i~a~~~----~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s~~~~~~~~d---l~ 97 (334)
T Consensus 565 ~rViGQd~AI~~I~~aI~~sraGL~dp~rP~GsFlf~GptGvGKTELAKaLAe~Lfg~~~~LIriDMSEy~E~hsvsrLi 644 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLI 644 (852)
T ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHCCHHHHHHHC
T ss_conf 89717099999999999999718888999745899867887768999999999985585206984304430122477855
Q ss_pred ------------HHHHH---HHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCC
Q ss_conf ------------66664---101637888757616989999999986347510025678765200046674005520455
Q gi|254780552|r 98 ------------ALLTN---LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162 (334)
Q Consensus 98 ------------~~~~~---~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~ 162 (334)
T Consensus 645 GaPPGYVGy~egG~Lte~vr~~PysVvL~DEIEKAh~~V~~~lLQilD~G~ltD~--~-----Gr~vdF~N-tiiimTSN 716 (852)
T TIGR03346 645 GAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDG--Q-----GRTVDFRN-TVIIMTSN 716 (852)
T ss_pred CCCCCCCCCCCCCEECHHHHHCCCEEEEECCHHHHCHHHHHHHHHHHCCCEEECC--C-----CCEEEEEE-EEEEEECC
T ss_conf 8999767768787423989819887998530543076899999988236743079--9-----98885355-68986154
Q ss_pred CC--------------------------CCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHH---------HCCCHHHHHH
Q ss_conf 43--------------------------355454420120673264547999998777654---------1210111111
Q gi|254780552|r 163 VG--------------------------LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK---------LTGLAVTDEA 207 (334)
Q Consensus 163 ~~--------------------------~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~---------~~~i~~~~~a 207 (334)
T Consensus 717 ~Ga~~i~~~~~~~~~~~~~~~~~~~~~~~F~PEflnRid~ii~F~~L~~~~l~~I~~~~l~~l~~~l~~~~i~l~~~~~~ 796 (852)
T TIGR03346 717 LGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAA 796 (852)
T ss_pred CCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_conf 06599974114555799999999999965899899637868983789999999999999999999999779849988899
Q ss_pred HHHHHCCCC---CCHHHHHHHH
Q ss_conf 123320221---0156788777
Q gi|254780552|r 208 ACEIAMRSR---GTPRIAGRLL 226 (334)
Q Consensus 208 l~~ia~~s~---Gd~R~AlnlL 226 (334)
T Consensus 797 ~~~l~~~g~~~~~GAR~l~r~i 818 (852)
T TIGR03346 797 LDFLAEAGYDPVYGARPLKRAI 818 (852)
T ss_pred HHHHHHHCCCCCCCHHHHHHHH
T ss_conf 9999984889774715699999