HHsearch alignment for GI: 254780552 and conserved domain: TIGR03346

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.67  E-value=5.1e-16  Score=117.49  Aligned_cols=191  Identities=23%  Similarity=0.259  Sum_probs=125.6

Q ss_pred             HHHCCHHHHHHHHHHHHHHHHH----CCCCCCCEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCCCCCCCHHH---HH
Q ss_conf             7823979999999999998661----46776707997378855778999999861---89853125764433467---66
Q gi|254780552|r   28 EEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGKTTLAQVVAREL---GVNFRSTSGPVIAKAGD---LA   97 (334)
Q Consensus        28 ~dviGQ~~~~~~l~~~i~a~~~----~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s~~~~~~~~d---l~   97 (334)
T Consensus       565 ~rViGQd~AI~~I~~aI~~sraGL~dp~rP~GsFlf~GptGvGKTELAKaLAe~Lfg~~~~LIriDMSEy~E~hsvsrLi  644 (852)
T TIGR03346       565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLI  644 (852)
T ss_pred             HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHCCHHHHHHHC
T ss_conf             89717099999999999999718888999745899867887768999999999985585206984304430122477855


Q ss_pred             ------------HHHHH---HHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCC
Q ss_conf             ------------66664---101637888757616989999999986347510025678765200046674005520455
Q gi|254780552|r   98 ------------ALLTN---LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR  162 (334)
Q Consensus        98 ------------~~~~~---~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~  162 (334)
T Consensus       645 GaPPGYVGy~egG~Lte~vr~~PysVvL~DEIEKAh~~V~~~lLQilD~G~ltD~--~-----Gr~vdF~N-tiiimTSN  716 (852)
T TIGR03346       645 GAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDG--Q-----GRTVDFRN-TVIIMTSN  716 (852)
T ss_pred             CCCCCCCCCCCCCEECHHHHHCCCEEEEECCHHHHCHHHHHHHHHHHCCCEEECC--C-----CCEEEEEE-EEEEEECC
T ss_conf             8999767768787423989819887998530543076899999988236743079--9-----98885355-68986154


Q ss_pred             CC--------------------------CCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHH---------HCCCHHHHHH
Q ss_conf             43--------------------------355454420120673264547999998777654---------1210111111
Q gi|254780552|r  163 VG--------------------------LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK---------LTGLAVTDEA  207 (334)
Q Consensus       163 ~~--------------------------~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~---------~~~i~~~~~a  207 (334)
T Consensus       717 ~Ga~~i~~~~~~~~~~~~~~~~~~~~~~~F~PEflnRid~ii~F~~L~~~~l~~I~~~~l~~l~~~l~~~~i~l~~~~~~  796 (852)
T TIGR03346       717 LGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAA  796 (852)
T ss_pred             CCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_conf             06599974114555799999999999965899899637868983789999999999999999999999779849988899


Q ss_pred             HHHHHCCCC---CCHHHHHHHH
Q ss_conf             123320221---0156788777
Q gi|254780552|r  208 ACEIAMRSR---GTPRIAGRLL  226 (334)
Q Consensus       208 l~~ia~~s~---Gd~R~AlnlL  226 (334)
T Consensus       797 ~~~l~~~g~~~~~GAR~l~r~i  818 (852)
T TIGR03346       797 LDFLAEAGYDPVYGARPLKRAI  818 (852)
T ss_pred             HHHHHHHCCCCCCCHHHHHHHH
T ss_conf             9999984889774715699999