HHsearch alignment for GI: 254780552 and conserved domain: cd00009

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.77  E-value=2.8e-18  Score=131.32  Aligned_cols=133  Identities=35%  Similarity=0.414  Sum_probs=91.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCCCCCCCHHHHH----------
Q ss_conf             397999999999999866146776707997378855778999999861---8985312576443346766----------
Q gi|254780552|r   31 TGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---GVNFRSTSGPVIAKAGDLA----------   97 (334)
Q Consensus        31 iGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s~~~~~~~~dl~----------   97 (334)
T Consensus         1 ~~~~~~~~~l~~~~~-----~~~~~~ill~GppGtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (151)
T cd00009           1 VGQEEAIEALREALE-----LPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRL   75 (151)
T ss_pred             CCCHHHHHHHHHHHH-----CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEHHHCCHHHHHHHHHHHHHHHH
T ss_conf             985799999999981-----879980899899998865999999997121379827854777046777757605778898


Q ss_pred             -HHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCC--CCCHHHHHCC
Q ss_conf             -6666410163788875761698999999998634751002567876520004667400552045543--3554544201
Q gi|254780552|r   98 -ALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG--LLTNPLQDRF  174 (334)
Q Consensus        98 -~~~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~--~l~~~l~sR~  174 (334)
T Consensus        76 ~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~l~~~~~~~------------~~~~~~~vI~~tn~~~~~~~~~~~~~R~  143 (151)
T cd00009          76 LFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR------------IDRENVRVIGATNRPLLGDLDRALYDRL  143 (151)
T ss_pred             HHHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHHHCCCC------------CCCCCEEEEEEECCCCCCCHHHHHHCCC
T ss_conf             9999997699869820166559999999999998715754------------0678889999528998868377642559


Q ss_pred             CCEEEC
Q ss_conf             206732
Q gi|254780552|r  175 GIPIRL  180 (334)
Q Consensus       175 ~~~~~~  180 (334)
T Consensus       144 ~~~i~~  149 (151)
T cd00009         144 DIRIVI  149 (151)
T ss_pred             CEEEEC
T ss_conf             869863