HHsearch alignment for GI: 254780552 and conserved domain: cd00009
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.77 E-value=2.8e-18 Score=131.32 Aligned_cols=133 Identities=35% Similarity=0.414 Sum_probs=91.5
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCCCCCCCHHHHH----------
Q ss_conf 397999999999999866146776707997378855778999999861---8985312576443346766----------
Q gi|254780552|r 31 TGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---GVNFRSTSGPVIAKAGDLA---------- 97 (334)
Q Consensus 31 iGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s~~~~~~~~dl~---------- 97 (334)
T Consensus 1 ~~~~~~~~~l~~~~~-----~~~~~~ill~GppGtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (151)
T cd00009 1 VGQEEAIEALREALE-----LPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRL 75 (151)
T ss_pred CCCHHHHHHHHHHHH-----CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEHHHCCHHHHHHHHHHHHHHHH
T ss_conf 985799999999981-----879980899899998865999999997121379827854777046777757605778898
Q ss_pred -HHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCC--CCCHHHHHCC
Q ss_conf -6666410163788875761698999999998634751002567876520004667400552045543--3554544201
Q gi|254780552|r 98 -ALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG--LLTNPLQDRF 174 (334)
Q Consensus 98 -~~~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~--~l~~~l~sR~ 174 (334)
T Consensus 76 ~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~l~~~~~~~------------~~~~~~~vI~~tn~~~~~~~~~~~~~R~ 143 (151)
T cd00009 76 LFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR------------IDRENVRVIGATNRPLLGDLDRALYDRL 143 (151)
T ss_pred HHHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHHHCCCC------------CCCCCEEEEEEECCCCCCCHHHHHHCCC
T ss_conf 9999997699869820166559999999999998715754------------0678889999528998868377642559
Q ss_pred CCEEEC
Q ss_conf 206732
Q gi|254780552|r 175 GIPIRL 180 (334)
Q Consensus 175 ~~~~~~ 180 (334)
T Consensus 144 ~~~i~~ 149 (151)
T cd00009 144 DIRIVI 149 (151)
T ss_pred CEEEEC
T ss_conf 869863