HHsearch alignment for GI: 254780552 and conserved domain: cd00464
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.76 E-value=2.2e-05 Score=52.40 Aligned_cols=31 Identities=32% Similarity=0.666 Sum_probs=28.0
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 0799737885577899999986189853125
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTS 86 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s 86 (334)
T Consensus 1 nI~LiG~~G~GKstigk~la~~l~~~fiD~D 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEEECC
T ss_conf 9899889999889999999999798979685