HHsearch alignment for GI: 254780552 and conserved domain: cd01124

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.

Probab=97.11  E-value=0.00073  Score=43.13  Aligned_cols=43  Identities=26%  Similarity=0.235  Sum_probs=26.5

Q ss_pred             CEEEECCCCCCHHHHHHHHHHH---CCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             0799737885577899999986---18985312576443346766666
Q gi|254780552|r   56 HVLFVGPPGLGKTTLAQVVARE---LGVNFRSTSGPVIAKAGDLAALL  100 (334)
Q Consensus        56 h~Lf~GPpG~GKTtlA~iiA~~---l~~~~~~~s~~~~~~~~dl~~~~  100 (334)
T Consensus         1 stLi~G~pGsGKT~~a~qfl~~~a~~ge~~lyis--~eE~~~~l~~~~   46 (187)
T cd01124           1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT--LEESPEELIENA   46 (187)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEE--ECCCHHHHHHHH
T ss_conf             9158768999999999999999987699789999--507999999999