HHsearch alignment for GI: 254780552 and conserved domain: cd01393
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.03 E-value=0.012 Score=35.74 Aligned_cols=27 Identities=30% Similarity=0.313 Sum_probs=20.7
Q ss_pred CCCCCCE-EEECCCCCCHHHHHHHHHHH
Q ss_conf 6776707-99737885577899999986
Q gi|254780552|r 51 AEALDHV-LFVGPPGLGKTTLAQVVARE 77 (334)
Q Consensus 51 ~~~~~h~-Lf~GPpG~GKTtlA~iiA~~ 77 (334)
T Consensus 15 Gip~G~ItEi~G~~gsGKT~l~lqla~~ 42 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVE 42 (226)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9888839999999999899999999999