HHsearch alignment for GI: 254780552 and conserved domain: cd01393

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.03  E-value=0.012  Score=35.74  Aligned_cols=27  Identities=30%  Similarity=0.313  Sum_probs=20.7

Q ss_pred             CCCCCCE-EEECCCCCCHHHHHHHHHHH
Q ss_conf             6776707-99737885577899999986
Q gi|254780552|r   51 AEALDHV-LFVGPPGLGKTTLAQVVARE   77 (334)
Q Consensus        51 ~~~~~h~-Lf~GPpG~GKTtlA~iiA~~   77 (334)
T Consensus        15 Gip~G~ItEi~G~~gsGKT~l~lqla~~   42 (226)
T cd01393          15 GIPTGRITEIFGEFGSGKTQLCLQLAVE   42 (226)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf             9888839999999999899999999999