HHsearch alignment for GI: 254780552 and conserved domain: cd03221
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.66 E-value=0.0019 Score=40.55 Aligned_cols=23 Identities=43% Similarity=0.660 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 79973788557789999998618
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELG 79 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~ 79 (334)
T Consensus 29 ~~l~G~NGsGKTTl~~~l~G~~~ 51 (144)
T cd03221 29 IGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99998999849999999848988