>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

Probab=96.52  E-value=0.0015  Score=41.27  Aligned_cols=22  Identities=45%  Similarity=0.741  Sum_probs=19.2

Q ss_pred             EEEECCCCCCHHHHHHHHHHHC
Q ss_conf             7997378855778999999861
Q gi|254780552|r   57 VLFVGPPGLGKTTLAQVVAREL   78 (334)
Q Consensus        57 ~Lf~GPpG~GKTtlA~iiA~~l   78 (334)
T Consensus        28 v~ilGpNGaGKSTllk~i~G~l   49 (177)
T cd03222          28 IGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             EEEECCCCCCHHHHHHHHHCCC
T ss_conf             9998999999999999996886