HHsearch alignment for GI: 254780552 and conserved domain: cd03299
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.04 E-value=0.0046 Score=38.22 Aligned_cols=22 Identities=32% Similarity=0.647 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7997378855778999999861
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVAREL 78 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l 78 (334)
T Consensus 28 ~~iiGpSGsGKSTLlr~i~Gl~ 49 (235)
T cd03299 28 FVILGPTGSGKSVLLETIAGFI 49 (235)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999635999999997499