HHsearch alignment for GI: 254780552 and conserved domain: pfam00158
>pfam00158 Sigma54_activat Sigma-54 interaction domain.
Probab=99.20 E-value=5.6e-11 Score=86.63 Aligned_cols=122 Identities=23% Similarity=0.339 Sum_probs=78.6
Q ss_pred HCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCCCCCCCHHHH----------
Q ss_conf 2397999999999999866146776707997378855778999999861---898531257644334676----------
Q gi|254780552|r 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---GVNFRSTSGPVIAKAGDL---------- 96 (334)
Q Consensus 30 viGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s~~~~~~~~dl---------- 96 (334)
T Consensus 1 lIG~S~~m~~l~~~i~~~a~~---~~pVLI~GE~GtGK~~lAr~IH~~S~r~~~pfi~vnc~~~~~-~~le~~LFG~~~g 76 (168)
T pfam00158 1 LIGESPAMQEVLELAKRVAPT---DATVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPE-ELLESELFGHEKG 76 (168)
T ss_pred CEECCHHHHHHHHHHHHHHCC---CCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCH-HHHHHHHCCCCCC
T ss_conf 973899999999999999588---998899899988889999999985243568831256789987-7999987587667
Q ss_pred ---------HHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCC
Q ss_conf ---------6666641016378887576169899999999863475100256787652000466740055204554
Q gi|254780552|r 97 ---------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163 (334)
Q Consensus 97 ---------~~~~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~ 163 (334)
T Consensus 77 ~f~ga~~~~~G~le~A-~gGTL~LdeI~~L~~~~Q~~Ll~~L~~~~~~~~-g~---~~~~~---~~vRiIast~~~ 144 (168)
T pfam00158 77 AFTGAVSDRKGLFELA-DGGTLFLDEIGELPLELQAKLLRVLQEGEFERV-GG---TKPIK---VDVRIIAATNRD 144 (168)
T ss_pred CCCCCCCCCCCCEEEC-CCCEEECCCHHHCCHHHHHHHHHHHHCCEEEEC-CC---CCEEE---EEEEEEEECCCC
T ss_conf 6689875789964226-998788024413999999999999857969977-99---84588---854999965988