HHsearch alignment for GI: 254780552 and conserved domain: pfam00158

>pfam00158 Sigma54_activat Sigma-54 interaction domain.
Probab=99.20  E-value=5.6e-11  Score=86.63  Aligned_cols=122  Identities=23%  Similarity=0.339  Sum_probs=78.6

Q ss_pred             HCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCCCCCCCHHHH----------
Q ss_conf             2397999999999999866146776707997378855778999999861---898531257644334676----------
Q gi|254780552|r   30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---GVNFRSTSGPVIAKAGDL----------   96 (334)
Q Consensus        30 viGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s~~~~~~~~dl----------   96 (334)
T Consensus         1 lIG~S~~m~~l~~~i~~~a~~---~~pVLI~GE~GtGK~~lAr~IH~~S~r~~~pfi~vnc~~~~~-~~le~~LFG~~~g   76 (168)
T pfam00158         1 LIGESPAMQEVLELAKRVAPT---DATVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPE-ELLESELFGHEKG   76 (168)
T ss_pred             CEECCHHHHHHHHHHHHHHCC---CCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCH-HHHHHHHCCCCCC
T ss_conf             973899999999999999588---998899899988889999999985243568831256789987-7999987587667


Q ss_pred             ---------HHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCC
Q ss_conf             ---------6666641016378887576169899999999863475100256787652000466740055204554
Q gi|254780552|r   97 ---------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV  163 (334)
Q Consensus        97 ---------~~~~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~  163 (334)
T Consensus        77 ~f~ga~~~~~G~le~A-~gGTL~LdeI~~L~~~~Q~~Ll~~L~~~~~~~~-g~---~~~~~---~~vRiIast~~~  144 (168)
T pfam00158        77 AFTGAVSDRKGLFELA-DGGTLFLDEIGELPLELQAKLLRVLQEGEFERV-GG---TKPIK---VDVRIIAATNRD  144 (168)
T ss_pred             CCCCCCCCCCCCEEEC-CCCEEECCCHHHCCHHHHHHHHHHHHCCEEEEC-CC---CCEEE---EEEEEEEECCCC
T ss_conf             6689875789964226-998788024413999999999999857969977-99---84588---854999965988