HHsearch alignment for GI: 254780552 and conserved domain: pfam05491
>pfam05491 RuvB_C Holliday junction DNA helicase ruvB C-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family consists of the C-terminal region of the RuvB protein which is thought to be helicase DNA-binding domain.
Probab=99.75 E-value=1.9e-18 Score=132.28 Aligned_cols=74 Identities=59% Similarity=1.141 Sum_probs=72.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf 00004677688999999751866206999999828745674678999999834305871899999988866488
Q gi|254780552|r 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 (334)
Q Consensus 256 d~~Gl~~~d~~~L~~l~~~~~~g~~~~~~isA~~ks~RgS~~daa~~yL~r~g~~~~~prgRrL~~~a~EdiGl 329 (334)
T Consensus 1 D~~GLd~~D~~yL~~l~~~f~ggPvGl~tla~~l~e~~~TiE~viEPyLi~~G~i~RTprGR~~T~~~~~~l~~ 74 (75)
T pfam05491 1 DELGLDEMDRRYLETLIEKFGGGPVGLDTLAAALGEERDTIEDVIEPYLIQIGFIQRTPRGRVATPKAYEHLGL 74 (75)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHCCC
T ss_conf 98777899999999999970899712999999986874089998439999954432088548866999988389