HHsearch alignment for GI: 254780552 and conserved domain: pfam07724
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=99.47 E-value=1e-13 Score=103.45 Aligned_cols=103 Identities=24% Similarity=0.295 Sum_probs=68.8
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCC---CCCCCCCCCCCCHHHHHH---------------HHH---HHHCCCHHHH
Q ss_conf 7670799737885577899999986189---853125764433467666---------------666---4101637888
Q gi|254780552|r 53 ALDHVLFVGPPGLGKTTLAQVVARELGV---NFRSTSGPVIAKAGDLAA---------------LLT---NLEDRDVLFI 111 (334)
Q Consensus 53 ~~~h~Lf~GPpG~GKTtlA~iiA~~l~~---~~~~~s~~~~~~~~dl~~---------------~~~---~~~~~~vlfi 111 (334)
T Consensus 2 p~~~~l~~GPsGvGKT~lAk~la~~l~~~~~~~i~~dm~e~~~~~~v~~l~g~~~gyvg~~~~G~l~~~v~~~p~~Vill 81 (168)
T pfam07724 2 PIGSFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSIVLI 81 (168)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCEEEE
T ss_conf 83799988989989999999999996798534488557565425699987058998726242650789998389848986
Q ss_pred HHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCC
Q ss_conf 7576169899999999863475100256787652000466740055204554
Q gi|254780552|r 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163 (334)
Q Consensus 112 DEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~ 163 (334)
T Consensus 82 DEIeKa~~~V~~~LL~ild~g~~~d--~-----~g~~v~~~n~i~i~-Tsn~ 125 (168)
T pfam07724 82 DEIEKAHPGVQNDLLQILEGGTLTD--K-----QGRKVDFRNTLFIM-TGNF 125 (168)
T ss_pred HHHHHHCHHHHHHHHHHCCCCCEEC--C-----CCCEEECCCEEEEE-CCCC
T ss_conf 5776658999999998705870636--9-----99678446479997-6873