HHsearch alignment for GI: 254780552 and conserved domain: smart00350
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.42 E-value=5.1e-12 Score=92.99 Aligned_cols=159 Identities=21% Similarity=0.304 Sum_probs=94.7
Q ss_pred HHCCHHHHHHHHHHHHHHH---------HHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHH-----
Q ss_conf 8239799999999999986---------61467767079973788557789999998618985312576443346-----
Q gi|254780552|r 29 EFTGQVEACSNLKVFIEAA---------KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----- 94 (334)
Q Consensus 29 dviGQ~~~~~~l~~~i~a~---------~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~~----- 94 (334)
T Consensus 204 ~I~G~~~vK~allL~L~GG~~~~~~~g~~~Rg~--ihiLLvGDPGtgKSqlLk~~~~iaprs-vytsG~gsS~aGLTaav 280 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGD--INILLLGDPGTAKSQLLKYVEKTAPRA-VYTTGKGSSAVGLTAAV 280 (509)
T ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCC--EEEEEECCCCCCHHHHHHHHHHHCCCE-EEEECCCCCCCCCEEEE
T ss_conf 323878899999999708876648988504154--149984699823629999999858860-68734445557706899
Q ss_pred --HH--------HHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCC-
Q ss_conf --76--------6666641016378887576169899999999863475100256787652000466740055204554-
Q gi|254780552|r 95 --DL--------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV- 163 (334)
Q Consensus 95 --dl--------~~~~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~- 163 (334)
T Consensus 281 ~rd~~~ge~~leaGALV-lAD~GiccIDEfdKm~~~dr~alhEaMEQQtisi--aKaG--i~~tL~-aR~sVlAAaNP~~ 354 (509)
T smart00350 281 TRDPETREFTLEGGALV-LADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISI--AKAG--ITTTLN-ARCSVLAAANPIG 354 (509)
T ss_pred EECCCCCCEEECCCCEE-CCCCCEEEEEEHHHCCHHHHHHHHHHHHHCEEEE--ECCC--EEEEEE-CCCEEEEEECCCC
T ss_conf 98178883787256412-0567547852132078778999999997487787--4375--179985-5735998655655
Q ss_pred ------------CCCCHHHHHCCCCEEECC-CCCHHHHHHHHHHHH
Q ss_conf ------------335545442012067326-454799999877765
Q gi|254780552|r 164 ------------GLLTNPLQDRFGIPIRLN-FYEIEDLKTIVQRGA 196 (334)
Q Consensus 164 ------------~~l~~~l~sR~~~~~~~~-~~~~~el~~il~~~~ 196 (334)
T Consensus 355 g~yd~~~s~~eni~l~~~LLSRFDLIf~l~D~~~~~~D~~ia~hil 400 (509)
T smart00350 355 GRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVV 400 (509)
T ss_pred CCCCCCCCHHHHCCCCHHHHHHCCEEEEEECCCCHHHHHHHHHHHH
T ss_conf 6378889999946898035410238999615898788999999999