RPSBLAST alignment for GI: 254780552 and conserved domain: TIGR00635

>gnl|CDD|129721 TIGR00635, ruvB, Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. Length = 305

 Score =  427 bits (1099), Expect = e-120
 Identities = 183/305 (60%), Positives = 236/305 (77%)

Query: 25  RTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRS 84
           + L EF GQ +    L++FIEAAK R EALDH+L  GPPGLGKTTLA ++A E+GVN + 
Sbjct: 1   KLLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKI 60

Query: 85  TSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSA 144
           TSGP + K GDLAA+LTNLE+ DVLFIDEIHRLS  VEE+LYPAMEDF+LD+++G+GPSA
Sbjct: 61  TSGPALEKPGDLAAILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSA 120

Query: 145 RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVT 204
           RSV+++L  FTL+ ATTR G+LT+PL+DRFGI +RL FY +E+L  IV R A L  + + 
Sbjct: 121 RSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIE 180

Query: 205 DEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLD 264
            EAA EIA RSRGTPRIA RLLRRVRDFA+V   K I R+IA  AL  L ID++G D++D
Sbjct: 181 PEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALKALEMLMIDELGLDEID 240

Query: 265 LRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAW 324
            + L+++   F GGPVG++T++A L E  D IED+ EPY++Q GF+QRTPRGR+   +A+
Sbjct: 241 RKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRTPRGRIATELAY 300

Query: 325 QHLGI 329
           +HLG+
Sbjct: 301 EHLGL 305