HHsearch alignment for GI: 254780553 and conserved domain: COG0258
>COG0258 Exo 5'-3' exonuclease (including N-terminal domain of PolI) [DNA replication, recombination, and repair].
Probab=92.31 E-value=0.095 Score=32.30 Aligned_cols=93 Identities=18% Similarity=0.236 Sum_probs=50.7
Q ss_pred EEEEECCHHHHHHCC-CCCCEEEEEEE-----EEECCCCEEEEEEECHHHH-HHHHHHHHHH-HCCCHHHHHHHCCCCHH
Q ss_conf 238970868898502-47984999999-----9973884189997067799-9999985010-00510112443157899
Q gi|254780553|r 25 CYIIYCPIRTLSCLG-KIGDFCTLFVE-----THMRQDQIRLFGFLSDLDR-QWFMLLQSVQ-GVGARVAMGVLSRITAT 96 (207)
Q Consensus 25 GY~i~vs~~~~~~l~-~~g~~v~l~~~-----~~vrEd~~~LyGF~~~~Er-~~F~~Li~V~-GIGpK~AL~iLs~l~~~ 96 (207)
T Consensus 117 G~eadd~i~t~A~~a~~~g~~~~I~S~DkD~lql~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~p~------------ 184 (310)
T COG0258 117 GIEADDPIETLAQKAYKKGDVVLIISGDKDLLQLVSPNVLVINGKKGEPEKFLDLEEVEEKFKGLTPE------------ 184 (310)
T ss_pred CCCCCCCCCHHHHHHHHCCCCEEEEECCCCEEEECCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCHH------------
T ss_conf 96831444089999886499579997896700114896178625778852348999999985699989------------
Q ss_pred HHHHH-HHCCC-HHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 99999-85156-68751045711679999999974
Q gi|254780553|r 97 ELVES-IILQN-SKVIAQIPGISMKIASRIMTELK 129 (207)
Q Consensus 97 ~l~~a-I~~~D-~~~L~~vpGIGkKtA~rIi~ELk 129 (207)
T Consensus 185 qliD~~~L~Gd~sDnipGV~GIG~ktA~~Ll~~~g 219 (310)
T COG0258 185 QLIDLKALVGDSSDNIPGVKGIGPKTALKLLQEYG 219 (310)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 98899998296535789999838999999999838