HHsearch alignment for GI: 254780553 and conserved domain: COG0272
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair].
Probab=92.31 E-value=0.41 Score=28.10 Aligned_cols=73 Identities=21% Similarity=0.361 Sum_probs=51.4
Q ss_pred CCCCEEEEEEECHHHHHHH--------------HHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHH
Q ss_conf 3884189997067799999--------------99850100051011244315789999999851566875104571167
Q gi|254780553|r 54 RQDQIRLFGFLSDLDRQWF--------------MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 (207)
Q Consensus 54 rEd~~~LyGF~~~~Er~~F--------------~~Li~V~GIGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkK 119 (207)
T Consensus 478 ~~~l~~l~~~~~ks~~nLl~aIe~sK~~~l~r~l~aLGIr~VG~~~Ak~La~~f~s---l~~l~~a~~e~l~~i~giG~~ 554 (667)
T COG0272 478 EEDLLSLEGFGEKSAENLLNAIEKSKKQPLARFLYALGIRHVGETTAKSLARHFGT---LEALLAASEEELASIPGIGEV 554 (667)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHH---HHHHHHCCHHHHHHCCCHHHH
T ss_conf 98884162244657999999999860498999999879711408999999987602---999984299999506661289
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999974
Q gi|254780553|r 120 IASRIMTELK 129 (207)
Q Consensus 120 tA~rIi~ELk 129 (207)
T Consensus 555 vA~si~~ff~ 564 (667)
T COG0272 555 VARSIIEFFA 564 (667)
T ss_pred HHHHHHHHHC
T ss_conf 9999999972