HHsearch alignment for GI: 254780553 and conserved domain: COG0272

>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair].
Probab=92.31  E-value=0.41  Score=28.10  Aligned_cols=73  Identities=21%  Similarity=0.361  Sum_probs=51.4

Q ss_pred             CCCCEEEEEEECHHHHHHH--------------HHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHH
Q ss_conf             3884189997067799999--------------99850100051011244315789999999851566875104571167
Q gi|254780553|r   54 RQDQIRLFGFLSDLDRQWF--------------MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK  119 (207)
Q Consensus        54 rEd~~~LyGF~~~~Er~~F--------------~~Li~V~GIGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkK  119 (207)
T Consensus       478 ~~~l~~l~~~~~ks~~nLl~aIe~sK~~~l~r~l~aLGIr~VG~~~Ak~La~~f~s---l~~l~~a~~e~l~~i~giG~~  554 (667)
T COG0272         478 EEDLLSLEGFGEKSAENLLNAIEKSKKQPLARFLYALGIRHVGETTAKSLARHFGT---LEALLAASEEELASIPGIGEV  554 (667)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHH---HHHHHHCCHHHHHHCCCHHHH
T ss_conf             98884162244657999999999860498999999879711408999999987602---999984299999506661289


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999974
Q gi|254780553|r  120 IASRIMTELK  129 (207)
Q Consensus       120 tA~rIi~ELk  129 (207)
T Consensus       555 vA~si~~ff~  564 (667)
T COG0272         555 VARSIIEFFA  564 (667)
T ss_pred             HHHHHHHHHC
T ss_conf             9999999972