HHsearch alignment for GI: 254780553 and conserved domain: COG0322

>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair].
Probab=91.07  E-value=0.17  Score=30.67  Aligned_cols=54  Identities=22%  Similarity=0.439  Sum_probs=35.2

Q ss_pred             HHHHHH-HHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHH
Q ss_conf             999999-9850100051011244315789999999851566875104571167999999
Q gi|254780553|r   68 DRQWFM-LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM  125 (207)
Q Consensus        68 Er~~F~-~Li~V~GIGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi  125 (207)
T Consensus       524 ~k~~~~s~Ld~I~GiG~~r~~~LL~~Fgs---~~~i~~As~eel~~v-gi~~~~a~~i~  578 (581)
T COG0322         524 SKAMLQSSLDDIPGIGPKRRKALLKHFGS---LKGIKSASVEELAKV-GISKKLAEKIY  578 (581)
T ss_pred             HHHHHCCCCCCCCCCCHHHHHHHHHHHHC---HHHHHHCCHHHHHHC-CCCHHHHHHHH
T ss_conf             66640270004888688999999998317---888885599999874-99999999998