HHsearch alignment for GI: 254780553 and conserved domain: COG0322
>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair].
Probab=91.07 E-value=0.17 Score=30.67 Aligned_cols=54 Identities=22% Similarity=0.439 Sum_probs=35.2
Q ss_pred HHHHHH-HHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHH
Q ss_conf 999999-9850100051011244315789999999851566875104571167999999
Q gi|254780553|r 68 DRQWFM-LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 (207)
Q Consensus 68 Er~~F~-~Li~V~GIGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi 125 (207)
T Consensus 524 ~k~~~~s~Ld~I~GiG~~r~~~LL~~Fgs---~~~i~~As~eel~~v-gi~~~~a~~i~ 578 (581)
T COG0322 524 SKAMLQSSLDDIPGIGPKRRKALLKHFGS---LKGIKSASVEELAKV-GISKKLAEKIY 578 (581)
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHC---HHHHHHCCHHHHHHC-CCCHHHHHHHH
T ss_conf 66640270004888688999999998317---888885599999874-99999999998