HHsearch alignment for GI: 254780553 and conserved domain: TIGR00575

>TIGR00575 dnlj DNA ligase, NAD-dependent; InterPro: IPR001679 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalyzing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase: one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC). This family is predominantly composed of NAD-dependent bacterial DNA ligases. They are proteins of about 75 to 85 Kd whose sequence is well conserved , . They also show similarity to yicF, an Escherichia coli hypothetical protein of 63 Kd.; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair.
Probab=93.79  E-value=0.072  Score=33.13  Aligned_cols=137  Identities=16%  Similarity=0.206  Sum_probs=88.0

Q ss_pred             EEEECCEEEEEECCHHHHHHCCCCCCEEEEEEEEEECCCCEEEEE-EECHHHHHH-----------HHHH---HHHHHCC
Q ss_conf             998588323897086889850247984999999997388418999-706779999-----------9998---5010005
Q gi|254780553|r   18 LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFG-FLSDLDRQW-----------FMLL---QSVQGVG   82 (207)
Q Consensus        18 vi~v~GvGY~i~vs~~~~~~l~~~g~~v~l~~~~~vrEd~~~LyG-F~~~~Er~~-----------F~~L---i~V~GIG   82 (207)
T Consensus       454 AmdI~GLG~~~I~~--LfE~-~Lv~~~~DLY~L~~k~~~Ll~le~~~g~~sa~nLl~aIe~sK~~pl~RlL~aLGIr~VG  530 (706)
T TIGR00575       454 AMDIDGLGEKVIEQ--LFEE-KLVRSVADLYALKEKLEDLLELEGKFGEKSAQNLLSAIEKSKKKPLARLLFALGIRHVG  530 (706)
T ss_pred             CCCCCCCCHHHHHH--HHHC-CCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf             03322223899999--9872-66678566657788999987064035568899999999985210489999862860357


Q ss_pred             CHHHHHHHCCC-CHHHHHHHHHC-------CCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             10112443157-89999999851-------56687510457116799999999742221101133443233333445555
Q gi|254780553|r   83 ARVAMGVLSRI-TATELVESIIL-------QNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC  154 (207)
Q Consensus        83 pK~AL~iLs~l-~~~~l~~aI~~-------~D~~~L~~vpGIGkKtA~rIi~ELk~K~~~~~~~~~~~~~~~~~~~~~~~  154 (207)
T Consensus       531 ~~~A~~La~~f~tl~~L~~A~~e~~~~~~~f~~s~L~~~~g~G~~vA~~~~~~F~~~~~---------~---------~~  592 (706)
T TIGR00575       531 EVTAKLLAKHFGTLDKLKAASLETLESIYQFDRSELLSVEGVGPKVAESIVNFFHDPNN---------L---------SL  592 (706)
T ss_pred             HHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHCCCC---------C---------CC
T ss_conf             99999999855886899850821677887516055641014027899999998712000---------1---------35


Q ss_pred             CCCCHHHHHHHHHHHCCCCHHH
Q ss_conf             6531589999999967999899
Q gi|254780553|r  155 SMPSFAINAISALVNLGYGQDQ  176 (207)
Q Consensus       155 ~~~~~~~d~~~AL~~LGy~~~e  176 (207)
T Consensus       593 -qPYRta~~~~~L~~~gv~~~~  613 (706)
T TIGR00575       593 -QPYRTAELIEKLEELGVNMES  613 (706)
T ss_pred             -CHHHHHHHHHHHHHHHCCCHH
T ss_conf             -604689999999883163101