HHsearch alignment for GI: 254780553 and conserved domain: TIGR00575
>TIGR00575 dnlj DNA ligase, NAD-dependent; InterPro: IPR001679 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalyzing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase: one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC). This family is predominantly composed of NAD-dependent bacterial DNA ligases. They are proteins of about 75 to 85 Kd whose sequence is well conserved , . They also show similarity to yicF, an Escherichia coli hypothetical protein of 63 Kd.; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair.
Probab=93.79 E-value=0.072 Score=33.13 Aligned_cols=137 Identities=16% Similarity=0.206 Sum_probs=88.0
Q ss_pred EEEECCEEEEEECCHHHHHHCCCCCCEEEEEEEEEECCCCEEEEE-EECHHHHHH-----------HHHH---HHHHHCC
Q ss_conf 998588323897086889850247984999999997388418999-706779999-----------9998---5010005
Q gi|254780553|r 18 LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFG-FLSDLDRQW-----------FMLL---QSVQGVG 82 (207)
Q Consensus 18 vi~v~GvGY~i~vs~~~~~~l~~~g~~v~l~~~~~vrEd~~~LyG-F~~~~Er~~-----------F~~L---i~V~GIG 82 (207)
T Consensus 454 AmdI~GLG~~~I~~--LfE~-~Lv~~~~DLY~L~~k~~~Ll~le~~~g~~sa~nLl~aIe~sK~~pl~RlL~aLGIr~VG 530 (706)
T TIGR00575 454 AMDIDGLGEKVIEQ--LFEE-KLVRSVADLYALKEKLEDLLELEGKFGEKSAQNLLSAIEKSKKKPLARLLFALGIRHVG 530 (706)
T ss_pred CCCCCCCCHHHHHH--HHHC-CCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 03322223899999--9872-66678566657788999987064035568899999999985210489999862860357
Q ss_pred CHHHHHHHCCC-CHHHHHHHHHC-------CCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 10112443157-89999999851-------56687510457116799999999742221101133443233333445555
Q gi|254780553|r 83 ARVAMGVLSRI-TATELVESIIL-------QNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC 154 (207)
Q Consensus 83 pK~AL~iLs~l-~~~~l~~aI~~-------~D~~~L~~vpGIGkKtA~rIi~ELk~K~~~~~~~~~~~~~~~~~~~~~~~ 154 (207)
T Consensus 531 ~~~A~~La~~f~tl~~L~~A~~e~~~~~~~f~~s~L~~~~g~G~~vA~~~~~~F~~~~~---------~---------~~ 592 (706)
T TIGR00575 531 EVTAKLLAKHFGTLDKLKAASLETLESIYQFDRSELLSVEGVGPKVAESIVNFFHDPNN---------L---------SL 592 (706)
T ss_pred HHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHCCCC---------C---------CC
T ss_conf 99999999855886899850821677887516055641014027899999998712000---------1---------35
Q ss_pred CCCCHHHHHHHHHHHCCCCHHH
Q ss_conf 6531589999999967999899
Q gi|254780553|r 155 SMPSFAINAISALVNLGYGQDQ 176 (207)
Q Consensus 155 ~~~~~~~d~~~AL~~LGy~~~e 176 (207)
T Consensus 593 -qPYRta~~~~~L~~~gv~~~~ 613 (706)
T TIGR00575 593 -QPYRTAELIEKLEELGVNMES 613 (706)
T ss_pred -CHHHHHHHHHHHHHHHCCCHH
T ss_conf -604689999999883163101