HHsearch alignment for GI: 254780553 and conserved domain: TIGR01259
>TIGR01259 comE comEA protein; InterPro: IPR004787 The comE locus is obligatory for bacterial cell competence - the process of internalizing the exogenous added DNA. comEA and comEC are required for transformability, whereas the products of comEB and of the overlapping comER, which is transcribed in the reverse direction, are dispensable . ComEA has been shown to be an integral membrane protein, as predicted from hydropathy analysis, with its C-terminal domain outside the cytoplasmic membrane. This C-terminal domain possesses a sequence with similarity to those of several proteins known to be involved in nucleic acid transactions including UvrC and a human protein that binds to the replication origin of the Human herpesvirus 4 (Epstein-Barr virus) ..
Probab=95.95 E-value=0.0014 Score=44.57 Aligned_cols=50 Identities=16% Similarity=0.287 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHH
Q ss_conf 9999985010005101124431578999999985156687510457116799999
Q gi|254780553|r 70 QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 (207)
Q Consensus 70 ~~F~~Li~V~GIGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rI 124 (207)
T Consensus 69 As~~EL~~l~GiGP~kA~aIi~Y-Re~----nG~F~SvddL~kVsGIG~k~~eKL 118 (124)
T TIGR01259 69 ASLEELQALPGIGPAKAKAIIEY-REE----NGAFKSVDDLTKVSGIGEKSLEKL 118 (124)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHH-HHH----CCCCCCHHHHHCCCCCCHHHHHHH
T ss_conf 78999863699981337999999-985----699777555003578854668742