HHsearch alignment for GI: 254780553 and conserved domain: TIGR01448

>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=97.64  E-value=0.00023  Score=49.71  Aligned_cols=128  Identities=16%  Similarity=0.199  Sum_probs=88.2

Q ss_pred             HHHHHCCCCCCEEEEEEEEEECCCCEEEEEEECHHH---------HHH--HHHHHHHHHCCCHHHHHHHCCCCHHHHHHH
Q ss_conf             889850247984999999997388418999706779---------999--999850100051011244315789999999
Q gi|254780553|r   33 RTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLD---------RQW--FMLLQSVQGVGARVAMGVLSRITATELVES  101 (207)
Q Consensus        33 ~~~~~l~~~g~~v~l~~~~~vrEd~~~LyGF~~~~E---------r~~--F~~Li~V~GIGpK~AL~iLs~l~~~~l~~a  101 (207)
T Consensus        43 s~l~~~-~~G~~~~f~Gq~~~h~~yG~q~~~~~~~~~amP~~~~~~gi~~Yl~S~~~KGvGk~~Aq~Iv~TfGe~~~--~  119 (769)
T TIGR01448        43 SVLAAL-AEGDSYTFEGQWEEHAKYGKQFKAERMEKEAMPAPTSKEGIVAYLSSSSIKGVGKKLAQRIVETFGEAAI--D  119 (769)
T ss_pred             CCCCCC-CCCCEEEEEEEEEECCCCCEEEEEEEEHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH--H
T ss_conf             546753-0166156889888875445152335201430788650678765552254167205778999998769999--8


Q ss_pred             HHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             85156687510457116799999999742221101133443233333445555653158999999996799989999999
Q gi|254780553|r  102 IILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV  181 (207)
Q Consensus       102 I~~~D~~~L~~vpGIGkKtA~rIi~ELk~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~AL~~LGy~~~ea~~ai  181 (207)
T Consensus       120 ~l~~~P~kL~~V~G~s~~~~~~~~~~~~~~~--------------------------~~~~~l~~L~~lG~~~~l~~~~~  173 (769)
T TIGR01448       120 VLDDDPEKLLEVSGISKANLEKIVSQLSKQK--------------------------DERKLLLKLQQLGIGIKLALRIY  173 (769)
T ss_pred             HHHCCCHHEEEECCCCHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             8740860103307756677899999999755--------------------------89999999985387678999999


Q ss_pred             HHHHHHCC
Q ss_conf             99985168
Q gi|254780553|r  182 VSVLKKEK  189 (207)
Q Consensus       182 ~~i~~~~~  189 (207)
T Consensus       174 k~y~eadP  181 (769)
T TIGR01448       174 KFYREADP  181 (769)
T ss_pred             HHHCCCCC
T ss_conf             98403587