HHsearch alignment for GI: 254780553 and conserved domain: TIGR01448
>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=97.64 E-value=0.00023 Score=49.71 Aligned_cols=128 Identities=16% Similarity=0.199 Sum_probs=88.2
Q ss_pred HHHHHCCCCCCEEEEEEEEEECCCCEEEEEEECHHH---------HHH--HHHHHHHHHCCCHHHHHHHCCCCHHHHHHH
Q ss_conf 889850247984999999997388418999706779---------999--999850100051011244315789999999
Q gi|254780553|r 33 RTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLD---------RQW--FMLLQSVQGVGARVAMGVLSRITATELVES 101 (207)
Q Consensus 33 ~~~~~l~~~g~~v~l~~~~~vrEd~~~LyGF~~~~E---------r~~--F~~Li~V~GIGpK~AL~iLs~l~~~~l~~a 101 (207)
T Consensus 43 s~l~~~-~~G~~~~f~Gq~~~h~~yG~q~~~~~~~~~amP~~~~~~gi~~Yl~S~~~KGvGk~~Aq~Iv~TfGe~~~--~ 119 (769)
T TIGR01448 43 SVLAAL-AEGDSYTFEGQWEEHAKYGKQFKAERMEKEAMPAPTSKEGIVAYLSSSSIKGVGKKLAQRIVETFGEAAI--D 119 (769)
T ss_pred CCCCCC-CCCCEEEEEEEEEECCCCCEEEEEEEEHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH--H
T ss_conf 546753-0166156889888875445152335201430788650678765552254167205778999998769999--8
Q ss_pred HHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 85156687510457116799999999742221101133443233333445555653158999999996799989999999
Q gi|254780553|r 102 IILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 (207)
Q Consensus 102 I~~~D~~~L~~vpGIGkKtA~rIi~ELk~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~AL~~LGy~~~ea~~ai 181 (207)
T Consensus 120 ~l~~~P~kL~~V~G~s~~~~~~~~~~~~~~~--------------------------~~~~~l~~L~~lG~~~~l~~~~~ 173 (769)
T TIGR01448 120 VLDDDPEKLLEVSGISKANLEKIVSQLSKQK--------------------------DERKLLLKLQQLGIGIKLALRIY 173 (769)
T ss_pred HHHCCCHHEEEECCCCHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 8740860103307756677899999999755--------------------------89999999985387678999999
Q ss_pred HHHHHHCC
Q ss_conf 99985168
Q gi|254780553|r 182 VSVLKKEK 189 (207)
Q Consensus 182 ~~i~~~~~ 189 (207)
T Consensus 174 k~y~eadP 181 (769)
T TIGR01448 174 KFYREADP 181 (769)
T ss_pred HHHCCCCC
T ss_conf 98403587