HHsearch alignment for GI: 254780553 and conserved domain: pfam00633
>pfam00633 HHH Helix-hairpin-helix motif. The helix-hairpin-helix DNA-binding motif is found to be duplicated in the central domain of RuvA. The HhH domain of DisA, a bacterial checkpoint control protein, is a DNA-binding domain.
Probab=94.62 E-value=0.019 Score=36.91 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=20.1
Q ss_pred HHHCCCHHHHHHCCCCCHHHHHHHH
Q ss_conf 9851566875104571167999999
Q gi|254780553|r 101 SIILQNSKVIAQIPGISMKIASRIM 125 (207)
Q Consensus 101 aI~~~D~~~L~~vpGIGkKtA~rIi 125 (207)
T Consensus 4 ~~~~as~eeL~~lpGVG~~tA~~I~ 28 (30)
T pfam00633 4 GLIPASREELLALPGVGPKTAEAIL 28 (30)
T ss_pred CCCCCCHHHHHHCCCCCHHHHHHHH
T ss_conf 4352359999728897768899885