HHsearch alignment for GI: 254780553 and conserved domain: pfam00633

>pfam00633 HHH Helix-hairpin-helix motif. The helix-hairpin-helix DNA-binding motif is found to be duplicated in the central domain of RuvA. The HhH domain of DisA, a bacterial checkpoint control protein, is a DNA-binding domain.
Probab=94.62  E-value=0.019  Score=36.91  Aligned_cols=25  Identities=24%  Similarity=0.476  Sum_probs=20.1

Q ss_pred             HHHCCCHHHHHHCCCCCHHHHHHHH
Q ss_conf             9851566875104571167999999
Q gi|254780553|r  101 SIILQNSKVIAQIPGISMKIASRIM  125 (207)
Q Consensus       101 aI~~~D~~~L~~vpGIGkKtA~rIi  125 (207)
T Consensus         4 ~~~~as~eeL~~lpGVG~~tA~~I~   28 (30)
T pfam00633         4 GLIPASREELLALPGVGPKTAEAIL   28 (30)
T ss_pred             CCCCCCHHHHHHCCCCCHHHHHHHH
T ss_conf             4352359999728897768899885