HHsearch alignment for GI: 254780553 and conserved domain: pfam07499
>pfam07499 RuvA_C RuvA, C-terminal domain. Homologous recombination is a crucial process in all living organisms. In bacteria, this process the RuvA, RuvB, and RuvC proteins are involved. More specifically the proteins process the Holliday junction DNA. RuvA is comprised of three distinct domains. The domain represents the C-terminal domain and plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB. Within the Holliday junction, the C-terminal domain makes no interaction with DNA.
Probab=98.53 E-value=2.5e-07 Score=69.57 Aligned_cols=46 Identities=39% Similarity=0.499 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
Q ss_conf 589999999967999899999999998516888898999999999745
Q gi|254780553|r 159 FAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 (207)
Q Consensus 159 ~~~d~~~AL~~LGy~~~ea~~ai~~i~~~~~~~~~~eelIk~aLk~Ls 206 (207)
T Consensus 2 ~~~da~~AL~~LGy~~~ea~~av~~v~~--~~~~~~e~~Ir~ALk~L~ 47 (47)
T pfam07499 2 ALEEAVSALLALGYKEKEAEKAVAKVLE--DPGASVEELIRAALKLLS 47 (47)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHC
T ss_conf 5889999999939989999999999764--899999999999998719