HHsearch alignment for GI: 254780553 and conserved domain: smart00475
>smart00475 53EXOc 5'-3' exonuclease.
Probab=94.64 E-value=0.075 Score=32.98 Aligned_cols=36 Identities=25% Similarity=0.536 Sum_probs=19.8
Q ss_pred CHHHHH--HHHHCCCHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 899999--998515668751045711679999999974
Q gi|254780553|r 94 TATELV--ESIILQNSKVIAQIPGISMKIASRIMTELK 129 (207)
Q Consensus 94 ~~~~l~--~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk 129 (207)
T Consensus 170 ~P~q~~d~~aL~GD~sDnIpGV~GIG~KtA~kLL~~yg 207 (259)
T smart00475 170 TPEQIIDYKALMGDSSDNIPGVPGIGEKTAAKLLKEFG 207 (259)
T ss_pred CHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 98998637640464535899999847899999999839