Query gi|254780553|ref|YP_003064966.1| Holliday junction DNA helicase RuvA [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 207
No_of_seqs 117 out of 1856
Neff 6.5
Searched_HMMs 33803
Date Wed Jun 1 19:36:13 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780553.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1ixr_A Holliday junction DNA 100.0 0 0 362.4 14.6 191 1-206 1-191 (191)
2 >1cuk_A RUVA protein; DNA repa 99.9 1.3E-23 3.7E-28 177.7 7.5 74 66-139 1-74 (79)
3 >2ztd_A Holliday junction ATP- 99.9 1.4E-23 4.2E-28 177.4 6.7 73 65-137 1-73 (75)
4 >1cuk_A RUVA protein; DNA repa 99.8 1.1E-18 3.2E-23 144.9 10.5 65 1-65 1-65 (65)
5 >2ztd_A Holliday junction ATP- 99.8 7.5E-18 2.2E-22 139.2 10.2 63 1-64 17-79 (79)
6 >1ixs_A Holliday junction DNA 98.7 2.8E-08 8.1E-13 75.5 6.1 52 153-205 10-61 (62)
7 >2ztd_A Holliday junction ATP- 98.7 4.6E-08 1.4E-12 74.0 6.9 51 155-206 5-55 (58)
8 >1cuk_A RUVA protein; DNA repa 98.5 1.3E-07 3.8E-12 71.0 5.5 50 153-205 9-58 (59)
9 >3c1y_A DNA integrity scanning 97.7 2.8E-05 8.4E-10 55.4 3.7 60 69-131 8-67 (74)
10 >1z00_A DNA excision repair pr 97.5 0.00012 3.6E-09 51.1 4.6 57 71-130 17-73 (89)
11 >1pzn_A RAD51, DNA repair and 97.4 6.1E-05 1.8E-09 53.2 1.9 62 66-131 28-91 (95)
12 >1kft_A UVRC, excinuclease ABC 97.4 0.00011 3.3E-09 51.4 3.0 57 70-129 20-77 (78)
13 >1vdd_A Recombination protein 96.8 0.00071 2.1E-08 46.1 2.7 23 107-129 11-33 (66)
14 >2w9m_A Polymerase X; SAXS, DN 96.7 0.0011 3.3E-08 44.8 2.8 52 73-124 57-113 (118)
15 >2fmp_A DNA polymerase beta; n 96.3 0.0021 6.2E-08 42.9 2.3 51 75-125 59-115 (119)
16 >2ihm_A POL MU, DNA polymerase 96.2 0.0016 4.8E-08 43.7 1.3 50 75-124 63-118 (129)
17 >1wcn_A Transcription elongati 95.9 0.0071 2.1E-07 39.4 3.5 56 73-130 7-62 (70)
18 >2nrt_A Uvrabc system protein 95.9 0.0062 1.8E-07 39.8 3.1 54 69-126 7-61 (64)
19 >1jms_A Terminal deoxynucleoti 95.8 0.0044 1.3E-07 40.8 2.1 88 83-200 62-151 (154)
20 >2a1j_A DNA repair endonucleas 95.2 0.018 5.2E-07 36.8 3.5 53 74-130 5-57 (63)
21 >1z00_B DNA repair endonucleas 95.0 0.014 4.2E-07 37.4 2.4 51 72-126 17-67 (71)
22 >1a76_A Flap endonuclease-1 pr 94.9 0.021 6.2E-07 36.3 3.2 37 94-130 1-38 (65)
23 >3c65_A Uvrabc system protein 94.8 0.0058 1.7E-07 40.0 0.0 53 72-128 172-224 (226)
24 >2bcq_A DNA polymerase lambda; 94.6 0.006 1.8E-07 39.9 -0.3 72 105-201 54-127 (128)
25 >1ngn_A Methyl-CPG binding pro 94.4 0.027 8.1E-07 35.5 2.6 45 76-126 78-122 (129)
26 >1b22_A DNA repair protein RAD 94.2 0.015 4.5E-07 37.2 1.0 58 73-132 25-82 (114)
27 >1rxw_A Flap structure-specifi 93.2 0.064 1.9E-06 33.1 2.7 36 95-130 2-37 (68)
28 >1exn_A 5'-exonuclease, 5'-nuc 93.1 0.09 2.7E-06 32.0 3.4 38 93-130 5-44 (80)
29 >1b43_A Protein (FEN-1); nucle 93.0 0.064 1.9E-06 33.0 2.5 38 93-130 10-48 (77)
30 >3bz1_U Photosystem II 12 kDa 92.9 0.042 1.2E-06 34.3 1.4 48 73-129 33-80 (104)
31 >3i0w_A 8-oxoguanine-DNA-glyco 92.8 0.073 2.2E-06 32.6 2.6 35 92-126 17-51 (58)
32 >1ixr_A Holliday junction DNA 92.4 0.29 8.6E-06 28.7 5.3 60 107-188 71-131 (191)
33 >1rxw_A Flap structure-specifi 92.3 0.052 1.5E-06 33.7 1.3 30 77-106 19-49 (68)
34 >3bzc_A TEX; helix-turn-helix, 92.0 0.22 6.5E-06 29.4 4.3 25 104-128 6-30 (70)
35 >2edu_A Kinesin-like protein K 92.0 0.33 9.7E-06 28.3 5.1 33 96-128 28-60 (98)
36 >1s5l_U Photosystem II 12 kDa 92.0 0.09 2.7E-06 32.0 2.2 22 105-126 13-34 (87)
37 >2izo_A FEN1, flap structure-s 91.9 0.065 1.9E-06 33.0 1.4 37 94-130 1-38 (82)
38 >2ziu_A MUS81 protein; helix-h 91.8 0.13 3.7E-06 31.1 2.8 59 70-128 5-75 (82)
39 >2duy_A Competence protein com 91.8 0.11 3.1E-06 31.6 2.4 25 102-126 21-45 (75)
40 >1a76_A Flap endonuclease-1 pr 91.7 0.052 1.5E-06 33.6 0.8 31 76-106 19-50 (65)
41 >1m3q_A 8-oxoguanine DNA glyco 91.5 0.24 7.1E-06 29.2 4.0 20 107-126 107-126 (133)
42 >3fsp_A A/G-specific adenine g 91.3 0.11 3.2E-06 31.6 2.0 23 104-126 81-103 (110)
43 >3e1s_A Exodeoxyribonuclease V 91.1 0.077 2.3E-06 32.5 1.2 60 67-129 6-65 (149)
44 >3bz1_U Photosystem II 12 kDa 91.0 0.13 3.9E-06 30.9 2.2 25 102-126 27-51 (104)
45 >1b43_A Protein (FEN-1); nucle 90.9 0.036 1.1E-06 34.7 -0.7 40 76-126 29-69 (77)
46 >2w9m_A Polymerase X; SAXS, DN 90.9 0.12 3.7E-06 31.1 2.0 41 84-129 38-78 (118)
47 >2duy_A Competence protein com 90.9 0.14 4.3E-06 30.7 2.3 45 72-125 26-70 (75)
48 >1exn_A 5'-exonuclease, 5'-nuc 90.7 0.071 2.1E-06 32.7 0.6 38 67-104 8-54 (80)
49 >3fhf_A Mjogg, N-glycosylase/D 90.6 0.38 1.1E-05 27.9 4.3 20 107-126 87-106 (113)
50 >1ul1_X Flap endonuclease-1; p 90.0 0.19 5.5E-06 30.0 2.3 39 92-130 13-51 (89)
51 >2izo_A FEN1, flap structure-s 89.8 0.063 1.9E-06 33.1 -0.3 30 76-105 19-49 (82)
52 >2bgw_A XPF endonuclease; hydr 89.7 0.2 6E-06 29.7 2.3 22 108-129 14-35 (49)
53 >3c1y_A DNA integrity scanning 89.6 0.68 2E-05 26.2 4.9 26 105-130 9-34 (74)
54 >1orn_A Endonuclease III; DNA 89.4 0.26 7.8E-06 28.9 2.7 20 105-124 83-102 (110)
55 >3bzc_A TEX; helix-turn-helix, 89.3 0.23 6.9E-06 29.3 2.3 49 72-126 9-58 (70)
56 >1kea_A Possible G-T mismatche 89.1 0.29 8.5E-06 28.7 2.7 20 105-124 84-103 (111)
57 >2h56_A DNA-3-methyladenine gl 89.0 0.12 3.5E-06 31.3 0.7 32 97-128 50-81 (156)
58 >1z00_B DNA repair endonucleas 89.0 0.24 7.2E-06 29.2 2.2 23 108-130 18-40 (71)
59 >1s5l_U Photosystem II 12 kDa 88.8 0.18 5.2E-06 30.1 1.4 48 73-129 16-63 (87)
60 >1pu6_A 3-methyladenine DNA gl 88.8 0.44 1.3E-05 27.4 3.5 25 102-126 93-117 (123)
61 >2ziu_B Crossover junction end 88.7 0.45 1.3E-05 27.4 3.5 60 70-129 11-88 (100)
62 >2abk_A Endonuclease III; DNA- 88.6 0.31 9.3E-06 28.4 2.6 53 72-126 50-105 (111)
63 >2a1j_A DNA repair endonucleas 88.5 0.25 7.4E-06 29.1 2.1 24 107-130 3-26 (63)
64 >2edu_A Kinesin-like protein K 88.5 0.32 9.3E-06 28.4 2.6 51 72-128 39-90 (98)
65 >1mpg_A ALKA, 3-methyladenine 88.4 0.29 8.6E-06 28.7 2.3 70 95-181 10-79 (127)
66 >1kg2_A A/G-specific adenine g 87.6 0.32 9.5E-06 28.4 2.2 31 100-130 15-45 (139)
67 >1ul1_X Flap endonuclease-1; p 86.5 0.4 1.2E-05 27.7 2.1 46 77-125 33-79 (89)
68 >1z00_A DNA excision repair pr 85.9 0.51 1.5E-05 27.0 2.4 53 107-184 18-71 (89)
69 >1x2i_A HEF helicase/nuclease; 85.8 0.48 1.4E-05 27.2 2.3 21 108-128 14-34 (49)
70 >2nrt_A Uvrabc system protein 85.6 0.58 1.7E-05 26.6 2.6 24 107-130 11-34 (64)
71 >1t94_A Polymerase (DNA direct 84.9 0.46 1.4E-05 27.3 1.8 28 94-124 1-28 (70)
72 >3i0w_A 8-oxoguanine-DNA-glyco 84.5 0.46 1.4E-05 27.3 1.6 26 65-90 25-50 (58)
73 >2kp7_A Crossover junction end 84.3 0.63 1.9E-05 26.4 2.3 24 105-128 55-78 (87)
74 >1wiv_A UBP14, ubiquitin-speci 83.9 1.8 5.2E-05 23.4 4.4 30 154-183 23-52 (73)
75 >2aq4_A DNA repair protein REV 83.8 0.55 1.6E-05 26.8 1.8 17 110-126 4-20 (67)
76 >2ztd_A Holliday junction ATP- 83.6 0.69 2E-05 26.1 2.2 59 108-188 9-68 (75)
77 >1kft_A UVRC, excinuclease ABC 83.6 0.47 1.4E-05 27.3 1.4 24 107-130 23-46 (78)
78 >2zkq_m 40S ribosomal protein 83.3 0.86 2.5E-05 25.5 2.6 22 108-129 28-49 (88)
79 >2qsf_X RAD23, UV excision rep 83.2 1.6 4.8E-05 23.7 4.0 31 154-184 20-50 (67)
80 >1x2i_A HEF helicase/nuclease; 83.1 0.58 1.7E-05 26.6 1.7 33 69-101 9-43 (49)
81 >1cuk_A RUVA protein; DNA repa 82.8 0.78 2.3E-05 25.8 2.2 60 108-189 8-68 (79)
82 >2bgw_A XPF endonuclease; hydr 82.2 0.44 1.3E-05 27.4 0.8 30 66-95 6-36 (49)
83 >3fhf_A Mjogg, N-glycosylase/D 82.1 0.61 1.8E-05 26.5 1.5 31 95-134 8-38 (113)
84 >2csb_A Topoisomerase V, TOP61 81.5 2 6E-05 23.0 4.0 30 99-128 73-102 (142)
85 >2i5h_A Hypothetical protein A 80.9 1 3.1E-05 24.9 2.3 30 105-134 129-159 (205)
86 >1oqy_A HHR23A, UV excision re 80.7 1.4 4E-05 24.2 2.9 28 156-183 13-40 (60)
87 >2jhn_A ALKA, 3-methyladenine 80.3 0.86 2.6E-05 25.5 1.7 19 107-125 30-48 (55)
88 >1wgn_A UBAP1, ubiquitin assoc 80.2 1.3 3.9E-05 24.3 2.6 30 155-184 14-43 (63)
89 >2dai_A Ubadc1, ubiquitin asso 79.6 2.8 8.4E-05 22.1 4.2 29 155-183 24-52 (83)
90 >2g3q_A Protein YBL047C; endoc 79.5 2.5 7.4E-05 22.4 3.9 26 159-184 3-28 (43)
91 >1vg5_A RSGI RUH-014, rhomboid 79.3 3.4 9.9E-05 21.6 4.5 29 156-184 25-53 (73)
92 >2zbk_B Type 2 DNA topoisomera 79.0 1.3 3.7E-05 24.4 2.3 36 94-129 9-50 (82)
93 >1jx4_A DNA polymerase IV (fam 78.7 0.92 2.7E-05 25.3 1.5 13 113-125 1-13 (55)
94 >3i1m_M 30S ribosomal protein 78.4 1.3 3.8E-05 24.4 2.1 21 108-128 17-37 (63)
95 >1ify_A HHR23A, UV excision re 78.3 2.8 8.3E-05 22.1 3.9 27 157-183 5-31 (49)
96 >1oqy_A HHR23A, UV excision re 78.0 4.2 0.00012 20.9 4.7 30 155-184 38-67 (99)
97 >2vqe_M 30S ribosomal protein 76.4 1 3.1E-05 24.9 1.2 21 108-128 17-37 (64)
98 >1wji_A Tudor domain containin 76.0 3.1 9.3E-05 21.8 3.6 24 160-183 9-32 (63)
99 >1vek_A UBP14, ubiquitin-speci 75.0 4.6 0.00014 20.7 4.2 27 158-184 27-53 (84)
100 >2cpw_A CBL-interacting protei 74.3 2.3 6.8E-05 22.6 2.5 24 161-184 20-43 (64)
101 >1veg_A NEDD8 ultimate buster- 73.5 4.2 0.00012 20.9 3.7 27 157-183 26-52 (83)
102 >2w9m_A Polymerase X; SAXS, DN 71.6 4.3 0.00013 20.8 3.4 34 94-130 2-35 (123)
103 >3ihp_A Ubiquitin carboxyl-ter 70.5 5.1 0.00015 20.4 3.6 25 159-183 13-37 (75)
104 >2dak_A Ubiquitin carboxyl-ter 70.5 4.4 0.00013 20.8 3.2 25 159-183 8-32 (63)
105 >3ihp_A Ubiquitin carboxyl-ter 69.4 3.4 0.0001 21.5 2.5 25 159-183 15-39 (70)
106 >1dgs_A DNA ligase; AMP comple 67.3 1.7 5E-05 23.6 0.6 12 76-87 18-29 (116)
107 >2dag_A Ubiquitin carboxyl-ter 66.6 6 0.00018 19.9 3.3 24 161-184 10-33 (74)
108 >1dv0_A DNA repair protein HHR 62.9 3 8.9E-05 21.9 1.2 23 161-183 5-27 (47)
109 >1whc_A RSGI RUH-027, UBA/UBX 60.5 6.8 0.0002 19.5 2.6 23 162-184 11-33 (64)
110 >1fr3_A MOP, molybdate/tungsta 59.8 12 0.00037 17.8 7.0 47 3-49 7-58 (67)
111 >3h4j_B AMPK kdaid, SNF1-like 59.3 13 0.00038 17.7 4.0 40 159-200 10-50 (65)
112 >2crn_A Ubash3A protein; compa 58.1 6.4 0.00019 19.7 2.1 23 162-184 11-33 (64)
113 >3f2b_A DNA-directed DNA polym 58.0 6.4 0.00019 19.7 2.1 18 114-131 1-18 (69)
114 >2p6r_A Afuhel308 helicase; pr 55.1 11 0.00032 18.2 2.9 51 76-133 1-53 (68)
115 >1hh2_P NUSA, N utilization su 55.0 15 0.00044 17.2 8.9 64 4-67 9-72 (87)
116 >1gnl_A HCP, hybrid cluster pr 54.6 15 0.00045 17.2 6.1 36 168-203 161-197 (218)
117 >2dna_A Unnamed protein produc 54.4 15 0.00045 17.2 3.8 26 158-183 17-43 (67)
118 >3ci0_K Pseudopilin GSPK; gene 54.0 4.9 0.00015 20.5 1.0 25 65-89 16-40 (181)
119 >3bqs_A Uncharacterized protei 51.5 8.2 0.00024 19.0 1.8 17 108-124 4-20 (93)
120 >1szp_A DNA repair protein RAD 49.5 14 0.00043 17.4 2.8 32 99-130 3-34 (56)
121 >2juj_A E3 ubiquitin-protein l 48.1 16 0.00048 17.0 2.9 21 163-183 10-30 (56)
122 >2ooa_A E3 ubiquitin-protein l 48.0 16 0.00048 17.0 2.9 21 163-183 14-34 (52)
123 >1z96_A DNA-damage, UBA-domain 47.0 17 0.00051 16.9 2.9 22 163-184 7-28 (40)
124 >2oo9_A E3 ubiquitin-protein l 46.2 16 0.00047 17.1 2.6 21 163-183 7-27 (46)
125 >3go5_A Multidomain protein wi 45.2 21 0.00062 16.2 6.8 54 4-57 20-73 (84)
126 >2d9s_A CBL E3 ubiquitin prote 44.3 18 0.00052 16.8 2.6 21 163-183 12-32 (53)
127 >3bbn_M Ribosomal protein S13; 44.2 10 0.0003 18.4 1.4 26 68-93 57-82 (145)
128 >1toa_A Tromp-1, protein (peri 43.3 23 0.00067 16.1 4.3 45 94-138 39-83 (118)
129 >1bgx_T TAQ DNA polymerase; DN 42.0 2.6 7.8E-05 22.3 -1.9 12 161-172 59-70 (167)
130 >3gfk_B DNA-directed RNA polym 40.3 25 0.00074 15.8 3.1 28 103-130 43-70 (79)
131 >1wr1_B Ubiquitin-like protein 39.7 26 0.00075 15.7 3.6 27 158-184 15-42 (58)
132 >3fia_A Intersectin-1; EH 1 do 39.0 26 0.00077 15.6 4.1 39 160-198 51-89 (121)
133 >2j8s_A ACRB, acriflavine resi 36.2 24 0.0007 15.9 2.2 24 113-136 114-137 (208)
134 >3gi1_A LBP, laminin-binding p 35.6 19 0.00056 16.6 1.6 46 94-139 39-84 (109)
135 >3fe3_A MAP/microtubule affini 35.0 30 0.00089 15.2 2.7 22 162-183 118-139 (155)
136 >1nkw_E 50S ribosomal protein 33.4 21 0.00063 16.2 1.6 62 16-79 2-70 (103)
137 >2kgr_A Intersectin-1; structu 33.2 32 0.00095 15.0 4.6 43 159-201 32-74 (111)
138 >2v50_A Multidrug resistance p 31.5 34 0.001 14.8 2.5 27 92-118 14-40 (208)
139 >1qjt_A EH1, epidermal growth 30.6 35 0.001 14.7 4.7 41 161-201 31-71 (99)
140 >1zu4_A FTSY; GTPase, signal r 29.4 34 0.001 14.9 2.1 31 95-134 37-67 (117)
141 >1z3e_B DNA-directed RNA polym 29.1 37 0.0011 14.6 3.4 50 80-131 15-64 (73)
142 >1pq4_A Periplasmic binding pr 28.9 27 0.00081 15.5 1.6 42 95-136 38-79 (82)
143 >1h9m_A MODG, molybdenum-bindi 28.7 38 0.0011 14.5 7.0 47 3-49 17-69 (72)
144 >2o1e_A YCDH; alpha-beta prote 28.1 23 0.00067 16.1 1.0 42 94-135 38-79 (82)
145 >2awn_A Maltose/maltodextrin i 28.0 39 0.0012 14.5 3.5 54 3-58 4-63 (84)
146 >3go5_A Multidomain protein wi 27.2 40 0.0012 14.4 6.1 49 4-56 9-57 (64)
147 >2qpt_A EH domain-containing p 27.0 41 0.0012 14.3 4.6 41 159-199 43-83 (118)
148 >2pmy_A RAS and EF-hand domain 26.9 41 0.0012 14.3 4.1 29 160-188 46-74 (81)
149 >3hh8_A Metal ABC transporter 26.3 42 0.0012 14.2 2.3 45 94-138 41-85 (115)
150 >2qen_A Walker-type ATPase; un 26.2 42 0.0012 14.2 2.1 33 95-127 21-53 (202)
151 >1vej_A Riken cDNA 4931431F19; 26.2 42 0.0012 14.2 4.1 26 158-183 27-53 (74)
152 >3bq0_A POL IV, DBH, DNA polym 26.0 31 0.00091 15.2 1.4 11 114-124 1-11 (51)
153 >2kld_A Polycystin-2; PC2, PKD 25.9 43 0.0013 14.2 2.6 62 116-186 30-91 (123)
154 >1d8b_A SGS1 RECQ helicase; fi 25.1 44 0.0013 14.1 2.3 21 103-123 43-63 (81)
155 >3cx3_A Lipoprotein; zinc-bind 24.5 19 0.00056 16.6 0.1 44 94-137 38-81 (85)
156 >3i1n_R 50S ribosomal protein 24.1 30 0.0009 15.2 1.1 50 16-65 2-53 (103)
157 >1jr3_A DNA polymerase III sub 23.6 47 0.0014 13.9 2.3 34 95-128 25-61 (177)
158 >1gnt_A HCP, hybrid cluster pr 23.5 47 0.0014 13.9 4.6 36 168-203 166-201 (222)
159 >1iqp_A RFCS; clamp loader, ex 23.4 48 0.0014 13.9 2.1 37 94-130 33-71 (168)
160 >3fhg_A Mjogg, N-glycosylase/D 23.3 25 0.00074 15.8 0.5 11 111-121 47-57 (69)
161 >1eh2_A EPS15; calcium binding 23.1 48 0.0014 13.9 6.0 42 159-200 32-73 (106)
162 >3b9q_A Chloroplast SRP recept 22.3 50 0.0015 13.8 2.2 30 95-133 33-62 (102)
163 >1a5t_A Delta prime, HOLB; zin 21.8 51 0.0015 13.7 2.3 35 95-129 11-48 (166)
164 >1ci4_A Protein (barrier-TO-au 21.8 38 0.0011 14.5 1.2 19 108-126 18-36 (89)
165 >1ju2_A HydroxynitrIle lyase; 21.6 32 0.00096 15.0 0.8 31 74-119 7-37 (148)
166 >2chg_A Replication factor C s 20.9 53 0.0016 13.6 2.2 38 96-133 27-67 (160)
167 >2w1o_A 60S acidic ribosomal p 20.5 54 0.0016 13.5 1.8 44 159-207 20-65 (70)
168 >2z1c_A Hydrogenase expression 20.5 54 0.0016 13.5 4.9 47 4-53 4-50 (75)
169 >1kk8_A Myosin heavy chain, st 20.3 55 0.0016 13.5 5.4 29 157-185 247-278 (490)
No 1
>>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} (A:)
Probab=100.00 E-value=0 Score=362.38 Aligned_cols=191 Identities=25% Similarity=0.394 Sum_probs=176.5
Q ss_pred CCCEEEEEEEEEECCEEEEEECCEEEEEECCHHHHHHCCCCCCEEEEEEEEEECCCCEEEEEEECHHHHHHHHHHHHHHH
Q ss_conf 93258999999609979998588323897086889850247984999999997388418999706779999999850100
Q gi|254780553|r 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQG 80 (207)
Q Consensus 1 MI~~i~G~i~~~~~~~ivi~v~GvGY~i~vs~~~~~~l~~~g~~v~l~~~~~vrEd~~~LyGF~~~~Er~~F~~Li~V~G 80 (207)
||+|++|+|.++++++++++|+|+||+|++|.++...+ +.|+++.||||+++|||++.||||.++.||++|++|++|+|
T Consensus 1 MI~~l~G~v~~~~~~~~ii~~~gvGy~i~~~~~~~~~l-~~~~~~~l~~~~~vred~~~l~GF~~~~er~~F~~L~~V~G 79 (191)
T 1ixr_A 1 MIRYLRGLVLKKEAGGFVLLAGGVGFFLQAPTPFLQAL-EEGKEVGVHTHLLLKEEGLSLYGFPDEENLALFELLLSVSG 79 (191)
T ss_dssp CCCEEEEEEEEECSSEEEEECSSEEEEEECCHHHHHHC-CTTSEEEEEECCCCCSSCCCEEEESSHHHHHHHHHHHSSSC
T ss_pred CCCEEEEEEEEEECCEEEEEECCEEEEEECCHHHHHHC-CCCCEEEEEEEEEEEECCCEEECCCCHHHHHHHHHHHCCCC
T ss_conf 95669999999839979999899899999277999746-79986999999999607866771082899999999857588
Q ss_pred CCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 05101124431578999999985156687510457116799999999742221101133443233333445555653158
Q gi|254780553|r 81 VGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA 160 (207)
Q Consensus 81 IGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (207)
||||+|++|||++++++++++|.++|.+.|+++||||+|||+||++|||+|+.++.... ....++..
T Consensus 80 IGpk~Al~iL~~~~~~el~~aI~~~d~~~L~~ipGIG~KtA~rIi~eLk~k~~~~~~~~-------------~~~~~~~~ 146 (191)
T 1ixr_A 80 VGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERIALELKGKVPPHLLAG-------------EKVESEAA 146 (191)
T ss_dssp CCHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSTTCCHHHHHHHHHHHTTTSCSCC------------------------
T ss_pred CCHHHHHHHHHCCCHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCC-------------CCCCCCCH
T ss_conf 47788999985599999999998289998513888456889999999986425210011-------------23355568
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
Q ss_conf 9999999967999899999999998516888898999999999745
Q gi|254780553|r 161 INAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 (207)
Q Consensus 161 ~d~~~AL~~LGy~~~ea~~ai~~i~~~~~~~~~~eelIk~aLk~Ls 206 (207)
+|+++||.+|||++++|++++.++..+.++ .++|++||.|||+|.
T Consensus 147 ~e~~~aL~~LGy~~~ea~~ai~~~~~~~~~-~~~e~li~~aLk~l~ 191 (191)
T 1ixr_A 147 EEAVMALAALGFKEAQARAVVLDLLAQNPK-ARAQDLIKEALKRLR 191 (191)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHCC
T ss_conf 999999998699999999999999842999-999999999999639
No 2
>>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination, helicase; 1.90A {Escherichia coli} (A:66-144)
Probab=99.89 E-value=1.3e-23 Score=177.74 Aligned_cols=74 Identities=27% Similarity=0.506 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 77999999985010005101124431578999999985156687510457116799999999742221101133
Q gi|254780553|r 66 DLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVV 139 (207)
Q Consensus 66 ~~Er~~F~~Li~V~GIGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~K~~~~~~~~ 139 (207)
++||++|++|++|+|||||+||+|||+++|++|++||.++|.+.|+++||||+|||+||++|||||+.++....
T Consensus 1 ~~Er~~F~~L~~V~GIGpk~Al~iLs~~~~~el~~aI~~~D~~~L~~ipGIG~KtAerii~eLk~K~~~~~~~~ 74 (79)
T 1cuk_A 1 KQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGLHGDL 74 (79)
T ss_dssp HHHHHHHHHHHHSSSCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHHHHGGGCCSTT
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 89999999873478848999999975799999999999289999841999889999999999998887531101
No 3
>>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA binding, oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A (A:80-154)
Probab=99.89 E-value=1.4e-23 Score=177.37 Aligned_cols=73 Identities=32% Similarity=0.452 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 6779999999850100051011244315789999999851566875104571167999999997422211011
Q gi|254780553|r 65 SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137 (207)
Q Consensus 65 ~~~Er~~F~~Li~V~GIGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~K~~~~~~ 137 (207)
+++||++|++|++|+|||||+||+|||+++|++|++||.++|.+.|+++||||+|||+||++||+||+.++..
T Consensus 1 d~~Er~~F~~L~~V~GIGpk~Al~iLs~~~~~el~~aI~~~D~~~L~~ipGIG~KtA~rii~ELk~k~~~~~~ 73 (75)
T 2ztd_A 1 DGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELRDKVGVAAT 73 (75)
T ss_dssp SHHHHHHHHHHHTSTTCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHTTTCC----
T ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 8999999999854132236666232215776777788853688998508883568899999998411122233
No 4
>>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination, helicase; 1.90A {Escherichia coli} (A:1-65)
Probab=99.79 E-value=1.1e-18 Score=144.85 Aligned_cols=65 Identities=32% Similarity=0.507 Sum_probs=63.9
Q ss_pred CCCEEEEEEEEEECCEEEEEECCEEEEEECCHHHHHHCCCCCCEEEEEEEEEECCCCEEEEEEEC
Q ss_conf 93258999999609979998588323897086889850247984999999997388418999706
Q gi|254780553|r 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLS 65 (207)
Q Consensus 1 MI~~i~G~i~~~~~~~ivi~v~GvGY~i~vs~~~~~~l~~~g~~v~l~~~~~vrEd~~~LyGF~~ 65 (207)
||+||+|++.++++++++||||||||+|++|.+++.+|++.|++++||||++||||+++||||.|
T Consensus 1 Mi~~l~G~v~~~~~~~vvi~~~GvGYei~is~~~~~~l~~~g~~v~l~t~~~vrEd~~~LyGF~t 65 (65)
T 1cuk_A 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNN 65 (65)
T ss_dssp CCCEEEEEEEEEETTEEEEEETTEEEEEECCHHHHTTCCCTTSEEEEEEEEEEETTEEEEEEESS
T ss_pred CCCEEEEEEEEECCCEEEEEECCEEEEEEECHHHHHHCCCCCCCEEEEEEEEECCCCCEEECCCC
T ss_conf 95459999999629989999589889999558999863348981599999998046865756698
No 5
>>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA binding, oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A (A:1-79)
Probab=99.75 E-value=7.5e-18 Score=139.25 Aligned_cols=63 Identities=30% Similarity=0.519 Sum_probs=61.5
Q ss_pred CCCEEEEEEEEEECCEEEEEECCEEEEEECCHHHHHHCCCCCCEEEEEEEEEECCCCEEEEEEE
Q ss_conf 9325899999960997999858832389708688985024798499999999738841899970
Q gi|254780553|r 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64 (207)
Q Consensus 1 MI~~i~G~i~~~~~~~ivi~v~GvGY~i~vs~~~~~~l~~~g~~v~l~~~~~vrEd~~~LyGF~ 64 (207)
||+||+|++.+++++++|||||||||+|++|.++++.+ +.|++++||||++||||+++||||.
T Consensus 17 MI~~i~G~i~~~~~~~ivIev~GVGYeI~is~~~~~~l-~~g~ev~lyt~~~VRED~~~LYGFS 79 (79)
T 2ztd_A 17 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATL-RQGTEARLITAMIVREDSMTLYGFP 79 (79)
T ss_dssp SCCEEEEEEEEECSSEEEEEETTEEEEEECCHHHHTTC-CTTSEEEEEEEEEEETTEEEEEEES
T ss_pred CEEEEEEEEEEECCCEEEEEECCEEEEEEECHHHHHHC-CCCCEEEEEEEEEEECCHHEEEEEC
T ss_conf 31689999999719989999799889998378999975-8998489999999825701067527
No 6
>>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} (A:)
Probab=98.71 E-value=2.8e-08 Score=75.48 Aligned_cols=52 Identities=25% Similarity=0.346 Sum_probs=46.0
Q ss_pred CCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 55653158999999996799989999999999851688889899999999974
Q gi|254780553|r 153 ICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 (207)
Q Consensus 153 ~~~~~~~~~d~~~AL~~LGy~~~ea~~ai~~i~~~~~~~~~~eelIk~aLk~L 205 (207)
....++..+||++||++|||++.+|++++.++..+.++. ++|++||.|||.|
T Consensus 10 ~~~~~~~~~eAv~AL~~LGy~~~ea~kav~~i~~~~~~~-sveelIr~ALk~L 61 (62)
T 1ixs_A 10 EKVESEAAEEAVMALAALGFKEAQARAVVLDLLAQNPKA-RAQDLIKEALKRL 61 (62)
T ss_dssp ---CCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC-CHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHC
T ss_conf 866661078899999996421789999999998738542-3999999998754
No 7
>>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA binding, oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A (A:155-212)
Probab=98.69 E-value=4.6e-08 Score=73.97 Aligned_cols=51 Identities=29% Similarity=0.381 Sum_probs=45.4
Q ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
Q ss_conf 6531589999999967999899999999998516888898999999999745
Q gi|254780553|r 155 SMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 (207)
Q Consensus 155 ~~~~~~~d~~~AL~~LGy~~~ea~~ai~~i~~~~~~~~~~eelIk~aLk~Ls 206 (207)
..++..+|+++||++|||++.|+.+++..+..++++ .+++++||.|||+|+
T Consensus 5 ~~~~~~~da~~AL~aLGy~~~ea~~av~~v~~~~~~-~~~~elIr~ALk~L~ 55 (58)
T 2ztd_A 5 NGHAVRSPVVEALVGLGFAAKQAEEATDTVLAANHD-ATTSSALRSALSLLG 55 (58)
T ss_dssp ---CCHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH
T ss_conf 653216899999997599989999999999840899-999999999999974
No 8
>>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination, helicase; 1.90A {Escherichia coli} (A:145-203)
Probab=98.54 E-value=1.3e-07 Score=71.04 Aligned_cols=50 Identities=30% Similarity=0.370 Sum_probs=42.7
Q ss_pred CCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 55653158999999996799989999999999851688889899999999974
Q gi|254780553|r 153 ICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 (207)
Q Consensus 153 ~~~~~~~~~d~~~AL~~LGy~~~ea~~ai~~i~~~~~~~~~~eelIk~aLk~L 205 (207)
....++..+|+++||++|||++.|+.+++..+. .+..++|++||.|||.|
T Consensus 9 ~~~~~~~~~eAv~AL~aLGY~~~ea~kav~~i~---~~~~s~eelIk~ALk~L 58 (59)
T 1cuk_A 9 SPATDDAEQEAVARLVALGYKPQEASRMVSKIA---RPDASSETLIREALRAA 58 (59)
T ss_dssp ---CCHHHHHHHHHHHHHTCCHHHHHHHHHHSC---CSSCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH---CCCCCHHHHHHHHHHHC
T ss_conf 767773599999999986999999999999861---68999999999999970
No 9
>>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A* (A:304-377)
Probab=97.72 E-value=2.8e-05 Score=55.38 Aligned_cols=60 Identities=17% Similarity=0.263 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 999999850100051011244315789999999851566875104571167999999997422
Q gi|254780553|r 69 RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131 (207)
Q Consensus 69 r~~F~~Li~V~GIGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~K 131 (207)
+.+-+.|.+|.||||+.|-.+++.+.. ...|.+.+...|.++||||+++|+.|.--+++.
T Consensus 8 ~~~~~~L~~I~giG~~~a~~L~~~fgs---l~~i~~as~~~L~~v~GiG~~~A~~i~~~~~~~ 67 (74)
T 3c1y_A 8 ARGYRLLKTVARIPLSIGYNVVRMFKT---LDQISKASVEDLKKVEGIGEKRARAISESISSL 67 (74)
T ss_dssp CCSHHHHHHTSCCCHHHHHHHHHHHCS---HHHHTTCCHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHCCCCCCHHHHHHHHHHHCC---HHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 316888733999989999999998538---999985799888544784699999999999998
No 10
>>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} (A:)
Probab=97.52 E-value=0.00012 Score=51.13 Aligned_cols=57 Identities=21% Similarity=0.294 Sum_probs=48.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 999985010005101124431578999999985156687510457116799999999742
Q gi|254780553|r 71 WFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 (207)
Q Consensus 71 ~F~~Li~V~GIGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~ 130 (207)
+...|.+|.||||+.|-.++..++. .+.+.+.+...|.++||||++.|+.|.--+++
T Consensus 17 ~l~~L~~I~gIG~~~a~~L~~~F~s---~~~i~~A~~~~L~~v~GiG~~~A~~i~~~~~~ 73 (89)
T 1z00_A 17 VTECLTTVKSVNKTDSQTLLTTFGS---LEQLIAASREDLALCPGLGPQKARRLFDVLHE 73 (89)
T ss_dssp HHHHHTTSSSCCHHHHHHHHHHTCB---HHHHHHCCHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHCC---CHHHHHHHHHHHCHHCCCCHHHHHHHHHHHHC
T ss_conf 9998658997699999999999099---47876654751000033279999999999818
No 11
>>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerization motif; HET: DNA; 2.85A {Pyrococcus furiosus} (A:1-95)
Probab=97.41 E-value=6.1e-05 Score=53.18 Aligned_cols=62 Identities=18% Similarity=0.257 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHCC-C-CHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 779999999850100051011244315-7-89999999851566875104571167999999997422
Q gi|254780553|r 66 DLDRQWFMLLQSVQGVGARVAMGVLSR-I-TATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131 (207)
Q Consensus 66 ~~Er~~F~~Li~V~GIGpK~AL~iLs~-l-~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~K 131 (207)
+.....|..+.+|+|||++.|-.++.. + +++ .|.+.+...|.++||||+++|++|+-.+++.
T Consensus 28 ~~~~~~~~~ll~I~gIG~~~a~~L~~~~~~s~e----~i~~As~e~L~~i~Gig~~~A~~I~~~~~~~ 91 (95)
T 1pzn_A 28 KKKEKIIRSIEDLPGVGPATAEKLREAGYDTLE----AIAVASPIELKEVAGISEGTALKIIQAARKA 91 (95)
T ss_dssp -------CCSSCCTTCCHHHHHHHHTTTCCSHH----HHHTCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHCCHHHCCCCCHHHHHHHHHCCCCCHH----HHHHCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 110233214643799799999999985997199----9982899999975498999999999999873
No 12
>>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} (A:)
Probab=97.38 E-value=0.00011 Score=51.40 Aligned_cols=57 Identities=26% Similarity=0.423 Sum_probs=45.3
Q ss_pred HHHH-HHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 9999-98501000510112443157899999998515668751045711679999999974
Q gi|254780553|r 70 QWFM-LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 (207)
Q Consensus 70 ~~F~-~Li~V~GIGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk 129 (207)
+.|. .|.+|.||||+.|-.++..+.. +..|.+-+..-|.+++|||+++|++|.--|+
T Consensus 20 ~~~~~~L~~I~gIG~~~a~~L~~~Fgs---~~~i~~As~eeL~~v~gIG~~~A~~I~~~l~ 77 (78)
T 1kft_A 20 HMNTSSLETIEGVGPKRRQMLLKYMGG---LQGLRNASVEEIAKVPGISQGLAEKIFWSLK 77 (78)
T ss_dssp ---CCGGGGCTTCSSSHHHHHHHHHSC---HHHHHHCCHHHHTTSSSTTSHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCC---HHHHHHCCHHHHHHCCCCCHHHHHHHHHHHC
T ss_conf 203284656999479999999999099---8999857899997389989999999999976
No 13
>>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} (A:1-66)
Probab=96.83 E-value=0.00071 Score=46.06 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.2
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 68751045711679999999974
Q gi|254780553|r 107 SKVIAQIPGISMKIASRIMTELK 129 (207)
Q Consensus 107 ~~~L~~vpGIGkKtA~rIi~ELk 129 (207)
+..|+++||||+|||+|+.+.|=
T Consensus 11 I~~l~~LPGIG~KsA~Rla~~lL 33 (66)
T 1vdd_A 11 IRELSRLPGIGPKSAQRLAFHLF 33 (66)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHS
T ss_pred HHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 99996789988999999999997
No 14
>>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans} (A:1-118)
Probab=96.67 E-value=0.0011 Score=44.75 Aligned_cols=52 Identities=13% Similarity=0.104 Sum_probs=22.1
Q ss_pred HHHHHHHHCCCHHHHHHHCCC---CHHHHHH--HHHCCCHHHHHHCCCCCHHHHHHH
Q ss_conf 998501000510112443157---8999999--985156687510457116799999
Q gi|254780553|r 73 MLLQSVQGVGARVAMGVLSRI---TATELVE--SIILQNSKVIAQIPGISMKIASRI 124 (207)
Q Consensus 73 ~~Li~V~GIGpK~AL~iLs~l---~~~~l~~--aI~~~D~~~L~~vpGIGkKtA~rI 124 (207)
+.+.+++||||++|-.|-.-+ .+..+.. .=.-.....|.+|||||+|||+++
T Consensus 57 ~~l~~lpGIG~~~a~kI~E~l~tG~~~~le~l~~~~~~~l~~l~~i~GiGp~ta~~l 113 (118)
T 2w9m_A 57 REFTGIPKVGKGIAAELSDFARSGTFAPLEAAAGQLPPGLLDLLGVRGLGPKKIRSL 113 (118)
T ss_dssp --CCSSTTCCHHHHHHHHHHHHHSSCHHHHHHHHHSCHHHHHHTTSTTCCHHHHHHH
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHH
T ss_conf 886259998789999999999849828899987025178999857898789999999
No 15
>>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} (A:1-119)
Probab=96.30 E-value=0.0021 Score=42.93 Aligned_cols=51 Identities=16% Similarity=0.245 Sum_probs=20.5
Q ss_pred HHHHHHCCCHHHHHHH---CCCCHHHHHHHHHCCC---HHHHHHCCCCCHHHHHHHH
Q ss_conf 8501000510112443---1578999999985156---6875104571167999999
Q gi|254780553|r 75 LQSVQGVGARVAMGVL---SRITATELVESIILQN---SKVIAQIPGISMKIASRIM 125 (207)
Q Consensus 75 Li~V~GIGpK~AL~iL---s~l~~~~l~~aI~~~D---~~~L~~vpGIGkKtA~rIi 125 (207)
+.+++|||+++|=.|- .+-...++-..-.+.. ...|.+|+|||+|||.++.
T Consensus 59 ~~~lpgiG~~ia~~I~e~l~tG~~~~le~l~~~~~~~~~~~l~~i~GvGp~~a~~~~ 115 (119)
T 2fmp_A 59 AKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFV 115 (119)
T ss_dssp HHTSTTCCHHHHHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHTTSTTCCHHHHHHHH
T ss_pred HHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 847999648999999999964865899998733872578898853687889999999
No 16
>>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus} (A:1-129)
Probab=96.20 E-value=0.0016 Score=43.69 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=20.1
Q ss_pred HHHHHHCCCHHHHHHHC---CCCHHHHHHHHHCC---CHHHHHHCCCCCHHHHHHH
Q ss_conf 85010005101124431---57899999998515---6687510457116799999
Q gi|254780553|r 75 LQSVQGVGARVAMGVLS---RITATELVESIILQ---NSKVIAQIPGISMKIASRI 124 (207)
Q Consensus 75 Li~V~GIGpK~AL~iLs---~l~~~~l~~aI~~~---D~~~L~~vpGIGkKtA~rI 124 (207)
+.+++|||+++|=.|-. +-...++-..=.+. -...|++|||||+|||.++
T Consensus 63 ~~~lpgIG~~ia~~I~E~l~tG~~~~le~l~~~~~~~~l~~l~~i~GvG~~~a~~~ 118 (129)
T 2ihm_A 63 LHGLPYFGEHSTRVIQELLEHGTCEEVKQVRCSERYQTMKLFTQVFGVGVKTANRW 118 (129)
T ss_dssp GTTCTTCCHHHHHHHHHHHHHSCCHHHHHHHHSHHHHHHHHHHTSTTCCHHHHHHH
T ss_pred HHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 83599977899999999997098899998863203689999985557788999999
No 17
>>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B (A:)
Probab=95.93 E-value=0.0071 Score=39.41 Aligned_cols=56 Identities=20% Similarity=0.280 Sum_probs=45.8
Q ss_pred HHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 9985010005101124431578999999985156687510457116799999999742
Q gi|254780553|r 73 MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 (207)
Q Consensus 73 ~~Li~V~GIGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~ 130 (207)
..|..+.||||+.|-.+-+. ... =+..++.-+..-|..++|||.++|++|+..-+.
T Consensus 7 ~~L~~i~Gig~~~a~~L~~a-Gi~-TvedLa~a~~~eL~~i~Gi~~~~A~~ii~~Ar~ 62 (70)
T 1wcn_A 7 DDLLNLEGVDRDLAFKLAAR-GVC-TLEDLAEQGIDDLADIEGLTDEKAGALIMAARN 62 (70)
T ss_dssp HHHHSSTTCCHHHHHHHHTT-TCC-SHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHC-CCC-CHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 89981789899999999996-997-599998729999976517999999999999986
No 18
>>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A (A:157-220)
Probab=95.90 E-value=0.0062 Score=39.81 Aligned_cols=54 Identities=22% Similarity=0.378 Sum_probs=42.3
Q ss_pred HHHHH-HHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHH
Q ss_conf 99999-98501000510112443157899999998515668751045711679999999
Q gi|254780553|r 69 RQWFM-LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 (207)
Q Consensus 69 r~~F~-~Li~V~GIGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ 126 (207)
++.|. .|.++.||||+.|..++..+.. ++.|.+-+...|.+|+|||+ +|+.|.-
T Consensus 7 ~~~~~~~L~~I~gIG~~~a~~L~~~F~s---~~~i~~As~eeL~~v~gig~-~A~~I~~ 61 (64)
T 2nrt_A 7 KESLRSVLDNVPGIGPIRKKKLIEHFGS---LENIRSASLEEIARVIGSTE-IARRVLD 61 (64)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHHHHHHCS---HHHHHTSCHHHHHHHHTCHH-HHHHHHH
T ss_pred HHHHCCHHHCCCCCCHHHHHHHHHHCCC---HHHHHCCCHHHHHHCCCCHH-HHHHHHH
T ss_conf 3420152220531079999999998689---99997099999986879299-9999999
No 19
>>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} (A:1-154)
Probab=95.84 E-value=0.0044 Score=40.79 Aligned_cols=88 Identities=17% Similarity=0.131 Sum_probs=42.5
Q ss_pred CHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHH-HHHHCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 101124431578999999985156687510457116799999999742-2211011334432333334455556531589
Q gi|254780553|r 83 ARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG-KAISLSSVVQQDMSCVNKEQAHICSMPSFAI 161 (207)
Q Consensus 83 pK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~-K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (207)
-+.|...|..++.. -.+...+.++||||+++|++|.--|.. ++..+.... .+...
T Consensus 62 Yr~Aa~~l~~~p~~-------I~s~~~l~~lpgIG~~ia~~I~E~l~tG~l~~le~l~-----------------~~~~~ 117 (154)
T 1jms_A 62 FMRASSVLKSLPFP-------ITSMKDTEGIPCLGDKVKSIIEGIIEDGESSEAKAVL-----------------NDERY 117 (154)
T ss_dssp HHHHHHHHHTCSSC-------CCSGGGGTTCSSCCHHHHHHHHHHHHHSSCHHHHHHH-----------------HCHHH
T ss_pred HHHHHHHHHHCCCC-------CCCHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHH-----------------HCCCC
T ss_conf 99999999859977-------7999998379996499999999999969889899987-----------------26653
Q ss_pred HHHHHHHH-CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 99999996-7999899999999998516888898999999
Q gi|254780553|r 162 NAISALVN-LGYGQDQATTAVVSVLKKEKNIADDSQIIRL 200 (207)
Q Consensus 162 d~~~AL~~-LGy~~~ea~~ai~~i~~~~~~~~~~eelIk~ 200 (207)
.++.-|.. .|-.++-|++... ....+.+++.+.
T Consensus 118 ~~~~~l~~i~GiGp~~a~~~~~------~Gi~sl~dL~~a 151 (154)
T 1jms_A 118 KSFKLFTSVFGVGLKTAEKWFR------MGFRTLSKIQSD 151 (154)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHH------TTCCSHHHHHHC
T ss_pred HHHHHHHHCCCCCHHHHHHHHH------CCCCCHHHHHHH
T ss_conf 0788888567879999999998------598889999874
No 20
>>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} (A:)
Probab=95.24 E-value=0.018 Score=36.78 Aligned_cols=53 Identities=13% Similarity=0.268 Sum_probs=38.7
Q ss_pred HHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 985010005101124431578999999985156687510457116799999999742
Q gi|254780553|r 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 (207)
Q Consensus 74 ~Li~V~GIGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~ 130 (207)
.|.++.||||+.|-.+++.+.. .+.|.+-+..-|.++|| |+++|+.|.--|+.
T Consensus 5 ~L~~IpgVG~~~a~~Ll~~f~S---i~~i~~As~eeL~~i~g-g~~~A~~i~~~l~~ 57 (63)
T 2a1j_A 5 FLLKMPGVNAKNCRSLMHHVKN---IAELAALSQDELTSILG-NAANAKQLYDFIHT 57 (63)
T ss_dssp HHHTSTTCCHHHHHHHHHHCSS---HHHHHTCCHHHHHHHHS-CHHHHHHHHHHHHC
T ss_pred HHHCCCCCCHHHHHHHHHHHCC---HHHHHHCCHHHHHHCCC-CHHHHHHHHHHHCC
T ss_conf 8851999899999999998078---99998699999977859-68999999999822
No 21
>>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} (B:1-71)
Probab=95.01 E-value=0.014 Score=37.40 Aligned_cols=51 Identities=14% Similarity=0.229 Sum_probs=38.4
Q ss_pred HHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHH
Q ss_conf 9998501000510112443157899999998515668751045711679999999
Q gi|254780553|r 72 FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 (207)
Q Consensus 72 F~~Li~V~GIGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ 126 (207)
-..|..+.|||||.+-.+|+.+.. ++.|.+-+...|..+||+ +|+|++|.-
T Consensus 17 ~~~L~~ipGIg~k~~~~Ll~~f~s---i~~i~~As~eeL~~v~G~-~~~A~~i~~ 67 (71)
T 1z00_B 17 QDFLLKMPGVNAKNCRSLMHHVKN---IAELAALSQDELTSILGN-AANAKQLYD 67 (71)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHSSC---HHHHHHSCHHHHHHHHSC-HHHHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHHHCCC---HHHHHHCCHHHHHHCCCC-HHHHHHHHH
T ss_conf 999980899889999999999079---999987899999887597-899999999
No 22
>>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanococcus jannaschii} (A:210-274)
Probab=94.94 E-value=0.021 Score=36.26 Aligned_cols=37 Identities=16% Similarity=0.271 Sum_probs=28.9
Q ss_pred CHHHHHH-HHHCCCHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 8999999-985156687510457116799999999742
Q gi|254780553|r 94 TATELVE-SIILQNSKVIAQIPGISMKIASRIMTELKG 130 (207)
Q Consensus 94 ~~~~l~~-aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~ 130 (207)
+|++|+. ++..||..-+..|||||+|||-+++-+.++
T Consensus 1 tp~q~id~~~L~G~d~nipGV~GIGpKtA~~li~~~~~ 38 (65)
T 1a76_A 1 SLDDLIDIAIFMGTDYNPGGVKGIGFKRAYELVRSGVA 38 (65)
T ss_dssp CHHHHHHHHHHHCCTTSTTTTTTCCHHHHHHHHHHTCH
T ss_pred CHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHCCC
T ss_conf 89999999985697556555685629999999997299
No 23
>>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus} (A:)
Probab=94.79 E-value=0.0058 Score=39.97 Aligned_cols=53 Identities=19% Similarity=0.325 Sum_probs=24.7
Q ss_pred HHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 999850100051011244315789999999851566875104571167999999997
Q gi|254780553|r 72 FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 (207)
Q Consensus 72 F~~Li~V~GIGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~EL 128 (207)
+..+.++.||||++|-.++..+..= ++|.+-....| ..-|||+++|++|.--|
T Consensus 172 ~~~~~~I~~IG~~~a~~Ll~~Fgsl---~~i~~As~eeL-~~vgiG~~~A~~I~~~f 224 (226)
T 3c65_A 172 HSVLDDIPGVGEKRKKALLNYFGSV---KKMKEATVEEL-QRANIPRAVAEKIYEKL 224 (226)
T ss_dssp ---------------------------------------------------------
T ss_pred CCHHHHHHHHCHHHHHHHHHHCCCH---HHHHHCCHHHH-HHCCCCHHHHHHHHHHH
T ss_conf 1768899874799999999985899---99983999999-87799999999999996
No 24
>>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} (A:1-128)
Probab=94.59 E-value=0.006 Score=39.86 Aligned_cols=72 Identities=21% Similarity=0.275 Sum_probs=40.1
Q ss_pred CCHHHHHHCCCCCHHHHHHHHHHHHHH-HHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-CCCCHHHHHHHHH
Q ss_conf 566875104571167999999997422-21101133443233333445555653158999999996-7999899999999
Q gi|254780553|r 105 QNSKVIAQIPGISMKIASRIMTELKGK-AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN-LGYGQDQATTAVV 182 (207)
Q Consensus 105 ~D~~~L~~vpGIGkKtA~rIi~ELk~K-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~AL~~-LGy~~~ea~~ai~ 182 (207)
.+...+.++||||+|+|++|--=|... +..+... .....++..|.+ -|-.+.-|++...
T Consensus 54 ~s~~~~~~lpgIG~~ia~~I~E~l~tG~~~~le~l-------------------~~~~~~~~~~~~i~GiG~~~a~~~~~ 114 (128)
T 2bcq_A 54 TSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI-------------------SESVPVLELFSNIWGAGTKTAQMWYQ 114 (128)
T ss_dssp CCHHHHHTSTTCCHHHHHHHHHHHHSSSCGGGGGC-------------------CTTHHHHHHHHTSTTCCHHHHHHHHH
T ss_pred CCHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHH-------------------CCCCCHHHCCCCCCCCCHHHHHHHHH
T ss_conf 89999827999648999999999973978888743-------------------03366133144567778899999986
Q ss_pred HHHHHCCCCCCHHHHHHHH
Q ss_conf 9985168888989999999
Q gi|254780553|r 183 SVLKKEKNIADDSQIIRLA 201 (207)
Q Consensus 183 ~i~~~~~~~~~~eelIk~a 201 (207)
....+.+++.+.|
T Consensus 115 ------~g~~tl~dL~~~a 127 (128)
T 2bcq_A 115 ------QGFRSLEDIRSQA 127 (128)
T ss_dssp ------TTCCSHHHHHHHC
T ss_pred ------CCCCCHHHHHHHH
T ss_conf ------2826799987542
No 25
>>1ngn_A Methyl-CPG binding protein MBD4; mismacth repair in methylated DNA, DNA binding protein; 2.10A {Mus musculus} (A:1-129)
Probab=94.37 E-value=0.027 Score=35.49 Aligned_cols=45 Identities=9% Similarity=0.056 Sum_probs=30.7
Q ss_pred HHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHH
Q ss_conf 501000510112443157899999998515668751045711679999999
Q gi|254780553|r 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 (207)
Q Consensus 76 i~V~GIGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ 126 (207)
+.--|...+.|-.|. ++.+.+..+..+.|+++||||+|||+=+.+
T Consensus 78 i~~~G~~~~Ka~~i~------~~a~~~~~e~~~~L~~l~GIG~~tA~~vll 122 (129)
T 1ngn_A 78 LKPLGLYDLRAKTII------KFSDEYLTKQWRYPIELHGIGKYGNDSYRI 122 (129)
T ss_dssp TGGGSCHHHHHHHHH------HHHHHHHHSCCSSGGGSTTCCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHH------HHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 812447999999999------998246663476656279966899999999
No 26
>>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: DNA; NMR {Homo sapiens} (A:)
Probab=94.21 E-value=0.015 Score=37.20 Aligned_cols=58 Identities=21% Similarity=0.179 Sum_probs=46.7
Q ss_pred HHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 998501000510112443157899999998515668751045711679999999974222
Q gi|254780553|r 73 MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132 (207)
Q Consensus 73 ~~Li~V~GIGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~K~ 132 (207)
..|..+.||||++|=.+-+ .... =+..++.-+...|.+++|+|.++|++|+-..++-.
T Consensus 25 ~~l~~i~GVG~~~~~~L~~-~Gi~-Tv~~la~~~~~~L~~i~G~~~~~a~~i~~~ar~~~ 82 (114)
T 1b22_A 25 ISRLEQCGINANDVKKLEE-AGFH-TVEAVAYAPKKELINIKGISEAKADKILAEAAKLV 82 (114)
T ss_dssp HHHHHHTTCSHHHHHHHHT-TCCS-SGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHHHHS
T ss_pred HHHHHHCCCCHHHHHHHHH-CCCC-HHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf 8999768999899999999-6985-39999858999998620636999999999999866
No 27
>>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase/DNA complex; 2.00A {Archaeoglobus fulgidus} (A:221-288)
Probab=93.17 E-value=0.064 Score=33.05 Aligned_cols=36 Identities=17% Similarity=0.269 Sum_probs=22.6
Q ss_pred HHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 999999985156687510457116799999999742
Q gi|254780553|r 95 ATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 (207)
Q Consensus 95 ~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~ 130 (207)
|++|+..-.---...+..|||||+|||-+++-+..+
T Consensus 2 ~~q~~d~~~L~GsD~~pGV~GIG~ktA~~li~~~~s 37 (68)
T 1rxw_A 2 REQLIDIAILVGTDYNEGVKGVGVKKALNYIKTYGD 37 (68)
T ss_dssp HHHHHHHHHHHCBTTBCCCTTCCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 999989998339743589999578999999999499
No 28
>>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} (A:182-261)
Probab=93.08 E-value=0.09 Score=32.04 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=27.0
Q ss_pred CCHHHHHHH-HHCCC-HHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 789999999-85156-687510457116799999999742
Q gi|254780553|r 93 ITATELVES-IILQN-SKVIAQIPGISMKIASRIMTELKG 130 (207)
Q Consensus 93 l~~~~l~~a-I~~~D-~~~L~~vpGIGkKtA~rIi~ELk~ 130 (207)
++|++++.. +..|| ..-+-.|||||+|||.+++-+..+
T Consensus 5 v~p~q~~d~~~L~GD~sD~ipGV~GIG~ktA~~Li~~~gs 44 (80)
T 1exn_A 5 DDVEQFISLKAIXGDLGDNIRGVEGIGAKRGYNIIREFGN 44 (80)
T ss_dssp SSHHHHHHHHHHHCBGGGTBCCCTTCCHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 9899999999971983136899997679999999999599
No 29
>>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication; 2.00A {Pyrococcus furiosus} (A:212-288)
Probab=92.98 E-value=0.064 Score=33.04 Aligned_cols=38 Identities=29% Similarity=0.394 Sum_probs=31.2
Q ss_pred CCHHHHHH-HHHCCCHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 78999999-985156687510457116799999999742
Q gi|254780553|r 93 ITATELVE-SIILQNSKVIAQIPGISMKIASRIMTELKG 130 (207)
Q Consensus 93 l~~~~l~~-aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~ 130 (207)
++|++++. ++..||.--+..|||||+|||-+++-+..+
T Consensus 10 ~~~~q~id~~~L~G~d~ni~GV~GiG~ktA~kli~~~gs 48 (77)
T 1b43_A 10 LTREKLIELAILVGTDYNPGGIKGIGLKKALEIVRHSKD 48 (77)
T ss_dssp CCHHHHHHHHHHHCCTTSTTCSTTCCHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 789999999997286656565896249999999999599
No 30
>>3bz1_U Photosystem II 12 kDa extrinsic protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 2axt_U* 3bz2_U* 3a0b_U* 3a0h_U* (U:)
Probab=92.87 E-value=0.042 Score=34.25 Aligned_cols=48 Identities=13% Similarity=0.227 Sum_probs=33.9
Q ss_pred HHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 998501000510112443157899999998515668751045711679999999974
Q gi|254780553|r 73 MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 (207)
Q Consensus 73 ~~Li~V~GIGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk 129 (207)
..|..+.||||+.|-+|+..-+. ....-|.+++|||.++-++|---++
T Consensus 33 ~~L~~ipGig~~~A~~Iv~~gpf---------~s~~dL~~v~gi~~~~~~~i~~~l~ 80 (104)
T 3bz1_U 33 AAFIQYRGLYPTLAKLIVKNAPY---------ESVEDVLNIPGLTERQKQILRENLE 80 (104)
T ss_dssp GGGGGSTTTTHHHHHHHHHSCCC---------SSGGGGGGCTTCCHHHHHHHHHHGG
T ss_pred HHHHHCCCCCHHHHHHHHHCCCC---------CCHHHHHCCCCCCHHHHHHHHHHHC
T ss_conf 99977758699999999970897---------8799996179989999999998761
No 31
>>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A (A:111-127,A:196-236)
Probab=92.78 E-value=0.073 Score=32.64 Aligned_cols=35 Identities=11% Similarity=0.104 Sum_probs=24.5
Q ss_pred CCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHH
Q ss_conf 57899999998515668751045711679999999
Q gi|254780553|r 92 RITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 (207)
Q Consensus 92 ~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ 126 (207)
.++.+.+...=..+=.+.|+++||||+|||+=+.+
T Consensus 17 ~Ldl~~L~~l~~eea~~~L~~i~GIGpwTAdciLL 51 (58)
T 3i0w_A 17 NLNLEYIKSLNDNECHEELKKFMGVGPQVADCIML 51 (58)
T ss_dssp TSCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHH
T ss_pred HCCHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 57989973135446789998268812999999999
No 32
>>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} (A:)
Probab=92.44 E-value=0.29 Score=28.66 Aligned_cols=60 Identities=17% Similarity=0.297 Sum_probs=36.1
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Q ss_conf 6875104571167999999997422211011334432333334455556531589999999967-999899999999998
Q gi|254780553|r 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL-GYGQDQATTAVVSVL 185 (207)
Q Consensus 107 ~~~L~~vpGIGkKtA~rIi~ELk~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~AL~~L-Gy~~~ea~~ai~~i~ 185 (207)
-..|.+|||||+|+|.+|+-.+.-.- +...+.. .-..+|..+ |-.++-|++.+....
T Consensus 71 F~~L~~V~GIGpk~Al~iL~~~~~~e--l~~aI~~--------------------~d~~~L~~ipGIG~KtA~rIi~eLk 128 (191)
T 1ixr_A 71 FELLLSVSGVGPKVALALLSALPPRL--LARALLE--------------------GDARLLTSASGVGRRLAERIALELK 128 (191)
T ss_dssp HHHHHSSSCCCHHHHHHHHHHSCHHH--HHHHHHT--------------------TCHHHHTTSTTCCHHHHHHHHHHHT
T ss_pred HHHHHCCCCCCHHHHHHHHHCCCHHH--HHHHHHC--------------------CCHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 99985758847788999985599999--9999982--------------------8999851388845688999999998
Q ss_pred HHC
Q ss_conf 516
Q gi|254780553|r 186 KKE 188 (207)
Q Consensus 186 ~~~ 188 (207)
.+.
T Consensus 129 ~k~ 131 (191)
T 1ixr_A 129 GKV 131 (191)
T ss_dssp TTS
T ss_pred HHC
T ss_conf 642
No 33
>>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase/DNA complex; 2.00A {Archaeoglobus fulgidus} (A:221-288)
Probab=92.28 E-value=0.052 Score=33.66 Aligned_cols=30 Identities=17% Similarity=0.337 Sum_probs=24.9
Q ss_pred HHHHCCCHHHHHHHCCC-CHHHHHHHHHCCC
Q ss_conf 01000510112443157-8999999985156
Q gi|254780553|r 77 SVQGVGARVAMGVLSRI-TATELVESIILQN 106 (207)
Q Consensus 77 ~V~GIGpK~AL~iLs~l-~~~~l~~aI~~~D 106 (207)
+|.|||||+|+.+++.+ +.+.+.+.+..-.
T Consensus 19 GV~GIG~ktA~~li~~~~sle~i~~~~~~~~ 49 (68)
T 1rxw_A 19 GVKGVGVKKALNYIKTYGDIFRALKALKVNI 49 (68)
T ss_dssp CCTTCCHHHHHHHHHHHSSHHHHHHHHTC--
T ss_pred CCCCCCHHHHHHHHHHHCCHHHHHHHHHHCH
T ss_conf 9999578999999999499999999876142
No 34
>>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} (A:499-568)
Probab=92.04 E-value=0.22 Score=29.45 Aligned_cols=25 Identities=20% Similarity=0.429 Sum_probs=14.1
Q ss_pred CCCHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 1566875104571167999999997
Q gi|254780553|r 104 LQNSKVIAQIPGISMKIASRIMTEL 128 (207)
Q Consensus 104 ~~D~~~L~~vpGIGkKtA~rIi~EL 128 (207)
.-+...|.++||||++.|++|+-..
T Consensus 6 ~A~~~~L~~lpgig~~~A~~Ii~~R 30 (70)
T 3bzc_A 6 TASAALLARISGLNSTLAQNIVAHR 30 (70)
T ss_dssp TCCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 7548888660697889999999999
No 35
>>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=92.04 E-value=0.33 Score=28.31 Aligned_cols=33 Identities=12% Similarity=0.102 Sum_probs=24.7
Q ss_pred HHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 999999851566875104571167999999997
Q gi|254780553|r 96 TELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 (207)
Q Consensus 96 ~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~EL 128 (207)
....--|.+.+...|.++||||++.|++|+-.=
T Consensus 28 ~~~~idiNtAs~~eL~~lpgig~~~A~~Ii~~R 60 (98)
T 2edu_A 28 QKILDLLNEGSARDLRSLQRIGPKKAQLIVGWR 60 (98)
T ss_dssp HHHHHHHHHSCHHHHHHSTTCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 422441357999999757898999999999999
No 36
>>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus} (U:48-134)
Probab=92.00 E-value=0.09 Score=32.04 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=11.7
Q ss_pred CCHHHHHHCCCCCHHHHHHHHH
Q ss_conf 5668751045711679999999
Q gi|254780553|r 105 QNSKVIAQIPGISMKIASRIMT 126 (207)
Q Consensus 105 ~D~~~L~~vpGIGkKtA~rIi~ 126 (207)
-+...|.++||||+++|+||+-
T Consensus 13 A~~~~L~~ipGig~~~A~~Iv~ 34 (87)
T 1s5l_U 13 TNIAAFIQYRGLYPTLAKLIVK 34 (87)
T ss_dssp SCGGGGGGSTTCTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
T ss_conf 7899997710346999999998
No 37
>>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-binding, excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus} (A:219-300)
Probab=91.86 E-value=0.065 Score=32.99 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=29.0
Q ss_pred CHHHHHH-HHHCCCHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 8999999-985156687510457116799999999742
Q gi|254780553|r 94 TATELVE-SIILQNSKVIAQIPGISMKIASRIMTELKG 130 (207)
Q Consensus 94 ~~~~l~~-aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~ 130 (207)
+|++|+. ++..||..-+..|||||+|||-+++-+..+
T Consensus 1 Tp~q~~d~~~L~G~d~ni~GV~GiG~ktA~~li~~~g~ 38 (82)
T 2izo_A 1 TREQLIDIGILIGTDYNPDGIRGIGPERALKIIKKYGK 38 (82)
T ss_dssp CHHHHHHHHHHHCCSSSTTCSTTCCHHHHHHHHHHSSC
T ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 99999999986288654334799448899999998399
No 38
>>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A (A:230-311)
Probab=91.83 E-value=0.13 Score=31.09 Aligned_cols=59 Identities=17% Similarity=0.223 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHCCC-CHHHHHHHHHCCC-----HHHHHHCCC------CCHHHHHHHHHHH
Q ss_conf 999998501000510112443157-8999999985156-----687510457------1167999999997
Q gi|254780553|r 70 QWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQN-----SKVIAQIPG------ISMKIASRIMTEL 128 (207)
Q Consensus 70 ~~F~~Li~V~GIGpK~AL~iLs~l-~~~~l~~aI~~~D-----~~~L~~vpG------IGkKtA~rIi~EL 128 (207)
-|.++|+.|+||++-.|.+|...+ +|..|.+|-.+.+ ...|..++. ||+...+||..=+
T Consensus 5 ~~~~~L~qi~gvs~~~A~aI~~~yPTp~~L~~ay~~~~~~~e~~~lL~~l~~~~~~r~iG~~lS~~Iy~~f 75 (82)
T 2ziu_A 5 VFARQLMQISGVSGDKAAAVLEHYSTVSSLLQAYDKCSSETEKEKLLSSVKYGKLKRNLGPALSRTIYQLY 75 (82)
T ss_dssp HHHHHHTTBTTCCHHHHHHHHHHCSSHHHHHHHHHHCSSHHHHTTTTTTCEETTTTEECHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99999980899999999999997699999999998578677899998645356566765899999999997
No 39
>>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus HB8} (A:)
Probab=91.81 E-value=0.11 Score=31.59 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=14.3
Q ss_pred HHCCCHHHHHHCCCCCHHHHHHHHH
Q ss_conf 8515668751045711679999999
Q gi|254780553|r 102 IILQNSKVIAQIPGISMKIASRIMT 126 (207)
Q Consensus 102 I~~~D~~~L~~vpGIGkKtA~rIi~ 126 (207)
|.+-+...|.++||||++.|++|+-
T Consensus 21 iNtA~~~~L~~lpGig~~~A~~Ii~ 45 (75)
T 2duy_A 21 LNEASLEELXALPGIGPVLARRIVE 45 (75)
T ss_dssp TTTCCHHHHTTSTTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHCCCCCHHHHHHHHH
T ss_conf 6128799997778989999999998
No 40
>>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanococcus jannaschii} (A:210-274)
Probab=91.73 E-value=0.052 Score=33.62 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=23.6
Q ss_pred HHHHHCCCHHHHHHHCCCCH-HHHHHHHHCCC
Q ss_conf 50100051011244315789-99999985156
Q gi|254780553|r 76 QSVQGVGARVAMGVLSRITA-TELVESIILQN 106 (207)
Q Consensus 76 i~V~GIGpK~AL~iLs~l~~-~~l~~aI~~~D 106 (207)
-+|.|||||+|..+++.+.- +.+.+.+..=+
T Consensus 19 pGV~GIGpKtA~~li~~~~~le~i~~~l~~~~ 50 (65)
T 1a76_A 19 GGVKGIGFKRAYELVRSGVAKDVLKKEVEYYD 50 (65)
T ss_dssp TTTTTCCHHHHHHHHHHTCHHHHHHHHSTTHH
T ss_pred CCCCCEEHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 55685629999999997299999999765268
No 41
>>1m3q_A 8-oxoguanine DNA glycosylase; DNA repair, END product, HOGG, 8-aminoguanine, RE-ligation, hydrolase/DNA complex; HET: DRZ ANG; 1.90A {Homo sapiens} (A:123-255)
Probab=91.53 E-value=0.24 Score=29.21 Aligned_cols=20 Identities=30% Similarity=0.554 Sum_probs=14.4
Q ss_pred HHHHHHCCCCCHHHHHHHHH
Q ss_conf 68751045711679999999
Q gi|254780553|r 107 SKVIAQIPGISMKIASRIMT 126 (207)
Q Consensus 107 ~~~L~~vpGIGkKtA~rIi~ 126 (207)
.+.|+++||||+|||+=+.+
T Consensus 107 ~~~L~~lpGIG~~tA~~ill 126 (133)
T 1m3q_A 107 HKALCILPGVGTKVADCICL 126 (133)
T ss_dssp HHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHH
T ss_conf 99998468837999999999
No 42
>>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A* (A:34-143)
Probab=91.25 E-value=0.11 Score=31.55 Aligned_cols=23 Identities=4% Similarity=0.261 Sum_probs=13.3
Q ss_pred CCCHHHHHHCCCCCHHHHHHHHH
Q ss_conf 15668751045711679999999
Q gi|254780553|r 104 LQNSKVIAQIPGISMKIASRIMT 126 (207)
Q Consensus 104 ~~D~~~L~~vpGIGkKtA~rIi~ 126 (207)
..+.+.|+++||||+|||+=+.+
T Consensus 81 ~~~~~~L~~lpGIG~~tA~~vll 103 (110)
T 3fsp_A 81 PDDPDEFSRLKGVGPYTVGAVLS 103 (110)
T ss_dssp CCSHHHHHTSTTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 98899995111268999999999
No 43
>>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, hydrolase; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* (A:1-149)
Probab=91.15 E-value=0.077 Score=32.49 Aligned_cols=60 Identities=13% Similarity=0.162 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 799999998501000510112443157899999998515668751045711679999999974
Q gi|254780553|r 67 LDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 (207)
Q Consensus 67 ~Er~~F~~Li~V~GIGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk 129 (207)
..|+++.- ++=-||+|+.|..|...+..+ ...+..+|.=.|+.++|||-|+|.+|...+.
T Consensus 6 ~~~~~~~~-L~~~Gi~~~~a~ki~~~yg~~--a~~~i~~nPY~L~~i~gigF~~aD~iA~~~g 65 (149)
T 3e1s_A 6 LERRLLAG-LQGLGLTINQAQRAVKHFGAD--ALDRLEKDLFTLTEVEGIGFLTADKLWQARG 65 (149)
T ss_dssp -----------------------------------------CGGGTSSSCCHHHHHTTC----
T ss_pred HHHHHHHH-HHHCCCCHHHHHHHHHHHHHH--HHHHHHHCCCEEEECCCCCHHHHHHHHHHCC
T ss_conf 99999999-987799999999999998499--9999994993554158999599999999769
No 44
>>3bz1_U Photosystem II 12 kDa extrinsic protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 2axt_U* 3bz2_U* 3a0b_U* 3a0h_U* (U:)
Probab=91.01 E-value=0.13 Score=30.94 Aligned_cols=25 Identities=20% Similarity=0.188 Sum_probs=21.7
Q ss_pred HHCCCHHHHHHCCCCCHHHHHHHHH
Q ss_conf 8515668751045711679999999
Q gi|254780553|r 102 IILQNSKVIAQIPGISMKIASRIMT 126 (207)
Q Consensus 102 I~~~D~~~L~~vpGIGkKtA~rIi~ 126 (207)
|.+-+...|.++||||++.|++|+-
T Consensus 27 IN~As~~~L~~ipGig~~~A~~Iv~ 51 (104)
T 3bz1_U 27 LNNTNIAAFIQYRGLYPTLAKLIVK 51 (104)
T ss_dssp TTSSCGGGGGGSTTTTHHHHHHHHH
T ss_pred CCCCCHHHHHHCCCCCHHHHHHHHH
T ss_conf 7228999997775869999999997
No 45
>>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication; 2.00A {Pyrococcus furiosus} (A:212-288)
Probab=90.92 E-value=0.036 Score=34.67 Aligned_cols=40 Identities=8% Similarity=0.258 Sum_probs=28.0
Q ss_pred HHHHHCCCHHHHHHHCCC-CHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHH
Q ss_conf 501000510112443157-899999998515668751045711679999999
Q gi|254780553|r 76 QSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRIMT 126 (207)
Q Consensus 76 i~V~GIGpK~AL~iLs~l-~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ 126 (207)
-+|+|||||+|+.++..+ +.+. .+..+.-++++.++++..
T Consensus 29 ~GV~GiG~ktA~kli~~~gsle~-----------i~~~~~~~~~~~~~~~~~ 69 (77)
T 1b43_A 29 GGIKGIGLKKALEIVRHSKDPLA-----------KFQKQSDVDLYAIKEFFL 69 (77)
T ss_dssp TCSTTCCHHHHHHHHHTCSSGGG-----------GTGGGCSSCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHCCHHH-----------HHCCCCCCCHHHHHHHHC
T ss_conf 65896249999999999599999-----------752210016899999843
No 46
>>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans} (A:1-118)
Probab=90.88 E-value=0.12 Score=31.09 Aligned_cols=41 Identities=17% Similarity=0.179 Sum_probs=28.5
Q ss_pred HHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 0112443157899999998515668751045711679999999974
Q gi|254780553|r 84 RVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 (207)
Q Consensus 84 K~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk 129 (207)
+.|.+.+..++. .|.+...+.+.++||||+++|++|.-=+.
T Consensus 38 r~Aa~~i~~l~~-----~i~~~~~~~l~~lpGIG~~~a~kI~E~l~ 78 (118)
T 2w9m_A 38 RSAARSLEELNE-----ETPELLAREFTGIPKVGKGIAAELSDFAR 78 (118)
T ss_dssp HHHHHHHHSCC---------------CCSSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCC-----HHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 999999996882-----36675498862599987899999999998
No 47
>>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus HB8} (A:)
Probab=90.88 E-value=0.14 Score=30.68 Aligned_cols=45 Identities=16% Similarity=0.261 Sum_probs=37.0
Q ss_pred HHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHH
Q ss_conf 999850100051011244315789999999851566875104571167999999
Q gi|254780553|r 72 FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 (207)
Q Consensus 72 F~~Li~V~GIGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi 125 (207)
.+.|..+.||||+.|=+|+..=+. .+..-|.+++|||+++-++|-
T Consensus 26 ~~~L~~lpGig~~~A~~Ii~~R~f---------~s~~dL~~v~gl~~~~~~~l~ 70 (75)
T 2duy_A 26 LEELXALPGIGPVLARRIVEGRPY---------ARVEDLLKVKGIGPATLERLR 70 (75)
T ss_dssp HHHHTTSTTCCHHHHHHHHHTCCC---------SSGGGGGGSTTCCHHHHHHHG
T ss_pred HHHHHHCCCCCHHHHHHHHHCCCC---------CCHHHHHHCCCCCHHHHHHHH
T ss_conf 999977789899999999986898---------989999618898999999998
No 48
>>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} (A:182-261)
Probab=90.70 E-value=0.071 Score=32.74 Aligned_cols=38 Identities=13% Similarity=0.349 Sum_probs=27.0
Q ss_pred HHHHHHHHHHH--------HHHCCCHHHHHHHCCC-CHHHHHHHHHC
Q ss_conf 79999999850--------1000510112443157-89999999851
Q gi|254780553|r 67 LDRQWFMLLQS--------VQGVGARVAMGVLSRI-TATELVESIIL 104 (207)
Q Consensus 67 ~Er~~F~~Li~--------V~GIGpK~AL~iLs~l-~~~~l~~aI~~ 104 (207)
+.---|..|.+ |.|||||+|+.++..+ +.+.+..++..
T Consensus 8 ~q~~d~~~L~GD~sD~ipGV~GIG~ktA~~Li~~~gsle~i~~~~~~ 54 (80)
T 1exn_A 8 EQFISLKAIXGDLGDNIRGVEGIGAKRGYNIIREFGNVLDIIDQLPL 54 (80)
T ss_dssp HHHHHHHHHHCBGGGTBCCCTTCCHHHHHHHHHHHCSHHHHHHHCSC
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 99999999719831368999976799999999995999999997865
No 49
>>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 2.00A {Methanocaldococcus jannaschii} (A:38-150)
Probab=90.65 E-value=0.38 Score=27.90 Aligned_cols=20 Identities=30% Similarity=0.424 Sum_probs=16.0
Q ss_pred HHHHHHCCCCCHHHHHHHHH
Q ss_conf 68751045711679999999
Q gi|254780553|r 107 SKVIAQIPGISMKIASRIMT 126 (207)
Q Consensus 107 ~~~L~~vpGIGkKtA~rIi~ 126 (207)
...|+++||||+|||+=+..
T Consensus 87 ~~~L~~l~GIG~~tA~~~l~ 106 (113)
T 3fhf_A 87 EFLVRNIKGIGYKEASHFLR 106 (113)
T ss_dssp HHHHHHSTTCCHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHH
T ss_conf 99998785832999999999
No 50
>>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} (X:1-14,X:218-292)
Probab=90.04 E-value=0.19 Score=29.95 Aligned_cols=39 Identities=26% Similarity=0.283 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 578999999985156687510457116799999999742
Q gi|254780553|r 92 RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 (207)
Q Consensus 92 ~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~ 130 (207)
..++++|+..-.---...+..|||||+|||-+++-+..+
T Consensus 13 ~~tp~q~id~~~L~GsDy~pGV~GIG~KtA~kLI~~ygs 51 (89)
T 1ul1_X 13 APNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKS 51 (89)
T ss_dssp CTCHHHHHHHHHHHHCSSSCCCTTCCHHHHHHHHHHSSS
T ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 859899999999639965355788569999999998099
No 51
>>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-binding, excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus} (A:219-300)
Probab=89.79 E-value=0.063 Score=33.06 Aligned_cols=30 Identities=13% Similarity=0.349 Sum_probs=23.6
Q ss_pred HHHHHCCCHHHHHHHCCC-CHHHHHHHHHCC
Q ss_conf 501000510112443157-899999998515
Q gi|254780553|r 76 QSVQGVGARVAMGVLSRI-TATELVESIILQ 105 (207)
Q Consensus 76 i~V~GIGpK~AL~iLs~l-~~~~l~~aI~~~ 105 (207)
-+|.|||||+|+.++..+ +.+.+.+++..-
T Consensus 19 ~GV~GiG~ktA~~li~~~g~le~i~~~~~~~ 49 (82)
T 2izo_A 19 DGIRGIGPERALKIIKKYGKIEKAMEYGEIS 49 (82)
T ss_dssp TCSTTCCHHHHHHHHHHSSCC----------
T ss_pred CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 3479944889999999839999999999985
No 52
>>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} (A:149-197)
Probab=89.67 E-value=0.2 Score=29.69 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=15.2
Q ss_pred HHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 8751045711679999999974
Q gi|254780553|r 108 KVIAQIPGISMKIASRIMTELK 129 (207)
Q Consensus 108 ~~L~~vpGIGkKtA~rIi~ELk 129 (207)
+.|..+||||+|++++++-...
T Consensus 14 s~L~~IpGIG~k~~~~LL~~Fg 35 (49)
T 2bgw_A 14 YILQSFPGIGRRTAERILERFG 35 (49)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHS
T ss_pred HHHHCCCCCCHHHHHHHHHHCC
T ss_conf 8885356899789999999869
No 53
>>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A* (A:304-377)
Probab=89.63 E-value=0.68 Score=26.17 Aligned_cols=26 Identities=12% Similarity=0.336 Sum_probs=21.3
Q ss_pred CCHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 56687510457116799999999742
Q gi|254780553|r 105 QNSKVIAQIPGISMKIASRIMTELKG 130 (207)
Q Consensus 105 ~D~~~L~~vpGIGkKtA~rIi~ELk~ 130 (207)
.-...|+.+||||+++|++|+-..+.
T Consensus 9 ~~~~~L~~I~giG~~~a~~L~~~fgs 34 (74)
T 3c1y_A 9 RGYRLLKTVARIPLSIGYNVVRMFKT 34 (74)
T ss_dssp CSHHHHHHTSCCCHHHHHHHHHHHCS
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHCC
T ss_conf 16888733999989999999998538
No 54
>>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} (A:28-137)
Probab=89.41 E-value=0.26 Score=28.92 Aligned_cols=20 Identities=20% Similarity=0.526 Sum_probs=9.3
Q ss_pred CCHHHHHHCCCCCHHHHHHH
Q ss_conf 56687510457116799999
Q gi|254780553|r 105 QNSKVIAQIPGISMKIASRI 124 (207)
Q Consensus 105 ~D~~~L~~vpGIGkKtA~rI 124 (207)
.+.+.|+++||||+|||+=+
T Consensus 83 ~~~~~L~~l~GIG~~ta~~~ 102 (110)
T 1orn_A 83 RDRDELMKLPGVGRKTANVV 102 (110)
T ss_dssp SCHHHHTTSTTCCHHHHHHH
T ss_pred CCHHHHHHCCCCCHHHHHHH
T ss_conf 88999975879752589999
No 55
>>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} (A:499-568)
Probab=89.28 E-value=0.23 Score=29.30 Aligned_cols=49 Identities=10% Similarity=0.243 Sum_probs=37.6
Q ss_pred HHHHHHHHHCCCHHHHHHHCCCCHHHHHHHH-HCCCHHHHHHCCCCCHHHHHHHHH
Q ss_conf 9998501000510112443157899999998-515668751045711679999999
Q gi|254780553|r 72 FMLLQSVQGVGARVAMGVLSRITATELVESI-ILQNSKVIAQIPGISMKIASRIMT 126 (207)
Q Consensus 72 F~~Li~V~GIGpK~AL~iLs~l~~~~l~~aI-~~~D~~~L~~vpGIGkKtA~rIi~ 126 (207)
...|..+.||||+.|-+|+.. .+.- .-.+..-|.++||+|+++.+++.-
T Consensus 9 ~~~L~~lpgig~~~A~~Ii~~------R~~~G~f~s~~dL~~v~gl~~~~~~~l~~ 58 (70)
T 3bzc_A 9 AALLARISGLNSTLAQNIVAH------RDANGAFRTRDELKKVSRLGEKTFEQAAG 58 (70)
T ss_dssp HHHHHTSTTCCHHHHHHHHHH------HHHHCCCSSGGGGGGSTTCCHHHHHHHGG
T ss_pred HHHHHHCCCCCHHHHHHHHHH------HHHCCCCCCHHHHHHCCCCCHHHHHHCCE
T ss_conf 888866069788999999999------99669957799998567888128987180
No 56
>>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation, base twisting, hydrolase; 2.00A {Methanothermobacterthermautotrophicus} (A:29-139)
Probab=89.06 E-value=0.29 Score=28.67 Aligned_cols=20 Identities=25% Similarity=0.544 Sum_probs=9.3
Q ss_pred CCHHHHHHCCCCCHHHHHHH
Q ss_conf 56687510457116799999
Q gi|254780553|r 105 QNSKVIAQIPGISMKIASRI 124 (207)
Q Consensus 105 ~D~~~L~~vpGIGkKtA~rI 124 (207)
+....|+++||||+|||+=+
T Consensus 84 ~~~~~L~~l~GIG~~tA~~~ 103 (111)
T 1kea_A 84 RNRKAILDLPGVGKYTCAAV 103 (111)
T ss_dssp SCHHHHHTSTTCCHHHHHHH
T ss_pred CHHHHHHCCCCCCHHHHHHH
T ss_conf 30467650898761689999
No 57
>>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, structural genomics, PSI-2, protein structure initiative; 2.55A {Bacillus halodurans} (A:1-49,A:127-233)
Probab=89.02 E-value=0.12 Score=31.26 Aligned_cols=32 Identities=19% Similarity=0.073 Sum_probs=24.6
Q ss_pred HHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 99999851566875104571167999999997
Q gi|254780553|r 97 ELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 (207)
Q Consensus 97 ~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~EL 128 (207)
++...-..++.+.|.++||||+|||+-++.--
T Consensus 50 el~~g~~pe~~~~LlsLPGIGpkTA~~ILlfa 81 (156)
T 2h56_A 50 ELEGAEATTVIEKLTAIKGIGQWTAEXFXXFS 81 (156)
T ss_dssp HHTTSCHHHHHHHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC
T ss_conf 26665355788888873897878999999851
No 58
>>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} (B:1-71)
Probab=89.00 E-value=0.24 Score=29.18 Aligned_cols=23 Identities=22% Similarity=0.534 Sum_probs=19.7
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 87510457116799999999742
Q gi|254780553|r 108 KVIAQIPGISMKIASRIMTELKG 130 (207)
Q Consensus 108 ~~L~~vpGIGkKtA~rIi~ELk~ 130 (207)
..|.++||||+|+|.+++-..+.
T Consensus 18 ~~L~~ipGIg~k~~~~Ll~~f~s 40 (71)
T 1z00_B 18 DFLLKMPGVNAKNCRSLMHHVKN 40 (71)
T ss_dssp HHHHTCSSCCHHHHHHHHHHSSC
T ss_pred HHHHCCCCCCHHHHHHHHHHCCC
T ss_conf 99980899889999999999079
No 59
>>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus} (U:48-134)
Probab=88.80 E-value=0.18 Score=30.12 Aligned_cols=48 Identities=13% Similarity=0.227 Sum_probs=38.2
Q ss_pred HHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 998501000510112443157899999998515668751045711679999999974
Q gi|254780553|r 73 MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 (207)
Q Consensus 73 ~~Li~V~GIGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk 129 (207)
..|..+.||||+.|=.|+..=+. .+..-|.+++|||+++-++|---++
T Consensus 16 ~~L~~ipGig~~~A~~Iv~~g~f---------~s~~dL~~v~gi~~~~~~~i~~~l~ 63 (87)
T 1s5l_U 16 AAFIQYRGLYPTLAKLIVKNAPY---------ESVEDVLNIPGLTERQKQILRENLE 63 (87)
T ss_dssp GGGGGSTTCTHHHHHHHHHTCCC---------SSGGGGGGCTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHCCCC---------CCHHHHHCCCCCCHHHHHHHHHHHC
T ss_conf 99977103469999999982784---------8799996177579999999998653
No 60
>>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} (A:23-145)
Probab=88.77 E-value=0.44 Score=27.43 Aligned_cols=25 Identities=16% Similarity=0.112 Sum_probs=15.2
Q ss_pred HHCCCHHHHHHCCCCCHHHHHHHHH
Q ss_conf 8515668751045711679999999
Q gi|254780553|r 102 IILQNSKVIAQIPGISMKIASRIMT 126 (207)
Q Consensus 102 I~~~D~~~L~~vpGIGkKtA~rIi~ 126 (207)
-..+....|.++||||+|||+=+.+
T Consensus 93 ~~~~~~~~L~~l~GIG~~tA~~ill 117 (123)
T 1pu6_A 93 KQEVTREWLLDQKGIGKESADAILC 117 (123)
T ss_dssp HHHCCHHHHHTSTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 9467999998489966999999999
No 61
>>2ziu_B Crossover junction endonuclease EME1; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Homo sapiens} PDB: 2ziw_B 2zix_B 2ziv_B (B:242-341)
Probab=88.68 E-value=0.45 Score=27.37 Aligned_cols=60 Identities=20% Similarity=0.303 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHCCC-CHHHHHHHHHCCC-----HHHHHHCC------------CCCHHHHHHHHHHHH
Q ss_conf 999998501000510112443157-8999999985156-----68751045------------711679999999974
Q gi|254780553|r 70 QWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQN-----SKVIAQIP------------GISMKIASRIMTELK 129 (207)
Q Consensus 70 ~~F~~Li~V~GIGpK~AL~iLs~l-~~~~l~~aI~~~D-----~~~L~~vp------------GIGkKtA~rIi~ELk 129 (207)
-|-++|+.|+||.+-.|.+|.+.+ +|..|.+|-...+ ...|..++ -||+..++||--=+.
T Consensus 11 ~~~~~L~qI~gvs~~kA~aI~~~YPTp~~L~~ay~~~~~~~e~~~lL~~i~~~~~~~~~~~~r~iG~~lS~~Iy~~f~ 88 (100)
T 2ziu_B 11 VWRRQIQQLNRVSLEMASAVVNAYPSPQLLVQAYQQCFSDKERQNLLADIQVRRGEGVTSTSRRIGPELSRRIYLQMT 88 (100)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHSCSHHHHHHHHHTCSCHHHHTTTTTTCBTTTTC----CCCBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHEECCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 999999865799999999999978999999999984567245678776510022578764556146999999999983
No 62
>>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} (A:23-133)
Probab=88.56 E-value=0.31 Score=28.42 Aligned_cols=53 Identities=13% Similarity=0.256 Sum_probs=26.3
Q ss_pred HHHHHHHHHCCCHHHHHHHCCCCHHHHH---HHHHCCCHHHHHHCCCCCHHHHHHHHH
Q ss_conf 9998501000510112443157899999---998515668751045711679999999
Q gi|254780553|r 72 FMLLQSVQGVGARVAMGVLSRITATELV---ESIILQNSKVIAQIPGISMKIASRIMT 126 (207)
Q Consensus 72 F~~Li~V~GIGpK~AL~iLs~l~~~~l~---~aI~~~D~~~L~~vpGIGkKtA~rIi~ 126 (207)
+..++.--|.....|-.|.+. .+.+. ..-...+...|.++||||+|||.=+..
T Consensus 50 ~~~~l~~~g~~~~ka~~i~~~--a~~~~~~~~~~~~~~~~~L~~l~GIG~~tA~~vll 105 (111)
T 2abk_A 50 VKTYIKTIGLYNSKAENIIKT--CRILLEQHNGEVPEDRAALEALPGVGRKTANVVLN 105 (111)
T ss_dssp HHHHHTTSTTHHHHHHHHHHH--HHHHHHHTTTSCCSCHHHHHHSTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 777767411567788899999--99999860411367799999898606359999999
No 63
>>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} (A:)
Probab=88.54 E-value=0.25 Score=29.07 Aligned_cols=24 Identities=21% Similarity=0.515 Sum_probs=20.2
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 687510457116799999999742
Q gi|254780553|r 107 SKVIAQIPGISMKIASRIMTELKG 130 (207)
Q Consensus 107 ~~~L~~vpGIGkKtA~rIi~ELk~ 130 (207)
.+.|..+||||+|+|++++-..+.
T Consensus 3 ~s~L~~IpgVG~~~a~~Ll~~f~S 26 (63)
T 2a1j_A 3 QDFLLKMPGVNAKNCRSLMHHVKN 26 (63)
T ss_dssp CHHHHTSTTCCHHHHHHHHHHCSS
T ss_pred HHHHHCCCCCCHHHHHHHHHHHCC
T ss_conf 888851999899999999998078
No 64
>>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=88.50 E-value=0.32 Score=28.41 Aligned_cols=51 Identities=18% Similarity=0.177 Sum_probs=39.1
Q ss_pred HHHHHHHHHCCCHHHHHHHCCCCHHHHHHHH-HCCCHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 9998501000510112443157899999998-51566875104571167999999997
Q gi|254780553|r 72 FMLLQSVQGVGARVAMGVLSRITATELVESI-ILQNSKVIAQIPGISMKIASRIMTEL 128 (207)
Q Consensus 72 F~~Li~V~GIGpK~AL~iLs~l~~~~l~~aI-~~~D~~~L~~vpGIGkKtA~rIi~EL 128 (207)
...|..+.||||+.|=+|+.. .+.- .-.++.-|.+++|||+++.+++.--+
T Consensus 39 ~~eL~~lpgig~~~A~~Ii~~------R~~~G~f~siedL~~v~gi~~~~~~~l~~~~ 90 (98)
T 2edu_A 39 ARDLRSLQRIGPKKAQLIVGW------RELHGPFSQVEDLERVEGITGKQMESFLKAN 90 (98)
T ss_dssp HHHHHHSTTCCHHHHHHHHHH------HHHHCCCSSGGGGGGSTTCCHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHH------HHHCCCCCCHHHHHCCCCCCHHHHHHHHHHC
T ss_conf 999975789899999999999------9985895889998258898999999999828
No 65
>>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, hydrolase; 1.80A {Escherichia coli} (A:105-231)
Probab=88.42 E-value=0.29 Score=28.66 Aligned_cols=70 Identities=14% Similarity=0.073 Sum_probs=34.9
Q ss_pred HHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCH
Q ss_conf 99999998515668751045711679999999974222110113344323333344555565315899999999679998
Q gi|254780553|r 95 ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 (207)
Q Consensus 95 ~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~AL~~LGy~~ 174 (207)
.+.++.+|..++.+ -+.|.++.-.|..++........... .........+...+.+..+||..
T Consensus 10 fe~lv~~Il~Qq~~---------~~~a~~~~~~l~~~~g~~~~~~~~~~--------~~p~~~~~~~~~~~~~~~~g~~~ 72 (127)
T 1mpg_A 10 FEQGVRAILGQLVS---------VAMAAKLTARVAQLYGERLDDFPEYI--------CFPTPQRLAAADPQALKALGMPL 72 (127)
T ss_dssp HHHHHHHHHTTTSC---------HHHHHHHHHHHHHHHCCBCSSCTTCB--------CCCCHHHHHTCCHHHHHHTTSCH
T ss_pred HHHHHHHHHHCHHH---------HHHHHHHHHHHHHHHCCCCCCCCCCC--------CCCCHHHHHCCCHHHHHHCCCCH
T ss_conf 99999999967232---------99999999999998588767687656--------79989999769999997528866
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780553|r 175 DQATTAV 181 (207)
Q Consensus 175 ~ea~~ai 181 (207)
..+....
T Consensus 73 ~ka~~i~ 79 (127)
T 1mpg_A 73 KRAEALI 79 (127)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 5899999
No 66
>>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} (A:1-23,A:110-225)
Probab=87.62 E-value=0.32 Score=28.36 Aligned_cols=31 Identities=19% Similarity=0.287 Sum_probs=22.1
Q ss_pred HHHHCCCHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 9985156687510457116799999999742
Q gi|254780553|r 100 ESIILQNSKVIAQIPGISMKIASRIMTELKG 130 (207)
Q Consensus 100 ~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~ 130 (207)
.---....-.|.++||||+|||.-|++--=+
T Consensus 15 ~~~~~~~~~eL~~LpGIG~ktAd~Illfa~~ 45 (139)
T 1kg2_A 15 DKYGRKTLPEVAALPGVGRSTAGAILSLSLG 45 (139)
T ss_dssp HHHCCCCSGHHHTSTTCCHHHHHHHHHHHHC
T ss_pred HHCCCCCCCHHHCCCCCCHHHHHHHHHHHCC
T ss_conf 9819987999862898727899999998449
No 67
>>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} (X:1-14,X:218-292)
Probab=86.47 E-value=0.4 Score=27.74 Aligned_cols=46 Identities=17% Similarity=0.302 Sum_probs=27.5
Q ss_pred HHHHCCCHHHHHHHCCC-CHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHH
Q ss_conf 01000510112443157-89999999851566875104571167999999
Q gi|254780553|r 77 SVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRIM 125 (207)
Q Consensus 77 ~V~GIGpK~AL~iLs~l-~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi 125 (207)
+|.|||||+|+.++..+ +.+.+.+++. ......-+..-.+-|+.+.
T Consensus 33 GV~GIG~KtA~kLI~~ygsle~ii~~l~---~~~~~~~~~~~~~~~~~~f 79 (89)
T 1ul1_X 33 SIRGIGPKRAVDLIQKHKSIEEIVRRLD---PNKYPVPENWLHKEAHQLF 79 (89)
T ss_dssp CCTTCCHHHHHHHHHHSSSHHHHHTTCC---CTTSCCCSSCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHCCCHHHHHHHHH---HHCCCCCCCCCHHHHHHHH
T ss_conf 5788569999999998099999999998---6077554123699999984
No 68
>>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} (A:)
Probab=85.88 E-value=0.51 Score=27.00 Aligned_cols=53 Identities=11% Similarity=0.185 Sum_probs=34.5
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC-CCCHHHHHHHHHHH
Q ss_conf 6875104571167999999997422211011334432333334455556531589999999967-99989999999999
Q gi|254780553|r 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL-GYGQDQATTAVVSV 184 (207)
Q Consensus 107 ~~~L~~vpGIGkKtA~rIi~ELk~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~AL~~L-Gy~~~ea~~ai~~i 184 (207)
...|+.+||||+++|++++-...+- ..+.. --.+-|... |..+.-|+......
T Consensus 18 l~~L~~I~gIG~~~a~~L~~~F~s~-~~i~~------------------------A~~~~L~~v~GiG~~~A~~i~~~~ 71 (89)
T 1z00_A 18 TECLTTVKSVNKTDSQTLLTTFGSL-EQLIA------------------------ASREDLALCPGLGPQKARRLFDVL 71 (89)
T ss_dssp HHHHTTSSSCCHHHHHHHHHHTCBH-HHHHH------------------------CCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHCCCCCCCHHHHHHHHHHHCCC-HHHHH------------------------HHHHHHCHHCCCCHHHHHHHHHHH
T ss_conf 9986589976999999999990994-78766------------------------547510000332799999999998
No 69
>>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} (A:1-49)
Probab=85.84 E-value=0.48 Score=27.17 Aligned_cols=21 Identities=19% Similarity=0.550 Sum_probs=11.0
Q ss_pred HHHHHCCCCCHHHHHHHHHHH
Q ss_conf 875104571167999999997
Q gi|254780553|r 108 KVIAQIPGISMKIASRIMTEL 128 (207)
Q Consensus 108 ~~L~~vpGIGkKtA~rIi~EL 128 (207)
..|..+||||+++|+++.-..
T Consensus 14 ~~L~~I~gVG~~~ak~Ll~~F 34 (49)
T 1x2i_A 14 LIVEGLPHVSATLARRLLKHF 34 (49)
T ss_dssp HHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHC
T ss_conf 998589997899999999970
No 70
>>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A (A:157-220)
Probab=85.60 E-value=0.58 Score=26.64 Aligned_cols=24 Identities=17% Similarity=0.426 Sum_probs=20.0
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 687510457116799999999742
Q gi|254780553|r 107 SKVIAQIPGISMKIASRIMTELKG 130 (207)
Q Consensus 107 ~~~L~~vpGIGkKtA~rIi~ELk~ 130 (207)
...|..+||||+++|++++-..++
T Consensus 11 ~~~L~~I~gIG~~~a~~L~~~F~s 34 (64)
T 2nrt_A 11 RSVLDNVPGIGPIRKKKLIEHFGS 34 (64)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHCS
T ss_pred CCHHHCCCCCCHHHHHHHHHHCCC
T ss_conf 152220531079999999998689
No 71
>>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} (A:271-340)
Probab=84.92 E-value=0.46 Score=27.30 Aligned_cols=28 Identities=14% Similarity=0.186 Sum_probs=18.9
Q ss_pred CHHHHHHHHHCCCHHHHHHCCCCCHHHHHHH
Q ss_conf 8999999985156687510457116799999
Q gi|254780553|r 94 TATELVESIILQNSKVIAQIPGISMKIASRI 124 (207)
Q Consensus 94 ~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rI 124 (207)
+|+++.+-+.+=+ ++.+||||+||++|+
T Consensus 1 d~~~~~~~l~~lp---i~~i~GIG~~~~~~L 28 (70)
T 1t94_A 1 NRQAVMDFIKDLP---IRKVSGIGKVTEKML 28 (70)
T ss_dssp SHHHHHHHHTTCB---GGGCTTSCHHHHHHH
T ss_pred CHHHHHHHHHHCC---CCCCCCCCCCCHHHH
T ss_conf 2789999997397---140257631100454
No 72
>>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A (A:111-127,A:196-236)
Probab=84.47 E-value=0.46 Score=27.32 Aligned_cols=26 Identities=31% Similarity=0.332 Sum_probs=21.6
Q ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 67799999998501000510112443
Q gi|254780553|r 65 SDLDRQWFMLLQSVQGVGARVAMGVL 90 (207)
Q Consensus 65 ~~~Er~~F~~Li~V~GIGpK~AL~iL 90 (207)
+....+.-+.|+++.|||||+|=-+|
T Consensus 25 ~l~~eea~~~L~~i~GIGpwTAdciL 50 (58)
T 3i0w_A 25 SLNDNECHEELKKFMGVGPQVADCIM 50 (58)
T ss_dssp HSCHHHHHHHHTTSTTCCHHHHHHHH
T ss_pred HCCCHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 13544678999826881299999999
No 73
>>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus} (A:)
Probab=84.31 E-value=0.63 Score=26.41 Aligned_cols=24 Identities=8% Similarity=0.135 Sum_probs=19.4
Q ss_pred CCHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 566875104571167999999997
Q gi|254780553|r 105 QNSKVIAQIPGISMKIASRIMTEL 128 (207)
Q Consensus 105 ~D~~~L~~vpGIGkKtA~rIi~EL 128 (207)
.+.+-+..+||||+|+|.+|-=-|
T Consensus 55 ~s~~~l~~lpgiG~~ia~kI~e~l 78 (87)
T 2kp7_A 55 RSGKEAKILQHFGDRLCRMLDEKL 78 (87)
T ss_dssp CSHHHHHTCTTTCHHHHHHHHHHH
T ss_pred CCHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 889998738998789999999999
No 74
>>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} (A:)
Probab=83.89 E-value=1.8 Score=23.44 Aligned_cols=30 Identities=17% Similarity=0.400 Sum_probs=24.3
Q ss_pred CCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 565315899999999679998999999999
Q gi|254780553|r 154 CSMPSFAINAISALVNLGYGQDQATTAVVS 183 (207)
Q Consensus 154 ~~~~~~~~d~~~AL~~LGy~~~ea~~ai~~ 183 (207)
........+++..|+.+||++..+++|+..
T Consensus 23 ~~~~~~~~~~i~~L~~MGF~~~~a~~AL~~ 52 (73)
T 1wiv_A 23 HQTSDIDQSSVDTLLSFGFAEDVARKALKA 52 (73)
T ss_dssp CSSCSSCHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 788998999999999469999999999999
No 75
>>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* (A:240-306)
Probab=83.83 E-value=0.55 Score=26.78 Aligned_cols=17 Identities=24% Similarity=0.591 Sum_probs=14.2
Q ss_pred HHHCCCCCHHHHHHHHH
Q ss_conf 51045711679999999
Q gi|254780553|r 110 IAQIPGISMKIASRIMT 126 (207)
Q Consensus 110 L~~vpGIGkKtA~rIi~ 126 (207)
+.++||||+||++|+--
T Consensus 4 i~~i~GVG~~t~~kL~~ 20 (67)
T 2aq4_A 4 LDDLPGVGHSTLSRLES 20 (67)
T ss_dssp GGGSTTCCHHHHHHHHH
T ss_pred CCCHHCCCHHHHHHHHH
T ss_conf 23012027899999998
No 76
>>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA binding, oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A (A:80-154)
Probab=83.61 E-value=0.69 Score=26.15 Aligned_cols=59 Identities=19% Similarity=0.321 Sum_probs=34.7
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-CCCCHHHHHHHHHHHHH
Q ss_conf 87510457116799999999742221101133443233333445555653158999999996-79998999999999985
Q gi|254780553|r 108 KVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN-LGYGQDQATTAVVSVLK 186 (207)
Q Consensus 108 ~~L~~vpGIGkKtA~rIi~ELk~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~AL~~-LGy~~~ea~~ai~~i~~ 186 (207)
..|.+|+|||+|+|-+|+..+.-. .+...+.. +=..+|.. =|-.++-|++.+-+...
T Consensus 9 ~~L~~V~GIGpk~Al~iLs~~~~~--el~~aI~~--------------------~D~~~L~~ipGIG~KtA~rii~ELk~ 66 (75)
T 2ztd_A 9 LTLLSVSGVGPRLAMAALAVHDAP--ALRQVLAD--------------------GNVAALTRVPGIGKRGAERMVLELRD 66 (75)
T ss_dssp HHHHTSTTCCHHHHHHHHHHSCHH--HHHHHHHT--------------------TCHHHHHTSTTCCHHHHHHHHHHHTT
T ss_pred HHHHCCCCCCHHHHHHHHCCCCHH--HHHHHHHC--------------------CCHHHHHCCCCCCHHHHHHHHHHHHC
T ss_conf 998541322366662322157767--77788853--------------------68899850888356889999999841
Q ss_pred HC
Q ss_conf 16
Q gi|254780553|r 187 KE 188 (207)
Q Consensus 187 ~~ 188 (207)
..
T Consensus 67 k~ 68 (75)
T 2ztd_A 67 KV 68 (75)
T ss_dssp TC
T ss_pred CC
T ss_conf 11
No 77
>>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} (A:)
Probab=83.61 E-value=0.47 Score=27.26 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=19.7
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 687510457116799999999742
Q gi|254780553|r 107 SKVIAQIPGISMKIASRIMTELKG 130 (207)
Q Consensus 107 ~~~L~~vpGIGkKtA~rIi~ELk~ 130 (207)
...|+.+||||+++|++|+-...+
T Consensus 23 ~~~L~~I~gIG~~~a~~L~~~Fgs 46 (78)
T 1kft_A 23 TSSLETIEGVGPKRRQMLLKYMGG 46 (78)
T ss_dssp CCGGGGCTTCSSSHHHHHHHHHSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 284656999479999999999099
No 78
>>2zkq_m 40S ribosomal protein S18E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1h_M (m:1-88)
Probab=83.26 E-value=0.86 Score=25.50 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=19.5
Q ss_pred HHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 8751045711679999999974
Q gi|254780553|r 108 KVIAQIPGISMKIASRIMTELK 129 (207)
Q Consensus 108 ~~L~~vpGIGkKtA~rIi~ELk 129 (207)
-+|+++.|||+++|.+|+-.|.
T Consensus 28 ~ALt~I~GIG~~~A~~Ic~~lg 49 (88)
T 2zkq_m 28 FAITAIKGVGRRYAHVVLRKAD 49 (88)
T ss_dssp HHGGGSTTCCHHHHHHHHHHHT
T ss_pred EEHHCCCCCCHHHHHHHHHHCC
T ss_conf 6030246628999999999829
No 79
>>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B* (X:105-171)
Probab=83.20 E-value=1.6 Score=23.70 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=24.8
Q ss_pred CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 5653158999999996799989999999999
Q gi|254780553|r 154 CSMPSFAINAISALVNLGYGQDQATTAVVSV 184 (207)
Q Consensus 154 ~~~~~~~~d~~~AL~~LGy~~~ea~~ai~~i 184 (207)
........++++-|+++||++..+++|+..-
T Consensus 20 ~~~~~~~~~~i~~L~~MGF~~~~a~~AL~~~ 50 (67)
T 2qsf_X 20 VDYTPEDDQAISRLCELGFERDLVIQVYFAC 50 (67)
T ss_dssp CCCCHHHHHHHHHHHTTTCCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 6788114999999998499999999999990
No 80
>>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} (A:1-49)
Probab=83.12 E-value=0.58 Score=26.63 Aligned_cols=33 Identities=12% Similarity=0.197 Sum_probs=23.2
Q ss_pred HHHHH-HHHHHHHCCCHHHHHHHCCCC-HHHHHHH
Q ss_conf 99999-985010005101124431578-9999999
Q gi|254780553|r 69 RQWFM-LLQSVQGVGARVAMGVLSRIT-ATELVES 101 (207)
Q Consensus 69 r~~F~-~Li~V~GIGpK~AL~iLs~l~-~~~l~~a 101 (207)
++.|. .|-+|.||||++|-.+|..+. .+.+.+|
T Consensus 9 ~~~~~~~L~~I~gVG~~~ak~Ll~~Fgsi~~i~~A 43 (49)
T 1x2i_A 9 AERQRLIVEGLPHVSATLARRLLKHFGSVERVFTA 43 (49)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHHHHHHCSHHHHHHC
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHC
T ss_conf 99999998589997899999999970628888626
No 81
>>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination, helicase; 1.90A {Escherichia coli} (A:66-144)
Probab=82.78 E-value=0.78 Score=25.79 Aligned_cols=60 Identities=23% Similarity=0.416 Sum_probs=35.9
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-CCCCHHHHHHHHHHHHH
Q ss_conf 87510457116799999999742221101133443233333445555653158999999996-79998999999999985
Q gi|254780553|r 108 KVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN-LGYGQDQATTAVVSVLK 186 (207)
Q Consensus 108 ~~L~~vpGIGkKtA~rIi~ELk~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~AL~~-LGy~~~ea~~ai~~i~~ 186 (207)
..|.+|+|||+|+|-+|+.-+.-. .+...+.. +=..+|.. =|-.++-|++.+-++..
T Consensus 8 ~~L~~V~GIGpk~Al~iLs~~~~~--el~~aI~~--------------------~D~~~L~~ipGIG~KtAerii~eLk~ 65 (79)
T 1cuk_A 8 KELIKTNGVGPKLALAILSGMSAQ--QFVNAVER--------------------EEVGALVKLPGIGKKTAERLIVEMKD 65 (79)
T ss_dssp HHHHHSSSCCHHHHHHHHHHSCHH--HHHHHHHT--------------------TCHHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCHHHHHHHHCCCCHH--HHHHHHHH--------------------CCHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 987347884899999997579999--99999992--------------------89999841999889999999999998
Q ss_pred HCC
Q ss_conf 168
Q gi|254780553|r 187 KEK 189 (207)
Q Consensus 187 ~~~ 189 (207)
...
T Consensus 66 K~~ 68 (79)
T 1cuk_A 66 RFK 68 (79)
T ss_dssp HGG
T ss_pred HHH
T ss_conf 887
No 82
>>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} (A:149-197)
Probab=82.23 E-value=0.44 Score=27.42 Aligned_cols=30 Identities=37% Similarity=0.654 Sum_probs=24.1
Q ss_pred HHHHHHHH-HHHHHHHCCCHHHHHHHCCCCH
Q ss_conf 77999999-9850100051011244315789
Q gi|254780553|r 66 DLDRQWFM-LLQSVQGVGARVAMGVLSRITA 95 (207)
Q Consensus 66 ~~Er~~F~-~Li~V~GIGpK~AL~iLs~l~~ 95 (207)
...+.++. .|-+|.|||||.+-.+|..|..
T Consensus 6 ~r~k~~~~s~L~~IpGIG~k~~~~LL~~FgS 36 (49)
T 2bgw_A 6 SDVREWQLYILQSFPGIGRRTAERILERFGS 36 (49)
T ss_dssp CHHHHHHHHHHHTSTTCCHHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
T ss_conf 9888988888853568997899999998699
No 83
>>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 2.00A {Methanocaldococcus jannaschii} (A:38-150)
Probab=82.12 E-value=0.61 Score=26.50 Aligned_cols=31 Identities=23% Similarity=0.198 Sum_probs=18.1
Q ss_pred HHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9999999851566875104571167999999997422211
Q gi|254780553|r 95 ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134 (207)
Q Consensus 95 ~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~K~~~ 134 (207)
.+.++.+|..+.+ .-+.|.++.-.|..++..
T Consensus 8 fe~Lv~~Il~Qq~---------s~~~a~~~~~~l~~~~~~ 38 (113)
T 3fhf_A 8 FKELCFCILTANF---------TAEGGIRIQKEIGDGFLT 38 (113)
T ss_dssp HHHHHHHHHHTTS---------CHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHCCCC---------CHHHHHHHHHHHHHHHHC
T ss_conf 9999999961458---------699999999999999871
No 84
>>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix- hairpin-helix, HHH motif, three helix bundle; 2.30A {Methanopyrus kandleri} (A:181-225,A:375-471)
Probab=81.53 E-value=2 Score=23.02 Aligned_cols=30 Identities=13% Similarity=0.249 Sum_probs=20.1
Q ss_pred HHHHHCCCHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 999851566875104571167999999997
Q gi|254780553|r 99 VESIILQNSKVIAQIPGISMKIASRIMTEL 128 (207)
Q Consensus 99 ~~aI~~~D~~~L~~vpGIGkKtA~rIi~EL 128 (207)
++|...-...-|++-.|+|.|||+|++-..
T Consensus 73 yraaveiqlaeltkkegvgrktaerllraf 102 (142)
T 2csb_A 73 YRAAVEIQLAELTKKEGVGRKTAERLLRAF 102 (142)
T ss_dssp HHHHHHHHHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 988898779977654064565799999970
No 85
>>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} (A:)
Probab=80.91 E-value=1 Score=24.94 Aligned_cols=30 Identities=23% Similarity=0.290 Sum_probs=22.9
Q ss_pred CCHHHHHHCCCCCHHHHHHHHHHH-HHHHHH
Q ss_conf 566875104571167999999997-422211
Q gi|254780553|r 105 QNSKVIAQIPGISMKIASRIMTEL-KGKAIS 134 (207)
Q Consensus 105 ~D~~~L~~vpGIGkKtA~rIi~EL-k~K~~~ 134 (207)
...-.|..+||||+++|++|+-+= ++.+.+
T Consensus 129 ~i~~~L~~I~GiG~~~a~~Iie~Re~g~F~S 159 (205)
T 2i5h_A 129 TRMHQLELLPGVGKKMMWAIIEERKKRPFES 159 (205)
T ss_dssp SSSBGGGGSTTCCHHHHHHHHHHHHHSCCCS
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf 8789887444515899999999975489889
No 86
>>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} (A:309-368)
Probab=80.69 E-value=1.4 Score=24.17 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 5315899999999679998999999999
Q gi|254780553|r 156 MPSFAINAISALVNLGYGQDQATTAVVS 183 (207)
Q Consensus 156 ~~~~~~d~~~AL~~LGy~~~ea~~ai~~ 183 (207)
.....++.+..|+.|||++..+++|+..
T Consensus 13 ~~~~~e~~i~~L~~MGF~~~~a~~AL~~ 40 (60)
T 1oqy_A 13 VTPQEKEAIERLKALGFPESLVIQAYFA 40 (60)
T ss_dssp CCTTTHHHHHHHHHHTCCSHHHHHHTSS
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9989999999999849998999999998
No 87
>>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A (A:112-130,A:199-234)
Probab=80.28 E-value=0.86 Score=25.50 Aligned_cols=19 Identities=16% Similarity=0.242 Sum_probs=15.3
Q ss_pred HHHHHHCCCCCHHHHHHHH
Q ss_conf 6875104571167999999
Q gi|254780553|r 107 SKVIAQIPGISMKIASRIM 125 (207)
Q Consensus 107 ~~~L~~vpGIGkKtA~rIi 125 (207)
.+.|++++|||+.||+-..
T Consensus 30 i~~Lt~IkGIG~WTAem~L 48 (55)
T 2jhn_A 30 YEYLTSFKGIGRWTAELVL 48 (55)
T ss_dssp HHHHHTSTTCCHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHH
T ss_conf 8898753782899999999
No 88
>>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} (A:)
Probab=80.16 E-value=1.3 Score=24.29 Aligned_cols=30 Identities=17% Similarity=0.297 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 653158999999996799989999999999
Q gi|254780553|r 155 SMPSFAINAISALVNLGYGQDQATTAVVSV 184 (207)
Q Consensus 155 ~~~~~~~d~~~AL~~LGy~~~ea~~ai~~i 184 (207)
......++.+..|+.+||++..+++|+...
T Consensus 14 ~~~~~~~~~i~~L~~MGF~~~~a~~AL~~~ 43 (63)
T 1wgn_A 14 MLSPSERQCVETVVNMGYSYECVLRAMKKK 43 (63)
T ss_dssp TCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 468057999999998699899999999992
No 89
>>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=79.60 E-value=2.8 Score=22.07 Aligned_cols=29 Identities=21% Similarity=0.311 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 65315899999999679998999999999
Q gi|254780553|r 155 SMPSFAINAISALVNLGYGQDQATTAVVS 183 (207)
Q Consensus 155 ~~~~~~~d~~~AL~~LGy~~~ea~~ai~~ 183 (207)
.....-++++..|+.+||++..+++|+..
T Consensus 24 ~~~~~~~~~i~~L~~MGF~~~~a~~AL~~ 52 (83)
T 2dai_A 24 EDERVDEAALRQLTEMGFPENRATKALQL 52 (83)
T ss_dssp CSSSCCHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 23567999999999969999999999999
No 90
>>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} (A:)
Probab=79.46 E-value=2.5 Score=22.42 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 58999999996799989999999999
Q gi|254780553|r 159 FAINAISALVNLGYGQDQATTAVVSV 184 (207)
Q Consensus 159 ~~~d~~~AL~~LGy~~~ea~~ai~~i 184 (207)
..++.+.-|+.+||++.++.+|+..-
T Consensus 3 ~~~~~v~~L~~MGF~~~~a~~AL~~~ 28 (43)
T 2g3q_A 3 PKSLAVEELSGMGFTEEEAHNALEKC 28 (43)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 84999999997699999999999992
No 91
>>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} (A:)
Probab=79.32 E-value=3.4 Score=21.57 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 53158999999996799989999999999
Q gi|254780553|r 156 MPSFAINAISALVNLGYGQDQATTAVVSV 184 (207)
Q Consensus 156 ~~~~~~d~~~AL~~LGy~~~ea~~ai~~i 184 (207)
.....++.+..|+.+||++.++++|+...
T Consensus 25 ~~~~~e~~i~~L~~MGF~~~~a~~AL~~~ 53 (73)
T 1vg5_A 25 RVAASEEQIQKLVAMGFDRTQVEVALAAA 53 (73)
T ss_dssp CSCCCHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 87868999999999399999999999995
No 92
>>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} (B:229-310)
Probab=79.00 E-value=1.3 Score=24.39 Aligned_cols=36 Identities=14% Similarity=0.082 Sum_probs=25.0
Q ss_pred CHHHHHHHHHCC-C-----HHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 899999998515-6-----68751045711679999999974
Q gi|254780553|r 94 TATELVESIILQ-N-----SKVIAQIPGISMKIASRIMTELK 129 (207)
Q Consensus 94 ~~~~l~~aI~~~-D-----~~~L~~vpGIGkKtA~rIi~ELk 129 (207)
+...+.+....+ + .-+|+.+.|||+++|.+|+-.+.
T Consensus 9 d~~~~~ri~~~~~~~~k~i~~aLt~i~GIG~~~A~~I~~~~g 50 (82)
T 2zbk_B 9 DREEIKILINNLKRDYTIKEFLVNEFQSIGDTTADKILELAG 50 (82)
T ss_dssp CHHHHHHHHTTCSSCCBHHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHC
T ss_conf 267778877502321013345515764676087776665523
No 93
>>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase/DNA complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} (A:183-237)
Probab=78.70 E-value=0.92 Score=25.33 Aligned_cols=13 Identities=31% Similarity=0.603 Sum_probs=11.0
Q ss_pred CCCCCHHHHHHHH
Q ss_conf 4571167999999
Q gi|254780553|r 113 IPGISMKIASRIM 125 (207)
Q Consensus 113 vpGIGkKtA~rIi 125 (207)
+||||++|++|+-
T Consensus 1 i~GIG~~t~~kL~ 13 (55)
T 1jx4_A 1 VPGIGNITAEKLK 13 (55)
T ss_dssp STTCCHHHHHHHH
T ss_pred CCCCCHHHHHHHH
T ss_conf 2599667999999
No 94
>>3i1m_M 30S ribosomal protein S13; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M 2qal_M* 1p6g_M 1p87_M 2aw7_M 2avy_M 2i2u_M 2i2p_M* 2qan_M* 2qb9_M* 2qbb_M* 2qbd_M ... (M:1-63)
Probab=78.44 E-value=1.3 Score=24.37 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=17.9
Q ss_pred HHHHHCCCCCHHHHHHHHHHH
Q ss_conf 875104571167999999997
Q gi|254780553|r 108 KVIAQIPGISMKIASRIMTEL 128 (207)
Q Consensus 108 ~~L~~vpGIGkKtA~rIi~EL 128 (207)
-+|+.+.|||+++|.+|+-.+
T Consensus 17 ~aLt~i~GIG~~~A~~Ic~~~ 37 (63)
T 3i1m_M 17 IALTSIYGVGKTRSKAILAAA 37 (63)
T ss_dssp HHGGGSTTCCHHHHHHHHTTT
T ss_pred EEEECEECCCHHHHHHHHHHC
T ss_conf 875344573899999999991
No 95
>>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} (A:)
Probab=78.33 E-value=2.8 Score=22.08 Aligned_cols=27 Identities=15% Similarity=0.338 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 315899999999679998999999999
Q gi|254780553|r 157 PSFAINAISALVNLGYGQDQATTAVVS 183 (207)
Q Consensus 157 ~~~~~d~~~AL~~LGy~~~ea~~ai~~ 183 (207)
++..++.+.-|+.+||++..+++|+..
T Consensus 5 ~~~~e~~v~~L~~MGF~~~~a~~AL~~ 31 (49)
T 1ify_A 5 GSEYETMLTEIMSMGYERERVVAALRA 31 (49)
T ss_dssp SHHHHHHHHHHHHTTCCHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 216999999999800279999999998
No 96
>>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} (A:126-224)
Probab=77.97 E-value=4.2 Score=20.93 Aligned_cols=30 Identities=13% Similarity=0.276 Sum_probs=24.6
Q ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 653158999999996799989999999999
Q gi|254780553|r 155 SMPSFAINAISALVNLGYGQDQATTAVVSV 184 (207)
Q Consensus 155 ~~~~~~~d~~~AL~~LGy~~~ea~~ai~~i 184 (207)
......++.+.-|+.+||++..+++|+...
T Consensus 38 ~~~~~~e~~i~~L~eMGF~~~~a~~AL~~~ 67 (99)
T 1oqy_A 38 VTGSEYETMLTEIMSMGYERERVVAALRAS 67 (99)
T ss_dssp CCTTTHHHHHHHHHTTTCCSHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 123157788999985063779999999987
No 97
>>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} (M:1-64)
Probab=76.38 E-value=1 Score=24.94 Aligned_cols=21 Identities=19% Similarity=0.200 Sum_probs=17.8
Q ss_pred HHHHHCCCCCHHHHHHHHHHH
Q ss_conf 875104571167999999997
Q gi|254780553|r 108 KVIAQIPGISMKIASRIMTEL 128 (207)
Q Consensus 108 ~~L~~vpGIGkKtA~rIi~EL 128 (207)
-+|+++.|||+++|.+||-.|
T Consensus 17 ~aLt~I~GIG~~~A~~Ic~~l 37 (64)
T 2vqe_M 17 VALTYIYGIGKARAKEALEKT 37 (64)
T ss_dssp HHHTTSSSCCSHHHHHHTTTT
T ss_pred EEEEEEECCCHHHHHHHHHHC
T ss_conf 873306581899999999982
No 98
>>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} (A:)
Probab=75.98 E-value=3.1 Score=21.75 Aligned_cols=24 Identities=13% Similarity=0.447 Sum_probs=21.3
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 899999999679998999999999
Q gi|254780553|r 160 AINAISALVNLGYGQDQATTAVVS 183 (207)
Q Consensus 160 ~~d~~~AL~~LGy~~~ea~~ai~~ 183 (207)
-++.+..|+.+||++..+++|+..
T Consensus 9 ~~~~i~~L~~MGF~~~~a~~AL~~ 32 (63)
T 1wji_A 9 DEKALKHITEMGFSKEASRQALMD 32 (63)
T ss_dssp CHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 999999999969999999999999
No 99
>>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} (A:)
Probab=75.03 E-value=4.6 Score=20.67 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 158999999996799989999999999
Q gi|254780553|r 158 SFAINAISALVNLGYGQDQATTAVVSV 184 (207)
Q Consensus 158 ~~~~d~~~AL~~LGy~~~ea~~ai~~i 184 (207)
..-.+++..|+.+||++..+++|+...
T Consensus 27 ~~d~~~l~~L~~MGF~~~~a~kAL~~t 53 (84)
T 1vek_A 27 VANEEIVAQLVSMGFSQLHCQKAAINT 53 (84)
T ss_dssp CCCHHHHHHHHHHTCCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 899999999999599999999999998
No 100
>>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=74.34 E-value=2.3 Score=22.65 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=20.8
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 999999996799989999999999
Q gi|254780553|r 161 INAISALVNLGYGQDQATTAVVSV 184 (207)
Q Consensus 161 ~d~~~AL~~LGy~~~ea~~ai~~i 184 (207)
.+.++.|+.+||++..|++|+...
T Consensus 20 ~~~v~~L~~MGF~~~~a~kAL~~t 43 (64)
T 2cpw_A 20 GSALDVLLSMGFPRARAQKALAST 43 (64)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 999999999699899999999997
No 101
>>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} (A:)
Probab=73.49 E-value=4.2 Score=20.91 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 315899999999679998999999999
Q gi|254780553|r 157 PSFAINAISALVNLGYGQDQATTAVVS 183 (207)
Q Consensus 157 ~~~~~d~~~AL~~LGy~~~ea~~ai~~ 183 (207)
...-.+.+.-|+.+||++..+++|+..
T Consensus 26 ~~~~~~~i~~L~~MGF~~~~a~~AL~~ 52 (83)
T 1veg_A 26 ASPSQESINQLVYMGFDTVVAEAALRV 52 (83)
T ss_dssp CCCCHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 797788899999834238889999999
No 102
>>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans} (A:119-241)
Probab=71.58 E-value=4.3 Score=20.85 Aligned_cols=34 Identities=21% Similarity=0.222 Sum_probs=26.3
Q ss_pred CHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 8999999985156687510457116799999999742
Q gi|254780553|r 94 TATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 (207)
Q Consensus 94 ~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~ 130 (207)
+.++|..|..++- +.++||+|.||.++|..-++-
T Consensus 2 tleeL~~a~~~~~---i~~l~gfG~K~~~~il~gl~~ 35 (123)
T 2w9m_A 2 SLERLREAAESGE---LAGLKGFGAKSAATILENVVF 35 (123)
T ss_dssp SHHHHHHHHHHTT---TTTSTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCC---HHHHHCCCHHHHHHHHHHHHH
T ss_conf 8999999876088---012110138899999987878
No 103
>>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} (A:707-781)
Probab=70.52 E-value=5.1 Score=20.35 Aligned_cols=25 Identities=24% Similarity=0.496 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 5899999999679998999999999
Q gi|254780553|r 159 FAINAISALVNLGYGQDQATTAVVS 183 (207)
Q Consensus 159 ~~~d~~~AL~~LGy~~~ea~~ai~~ 183 (207)
...+++..|+.+||++..+++|+..
T Consensus 13 ~~~~~i~~L~~MGF~~~~a~~AL~~ 37 (75)
T 3ihp_A 13 PPEDCVTTIVSMGFSRDQALKALRA 37 (75)
T ss_dssp CCHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 5477651045416799999999986
No 104
>>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=70.45 E-value=4.4 Score=20.78 Aligned_cols=25 Identities=24% Similarity=0.496 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 5899999999679998999999999
Q gi|254780553|r 159 FAINAISALVNLGYGQDQATTAVVS 183 (207)
Q Consensus 159 ~~~d~~~AL~~LGy~~~ea~~ai~~ 183 (207)
...+.+..|+++||++..+++|+..
T Consensus 8 ~~~~~i~~L~~MGF~~~~a~~AL~~ 32 (63)
T 2dak_A 8 PPEDCVTTIVSMGFSRDQALKALRA 32 (63)
T ss_dssp CCHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 8999999999969999999999999
No 105
>>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} (A:637-706)
Probab=69.45 E-value=3.4 Score=21.49 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 5899999999679998999999999
Q gi|254780553|r 159 FAINAISALVNLGYGQDQATTAVVS 183 (207)
Q Consensus 159 ~~~d~~~AL~~LGy~~~ea~~ai~~ 183 (207)
.-.++++.|+.+||++..|++|+..
T Consensus 15 ~d~~~i~~L~~MGF~~~~a~kAL~~ 39 (70)
T 3ihp_A 15 LDESVIIQLVEMGFPMDACRKAVYY 39 (70)
T ss_dssp --CHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 4415565676438887875666652
No 106
>>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} (A:427-542)
Probab=67.31 E-value=1.7 Score=23.57 Aligned_cols=12 Identities=17% Similarity=0.584 Sum_probs=6.3
Q ss_pred HHHHHCCCHHHH
Q ss_conf 501000510112
Q gi|254780553|r 76 QSVQGVGARVAM 87 (207)
Q Consensus 76 i~V~GIGpK~AL 87 (207)
+.+.|+|+++--
T Consensus 18 l~i~glg~~~i~ 29 (116)
T 1dgs_A 18 MDIEGLGEKLIE 29 (116)
T ss_dssp SCCTTCCHHHHH
T ss_pred CCCCCCCHHHHH
T ss_conf 585665999999
No 107
>>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=66.57 E-value=6 Score=19.90 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.2
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 999999996799989999999999
Q gi|254780553|r 161 INAISALVNLGYGQDQATTAVVSV 184 (207)
Q Consensus 161 ~d~~~AL~~LGy~~~ea~~ai~~i 184 (207)
.+.+..|+.+||++..+++|+..-
T Consensus 10 ~~~l~~L~eMGF~~~~a~kAL~~t 33 (74)
T 2dag_A 10 ESVIIQLVEMGFPMDACRKAVYYT 33 (74)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 999999999599999999999997
No 108
>>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} (A:)
Probab=62.93 E-value=3 Score=21.90 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=19.9
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 99999999679998999999999
Q gi|254780553|r 161 INAISALVNLGYGQDQATTAVVS 183 (207)
Q Consensus 161 ~d~~~AL~~LGy~~~ea~~ai~~ 183 (207)
+++++-|+++||++..+++|+..
T Consensus 5 e~~i~~L~~MGF~~~~a~~AL~~ 27 (47)
T 1dv0_A 5 KEAIERLKALGFPESLVIQAYFA 27 (47)
T ss_dssp HHHHTTTTTTTCCHHHHHHHHTT
T ss_pred HHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99999999839988899999998
No 109
>>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} (A:)
Probab=60.50 E-value=6.8 Score=19.52 Aligned_cols=23 Identities=22% Similarity=0.517 Sum_probs=20.3
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 99999996799989999999999
Q gi|254780553|r 162 NAISALVNLGYGQDQATTAVVSV 184 (207)
Q Consensus 162 d~~~AL~~LGy~~~ea~~ai~~i 184 (207)
+.+..|+.+||++..|++|+..-
T Consensus 11 ~~l~~L~eMGF~~~~a~kAL~~t 33 (64)
T 1whc_A 11 TALESLIEMGFPRGRAEKALALT 33 (64)
T ss_dssp CHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 99999999599999999999997
No 110
>>1fr3_A MOP, molybdate/tungstate binding protein; molybdate homeostasis, metal binding protein; 1.50A {Sporomusa ovata} (A:)
Probab=59.85 E-value=12 Score=17.77 Aligned_cols=47 Identities=19% Similarity=0.339 Sum_probs=38.9
Q ss_pred CEEEEEEEEEECC----EEEEEECCEEEEEECCHHHHHHCC-CCCCEEEEEE
Q ss_conf 2589999996099----799985883238970868898502-4798499999
Q gi|254780553|r 3 GKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFV 49 (207)
Q Consensus 3 ~~i~G~i~~~~~~----~ivi~v~GvGY~i~vs~~~~~~l~-~~g~~v~l~~ 49 (207)
..+.|+|.++.++ .+.++++|.-....++......|. +.|+.+...+
T Consensus 7 N~l~g~V~~i~~~~~~~~V~l~~~g~~l~a~IT~~s~~~L~L~~G~~v~a~i 58 (67)
T 1fr3_A 7 NKLEATVKEIVKGTVMAKIVMDYKGTELVAAITIDSVADLDLVPGDKVTALV 58 (67)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTEEEEEEEEHHHHHHHTCCTTCEEEEEE
T ss_pred CEEEEEEEEEEECCCEEEEEEEECCCEEEEECCHHHHHHCCCCCCCEEEEEE
T ss_conf 2999999999989971999999289699999198999767999999999999
No 111
>>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotein, serine/threonine-protein kinase; 2.80A {Schizosaccharomyces pombe} (B:272-336)
Probab=59.33 E-value=13 Score=17.71 Aligned_cols=40 Identities=15% Similarity=0.276 Sum_probs=27.0
Q ss_pred HHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 58999999996-7999899999999998516888898999999
Q gi|254780553|r 159 FAINAISALVN-LGYGQDQATTAVVSVLKKEKNIADDSQIIRL 200 (207)
Q Consensus 159 ~~~d~~~AL~~-LGy~~~ea~~ai~~i~~~~~~~~~~eelIk~ 200 (207)
+.++++.+|.. +||.+.++..|+..- +..++.|.=.++|+
T Consensus 10 id~~vv~kLs~tMGY~rdeI~eAL~~~--e~neIkDAY~likE 50 (65)
T 3h4j_B 10 ADSRIVSKLGEAMGFSEDYIVEALRSD--ENNEVKEAYNLLHE 50 (65)
T ss_dssp CCHHHHHHHHHTTCCCHHHHHHHTTSS--SCCSSTTHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHCC--CCCHHHHHHHHHHH
T ss_conf 689999999988299999999998676--74099999999987
No 112
>>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=58.10 E-value=6.4 Score=19.72 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=20.1
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 99999996799989999999999
Q gi|254780553|r 162 NAISALVNLGYGQDQATTAVVSV 184 (207)
Q Consensus 162 d~~~AL~~LGy~~~ea~~ai~~i 184 (207)
+.+.-|+.+||++..+++|+...
T Consensus 11 ~~l~~L~eMGF~~~~a~kAL~~t 33 (64)
T 2crn_A 11 SLLEPLLAMGFPVHTALKALAAT 33 (64)
T ss_dssp SSHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 88889998367389999999985
No 113
>>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A* (A:973-1041)
Probab=57.96 E-value=6.4 Score=19.69 Aligned_cols=18 Identities=22% Similarity=0.468 Sum_probs=15.9
Q ss_pred CCCCHHHHHHHHHHHHHH
Q ss_conf 571167999999997422
Q gi|254780553|r 114 PGISMKIASRIMTELKGK 131 (207)
Q Consensus 114 pGIGkKtA~rIi~ELk~K 131 (207)
||||.+.|++|+-+-+.+
T Consensus 1 pGig~~~a~~Iv~~R~~g 18 (69)
T 3f2b_A 1 PGLGTNVAQAIVRAREEG 18 (69)
T ss_dssp TTCCHHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHCCC
T ss_conf 898999999999986579
No 114
>>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} (A:635-702)
Probab=55.05 E-value=11 Score=18.20 Aligned_cols=51 Identities=18% Similarity=0.238 Sum_probs=32.4
Q ss_pred HHHHHCCCHHHHHHHCCC--CHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 501000510112443157--8999999985156687510457116799999999742221
Q gi|254780553|r 76 QSVQGVGARVAMGVLSRI--TATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAI 133 (207)
Q Consensus 76 i~V~GIGpK~AL~iLs~l--~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~K~~ 133 (207)
+.|.|||-+-|-.+-+.- ++++|+.+ +. .+ +.-+|+|+|++|+-+++-++.
T Consensus 1 v~i~gVGR~RAR~Ly~aGiks~~dla~a----p~-~l--~~~iG~k~A~~I~~~a~~~~~ 53 (68)
T 2p6r_A 1 VRIRHIGRVRARKLYNAGIRNAEDIVRH----RE-KV--ASLIGRGIAERVVEGISVKSL 53 (68)
T ss_dssp HTSTTCCHHHHHHHHTTTCCSHHHHHHT----HH-HH--HHHHCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCHHHHHHHHHCCCCCHHHHHCC----CH-HH--HHHHCCCHHHHHHHHHHHHHH
T ss_conf 5889999999999998799999999749----88-78--977634638999999878762
No 115
>>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} (P:129-215)
Probab=54.96 E-value=15 Score=17.24 Aligned_cols=64 Identities=6% Similarity=-0.018 Sum_probs=49.8
Q ss_pred EEEEEEEEEECCEEEEEECCEEEEEECCHHHHHHCCCCCCEEEEEEEEEECCCCEEEEEEECHH
Q ss_conf 5899999960997999858832389708688985024798499999999738841899970677
Q gi|254780553|r 4 KIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDL 67 (207)
Q Consensus 4 ~i~G~i~~~~~~~ivi~v~GvGY~i~vs~~~~~~l~~~g~~v~l~~~~~vrEd~~~LyGF~~~~ 67 (207)
-+.|++..+.+..+.++.+|+-=.+..+.-.....-+.|+.+..++...-++..-.-.......
T Consensus 9 iv~g~V~~i~~~G~~V~l~~~~g~ip~~e~~~~~~~~~G~~i~~~v~~vd~~~~~i~ls~k~~~ 72 (87)
T 1hh2_P 9 VTTAEVIRVMGEWADIRIGKLETRLPKKEWIPGEEIKAGDLVKVYIIDVVKTTKGPKILVSRRV 72 (87)
T ss_dssp EEEEEEEEECSSEEEEEETTEEEEEEGGGSCTTCCCCTTCEEEEEEEEEEEETTEEEEEEESSS
T ss_pred EEEEEEEEEECCCEEEECCCEEEEECHHHCCCCCCCCCCCEEEEEEEEEEECCCCCEEEEECCC
T ss_conf 8999999996143599618616871778869865679999899999999874889779998898
No 116
>>1gnl_A HCP, hybrid cluster protein; anaerobic desulfovibrio desulfuricans, iron anomalous; HET: FSO; 1.25A {Desulfovibrio desulfuricans} (A:1-218)
Probab=54.57 E-value=15 Score=17.20 Aligned_cols=36 Identities=17% Similarity=0.199 Sum_probs=30.2
Q ss_pred HHCCCCHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHH
Q ss_conf 9679998999999999985168-88898999999999
Q gi|254780553|r 168 VNLGYGQDQATTAVVSVLKKEK-NIADDSQIIRLALR 203 (207)
Q Consensus 168 ~~LGy~~~ea~~ai~~i~~~~~-~~~~~eelIk~aLk 203 (207)
..|||...++..-+.+++.... +..+.+++|..+|+
T Consensus 161 ~~Lg~~d~eI~~F~~~aL~~~~~~~~~~~eli~l~le 197 (218)
T 1gnl_A 161 DVLGKHENSLDAFMQEALAKTLDDSLSVADLVALTLE 197 (218)
T ss_dssp HHTTCCCHHHHHHHHHHHHHTTCTTCCHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 8745552388999999999848995237899999988
No 117
>>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} (A:)
Probab=54.45 E-value=15 Score=17.18 Aligned_cols=26 Identities=12% Similarity=0.210 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHCCCC-HHHHHHHHHH
Q ss_conf 1589999999967999-8999999999
Q gi|254780553|r 158 SFAINAISALVNLGYG-QDQATTAVVS 183 (207)
Q Consensus 158 ~~~~d~~~AL~~LGy~-~~ea~~ai~~ 183 (207)
....+.++.|..+||. +..+.+|+..
T Consensus 17 ~~~~~~l~~L~~MGF~d~~~~~~AL~~ 43 (67)
T 2dna_A 17 VRFSKEMECLQAMGFVNYNANLQALIA 43 (67)
T ss_dssp HHTHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 889999999999389969999999999
No 118
>>3ci0_K Pseudopilin GSPK; general secretory pathway, pseudopilus, type 4 pilin biogenesis, methylation, protein transport; 2.20A {Escherichia coli} (K:76-256)
Probab=53.96 E-value=4.9 Score=20.47 Aligned_cols=25 Identities=28% Similarity=0.061 Sum_probs=17.4
Q ss_pred CHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 6779999999850100051011244
Q gi|254780553|r 65 SDLDRQWFMLLQSVQGVGARVAMGV 89 (207)
Q Consensus 65 ~~~Er~~F~~Li~V~GIGpK~AL~i 89 (207)
+..-.++|..|+...|+.+..|-.+
T Consensus 16 ~~~~~~~~~~ll~~~~~~~~~a~~~ 40 (181)
T 3ci0_K 16 RPLAVQQLIALISRLDVPAYRAELI 40 (181)
T ss_dssp SCHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 6799999999999849986789999
No 119
>>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A (A:)
Probab=51.50 E-value=8.2 Score=18.98 Aligned_cols=17 Identities=12% Similarity=0.405 Sum_probs=13.9
Q ss_pred HHHHHCCCCCHHHHHHH
Q ss_conf 87510457116799999
Q gi|254780553|r 108 KVIAQIPGISMKIASRI 124 (207)
Q Consensus 108 ~~L~~vpGIGkKtA~rI 124 (207)
..|+.+|+||+++++.+
T Consensus 4 ~~l~~LPNiG~~~e~~L 20 (93)
T 3bqs_A 4 ANLSELPNIGKVLEQDL 20 (93)
T ss_dssp SCGGGSTTCCHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHH
T ss_conf 77856899999999999
No 120
>>1szp_A DNA repair protein RAD51; homologous recombination, asymmetry, RAD51 filament, DNA binding protein; HET: DNA; 3.25A {Saccharomyces cerevisiae} (A:26-81)
Probab=49.51 E-value=14 Score=17.35 Aligned_cols=32 Identities=25% Similarity=0.353 Sum_probs=26.2
Q ss_pred HHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 99985156687510457116799999999742
Q gi|254780553|r 99 VESIILQNSKVIAQIPGISMKIASRIMTELKG 130 (207)
Q Consensus 99 ~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~ 130 (207)
+++|+.--.+.|+.+.||+.-+|++|+-+=+.
T Consensus 3 ve~ia~at~k~L~~ikGisE~ka~KIi~aA~k 34 (56)
T 1szp_A 3 AEAVAYAPRKDLLEIKGISEAKADKLLNEAAR 34 (56)
T ss_dssp HHHHHHSCSHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99997389999987639999999999999998
No 121
>>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens} (A:)
Probab=48.14 E-value=16 Score=17.03 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=17.9
Q ss_pred HHHHHHHCCCCHHHHHHHHHH
Q ss_conf 999999679998999999999
Q gi|254780553|r 163 AISALVNLGYGQDQATTAVVS 183 (207)
Q Consensus 163 ~~~AL~~LGy~~~ea~~ai~~ 183 (207)
-++-|.+.||+..++.+|+.-
T Consensus 10 eI~~Lm~~GYs~~~V~rAL~I 30 (56)
T 2juj_A 10 EIENLMSQGYSYQDIQKALVI 30 (56)
T ss_dssp HHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHH
T ss_conf 999999866659999999999
No 122
>>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A (A:)
Probab=47.96 E-value=16 Score=17.02 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=17.9
Q ss_pred HHHHHHHCCCCHHHHHHHHHH
Q ss_conf 999999679998999999999
Q gi|254780553|r 163 AISALVNLGYGQDQATTAVVS 183 (207)
Q Consensus 163 ~~~AL~~LGy~~~ea~~ai~~ 183 (207)
-++-|.+.||+..++.+|+.-
T Consensus 14 eI~~Lm~~GYs~~dv~rAL~I 34 (52)
T 2ooa_A 14 KIAKLXGEGYAFEEVKRALEI 34 (52)
T ss_dssp HHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHH
T ss_conf 999999855439999999999
No 123
>>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} (A:)
Probab=46.97 E-value=17 Score=16.86 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=18.2
Q ss_pred HHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 9999996799989999999999
Q gi|254780553|r 163 AISALVNLGYGQDQATTAVVSV 184 (207)
Q Consensus 163 ~~~AL~~LGy~~~ea~~ai~~i 184 (207)
-+.-|+++||++-|+.+++...
T Consensus 7 kiaqlvsmgfdpleaaqaldaa 28 (40)
T 1z96_A 7 KIAQLVSMGFDPLEAAQALDAA 28 (40)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHHHCCCCHHHHHHHHHHH
T ss_conf 9999998178878999887540
No 124
>>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens} (A:)
Probab=46.22 E-value=16 Score=17.07 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=17.7
Q ss_pred HHHHHHHCCCCHHHHHHHHHH
Q ss_conf 999999679998999999999
Q gi|254780553|r 163 AISALVNLGYGQDQATTAVVS 183 (207)
Q Consensus 163 ~~~AL~~LGy~~~ea~~ai~~ 183 (207)
-++-|.++||+..++.+|+.-
T Consensus 7 eI~~Lm~~GYs~~~v~rAL~I 27 (46)
T 2oo9_A 7 EIENLXSQGYSYQDIQKALVI 27 (46)
T ss_dssp HHHHHHHTTBCHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHH
T ss_conf 999999867769999999999
No 125
>>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae TIGR4} (A:136-219)
Probab=45.23 E-value=21 Score=16.25 Aligned_cols=54 Identities=7% Similarity=-0.055 Sum_probs=44.5
Q ss_pred EEEEEEEEEECCEEEEEECCEEEEEECCHHHHHHCCCCCCEEEEEEEEEECCCC
Q ss_conf 589999996099799985883238970868898502479849999999973884
Q gi|254780553|r 4 KIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ 57 (207)
Q Consensus 4 ~i~G~i~~~~~~~ivi~v~GvGY~i~vs~~~~~~l~~~g~~v~l~~~~~vrEd~ 57 (207)
-..|+|..+.+-.+.++..+...+-++|.+.++.--+.|+.++..+-..=.++.
T Consensus 20 ~~~g~V~~i~~~G~fV~l~~~~~eGlv~~sel~~~~~vGd~v~v~v~~vd~~~~ 73 (84)
T 3go5_A 20 NWPAIVYRLKLSGTFVYLPENNXLGFIHPSERYAEPRLGQVLDARVIGFREVDR 73 (84)
T ss_dssp EEEEEEEEEETTEEEEEETTTTEEEEECGGGCSSCCCTTCEEEEEEEEEETTTT
T ss_pred EEEEEEEEEECCCCEEEECCCCEEEEECCCCCCCCCCCCCEEEEEEEEEECCCC
T ss_conf 999999999748718984378789996354124446757489999999984376
No 126
>>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus} (A:)
Probab=44.29 E-value=18 Score=16.78 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=17.8
Q ss_pred HHHHHHHCCCCHHHHHHHHHH
Q ss_conf 999999679998999999999
Q gi|254780553|r 163 AISALVNLGYGQDQATTAVVS 183 (207)
Q Consensus 163 ~~~AL~~LGy~~~ea~~ai~~ 183 (207)
-++-|.+.||+..++.+|+.-
T Consensus 12 eI~~Lm~~GYs~~~v~rAL~I 32 (53)
T 2d9s_A 12 EIERLMSQGYSYQDIQKALVI 32 (53)
T ss_dssp HHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHH
T ss_conf 999999855339999999999
No 127
>>3bbn_M Ribosomal protein S13; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Oryza sativa} (M:)
Probab=44.20 E-value=10 Score=18.37 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHCCC
Q ss_conf 99999998501000510112443157
Q gi|254780553|r 68 DRQWFMLLQSVQGVGARVAMGVLSRI 93 (207)
Q Consensus 68 Er~~F~~Li~V~GIGpK~AL~iLs~l 93 (207)
.+.++--|..+.|||++.|..|+..+
T Consensus 57 ~K~i~~ALt~IyGIG~~~A~~Ic~~l 82 (145)
T 3bbn_M 57 HKRVEYSLQYIHGIGRSRSRQILLDL 82 (145)
T ss_dssp SSBTTTGGGGSTTCCSSTTTGGGTTT
T ss_pred CCEEEEEEEEEECCCHHHHHHHHHHC
T ss_conf 97889986537550899999999986
No 128
>>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC transporter; 1.80A {Treponema pallidum} (A:196-313)
Probab=43.27 E-value=23 Score=16.05 Aligned_cols=45 Identities=13% Similarity=0.065 Sum_probs=38.0
Q ss_pred CHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 899999998515668751045711679999999974222110113
Q gi|254780553|r 94 TATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSV 138 (207)
Q Consensus 94 ~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~K~~~~~~~ 138 (207)
...++++.|...+++.+-.=|...+|.+++|.-+++-++..++..
T Consensus 39 ~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~~~~~~~l~p~ 83 (118)
T 1toa_A 39 DMQELAAFIAQRKLPAIFIESSIPHKNVEALRDAVQARGHVVQIG 83 (118)
T ss_dssp HHHHHHHHHHHTTCSEEEEETTSCTHHHHHHHHHHHTTTCCCEEE
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEECCC
T ss_conf 999999999864996899848999089999999857884132557
No 129
>>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} (T:1-19,T:58-205)
Probab=42.05 E-value=2.6 Score=22.28 Aligned_cols=12 Identities=17% Similarity=-0.031 Sum_probs=5.0
Q ss_pred HHHHHHHHHCCC
Q ss_conf 999999996799
Q gi|254780553|r 161 INAISALVNLGY 172 (207)
Q Consensus 161 ~d~~~AL~~LGy 172 (207)
..+...|..+|+
T Consensus 59 ~~~~~~l~~~gi 70 (167)
T 1bgx_T 59 ALIKELVDLLGL 70 (167)
T ss_dssp GTHHHHHHHTTC
T ss_pred HHHHHHHHHCCC
T ss_conf 999999997899
No 130
>>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} (B:)
Probab=40.29 E-value=25 Score=15.75 Aligned_cols=28 Identities=7% Similarity=0.154 Sum_probs=21.0
Q ss_pred HCCCHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 5156687510457116799999999742
Q gi|254780553|r 103 ILQNSKVIAQIPGISMKIASRIMTELKG 130 (207)
Q Consensus 103 ~~~D~~~L~~vpGIGkKtA~rIi~ELk~ 130 (207)
..-...-|.++||+|+|+.+.|.--|+.
T Consensus 43 ~~~s~~dLl~i~nlG~ksl~EI~~~L~~ 70 (79)
T 3gfk_B 43 ANKTEEDMMKVRNLGRKSLEEVKAKLEE 70 (79)
T ss_dssp TTCCHHHHTTSTTCHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 8789999985789867369999999998
No 131
>>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} (B:)
Probab=39.73 E-value=26 Score=15.69 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHHCCCC-HHHHHHHHHHH
Q ss_conf 1589999999967999-89999999999
Q gi|254780553|r 158 SFAINAISALVNLGYG-QDQATTAVVSV 184 (207)
Q Consensus 158 ~~~~d~~~AL~~LGy~-~~ea~~ai~~i 184 (207)
....+.++-|..+||. +..+.+|+...
T Consensus 15 ~~~~~~l~~L~~MGF~d~~~~~~AL~~t 42 (58)
T 1wr1_B 15 ERYEHQLRQLNDMGFFDFDRNVAALRRS 42 (58)
T ss_dssp HHTHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHC
T ss_conf 9889999999994999789999999991
No 132
>>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A (A:)
Probab=39.02 E-value=26 Score=15.62 Aligned_cols=39 Identities=10% Similarity=-0.015 Sum_probs=31.8
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 899999999679998999999999985168888989999
Q gi|254780553|r 160 AINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQII 198 (207)
Q Consensus 160 ~~d~~~AL~~LGy~~~ea~~ai~~i~~~~~~~~~~eelI 198 (207)
..|+..+|.++|+++.++...+..+..+.....+.+|-+
T Consensus 51 ~~el~~~l~~~gl~~~el~~i~~~~D~d~~G~l~~~EF~ 89 (121)
T 3fia_A 51 GDQARNFFFQSGLPQPVLAQIWALADXNNDGRXDQVEFS 89 (121)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHCTTCSSEECHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHH
T ss_conf 999999999929999999999998478999918699999
No 133
>>2j8s_A ACRB, acriflavine resistance protein B; membrane protein/complex, designed ankyrin repeat protein, multidrug resistance protein; HET: LMT LMU; 2.54A {Escherichia coli} PDB: 2dhh_A 1iwg_A 2dr6_A* 2drd_A* 2hqf_A 2hqg_A 2hqd_A 2hqc_A 2i6w_A 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 1t9x_A* 1t9t_A* 1t9v_A* ... (A:135-181,A:275-329,A:568-673)
Probab=36.18 E-value=24 Score=15.91 Aligned_cols=24 Identities=8% Similarity=0.209 Sum_probs=11.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 457116799999999742221101
Q gi|254780553|r 113 IPGISMKIASRIMTELKGKAISLS 136 (207)
Q Consensus 113 vpGIGkKtA~rIi~ELk~K~~~~~ 136 (207)
-||..-...++++-++.+.+.+..
T Consensus 114 P~Gtsle~T~~~~~~ie~~l~~~~ 137 (208)
T 2j8s_A 114 PAGATQERTQKVLNEVTHYYLTKE 137 (208)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 330139999999999999874026
No 134
>>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A (A:178-286)
Probab=35.61 E-value=19 Score=16.58 Aligned_cols=46 Identities=24% Similarity=0.190 Sum_probs=38.8
Q ss_pred CHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 8999999985156687510457116799999999742221101133
Q gi|254780553|r 94 TATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVV 139 (207)
Q Consensus 94 ~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~K~~~~~~~~ 139 (207)
...++++.|.+.+++.+-.-|..+.|++++|.-++..+...+....
T Consensus 39 ~i~~l~~~ik~~~i~~i~~e~~~~~~~~~~ia~~~~~~~~~l~~l~ 84 (109)
T 3gi1_A 39 QLKEIQDFVKEYNVKTIFAEDNVNPKIAHAIAKSTGAKVKTLSPLE 84 (109)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTSCTHHHHHHHHTTTCEEEECCCSC
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCEEEECCCC
T ss_conf 9999999999759988999588993999999998299878747776
No 135
>>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domain;C-TAK1;P78;MARK3, alternative splicing; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2r0i_A 2hak_A 3iec_A (A:1-95,A:269-328)
Probab=34.95 E-value=30 Score=15.21 Aligned_cols=22 Identities=23% Similarity=0.551 Sum_probs=18.6
Q ss_pred HHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 9999999679998999999999
Q gi|254780553|r 162 NAISALVNLGYGQDQATTAVVS 183 (207)
Q Consensus 162 d~~~AL~~LGy~~~ea~~ai~~ 183 (207)
.-++++.++||++.+++..+.+
T Consensus 118 ~~~~~~~~mg~~~~~~~~sl~~ 139 (155)
T 3fe3_A 118 KRIDIMVGMGYSQEEIQESLSK 139 (155)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHT
T ss_pred HHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9999998769999999999986
No 136
>>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} (E:110-212)
Probab=33.42 E-value=21 Score=16.21 Aligned_cols=62 Identities=16% Similarity=0.151 Sum_probs=34.2
Q ss_pred EEEEEECCEEEEEECCHHHHHHCCCCC--CEEEEEEEEE-----ECCCCEEEEEEECHHHHHHHHHHHHHH
Q ss_conf 799985883238970868898502479--8499999999-----738841899970677999999985010
Q gi|254780553|r 16 YVLIDVQGVCYIIYCPIRTLSCLGKIG--DFCTLFVETH-----MRQDQIRLFGFLSDLDRQWFMLLQSVQ 79 (207)
Q Consensus 16 ~ivi~v~GvGY~i~vs~~~~~~l~~~g--~~v~l~~~~~-----vrEd~~~LyGF~~~~Er~~F~~Li~V~ 79 (207)
...|+..||||.+.+..+.+.- ..| ..+.+.+-.. -..+.+.++|..-..=-++-..+.+..
T Consensus 2 ~k~LelvGVGYra~~~~~~L~l--~LG~SH~i~~~iP~~I~v~~~~~t~i~i~G~dKq~vg~faa~Ir~~r 70 (103)
T 1nkw_E 2 TINLELRGVGFRAKLTGKALEM--NIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQLVGQVAANVRKVR 70 (103)
T ss_pred EEEEEEEEEEEEEEECCCCCEE--EECCCCCEEEECCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHCC
T ss_conf 8999997657745861664236--63123543576897767985489899999789999999999985148
No 137
>>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens} (A:)
Probab=33.19 E-value=32 Score=15.02 Aligned_cols=43 Identities=12% Similarity=-0.047 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 5899999999679998999999999985168888989999999
Q gi|254780553|r 159 FAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLA 201 (207)
Q Consensus 159 ~~~d~~~AL~~LGy~~~ea~~ai~~i~~~~~~~~~~eelIk~a 201 (207)
...|...+|.++|+++.++...+..+..+.....+.+|.++..
T Consensus 32 ~~~El~~~l~~~g~~~~~i~~~~~~~D~d~dG~I~~~EF~~~~ 74 (111)
T 2kgr_A 32 TGPQARTILMQSSLPQAQLASIWNLSDIDQDGKLTAEEFILAM 74 (111)
T ss_dssp EHHHHHHHHHTTCCCHHHHHHHHHHHCSSCCSEEEHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEECHHHHHHHH
T ss_conf 2999999999839899999999988636999839699999999
No 138
>>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01} (A:135-180,A:275-329,A:567-673)
Probab=31.54 E-value=34 Score=14.84 Aligned_cols=27 Identities=15% Similarity=0.274 Sum_probs=17.4
Q ss_pred CCCHHHHHHHHHCCCHHHHHHCCCCCH
Q ss_conf 578999999985156687510457116
Q gi|254780553|r 92 RITATELVESIILQNSKVIAQIPGISM 118 (207)
Q Consensus 92 ~l~~~~l~~aI~~~D~~~L~~vpGIGk 118 (207)
+++...|.+.+..+=...|+++||||.
T Consensus 14 ~~~~~~l~~y~~~~~~~~l~r~~gvg~ 40 (208)
T 2v50_A 14 SMTKEDLSNYIVSNIQDPLSRTKGVGD 40 (208)
T ss_dssp TSCHHHHHHHHHHHTHHHHHTSTTEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 979999999999999999846999489
No 139
>>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} (A:)
Probab=30.61 E-value=35 Score=14.74 Aligned_cols=41 Identities=10% Similarity=-0.016 Sum_probs=32.1
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 99999999679998999999999985168888989999999
Q gi|254780553|r 161 INAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLA 201 (207)
Q Consensus 161 ~d~~~AL~~LGy~~~ea~~ai~~i~~~~~~~~~~eelIk~a 201 (207)
.|...+|.++|+++.++...+..+..+.....+.++.+...
T Consensus 31 ~El~~~l~~~~~~~~~~~~~~~~~D~~~dg~I~~~eF~~~~ 71 (99)
T 1qjt_A 31 LDAAAFLKKSGLPDLILGKIWDLADTDGKGVLSKQEFFVAL 71 (99)
T ss_dssp HHHHHHHHTSSSCHHHHHHHHHHHCCSSSSSCCSHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf 99999999818759999999997278999918899999999
No 140
>>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A (A:1-96,A:300-320)
Probab=29.37 E-value=34 Score=14.86 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=23.6
Q ss_pred HHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9999999851566875104571167999999997422211
Q gi|254780553|r 95 ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134 (207)
Q Consensus 95 ~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~K~~~ 134 (207)
+++|=......| ||..||++|+-+|+.++.+
T Consensus 37 lEeLEe~LI~aD---------vGv~tt~~Ii~~lr~r~kk 67 (117)
T 1zu4_A 37 FEELEDVLIQTD---------MGMKMVLKVSNLVRKKTKR 67 (117)
T ss_dssp HHHHHHHHHHTT---------CCHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCC---------CCHHHHHHHHHHHHHHHCC
T ss_conf 999999999828---------9899999999999999714
No 141
>>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} (B:)
Probab=29.15 E-value=37 Score=14.58 Aligned_cols=50 Identities=12% Similarity=0.157 Sum_probs=28.1
Q ss_pred HCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 0051011244315789999999851566875104571167999999997422
Q gi|254780553|r 80 GVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131 (207)
Q Consensus 80 GIGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~K 131 (207)
+..+++. ..|.......+-+- .+-...-|.++||+|+|+.+.|.--|+..
T Consensus 15 ~Ls~R~~-N~L~~~gI~ti~dL-~~~s~~dLl~i~n~G~kSl~EI~~~L~~~ 64 (73)
T 1z3e_B 15 DLSVRSY-NCLKRAGINTVQEL-ANKTEEDMMKVRNLGRKSLEEVKAKLEEL 64 (73)
T ss_dssp CCBHHHH-HHHHHTTCCBHHHH-HTSCHHHHHTSTTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHH-HHHHHCCCCCHHHH-HHCCHHHHHHCCCCCHHHHHHHHHHHHHC
T ss_conf 5889999-99988389479999-87799999758897660599999999985
No 142
>>1pq4_A Periplasmic binding protein component of AN ABC type zinc uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} (A:189-270)
Probab=28.91 E-value=27 Score=15.48 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=35.0
Q ss_pred HHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999985156687510457116799999999742221101
Q gi|254780553|r 95 ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136 (207)
Q Consensus 95 ~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~K~~~~~ 136 (207)
..++++.|.+.+++.+-.-|...+|+|+.|.-|+.-|+.-++
T Consensus 38 i~~l~~~ik~~~i~~if~e~~~~~k~~~~ia~etg~~~~~ld 79 (82)
T 1pq4_A 38 LKQLIDTAKENNLTMVFGETQFSTKSSEAIAAEIGAGVELLD 79 (82)
T ss_dssp HHHHHHHHHTTTCCEEEEETTSCCHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEEEC
T ss_conf 999999999749988997289991999999998099879878
No 143
>>1h9m_A MODG, molybdenum-binding-protein; molybdate homeostasis; 1.65A {Azotobacter vinelandii} (A:66-137)
Probab=28.67 E-value=38 Score=14.53 Aligned_cols=47 Identities=15% Similarity=0.230 Sum_probs=37.3
Q ss_pred CEEEEEEEEEECC----EEEEEE-CCEEEEEECCHHHHHHCC-CCCCEEEEEE
Q ss_conf 2589999996099----799985-883238970868898502-4798499999
Q gi|254780553|r 3 GKIKGNIEGLYED----YVLIDV-QGVCYIIYCPIRTLSCLG-KIGDFCTLFV 49 (207)
Q Consensus 3 ~~i~G~i~~~~~~----~ivi~v-~GvGY~i~vs~~~~~~l~-~~g~~v~l~~ 49 (207)
..+.|+|..+.++ .+.+++ +|.-....++......|. +.|+++...+
T Consensus 17 N~l~g~V~~i~~~~~~~~V~l~~~~g~~l~A~IT~~s~~~L~L~~G~~V~a~i 69 (72)
T 1h9m_A 17 NILTGTVKTIETGAVNAEVTLALQGGTEITSMVTKEAVAELGLKPGASASAVI 69 (72)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTSCEEEEEEEHHHHHHTTCCTTCEEEEEE
T ss_pred EEEEEEEEEEEECCCCEEEEEEECCCCEEEEEECHHHHHHCCCCCCCEEEEEE
T ss_conf 07779999999899848999994999799999889999777999999999999
No 144
>>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis} (A:190-271)
Probab=28.07 E-value=23 Score=16.05 Aligned_cols=42 Identities=26% Similarity=0.171 Sum_probs=35.3
Q ss_pred CHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 899999998515668751045711679999999974222110
Q gi|254780553|r 94 TATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135 (207)
Q Consensus 94 ~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~K~~~~ 135 (207)
+..++++.|..++++.+-.-|....|+|+.|.-++.-|+..+
T Consensus 38 ~i~~l~~~ik~~~i~~if~e~~~~~k~~~~ia~~~g~~v~~l 79 (82)
T 2o1e_A 38 SLAKLKTYAKEHNVKVIYFEEIASSKVADTLASEIGAKTEVL 79 (82)
T ss_dssp HHHHHHHHTTSSCCCEEECSSCCCHHHHHHHHHHTCCEEECC
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCEEEE
T ss_conf 799999876525886899948889499999999719976554
No 145
>>2awn_A Maltose/maltodextrin import ATP-binding protein MALK; ATP-binding cassette, transport protein; HET: ADP; 2.30A {Escherichia coli K12} (A:237-288,A:350-381)
Probab=28.05 E-value=39 Score=14.45 Aligned_cols=54 Identities=13% Similarity=0.180 Sum_probs=40.4
Q ss_pred CEEEEEEEEEECCEEEEEE-CCEEEEEECCHHHHHHCCCCCCEEEEEEE-----EEECCCCE
Q ss_conf 2589999996099799985-88323897086889850247984999999-----99738841
Q gi|254780553|r 3 GKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVE-----THMRQDQI 58 (207)
Q Consensus 3 ~~i~G~i~~~~~~~ivi~v-~GvGY~i~vs~~~~~~l~~~g~~v~l~~~-----~~vrEd~~ 58 (207)
.+|.|+|.....+.+.|+. +|-+..+..+..... ...|+.|+|=|- +..|||..
T Consensus 4 NFLpgtV~~~~g~~v~V~L~~g~~~~i~lp~~~~~--~~~G~~VtLGIRPE~~~~~~~~~~~ 63 (84)
T 2awn_A 4 NFLPVKVTATAIDQVQVELPMPNRQQVWLPVESRD--VQVGANMSLGIRPEERCHLFREDGT 63 (84)
T ss_dssp EEEEEEEEECCTTCEEEECSSTTCCEEEECBCCTT--CCTTCEEEEEECGGGGCEEECTTSB
T ss_pred HEEEEEEECCCCCEEEEEEECCCCCEEEECCCCCC--CCCCCEEEEEECHHHHEEEECCCCC
T ss_conf 16999998122440479984488844651033355--6899879999972144899799984
No 146
>>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae TIGR4} (A:1-64)
Probab=27.23 E-value=40 Score=14.36 Aligned_cols=49 Identities=20% Similarity=0.238 Sum_probs=40.2
Q ss_pred EEEEEEEEEECCEEEEEECCEEEEEECCHHHHHHCCCCCCEEEEEEEEEECCC
Q ss_conf 58999999609979998588323897086889850247984999999997388
Q gi|254780553|r 4 KIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 (207)
Q Consensus 4 ~i~G~i~~~~~~~ivi~v~GvGY~i~vs~~~~~~l~~~g~~v~l~~~~~vrEd 56 (207)
-+.|+|++-++.+.-+...|+-|++-=+.. -.++|+.|+=|+|......
T Consensus 9 vi~g~V~DENd~~yFvQ~dG~Tf~L~K~E~----~~~iGd~V~GF~Yen~~~~ 57 (64)
T 3go5_A 9 FIVGLIIDENDRFYFVQKDGQTYALAKEEG----QHTVGDTVKGFAYTDXKQK 57 (64)
T ss_dssp EEEEEEEEECSSEEEEEETTEEEEEEGGGC----CCCTTSEEEEEEEECTTSC
T ss_pred EEEEEEEEEECCEEEEECCCEEEEEECCCC----CCCCCCEEEEEEEECCCCC
T ss_conf 899999997087399942998999502006----6779989999999988888
No 147
>>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} (A:433-550)
Probab=27.04 E-value=41 Score=14.34 Aligned_cols=41 Identities=10% Similarity=-0.052 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 58999999996799989999999999851688889899999
Q gi|254780553|r 159 FAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIR 199 (207)
Q Consensus 159 ~~~d~~~AL~~LGy~~~ea~~ai~~i~~~~~~~~~~eelIk 199 (207)
..+|+..+|..+|+++.++...+..+..+.....+.+|.+.
T Consensus 43 s~~el~~~l~~~~l~~~~~~~i~~~~D~d~dG~I~~~EF~~ 83 (118)
T 2qpt_A 43 SGSKAKTWMVGTKLPNSVLGRIWKLSDVDRDGMLDDEEFAL 83 (118)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHHCSSCSSSEEHHHHHH
T ss_pred CHHHHHHHHHHCCCCHHHHHHHCHHHHCCCCCCCCHHHHHH
T ss_conf 38999999997499878997633186569989968999999
No 148
>>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens} (A:1-81)
Probab=26.85 E-value=41 Score=14.32 Aligned_cols=29 Identities=7% Similarity=-0.075 Sum_probs=24.0
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHC
Q ss_conf 89999999967999899999999998516
Q gi|254780553|r 160 AINAISALVNLGYGQDQATTAVVSVLKKE 188 (207)
Q Consensus 160 ~~d~~~AL~~LGy~~~ea~~ai~~i~~~~ 188 (207)
..|...+|.++|+++.++...+..+..+.
T Consensus 46 ~~el~~~l~~~~~~~~e~~~i~~~~D~d~ 74 (81)
T 2pmy_A 46 REEFRALCTELRVRPADAEAVFQRLDADR 74 (81)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 57899998872113489999999837889
No 149
>>3hh8_A Metal ABC transporter substrate-binding lipoprotein; metal binding, cell membrane, copper, copper transport, ION transport; 1.87A {Streptococcus pyogenes serotype M1} PDB: 1psz_A (A:180-294)
Probab=26.25 E-value=42 Score=14.25 Aligned_cols=45 Identities=7% Similarity=0.014 Sum_probs=38.4
Q ss_pred CHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 899999998515668751045711679999999974222110113
Q gi|254780553|r 94 TATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSV 138 (207)
Q Consensus 94 ~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~K~~~~~~~ 138 (207)
...++++.|...+++.+-.-|..+.|+|++|.-++.-++..+...
T Consensus 41 ~i~~l~~~ik~~~i~~if~e~~~~~~~~~~ia~~~~~~~~~l~pl 85 (115)
T 3hh8_A 41 QISSLIEKLKVIKPSALFVESSVDRRPMETVSKDSGIPIYSEIFT 85 (115)
T ss_dssp HHHHHHHHHHHSCCSCEEEETTSCSHHHHHHHHHHCCCEEEEECS
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCEECCCCC
T ss_conf 999999997605875899738899399999999809976411465
No 150
>>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} (A:1-202)
Probab=26.22 E-value=42 Score=14.24 Aligned_cols=33 Identities=15% Similarity=0.095 Sum_probs=27.6
Q ss_pred HHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 999999985156687510457116799999999
Q gi|254780553|r 95 ATELVESIILQNSKVIAQIPGISMKIASRIMTE 127 (207)
Q Consensus 95 ~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~E 127 (207)
.+.+.+++.++..-.+..-||+||-+--+-+.+
T Consensus 21 l~~l~~~l~~~~~v~i~G~~G~GKTsL~~~~~~ 53 (202)
T 2qen_A 21 SRKLEESLENYPLTLLLGIRRVGKSSLLRAFLN 53 (202)
T ss_dssp HHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 999999985399799981999989999999999
No 151
>>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} (A:)
Probab=26.18 E-value=42 Score=14.24 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHHCCCC-HHHHHHHHHH
Q ss_conf 1589999999967999-8999999999
Q gi|254780553|r 158 SFAINAISALVNLGYG-QDQATTAVVS 183 (207)
Q Consensus 158 ~~~~d~~~AL~~LGy~-~~ea~~ai~~ 183 (207)
....+.++.|+.+||. +...++|+..
T Consensus 27 ~~~~~~l~~L~~MGF~d~~~~~~AL~~ 53 (74)
T 1vej_A 27 GRYQQELEELKALGFANRDANLQALVA 53 (74)
T ss_dssp TTSHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 899999999999489978999999999
No 152
>>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} (A:185-235)
Probab=25.99 E-value=31 Score=15.15 Aligned_cols=11 Identities=45% Similarity=0.848 Sum_probs=9.5
Q ss_pred CCCCHHHHHHH
Q ss_conf 57116799999
Q gi|254780553|r 114 PGISMKIASRI 124 (207)
Q Consensus 114 pGIGkKtA~rI 124 (207)
||||+=+++|+
T Consensus 1 PGiG~i~~~kL 11 (51)
T 3bq0_A 1 PGIGSVLARRL 11 (51)
T ss_dssp TTCCHHHHHHH
T ss_pred CCCCHHHHHHH
T ss_conf 29633334554
No 153
>>2kld_A Polycystin-2; PC2, PKD2, calcium binding domain, EF hand, cytosolic, calcium, coiled coil, disease mutation, glycoprotein, ION transport; NMR {Homo sapiens} PDB: 2kle_A (A:)
Probab=25.94 E-value=43 Score=14.21 Aligned_cols=62 Identities=10% Similarity=-0.040 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 11679999999974222110113344323333344555565315899999999679998999999999985
Q gi|254780553|r 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLK 186 (207)
Q Consensus 116 IGkKtA~rIi~ELk~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~AL~~LGy~~~ea~~ai~~i~~ 186 (207)
+=||...+++.-|+=|-......... .......-..+|..+||...||+..++..+...-..
T Consensus 30 ~iKkgy~k~l~KLklKK~~v~diqk~---------l~~~~~~~~~ee~r~aLk~~g~~d~ei~~~Fskyd~ 91 (123)
T 2kld_A 30 LIRKGYHKALVKLKLKKNTVDDISES---------LRQGGGKLNFDELRQDLKGKGHTDAEIEAIFTKYDQ 91 (123)
T ss_dssp ---------------------CCSCS---------STTTTTCEEHHHHHHHTTTCCSSHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHH---------HHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCC
T ss_conf 99999999999986123554079999---------757544589799999999855438999999988703
No 154
>>1d8b_A SGS1 RECQ helicase; five helices, three-helical bundle flanked by two helices, DNA binding protein; NMR {Saccharomyces cerevisiae} (A:)
Probab=25.06 E-value=44 Score=14.10 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=18.1
Q ss_pred HCCCHHHHHHCCCCCHHHHHH
Q ss_conf 515668751045711679999
Q gi|254780553|r 103 ILQNSKVIAQIPGISMKIASR 123 (207)
Q Consensus 103 ~~~D~~~L~~vpGIGkKtA~r 123 (207)
.-.+...|.+++|+|++.++|
T Consensus 43 ~P~t~~eL~~i~G~~~~k~~~ 63 (81)
T 1d8b_A 43 LPMNDSAFATLGTVEDKYRRR 63 (81)
T ss_dssp CCCSHHHHGGGSCCCHHHHHH
T ss_pred CCCCHHHHHCCCCCCHHHHHH
T ss_conf 899999981799999999999
No 155
>>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae} (A:177-261)
Probab=24.49 E-value=19 Score=16.55 Aligned_cols=44 Identities=20% Similarity=0.138 Sum_probs=36.7
Q ss_pred CHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 89999999851566875104571167999999997422211011
Q gi|254780553|r 94 TATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137 (207)
Q Consensus 94 ~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~K~~~~~~ 137 (207)
...++++.|...+++.+-.-|...+|+|++|.-|+.-|+..++.
T Consensus 38 ~i~~~~~~ik~~~i~~If~e~~~~~k~~~~ia~e~g~~~~~ldp 81 (85)
T 3cx3_A 38 QLTEIQEFVKTYKVKTIFTESNASSKVAETLVKSTGVGLKTLNP 81 (85)
T ss_dssp HHHHHHHHHHHTTCCCEEECSSSCCHHHHHHHSSSSCCEEECCC
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECC
T ss_conf 89999987524675599984889919999999980998688577
No 156
>>3i1n_R 50S ribosomal protein L21; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_R 2aw4_R 2awb_R 1vs6_R 2i2v_R 2j28_R 2i2t_R* 2qao_R* 2qba_R* 2qbc_R* 2qbe_R 2qbg_R 2qbi_R* 2qbk_R* 2qov_R 2qox_R 2qoz_R* 2qp1_R* 2rdo_R 2vhm_R ... (R:)
Probab=24.06 E-value=30 Score=15.20 Aligned_cols=50 Identities=10% Similarity=0.008 Sum_probs=37.2
Q ss_pred EEEEEECCEEEEEECCHHHH-HHCC-CCCCEEEEEEEEEECCCCEEEEEEEC
Q ss_conf 79998588323897086889-8502-47984999999997388418999706
Q gi|254780553|r 16 YVLIDVQGVCYIIYCPIRTL-SCLG-KIGDFCTLFVETHMRQDQIRLFGFLS 65 (207)
Q Consensus 16 ~ivi~v~GvGY~i~vs~~~~-~~l~-~~g~~v~l~~~~~vrEd~~~LyGF~~ 65 (207)
|+|++++|-=|.|..-.-.. ..++ +.|+.+.|..-+.+..++.++.|-+.
T Consensus 2 yAIi~~ggkQykV~~Gd~i~v~~l~~~~Gd~i~l~~Vl~v~~~~~~~iG~P~ 53 (103)
T 3i1n_R 2 YAVFQSGGKQHRVSEGQTVRLEKLDIATGETVEFAEVLMIANGEEVKIGVPF 53 (103)
T ss_dssp EEEECCSSSCCEEETTCCEEESCCCSCTTCEEEECCEEEEESSSCEECSSSS
T ss_pred EEEEEECCEEEEECCCCEEEEECCCCCCCCCEEHHHEEEECCCCCEEECCCC
T ss_conf 8999979999999389999996467788870882550480279817855975
No 157
>>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} (A:1-177)
Probab=23.59 E-value=47 Score=13.92 Aligned_cols=34 Identities=15% Similarity=0.232 Sum_probs=25.9
Q ss_pred HHHHHHHHHCCCH---HHHHHCCCCCHHHHHHHHHHH
Q ss_conf 9999999851566---875104571167999999997
Q gi|254780553|r 95 ATELVESIILQNS---KVIAQIPGISMKIASRIMTEL 128 (207)
Q Consensus 95 ~~~l~~aI~~~D~---~~L~~vpGIGkKtA~rIi~EL 128 (207)
.+++.+++..+.. -.|..-||+||.+.-|.+...
T Consensus 25 ~~~l~~~i~~~~~~~~~Ll~GppG~GKT~~A~~la~~ 61 (177)
T 1jr3_A 25 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 (177)
T ss_dssp HHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999999986997723765799998799999999999
No 158
>>1gnt_A HCP, hybrid cluster protein; oxidoreductase, aerobic desulfovibrio vulgaris; HET: FSO; 1.25A {Desulfovibrio vulgaris} (A:1-222)
Probab=23.54 E-value=47 Score=13.92 Aligned_cols=36 Identities=11% Similarity=0.281 Sum_probs=32.4
Q ss_pred HHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 967999899999999998516888898999999999
Q gi|254780553|r 168 VNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 (207)
Q Consensus 168 ~~LGy~~~ea~~ai~~i~~~~~~~~~~eelIk~aLk 203 (207)
..|||...++.+.+.+.+.......+.+++|..+|+
T Consensus 166 ~~lg~~d~ei~~f~~~aL~~~~~~~~~~~~~~l~l~ 201 (222)
T 1gnt_A 166 AVLGFRKTEIDEFMLEALASTTKDLSVDEMVALVMK 201 (222)
T ss_dssp HHTTCCCHHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 874654105899999999971898657899999998
No 159
>>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} (A:1-168)
Probab=23.36 E-value=48 Score=13.89 Aligned_cols=37 Identities=14% Similarity=0.073 Sum_probs=26.4
Q ss_pred CHHHHHHHHHCC--CHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 899999998515--6687510457116799999999742
Q gi|254780553|r 94 TATELVESIILQ--NSKVIAQIPGISMKIASRIMTELKG 130 (207)
Q Consensus 94 ~~~~l~~aI~~~--D~~~L~~vpGIGkKtA~rIi~ELk~ 130 (207)
..+.|.++|.++ ..-.|..-||+||.+.-+.+..--+
T Consensus 33 ~~~~l~~~i~~~~~~~~Ll~GppG~GKT~~a~~ia~~~~ 71 (168)
T 1iqp_A 33 IVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF 71 (168)
T ss_dssp HHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999999999779998798889799999999999999976
No 160
>>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, ssogg, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus} (A:1-28,A:102-142)
Probab=23.32 E-value=25 Score=15.76 Aligned_cols=11 Identities=45% Similarity=0.588 Sum_probs=3.6
Q ss_pred HHCCCCCHHHH
Q ss_conf 10457116799
Q gi|254780553|r 111 AQIPGISMKIA 121 (207)
Q Consensus 111 ~~vpGIGkKtA 121 (207)
..+.|+|-|-|
T Consensus 47 vniKGiGyKEA 57 (69)
T 3fhg_A 47 LNIKGIGMQEA 57 (69)
T ss_dssp TTSTTCCHHHH
T ss_pred HHCCCCHHHHH
T ss_conf 96758539999
No 161
>>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} (A:)
Probab=23.11 E-value=48 Score=13.86 Aligned_cols=42 Identities=10% Similarity=-0.077 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 589999999967999899999999998516888898999999
Q gi|254780553|r 159 FAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRL 200 (207)
Q Consensus 159 ~~~d~~~AL~~LGy~~~ea~~ai~~i~~~~~~~~~~eelIk~ 200 (207)
...+...+|..||+++.+.+..+..+..+.....+.+|.+..
T Consensus 32 ~~~el~~~l~~lg~~~~~~~~i~~~~D~d~~G~I~f~EF~~~ 73 (106)
T 1eh2_A 32 SGDKVKPVLLNSKLPVDILGRVWELSDIDHDGMLDRDEFAVA 73 (106)
T ss_dssp BHHHHHHHHHTTTCCHHHHHHHHHHHCSSCSSBCCHHHHHHH
T ss_pred EHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEECHHHHHHH
T ss_conf 199999999864898999999999838999981839999999
No 162
>>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} (A:1-92,A:293-302)
Probab=22.33 E-value=50 Score=13.76 Aligned_cols=30 Identities=27% Similarity=0.484 Sum_probs=21.0
Q ss_pred HHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 999999985156687510457116799999999742221
Q gi|254780553|r 95 ATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAI 133 (207)
Q Consensus 95 ~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~K~~ 133 (207)
+++|=......| ||..||++|+-+|+.++.
T Consensus 33 leeLEe~LI~aD---------vGv~tt~~Ii~~lk~~~~ 62 (102)
T 3b9q_A 33 LDELEEALLVSD---------FGPKITVRIVERLREDIM 62 (102)
T ss_dssp HHHHHHHHHHTT---------CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---------CCHHHHHHHHHHHHHHHH
T ss_conf 999999999758---------987999999999998875
No 163
>>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli} (A:1-166)
Probab=21.80 E-value=51 Score=13.69 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=27.0
Q ss_pred HHHHHHHHHCCCH---HHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 9999999851566---8751045711679999999974
Q gi|254780553|r 95 ATELVESIILQNS---KVIAQIPGISMKIASRIMTELK 129 (207)
Q Consensus 95 ~~~l~~aI~~~D~---~~L~~vpGIGkKtA~rIi~ELk 129 (207)
.+.|.+++.++.. =.|..-||.||.+..|.+..--
T Consensus 11 ~~~L~~~~~~~~~~~~iLl~GppGtGKt~lA~~lA~~l 48 (166)
T 1a5t_A 11 FEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYL 48 (166)
T ss_dssp HHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99999999859967258468999977999999999997
No 164
>>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} (A:)
Probab=21.76 E-value=38 Score=14.52 Aligned_cols=19 Identities=16% Similarity=0.394 Sum_probs=14.2
Q ss_pred HHHHHCCCCCHHHHHHHHH
Q ss_conf 8751045711679999999
Q gi|254780553|r 108 KVIAQIPGISMKIASRIMT 126 (207)
Q Consensus 108 ~~L~~vpGIGkKtA~rIi~ 126 (207)
+..+.+||||+..+.|+.-
T Consensus 18 K~V~~l~GIg~~lg~~L~~ 36 (89)
T 1ci4_A 18 KPVGSLAGIGEVLGKKLEE 36 (89)
T ss_dssp CCGGGSTTCCHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHH
T ss_conf 9645168863899889998
No 165
>>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} (A:258-298,A:366-472)
Probab=21.56 E-value=32 Score=15.00 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=23.8
Q ss_pred HHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHH
Q ss_conf 9850100051011244315789999999851566875104571167
Q gi|254780553|r 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 (207)
Q Consensus 74 ~Li~V~GIGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkK 119 (207)
+|+-.|||||+.-|+-++ +..+.-.||||+.
T Consensus 7 ~lL~~SGIGp~~~L~~~g---------------I~~~~~lp~VG~n 37 (148)
T 1ju2_A 7 QLLLLSGVGPESYLSSLN---------------IPVVLSHPYVGQF 37 (148)
T ss_dssp HHHHHTTEECHHHHHHTT---------------CCCSEECTTTTEE
T ss_pred HHHHHCCCCCCHHHHHCC---------------CCEEECCCCCCCC
T ss_conf 899864788826777449---------------9648437774665
No 166
>>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} (A:1-160)
Probab=20.89 E-value=53 Score=13.57 Aligned_cols=38 Identities=13% Similarity=0.126 Sum_probs=26.8
Q ss_pred HHHHHHHHCCC--HHHHHHCCCCCHHHHHHHHHHH-HHHHH
Q ss_conf 99999985156--6875104571167999999997-42221
Q gi|254780553|r 96 TELVESIILQN--SKVIAQIPGISMKIASRIMTEL-KGKAI 133 (207)
Q Consensus 96 ~~l~~aI~~~D--~~~L~~vpGIGkKtA~rIi~EL-k~K~~ 133 (207)
+.|.+++.++- .-.|..-||.||.+.-|++..- .....
T Consensus 27 ~~l~~~i~~~~~~~~Ll~GppGtGKT~~a~~la~~l~~~~~ 67 (160)
T 2chg_A 27 QRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENW 67 (160)
T ss_dssp HHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 99999997699885998889998677899988888752566
No 167
>>2w1o_A 60S acidic ribosomal protein P2; ribonucleoprotein, ribosome, translation, dimerization, phosphoprotein; NMR {Homo sapiens} (A:)
Probab=20.53 E-value=54 Score=13.52 Aligned_cols=44 Identities=14% Similarity=0.182 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHCCCCHH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
Q ss_conf 58999999996799989--99999999985168888989999999997459
Q gi|254780553|r 159 FAINAISALVNLGYGQD--QATTAVVSVLKKEKNIADDSQIIRLALRAISC 207 (207)
Q Consensus 159 ~~~d~~~AL~~LGy~~~--ea~~ai~~i~~~~~~~~~~eelIk~aLk~Ls~ 207 (207)
...|+..-|.+-|-.-. .+...+.++ +..+.+|+|.....+|+|
T Consensus 20 s~~dvkkIL~svG~e~d~~~l~~lv~~l-----~gK~i~elI~~G~~Klas 65 (70)
T 2w1o_A 20 SAKDIKKILDSVGIEADDDRLNKVISEL-----NGKNIEDVIAQGIGKLAS 65 (70)
T ss_dssp CHHHHHHHHHHHTCCCCSHHHHHHHHHH-----HHSCHHHHHHHHSGGGSC
T ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHH-----CCCCHHHHHHHHHHHHCC
T ss_conf 9999999999848863699999999995-----699899999964898704
No 168
>>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal binding protein; HET: PG4; 1.80A {Thermococcus kodakarensis} (A:)
Probab=20.51 E-value=54 Score=13.52 Aligned_cols=47 Identities=15% Similarity=0.245 Sum_probs=36.9
Q ss_pred EEEEEEEEEECCEEEEEECCEEEEEECCHHHHHHCCCCCCEEEEEEEEEE
Q ss_conf 58999999609979998588323897086889850247984999999997
Q gi|254780553|r 4 KIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM 53 (207)
Q Consensus 4 ~i~G~i~~~~~~~ivi~v~GvGY~i~vs~~~~~~l~~~g~~v~l~~~~~v 53 (207)
.+-|+|.++.++...+|.+|+--+|.+.. .... +.|+.|.+|.=+.+
T Consensus 4 ~iP~kVv~i~~~~A~vd~~G~~r~v~l~l--v~e~-~vGD~VLvh~G~Ai 50 (75)
T 2z1c_A 4 AVPGKVIEVNGPVAVVDFGGVKREVRLDL--MPDT-KPGDWVIVHTGFAI 50 (75)
T ss_dssp SCCEEEEEEETTEEEEEETTEEEEEECTT--STTC-CTTCEEEEETTEEE
T ss_pred CCCEEEEEECCCEEEEEECCEEEEEEEEE--ECCC-CCCCEEEEEECHHH
T ss_conf 44469999879989998099499999986--0889-98989999407365
No 169
>>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle protein; HET: ADP; 2.30A {Argopecten irradians} (A:79-466,A:598-699)
Probab=20.28 E-value=55 Score=13.49 Aligned_cols=29 Identities=17% Similarity=0.120 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHHHCCCCHHH---HHHHHHHHH
Q ss_conf 31589999999967999899---999999998
Q gi|254780553|r 157 PSFAINAISALVNLGYGQDQ---ATTAVVSVL 185 (207)
Q Consensus 157 ~~~~~d~~~AL~~LGy~~~e---a~~ai~~i~ 185 (207)
.....+...||..|||++.+ +.+.+..++
T Consensus 247 ~~~f~~l~~al~~lGis~~e~~~I~~iLAaIL 278 (490)
T 1kk8_A 247 VEEFKLCDEAFDILGFTKEEKQSMFKCTASIL 278 (490)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999772999999999999888876
Done!