HHsearch results for GI: 254780553 and protein with PDBid: 1cuk_A
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination, helicase; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=100.00 E-value=0 Score=416.51 Aligned_cols=202 Identities=28% Similarity=0.425 Sum_probs=181.2
Q ss_pred CCCEEEEEEEEEECCEEEEEECCEEEEEECCHHHHHHCCCCCCEEEEEEEEEECCCCEEEEEEECHHHHHHHHHHHHHHH
Q ss_conf 93258999999609979998588323897086889850247984999999997388418999706779999999850100
Q gi|254780553|r 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQG 80 (207)
Q Consensus 1 MI~~i~G~i~~~~~~~ivi~v~GvGY~i~vs~~~~~~l~~~g~~v~l~~~~~vrEd~~~LyGF~~~~Er~~F~~Li~V~G 80 (207)
||+||+|++.+++++++|||||||||+|++|.++++.+++.|++++||||++||||+++||||.+.+||++|++|++|||
T Consensus 1 MI~~l~G~i~~~~~~~vvl~v~GvGY~V~v~~~~~~~l~~~g~~v~l~~~~~vrEd~~~LyGF~~~~Er~lF~~Li~VsG 80 (203)
T 1cuk_A 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIKTNG 80 (203)
T ss_dssp CCCEEEEEEEEEETTEEEEEETTEEEEEECCHHHHTTCCCTTSEEEEEEEEEEETTEEEEEEESSHHHHHHHHHHHHSSS
T ss_pred CCCEEEEEEEEEECCEEEEEECCEEEEEEECHHHHHHHHCCCCEEEEEEEEEEECCCCEEEECCCHHHHHHHHHHHCCCC
T ss_conf 96569999999719989999899889999078999961348984999999996167746886194699999999857688
Q ss_pred CCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 05101124431578999999985156687510457116799999999742221101133443233333445555653158
Q gi|254780553|r 81 VGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA 160 (207)
Q Consensus 81 IGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (207)
||||+||+|||+++|++|++||.++|.+.|+++||||||||+||++|||||+.++.....................++..
T Consensus 81 IGPK~AL~ILs~~~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIilELkdK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (203)
T 1cuk_A 81 VGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAE 160 (203)
T ss_dssp CCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHHHHGGGCCSTTTCC-------------CCHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 57566888861279899999987189988606998779999999999999987630122465422123577776666058
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 999999996799989999999999851688889899999999974
Q gi|254780553|r 161 INAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 (207)
Q Consensus 161 ~d~~~AL~~LGy~~~ea~~ai~~i~~~~~~~~~~eelIk~aLk~L 205 (207)
.|+++||++|||++++|++++.++.. +..++|++||.|||..
T Consensus 161 ~d~~~AL~~LGy~~~ea~~ai~~~~~---~~~~~e~lik~aLk~~ 202 (203)
T 1cuk_A 161 QEAVARLVALGYKPQEASRMVSKIAR---PDASSETLIREALRAA 202 (203)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHSCC---SSCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHC---CCCCHHHHHHHHHHHH
T ss_conf 99999999879999999999998616---8999999999999971