HHsearch results for GI: 254780553 and protein with PDBid: 1cuk_A

>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination, helicase; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=100.00  E-value=0  Score=416.51  Aligned_cols=202  Identities=28%  Similarity=0.425  Sum_probs=181.2

Q ss_pred             CCCEEEEEEEEEECCEEEEEECCEEEEEECCHHHHHHCCCCCCEEEEEEEEEECCCCEEEEEEECHHHHHHHHHHHHHHH
Q ss_conf             93258999999609979998588323897086889850247984999999997388418999706779999999850100
Q gi|254780553|r    1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQG   80 (207)
Q Consensus         1 MI~~i~G~i~~~~~~~ivi~v~GvGY~i~vs~~~~~~l~~~g~~v~l~~~~~vrEd~~~LyGF~~~~Er~~F~~Li~V~G   80 (207)
                      ||+||+|++.+++++++|||||||||+|++|.++++.+++.|++++||||++||||+++||||.+.+||++|++|++|||
T Consensus         1 MI~~l~G~i~~~~~~~vvl~v~GvGY~V~v~~~~~~~l~~~g~~v~l~~~~~vrEd~~~LyGF~~~~Er~lF~~Li~VsG   80 (203)
T 1cuk_A            1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIKTNG   80 (203)
T ss_dssp             CCCEEEEEEEEEETTEEEEEETTEEEEEECCHHHHTTCCCTTSEEEEEEEEEEETTEEEEEEESSHHHHHHHHHHHHSSS
T ss_pred             CCCEEEEEEEEEECCEEEEEECCEEEEEEECHHHHHHHHCCCCEEEEEEEEEEECCCCEEEECCCHHHHHHHHHHHCCCC
T ss_conf             96569999999719989999899889999078999961348984999999996167746886194699999999857688


Q ss_pred             CCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             05101124431578999999985156687510457116799999999742221101133443233333445555653158
Q gi|254780553|r   81 VGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA  160 (207)
Q Consensus        81 IGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (207)
                      ||||+||+|||+++|++|++||.++|.+.|+++||||||||+||++|||||+.++.....................++..
T Consensus        81 IGPK~AL~ILs~~~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIilELkdK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (203)
T 1cuk_A           81 VGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAE  160 (203)
T ss_dssp             CCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHHHHGGGCCSTTTCC-------------CCHHH
T ss_pred             CCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf             57566888861279899999987189988606998779999999999999987630122465422123577776666058


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf             999999996799989999999999851688889899999999974
Q gi|254780553|r  161 INAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI  205 (207)
Q Consensus       161 ~d~~~AL~~LGy~~~ea~~ai~~i~~~~~~~~~~eelIk~aLk~L  205 (207)
                      .|+++||++|||++++|++++.++..   +..++|++||.|||..
T Consensus       161 ~d~~~AL~~LGy~~~ea~~ai~~~~~---~~~~~e~lik~aLk~~  202 (203)
T 1cuk_A          161 QEAVARLVALGYKPQEASRMVSKIAR---PDASSETLIREALRAA  202 (203)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHSCC---SSCCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHC---CCCCHHHHHHHHHHHH
T ss_conf             99999999879999999999998616---8999999999999971