HHSEARCH alignment of GI: 254780553 and SCOP domain: d1a77a1

Alignment
>d1a77a1 a.60.7.1 (A:209-316) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=95.15  E-value=0.031  Score=32.50  Aligned_cols=21  Identities=24%  Similarity=0.403  Sum_probs=16.2

Q ss_pred             HHHHCCCHHHHHHHCCCCHHH
Q ss_conf             010005101124431578999
Q gi|254780553|r   77 SVQGVGARVAMGVLSRITATE   97 (207)
Q Consensus        77 ~V~GIGpK~AL~iLs~l~~~~   97 (207)
                      +|.|||||+|+.++..++.-+
T Consensus        21 GV~GIGpktA~klIk~~g~ie   41 (108)
T d1a77a1          21 GVKGIGFKRAYELVRSGVAKD   41 (108)
T ss_dssp             CSTTCCHHHHHHHHHTTCHHH
T ss_pred             CCCCCCHHHHHHHHHHCCCHH
T ss_conf             899917899999999838899


SCOP domain information

class: All alpha proteins
fold: SAM domain-like
superfamily: 5' to 3' exonuclease, C-terminal subdomain
family: 5' to 3' exonuclease, C-terminal subdomain
domain: Flap endonuclease-1 (Fen-1 nuclease)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]