HHSEARCH alignment of GI: 254780553 and SCOP domain: d1cuka2

Alignment

Probab=99.89  E-value=5.1e-24  Score=177.74  Aligned_cols=73  Identities=27%  Similarity=0.522  Sum_probs=70.1

Q ss_pred             CHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             6779999999850100051011244315789999999851566875104571167999999997422211011
Q gi|254780553|r   65 SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS  137 (207)
Q Consensus        65 ~~~Er~~F~~Li~V~GIGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~K~~~~~~  137 (207)
                      +++||+||++|++|+|||||+||+|||+++++++++||.++|.+.|+++||||+|||+||++||+||+.++..
T Consensus         1 d~~Er~~F~~Li~V~GIGpK~Al~iLs~~~~~~l~~aI~~~D~~~L~~vpGIG~KtA~rIi~eLk~K~~~~~~   73 (78)
T d1cuka2           1 NKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGLHG   73 (78)
T ss_dssp             SHHHHHHHHHHHHSSSCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHHHHGGGCCS
T ss_pred             CHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             9889999999876688019999999984899999999980688871229997899999999999999985015

SCOP domain information

class: All alpha proteins
fold: SAM domain-like
superfamily: RuvA domain 2-like
family: DNA helicase RuvA subunit, middle domain
domain: DNA helicase RuvA subunit, middle domain
species: Escherichia coli [TaxId: 562]