HHSEARCH alignment of GI: 254780553 and SCOP domain: d2a1ja1

Alignment

Probab=96.85  E-value=0.0003  Score=45.97  Aligned_cols=54  Identities=13%  Similarity=0.245  Sum_probs=45.1

Q ss_pred             HHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf             9985010005101124431578999999985156687510457116799999999742
Q gi|254780553|r   73 MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG  130 (207)
Q Consensus        73 ~~Li~V~GIGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~  130 (207)
                      .+|.++.|||||.+-.+++.+..   ++.|.+-+..-|..++| |++.|++|.--|..
T Consensus         3 d~L~~iPGIg~~~~~~Ll~~f~S---i~~l~~As~~eL~~v~G-~~~~A~~i~~f~~~   56 (62)
T d2a1ja1           3 DFLLKMPGVNAKNCRSLMHHVKN---IAELAALSQDELTSILG-NAANAKQLYDFIHT   56 (62)
T ss_dssp             HHHHTSTTCCHHHHHHHHHHCSS---HHHHHTCCHHHHHHHHS-CHHHHHHHHHHHHC
T ss_pred             HHHHCCCCCCHHHHHHHHHHHCC---HHHHHHCCHHHHHHCCC-CHHHHHHHHHHHHH
T ss_conf             68766999999999999998524---99998699999977859-58999999999810

SCOP domain information

class: All alpha proteins
fold: SAM domain-like
superfamily: RuvA domain 2-like
family: Hef domain-like
domain: DNA repair endonuclease XPF
species: Human (Homo sapiens) [TaxId: 9606]