HHSEARCH alignment of GI: 254780553 and SCOP domain: d2i1qa1

Alignment

Probab=97.53  E-value=2.8e-05  Score=52.78  Aligned_cols=55  Identities=22%  Similarity=0.310  Sum_probs=46.3

Q ss_pred             HHHHHHCCCHHHHHHHCC-CCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf             850100051011244315-7899999998515668751045711679999999974222
Q gi|254780553|r   75 LQSVQGVGARVAMGVLSR-ITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA  132 (207)
Q Consensus        75 Li~V~GIGpK~AL~iLs~-l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~K~  132 (207)
                      |..|.||||+.|=.++.. +..   +..|.+.|...|.++||||+++|++|+-..++.+
T Consensus         1 L~~IpGIG~~~a~~L~~~G~~t---v~~l~~a~~eeL~~i~Gi~~~~A~~i~~~ar~~~   56 (60)
T d2i1qa1           1 LTDLPGVGPSTAEKLVEAGYID---FMKIATATVGELTDIEGISEKAAAKMIMGARDLC   56 (60)
T ss_dssp             CTTSTTCCHHHHHHHHHHTCCS---HHHHHTCCHHHHHTSTTCCHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHCCCCC---HHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHC
T ss_conf             9788898999999999836999---9999859999998778989999999999999871

SCOP domain information

class: All alpha proteins
fold: SAM domain-like
superfamily: Rad51 N-terminal domain-like
family: DNA repair protein Rad51, N-terminal domain
domain: DNA repair protein Rad51, N-terminal domain
species: Archaeon Methanococcus voltae [TaxId: 2188]