Query gi|254780553|ref|YP_003064966.1| Holliday junction DNA helicase RuvA [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 207
No_of_seqs 117 out of 1856
Neff 6.5
Searched_HMMs 13730
Date Wed Jun 1 09:38:45 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780553.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1cuka2 a.60.2.1 (A:65-142) DN 99.9 5.1E-24 3.7E-28 177.7 7.6 73 65-137 1-73 (78)
2 d1bvsa2 a.60.2.1 (A:64-134) DN 99.9 5.5E-24 4E-28 177.5 6.1 70 65-134 1-70 (71)
3 d1ixra1 a.60.2.1 (A:63-135) DN 99.9 1.2E-23 8.7E-28 175.3 6.5 71 64-134 1-71 (73)
4 d1cuka3 b.40.4.2 (A:1-64) DNA 99.7 4.5E-18 3.2E-22 138.1 10.4 64 1-64 1-64 (64)
5 d1ixra2 b.40.4.2 (A:1-62) DNA 99.7 1.5E-17 1.1E-21 134.7 8.1 62 1-63 1-62 (62)
6 d1bvsa3 b.40.4.2 (A:1-63) DNA 99.7 8.5E-18 6.2E-22 136.3 5.8 63 1-64 1-63 (63)
7 d1cuka1 a.5.1.1 (A:156-203) DN 98.4 1.5E-07 1.1E-11 67.9 5.4 46 157-205 2-47 (48)
8 d2bgwa1 a.60.2.5 (A:160-229) D 98.1 9.6E-07 7E-11 62.6 4.1 66 63-132 4-69 (70)
9 d1x2ia1 a.60.2.5 (A:2-69) ATP- 97.9 5E-06 3.7E-10 57.8 4.5 64 64-131 2-65 (68)
10 d1kfta_ a.60.2.3 (A:) Excinucl 97.8 4.9E-06 3.6E-10 57.9 3.0 53 74-129 3-55 (56)
11 d1pzna1 a.60.4.1 (A:35-95) DNA 97.7 6.2E-06 4.5E-10 57.2 2.4 56 74-132 2-58 (61)
12 d1ixsa_ a.5.1.1 (A:) DNA helic 97.6 4.9E-05 3.6E-09 51.2 6.1 46 159-205 4-49 (50)
13 d2i1qa1 a.60.4.1 (A:5-64) DNA 97.5 2.8E-05 2.1E-09 52.8 3.6 55 75-132 1-56 (60)
14 d2a1jb1 a.60.2.5 (B:219-296) D 97.4 5.9E-05 4.3E-09 50.7 4.2 61 69-132 15-75 (78)
15 d1dgsa1 a.60.2.2 (A:401-581) N 97.0 0.00077 5.6E-08 43.2 6.4 73 55-130 75-161 (181)
16 d2a1ja1 a.60.2.5 (A:837-898) D 96.9 0.0003 2.2E-08 46.0 3.0 54 73-130 3-56 (62)
17 d1vdda_ e.49.1.1 (A:) Recombin 96.6 0.0005 3.7E-08 44.5 2.7 22 107-128 11-32 (199)
18 d1bvsa1 a.5.1.1 (A:148-203) DN 96.3 0.00081 5.9E-08 43.1 2.3 46 159-205 3-52 (56)
19 d1rxwa1 a.60.7.1 (A:220-324) F 95.6 0.0087 6.3E-07 36.2 4.8 28 77-104 20-48 (105)
20 d1a77a1 a.60.7.1 (A:209-316) F 95.1 0.031 2.3E-06 32.5 6.5 21 77-97 21-41 (108)
21 d2edua1 a.60.2.7 (A:8-98) KIF2 95.0 0.015 1.1E-06 34.7 4.6 33 96-128 21-53 (91)
22 d2axtu1 a.60.12.2 (U:37-134) P 94.8 0.0064 4.6E-07 37.1 2.1 45 73-126 27-71 (98)
23 d1szpa1 a.60.4.1 (A:81-144) DN 94.5 0.0071 5.2E-07 36.8 1.9 53 76-130 6-58 (64)
24 d3bzka1 a.60.2.6 (A:474-563) T 94.1 0.025 1.8E-06 33.1 3.9 32 103-135 30-61 (90)
25 d2noha1 a.96.1.3 (A:136-325) 8 93.3 0.073 5.3E-06 30.0 5.2 76 54-130 37-125 (190)
26 d2duya1 a.60.2.7 (A:11-75) Unc 93.0 0.043 3.1E-06 31.6 3.7 42 74-124 18-59 (65)
27 d2i1qa1 a.60.4.1 (A:5-64) DNA 92.9 0.044 3.2E-06 31.5 3.6 51 110-185 1-53 (60)
28 d1ul1x1 a.60.7.1 (X:218-357) F 92.6 0.023 1.6E-06 33.4 1.7 94 77-188 20-115 (140)
29 d2edua1 a.60.2.7 (A:8-98) KIF2 92.4 0.057 4.2E-06 30.7 3.6 49 72-126 32-81 (91)
30 d1ul1x1 a.60.7.1 (X:218-357) F 92.3 0.21 1.6E-05 26.9 6.5 36 94-130 2-38 (140)
31 d2p6ra2 a.289.1.2 (A:489-686) 92.2 0.018 1.3E-06 34.2 0.8 21 104-124 140-160 (198)
32 d2axtu1 a.60.12.2 (U:37-134) P 91.9 0.032 2.3E-06 32.5 1.8 24 102-125 21-44 (98)
33 d1b43a1 a.60.7.1 (A:220-339) F 91.6 0.19 1.4E-05 27.3 5.5 83 77-186 21-104 (120)
34 d1b22a_ a.60.4.1 (A:) DNA repa 91.5 0.018 1.3E-06 34.1 0.2 54 75-130 12-65 (70)
35 d1rxwa1 a.60.7.1 (A:220-324) F 91.3 0.031 2.2E-06 32.5 1.2 37 93-130 1-38 (105)
36 d1orna_ a.96.1.1 (A:) Endonucl 90.3 0.082 5.9E-06 29.7 2.6 51 78-130 77-132 (214)
37 d1a77a1 a.60.7.1 (A:209-316) F 90.3 0.057 4.2E-06 30.7 1.8 93 93-186 1-102 (108)
38 d3bzka1 a.60.2.6 (A:474-563) T 90.2 0.073 5.3E-06 30.0 2.3 49 72-126 34-83 (90)
39 d1keaa_ a.96.1.2 (A:) Thymine- 90.0 0.088 6.4E-06 29.5 2.6 51 78-130 80-135 (217)
40 d1xo1a1 a.60.7.1 (A:186-290) T 90.0 0.094 6.9E-06 29.3 2.8 23 107-129 18-40 (105)
41 d2duya1 a.60.2.7 (A:11-75) Unc 90.0 0.078 5.7E-06 29.8 2.3 25 102-126 11-35 (65)
42 d1ngna_ a.96.1.2 (A:) Mismatch 89.9 0.18 1.3E-05 27.4 4.2 52 74-131 65-116 (144)
43 d1kg2a_ a.96.1.2 (A:) Catalyti 89.9 0.1 7.5E-06 29.0 2.9 29 103-131 104-132 (224)
44 d2a1ja1 a.60.2.5 (A:837-898) D 89.2 0.088 6.4E-06 29.5 2.1 23 108-130 3-25 (62)
45 d1rrqa1 a.96.1.2 (A:9-229) Cat 89.1 0.11 8.3E-06 28.8 2.6 51 78-130 75-129 (221)
46 d1mpga1 a.96.1.3 (A:100-282) 3 89.1 0.18 1.3E-05 27.4 3.6 65 56-127 49-127 (183)
47 d2abka_ a.96.1.1 (A:) Endonucl 89.0 0.11 8.3E-06 28.8 2.6 52 77-130 75-131 (211)
48 d1kfta_ a.60.2.3 (A:) Excinucl 88.8 0.068 5E-06 30.2 1.3 23 108-130 2-24 (56)
49 d1pu6a_ a.96.1.5 (A:) 3-Methyl 88.8 0.12 9E-06 28.5 2.6 25 104-128 116-140 (217)
50 d2fmpa2 a.60.12.1 (A:92-148) D 88.5 0.11 8.3E-06 28.8 2.3 22 105-126 4-25 (57)
51 d1jmsa3 a.60.12.1 (A:243-302) 88.2 0.12 8.7E-06 28.6 2.3 20 107-126 7-26 (60)
52 d2i5ha1 e.71.1.1 (A:16-195) Hy 88.2 0.15 1.1E-05 28.1 2.7 23 108-130 115-137 (180)
53 d2bcqa2 a.60.12.1 (A:329-385) 87.9 0.13 9.4E-06 28.4 2.3 20 107-126 7-26 (57)
54 d1pzna1 a.60.4.1 (A:35-95) DNA 87.5 0.073 5.3E-06 30.0 0.8 53 109-185 2-55 (61)
55 d2bgwa1 a.60.2.5 (A:160-229) D 87.5 0.15 1.1E-05 28.1 2.3 23 108-130 13-35 (70)
56 d2fmpa1 a.60.6.1 (A:10-91) DNA 87.0 0.15 1.1E-05 27.9 2.2 38 84-128 31-68 (82)
57 d1xo1a1 a.60.7.1 (A:186-290) T 85.8 0.097 7.1E-06 29.2 0.7 25 77-101 23-48 (105)
58 d2bcqa1 a.60.6.1 (A:252-327) D 85.5 0.21 1.5E-05 27.0 2.3 38 84-128 29-66 (76)
59 d2csba3 a.60.2.4 (A:410-464) T 85.5 0.39 2.8E-05 25.2 3.7 48 74-121 3-51 (55)
60 d1keaa_ a.96.1.2 (A:) Thymine- 84.8 0.15 1.1E-05 28.1 1.2 21 72-92 112-132 (217)
61 d1x2ia1 a.60.2.5 (A:2-69) ATP- 84.7 0.23 1.7E-05 26.7 2.2 25 106-130 8-32 (68)
62 d1bvsa2 a.60.2.1 (A:64-134) DN 84.7 0.24 1.8E-05 26.6 2.3 55 108-184 9-64 (71)
63 d1cuka2 a.60.2.1 (A:65-142) DN 84.0 0.26 1.9E-05 26.3 2.2 60 108-189 9-69 (78)
64 d1b43a1 a.60.7.1 (A:220-339) F 83.8 0.12 8.9E-06 28.6 0.4 36 94-130 2-39 (120)
65 d1cmwa1 a.60.7.1 (A:174-289) 5 83.8 0.12 8.6E-06 28.6 0.4 19 77-95 22-40 (116)
66 d1kg2a_ a.96.1.2 (A:) Catalyti 83.5 0.18 1.3E-05 27.5 1.2 20 72-91 108-127 (224)
67 d2a1jb1 a.60.2.5 (B:219-296) D 83.0 0.36 2.6E-05 25.4 2.6 26 105-130 16-41 (78)
68 d1rrqa1 a.96.1.2 (A:9-229) Cat 82.9 0.19 1.4E-05 27.2 1.2 21 72-92 106-126 (221)
69 d1orna_ a.96.1.1 (A:) Endonucl 82.8 0.19 1.4E-05 27.3 1.1 20 72-91 109-128 (214)
70 d1ixra1 a.60.2.1 (A:63-135) DN 82.3 0.33 2.4E-05 25.7 2.2 59 108-188 10-69 (73)
71 d1jmsa1 a.60.6.1 (A:148-242) T 82.3 0.31 2.3E-05 25.9 2.0 37 83-126 44-80 (95)
72 d1wgna_ a.5.2.1 (A:) Ubiquitin 81.1 0.48 3.5E-05 24.6 2.6 28 157-184 16-43 (63)
73 d1jmsa3 a.60.12.1 (A:243-302) 80.3 0.14 1E-05 28.2 -0.3 30 70-99 5-36 (60)
74 d2abka_ a.96.1.1 (A:) Endonucl 79.3 0.047 3.5E-06 31.3 -3.0 20 72-91 108-127 (211)
75 d2g3qa1 a.5.2.1 (A:1339-1381) 79.3 1 7.6E-05 22.4 3.9 24 161-184 5-28 (43)
76 d1oqya1 a.5.2.1 (A:160-200) DN 79.1 0.81 5.9E-05 23.1 3.3 26 159-184 3-28 (41)
77 d1wiva_ a.5.2.1 (A:) Ubiquitin 79.1 1.3 9.3E-05 21.8 4.3 27 158-184 27-53 (73)
78 d1dgsa1 a.60.2.2 (A:401-581) N 76.4 0.34 2.5E-05 25.6 0.7 50 73-128 75-127 (181)
79 d1cmwa1 a.60.7.1 (A:174-289) 5 75.9 0.081 5.9E-06 29.7 -2.6 31 100-130 10-40 (116)
80 d2uubm1 a.156.1.1 (M:2-126) Ri 75.5 0.59 4.3E-05 24.0 1.7 22 108-129 16-37 (125)
81 d2gy9m1 a.156.1.1 (M:1-114) Ri 74.5 0.92 6.7E-05 22.7 2.5 22 108-129 16-37 (114)
82 d1pu6a_ a.96.1.5 (A:) 3-Methyl 73.0 0.22 1.6E-05 26.8 -0.9 16 74-89 121-136 (217)
83 d1vg5a_ a.5.2.1 (A:) Rhomboid 72.4 1.8 0.00013 20.8 3.6 26 159-184 28-53 (73)
84 d2bcqa2 a.60.12.1 (A:329-385) 71.7 0.31 2.3E-05 25.8 -0.4 31 70-100 5-37 (57)
85 d1zeta2 e.8.1.7 (A:27-299) DNA 71.4 0.8 5.9E-05 23.1 1.6 43 80-124 172-224 (273)
86 d1im4a_ e.8.1.7 (A:) DinB homo 71.4 0.88 6.4E-05 22.8 1.8 42 80-124 148-199 (209)
87 d1veka_ a.5.2.1 (A:) Ubiquitin 71.3 2.6 0.00019 19.7 4.2 25 159-183 28-52 (84)
88 d2fmpa2 a.60.12.1 (A:92-148) D 70.5 0.34 2.5E-05 25.6 -0.4 29 71-99 5-35 (57)
89 d1wjia_ a.5.2.1 (A:) Tudor dom 69.4 2.3 0.00017 20.1 3.6 25 159-183 8-32 (63)
90 d1t94a2 e.8.1.7 (A:75-407) DNA 68.9 1.1 7.8E-05 22.3 1.8 57 65-124 221-291 (333)
91 d1jiha2 e.8.1.7 (A:1-389) DNA 68.6 0.99 7.2E-05 22.5 1.6 48 80-128 263-320 (389)
92 d1gm5a2 b.40.4.9 (A:106-285) R 64.3 1.2 8.8E-05 21.9 1.4 16 171-186 158-173 (180)
93 d2crna1 a.5.2.1 (A:8-58) Suppr 61.3 2.1 0.00015 20.3 2.1 23 162-184 4-26 (51)
94 d1jx4a2 e.8.1.7 (A:1-240) DinB 60.4 1.9 0.00014 20.5 1.8 43 79-124 142-194 (240)
95 d2cpwa1 a.5.2.1 (A:8-58) Cbl-i 60.1 2.5 0.00018 19.8 2.3 22 162-183 14-35 (51)
96 d1whca_ a.5.2.1 (A:) UBA/UBX 3 57.8 2.5 0.00018 19.9 2.0 24 161-184 10-33 (64)
97 d1doqa_ a.60.3.1 (A:) C-termin 56.4 2.8 0.0002 19.5 2.1 43 87-130 20-62 (69)
98 d1fr3a_ b.40.6.1 (A:) Molybdat 54.0 6.3 0.00046 17.1 7.0 47 3-49 7-58 (67)
99 d1z96a1 a.5.2.1 (A:295-332) UB 48.0 6.6 0.00048 17.0 2.9 22 163-184 5-26 (38)
100 d1x2ga1 d.224.1.3 (A:247-337) 45.9 4.8 0.00035 17.9 1.9 47 157-203 41-91 (91)
101 d2e1fa1 a.60.8.1 (A:1142-1235) 45.6 5.4 0.00039 17.6 2.1 55 67-125 11-72 (94)
102 d1wuda1 a.60.8.1 (A:530-606) H 45.1 5.5 0.0004 17.5 2.1 57 68-128 3-66 (77)
103 d1sxjb2 c.37.1.20 (B:7-230) Re 39.5 8.6 0.00063 16.2 2.4 36 96-131 25-63 (224)
104 d1oqya2 a.5.2.1 (A:317-360) DN 38.9 8.5 0.00062 16.3 2.3 20 161-180 5-24 (44)
105 d1iqpa2 c.37.1.20 (A:2-232) Re 38.4 8 0.00058 16.5 2.1 18 109-126 49-66 (231)
106 d2qy9a1 a.24.13.1 (A:201-284) 37.5 8.7 0.00063 16.2 2.2 20 114-133 38-57 (84)
107 d1h9ma2 b.40.6.2 (A:74-141) Cy 35.0 12 0.00089 15.2 7.0 47 3-49 6-58 (68)
108 d1hh2p1 b.40.4.5 (P:127-198) S 34.8 12 0.0009 15.2 6.4 49 4-56 11-63 (72)
109 d2je6i1 b.40.4.5 (I:66-152) S1 32.0 14 0.001 14.9 7.4 51 4-56 10-71 (87)
110 d1lb2b_ a.60.3.1 (B:) C-termin 31.7 12 0.00088 15.2 2.1 41 89-130 20-60 (72)
111 d1gpea1 c.3.1.2 (A:1-328,A:525 31.4 4.3 0.00031 18.2 -0.2 36 74-132 300-336 (391)
112 d1guta_ b.40.6.1 (A:) Molybdat 30.2 15 0.0011 14.7 6.3 47 3-49 6-58 (67)
113 d1z3eb1 a.60.3.1 (B:245-311) C 29.2 12 0.0009 15.2 1.8 39 89-128 21-59 (67)
114 d1wrka1 a.39.1.5 (A:4-85) Trop 28.5 16 0.0011 14.5 4.7 46 160-205 35-82 (82)
115 d1okkd1 a.24.13.1 (D:21-78) Si 28.4 13 0.00098 14.9 1.9 19 114-132 22-40 (58)
116 d1ju2a1 c.3.1.2 (A:1-293,A:464 27.4 5.6 0.00041 17.5 -0.2 33 74-121 264-296 (351)
117 d1ci4a_ a.60.5.1 (A:) Barrier- 26.8 11 0.00079 15.6 1.2 19 108-126 18-36 (89)
118 d1sxjc2 c.37.1.20 (C:12-238) R 23.4 19 0.0014 13.9 2.4 18 109-126 39-56 (227)
119 d2ba0a1 b.40.4.5 (A:53-135) S1 23.3 19 0.0014 13.9 6.4 51 4-56 8-67 (83)
120 d1toaa_ c.92.2.2 (A:) Periplas 22.9 20 0.0014 13.8 4.3 38 96-133 200-237 (277)
121 d1vmaa1 a.24.13.1 (A:1-81) Sig 22.6 20 0.0014 13.8 1.9 15 116-130 48-62 (81)
122 d1rypd_ d.153.1.4 (D:) Proteas 21.9 21 0.0015 13.7 3.3 38 168-205 160-197 (241)
123 d1h9ma1 b.40.6.2 (A:1-73) Cyto 20.5 22 0.0016 13.5 7.0 48 3-50 7-60 (73)
124 d1ttea1 a.5.2.1 (A:161-215) Ub 20.2 22 0.0016 13.5 3.9 28 158-185 7-34 (55)
No 1
>d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]}
Probab=99.89 E-value=5.1e-24 Score=177.74 Aligned_cols=73 Identities=27% Similarity=0.522 Sum_probs=70.1
Q ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 6779999999850100051011244315789999999851566875104571167999999997422211011
Q gi|254780553|r 65 SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137 (207)
Q Consensus 65 ~~~Er~~F~~Li~V~GIGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~K~~~~~~ 137 (207)
+++||+||++|++|+|||||+||+|||+++++++++||.++|.+.|+++||||+|||+||++||+||+.++..
T Consensus 1 d~~Er~~F~~Li~V~GIGpK~Al~iLs~~~~~~l~~aI~~~D~~~L~~vpGIG~KtA~rIi~eLk~K~~~~~~ 73 (78)
T d1cuka2 1 NKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGLHG 73 (78)
T ss_dssp SHHHHHHHHHHHHSSSCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHHHHGGGCCS
T ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 9889999999876688019999999984899999999980688871229997899999999999999985015
No 2
>d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle domain {Mycobacterium leprae [TaxId: 1769]}
Probab=99.89 E-value=5.5e-24 Score=177.50 Aligned_cols=70 Identities=33% Similarity=0.476 Sum_probs=68.0
Q ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 6779999999850100051011244315789999999851566875104571167999999997422211
Q gi|254780553|r 65 SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134 (207)
Q Consensus 65 ~~~Er~~F~~Li~V~GIGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~K~~~ 134 (207)
+++||++|++|++|+|||||+||+|||+++++++++||.++|.+.|+++||||+|||+||++|||||+.+
T Consensus 1 d~eEr~~F~~Li~V~GIGpK~Al~iLs~~~~~~l~~aI~~~D~~~L~~vpGIG~KtA~rIi~eLk~Kl~~ 70 (71)
T d1bvsa2 1 DAENRDLFLALLSVSGVGPRLAMATLAVHDAAALRQALADSDVASLTRVPGIGRRGAERIVLELADKVGP 70 (71)
T ss_dssp SHHHHHHHHHHHTSSSCCHHHHHHHHHHSCHHHHHHHTTTTCHHHHHTSTTCCHHHHHHHHHHSSGGGSC
T ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 9789999999855488179999999984999999999981798884319997799999999999874136
No 3
>d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]}
Probab=99.88 E-value=1.2e-23 Score=175.28 Aligned_cols=71 Identities=31% Similarity=0.521 Sum_probs=68.8
Q ss_pred ECHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 06779999999850100051011244315789999999851566875104571167999999997422211
Q gi|254780553|r 64 LSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134 (207)
Q Consensus 64 ~~~~Er~~F~~Li~V~GIGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~K~~~ 134 (207)
.+++||++|+.|++|+|||||+||+|||+++++++++||.++|.+.|+++||||+|||+||++|||||+.+
T Consensus 1 pd~~Er~lF~~Li~V~GIGpk~Al~iLs~~~~~~l~~aI~~~D~~~L~~vpGIG~KtA~rIi~eLk~K~~~ 71 (73)
T d1ixra1 1 PDEENLALFELLLSVSGVGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERIALELKGKVPP 71 (73)
T ss_dssp SSHHHHHHHHHHHSSSCCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSTTCCHHHHHHHHHHHTTTSCS
T ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 98899999999865588079999999987368899999980689986529997799999999999862368
No 4
>d1cuka3 b.40.4.2 (A:1-64) DNA helicase RuvA subunit, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.75 E-value=4.5e-18 Score=138.13 Aligned_cols=64 Identities=33% Similarity=0.511 Sum_probs=62.9
Q ss_pred CCCEEEEEEEEEECCEEEEEECCEEEEEECCHHHHHHCCCCCCEEEEEEEEEECCCCEEEEEEE
Q ss_conf 9325899999960997999858832389708688985024798499999999738841899970
Q gi|254780553|r 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64 (207)
Q Consensus 1 MI~~i~G~i~~~~~~~ivi~v~GvGY~i~vs~~~~~~l~~~g~~v~l~~~~~vrEd~~~LyGF~ 64 (207)
||+||+|++.++++++++|+||||||+|++|.++++.+++.|+++++|||++||||+++||||.
T Consensus 1 MI~~l~G~l~~~~~~~ivi~v~GvGY~v~v~~~~~~~l~~~g~~v~l~t~~~vrED~~~LyGFs 64 (64)
T d1cuka3 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFN 64 (64)
T ss_dssp CCCEEEEEEEEEETTEEEEEETTEEEEEECCHHHHTTCCCTTSEEEEEEEEEEETTEEEEEEES
T ss_pred CEEEEEEEEEEECCCEEEEEECCEEEEEEECHHHHHHCCCCCCEEEEEEEEEEEECCCEEECCC
T ss_conf 9019999999976998999989999999988189752567998999999999900898935619
No 5
>d1ixra2 b.40.4.2 (A:1-62) DNA helicase RuvA subunit, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=99.70 E-value=1.5e-17 Score=134.71 Aligned_cols=62 Identities=19% Similarity=0.359 Sum_probs=60.5
Q ss_pred CCCEEEEEEEEEECCEEEEEECCEEEEEECCHHHHHHCCCCCCEEEEEEEEEECCCCEEEEEE
Q ss_conf 932589999996099799985883238970868898502479849999999973884189997
Q gi|254780553|r 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGF 63 (207)
Q Consensus 1 MI~~i~G~i~~~~~~~ivi~v~GvGY~i~vs~~~~~~l~~~g~~v~l~~~~~vrEd~~~LyGF 63 (207)
||+||+|++.++++++++||||||||+|++|.++++.+ +.|+++++|||++||||+++||||
T Consensus 1 MI~~i~G~i~~~~~~~ivi~~~GvGY~v~v~~~~~~~l-~~g~~v~l~t~~~vrED~~~LyGF 62 (62)
T d1ixra2 1 MIRYLRGLVLKKEAGGFVLLAGGVGFFLQAPTPFLQAL-EEGKEVGVHTHLLLKEEGLSLYGF 62 (62)
T ss_dssp CCCEEEEEEEEECSSEEEEECSSEEEEEECCHHHHHHC-CTTSEEEEEECCCCCSSCCCEEEE
T ss_pred CEEEEEEEEEEECCCEEEEEECCEEEEEEECHHHHHHC-CCCCEEEEEEEEEEECCCCCCCCC
T ss_conf 93699999999749989999799899999899999626-699979999999990387872389
No 6
>d1bvsa3 b.40.4.2 (A:1-63) DNA helicase RuvA subunit, N-terminal domain {Mycobacterium leprae [TaxId: 1769]}
Probab=99.69 E-value=8.5e-18 Score=136.26 Aligned_cols=63 Identities=25% Similarity=0.457 Sum_probs=61.2
Q ss_pred CCCEEEEEEEEEECCEEEEEECCEEEEEECCHHHHHHCCCCCCEEEEEEEEEECCCCEEEEEEE
Q ss_conf 9325899999960997999858832389708688985024798499999999738841899970
Q gi|254780553|r 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64 (207)
Q Consensus 1 MI~~i~G~i~~~~~~~ivi~v~GvGY~i~vs~~~~~~l~~~g~~v~l~~~~~vrEd~~~LyGF~ 64 (207)
||+||+|++.++++++++||||||||+|++|.++++.++ .|++++||||++||||+++||||.
T Consensus 1 MI~~i~G~i~~~~~~~ivi~v~GvGY~v~v~~~~~~~l~-~g~~v~l~t~~~vrED~~~LyGFs 63 (63)
T d1bvsa3 1 MIFSVRGEVLEVALDHAVIEAAGIGYRVNATPSALATLN-QGSQARLVTAMVVREDSMTLYGFS 63 (63)
T ss_dssp CEEEECEEEEEECSSCEEEEETTEEECCBCCHHHHTTCC-SSCEECCCEEEEEETTEEEEEECS
T ss_pred CEEEEEEEEEEECCCEEEEEECCEEEEEEECHHHHHHCC-CCCEEEEEEEEEEECCCCEEEEEC
T ss_conf 933999999997799899997998999996879997779-999899999999921897766229
No 7
>d1cuka1 a.5.1.1 (A:156-203) DNA helicase RuvA subunit, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=98.42 E-value=1.5e-07 Score=67.87 Aligned_cols=46 Identities=33% Similarity=0.434 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 3158999999996799989999999999851688889899999999974
Q gi|254780553|r 157 PSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 (207)
Q Consensus 157 ~~~~~d~~~AL~~LGy~~~ea~~ai~~i~~~~~~~~~~eelIk~aLk~L 205 (207)
++...|+++||++|||++.++.+++.++. .+..++|++||.|||.+
T Consensus 2 n~~~~eAi~AL~~LGY~~~ea~~av~~i~---~~~~s~E~lIk~ALk~m 47 (48)
T d1cuka1 2 DDAEQEAVARLVALGYKPQEASRMVSKIA---RPDASSETLIREALRAA 47 (48)
T ss_dssp CHHHHHHHHHHHHHTCCHHHHHHHHHHSC---CSSCCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHC---CCCCCHHHHHHHHHHHH
T ss_conf 83699999999992998999999999863---79999999999999984
No 8
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]}
Probab=98.13 E-value=9.6e-07 Score=62.57 Aligned_cols=66 Identities=27% Similarity=0.370 Sum_probs=56.2
Q ss_pred EECHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 7067799999998501000510112443157899999998515668751045711679999999974222
Q gi|254780553|r 63 FLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132 (207)
Q Consensus 63 F~~~~Er~~F~~Li~V~GIGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~K~ 132 (207)
+.+.++..+| .|.++.||||++|-.+++.++. .+.+.+.+...|.+|||||+++|++|.--++.+.
T Consensus 4 ~~~~~~~~~~-~L~~IpgIG~~~a~~L~~~F~s---~~~l~~As~eeL~~v~GIG~~~A~~I~~~~~~~~ 69 (70)
T d2bgwa1 4 LSDVREWQLY-ILQSFPGIGRRTAERILERFGS---LERFFTASKAEISKVEGIGEKRAEEIKKILMTPY 69 (70)
T ss_dssp CCHHHHHHHH-HHHTSTTCCHHHHHHHHHHHSS---HHHHTTCCHHHHHHSTTCCHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHH-HHCCCCCCCHHHHHHHHHHHCC---HHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHCCC
T ss_conf 5889998999-9808999579999999998298---8999886999997579989999999999984725
No 9
>d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Probab=97.91 E-value=5e-06 Score=57.79 Aligned_cols=64 Identities=23% Similarity=0.356 Sum_probs=52.3
Q ss_pred ECHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 06779999999850100051011244315789999999851566875104571167999999997422
Q gi|254780553|r 64 LSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131 (207)
Q Consensus 64 ~~~~Er~~F~~Li~V~GIGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~K 131 (207)
.+..||..| .|.++.||||++|-.++..+.. .+.|.+.+..-|.++||||+++|+.|.--+..+
T Consensus 2 ~~~~~~~~~-~L~~I~gIG~~~a~~L~~~f~s---~~~i~~As~eeL~~i~GIG~~~A~~I~~~~~~~ 65 (68)
T d1x2ia1 2 LTLAERQRL-IVEGLPHVSATLARRLLKHFGS---VERVFTASVAELMKVEGIGEKIAKEIRRVITAP 65 (68)
T ss_dssp CCHHHHHHH-HHTTSTTCCHHHHHHHHHHHCS---HHHHHHCCHHHHTTSTTCCHHHHHHHHHHHHSC
T ss_pred CCHHHHHHH-HHCCCCCCCHHHHHHHHHHCCC---HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCH
T ss_conf 988999999-9818999689999999997499---999988589999727996999999999998465
No 10
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=97.81 E-value=4.9e-06 Score=57.86 Aligned_cols=53 Identities=28% Similarity=0.476 Sum_probs=47.2
Q ss_pred HHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 98501000510112443157899999998515668751045711679999999974
Q gi|254780553|r 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 (207)
Q Consensus 74 ~Li~V~GIGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk 129 (207)
.|.+++||||++|-.++..+.. ...|.+.+...|.++||||+++|++|.--|+
T Consensus 3 ~L~~I~gVG~~~a~~L~~~F~s---~~~i~~As~eeL~~v~GIg~~~A~~I~~~l~ 55 (56)
T d1kfta_ 3 SLETIEGVGPKRRQMLLKYMGG---LQGLRNASVEEIAKVPGISQGLAEKIFWSLK 55 (56)
T ss_dssp GGGGCTTCSSSHHHHHHHHHSC---HHHHHHCCHHHHTTSSSTTSHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHCC---HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC
T ss_conf 7535898009999999999399---9999986499998169979999999999876
No 11
>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=97.73 E-value=6.2e-06 Score=57.18 Aligned_cols=56 Identities=21% Similarity=0.337 Sum_probs=48.1
Q ss_pred HHHHHHHCCCHHHHHHHCC-CCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9850100051011244315-7899999998515668751045711679999999974222
Q gi|254780553|r 74 LLQSVQGVGARVAMGVLSR-ITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132 (207)
Q Consensus 74 ~Li~V~GIGpK~AL~iLs~-l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~K~ 132 (207)
.|.+|+||||+.|-.+++. +.. +..|.+.+...|.++||||+++|++|+-..++++
T Consensus 2 ~L~~i~GIG~~~a~~L~~~g~~s---v~~l~~a~~~eL~~i~Gi~~~~A~~i~~~ar~~~ 58 (61)
T d1pzna1 2 SIEDLPGVGPATAEKLREAGYDT---LEAIAVASPIELKEVAGISEGTALKIIQAARKAA 58 (61)
T ss_dssp CSSCCTTCCHHHHHHHHTTTCCS---HHHHHTCCHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCHHHHHHHHHHCCCC---HHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHC
T ss_conf 50217997999999999944999---9999859999997779999999999999999872
No 12
>d1ixsa_ a.5.1.1 (A:) DNA helicase RuvA subunit, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=97.65 E-value=4.9e-05 Score=51.19 Aligned_cols=46 Identities=28% Similarity=0.447 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 58999999996799989999999999851688889899999999974
Q gi|254780553|r 159 FAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 (207)
Q Consensus 159 ~~~d~~~AL~~LGy~~~ea~~ai~~i~~~~~~~~~~eelIk~aLk~L 205 (207)
..+|++.||..|||.+.+++.++.++...+|.. +.+++||.||++|
T Consensus 4 a~~eA~~AL~aLGFrE~QvRsvVaell~~nP~a-~aq~lIr~aL~~L 49 (50)
T d1ixsa_ 4 AAEEAVMALAALGFKEAQARAVVLDLLAQNPKA-RAQDLIKEALKRL 49 (50)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC-CHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHC
T ss_conf 289999999996421789999999998719542-3999999998654
No 13
>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Probab=97.53 E-value=2.8e-05 Score=52.78 Aligned_cols=55 Identities=22% Similarity=0.310 Sum_probs=46.3
Q ss_pred HHHHHHCCCHHHHHHHCC-CCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 850100051011244315-7899999998515668751045711679999999974222
Q gi|254780553|r 75 LQSVQGVGARVAMGVLSR-ITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132 (207)
Q Consensus 75 Li~V~GIGpK~AL~iLs~-l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~K~ 132 (207)
|..|.||||+.|=.++.. +.. +..|.+.|...|.++||||+++|++|+-..++.+
T Consensus 1 L~~IpGIG~~~a~~L~~~G~~t---v~~l~~a~~eeL~~i~Gi~~~~A~~i~~~ar~~~ 56 (60)
T d2i1qa1 1 LTDLPGVGPSTAEKLVEAGYID---FMKIATATVGELTDIEGISEKAAAKMIMGARDLC 56 (60)
T ss_dssp CTTSTTCCHHHHHHHHHHTCCS---HHHHHTCCHHHHHTSTTCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHCCCCC---HHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHC
T ss_conf 9788898999999999836999---9999859999998778989999999999999871
No 14
>d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.44 E-value=5.9e-05 Score=50.65 Aligned_cols=61 Identities=20% Similarity=0.266 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9999998501000510112443157899999998515668751045711679999999974222
Q gi|254780553|r 69 RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132 (207)
Q Consensus 69 r~~F~~Li~V~GIGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~K~ 132 (207)
..+...|.++.||||+.|-.+++.+.. .+.|.+.+...|..+||||.+.|++|.--+++.+
T Consensus 15 ~~~~~~L~~I~gIg~~~a~~L~~~F~s---~~~i~~A~~eeL~~i~GiG~~~A~~i~~~f~~pf 75 (78)
T d2a1jb1 15 SRVTECLTTVKSVNKTDSQTLLTTFGS---LEQLIAASREDLALCPGLGPQKARRLFDVLHEPF 75 (78)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHHHSS---HHHHHSCCHHHHHTSSSCCSHHHHHHHHHHHSCS
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999998638997599999999999398---1998855278888750533999999999980822
No 15
>d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3 {Thermus filiformis [TaxId: 276]}
Probab=97.05 E-value=0.00077 Score=43.20 Aligned_cols=73 Identities=15% Similarity=0.250 Sum_probs=49.4
Q ss_pred CCCEEEEEEECHHHHHH--------------HHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHH
Q ss_conf 88418999706779999--------------9998501000510112443157899999998515668751045711679
Q gi|254780553|r 55 QDQIRLFGFLSDLDRQW--------------FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 (207)
Q Consensus 55 Ed~~~LyGF~~~~Er~~--------------F~~Li~V~GIGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKt 120 (207)
|+-..|-||....-..+ |..=++|.+||+++|-.+.+.+.. .+.+.+.+...|.+++|||+++
T Consensus 75 ~~l~~l~~~g~ksa~nl~~~Ie~sk~~~l~r~l~aLGI~~vG~~~Ak~La~~f~s---l~~l~~as~eeL~~I~GIG~~~ 151 (181)
T d1dgsa1 75 EDLLGLERMGEKSAQNLLRQIEESKHRGLERLLYALGLPGVGEVLARNLARRFGT---MDRLLEASLEELIEVEEVGELT 151 (181)
T ss_dssp HHHHTTSSCCSTTHHHHHHHHHHGGGCCHHHHHHHTTCSSCCHHHHHHHHHTTSB---HHHHTTCCHHHHHTSTTCCHHH
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHCCCCCHHH
T ss_conf 7774366446078999999987411113899999987543447789999987620---0255412789886107827999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999742
Q gi|254780553|r 121 ASRIMTELKG 130 (207)
Q Consensus 121 A~rIi~ELk~ 130 (207)
|+.|+-=+++
T Consensus 152 A~si~~ff~~ 161 (181)
T d1dgsa1 152 ARAILETLKD 161 (181)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHCC
T ss_conf 9999999879
No 16
>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.85 E-value=0.0003 Score=45.97 Aligned_cols=54 Identities=13% Similarity=0.245 Sum_probs=45.1
Q ss_pred HHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 9985010005101124431578999999985156687510457116799999999742
Q gi|254780553|r 73 MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 (207)
Q Consensus 73 ~~Li~V~GIGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~ 130 (207)
.+|.++.|||||.+-.+++.+.. ++.|.+-+..-|..++| |++.|++|.--|..
T Consensus 3 d~L~~iPGIg~~~~~~Ll~~f~S---i~~l~~As~~eL~~v~G-~~~~A~~i~~f~~~ 56 (62)
T d2a1ja1 3 DFLLKMPGVNAKNCRSLMHHVKN---IAELAALSQDELTSILG-NAANAKQLYDFIHT 56 (62)
T ss_dssp HHHHTSTTCCHHHHHHHHHHCSS---HHHHHTCCHHHHHHHHS-CHHHHHHHHHHHHC
T ss_pred HHHHCCCCCCHHHHHHHHHHHCC---HHHHHHCCHHHHHHCCC-CHHHHHHHHHHHHH
T ss_conf 68766999999999999998524---99998699999977859-58999999999810
No 17
>d1vdda_ e.49.1.1 (A:) Recombination protein RecR {Deinococcus radiodurans [TaxId: 1299]}
Probab=96.62 E-value=0.0005 Score=44.45 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=19.6
Q ss_pred HHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 6875104571167999999997
Q gi|254780553|r 107 SKVIAQIPGISMKIASRIMTEL 128 (207)
Q Consensus 107 ~~~L~~vpGIGkKtA~rIi~EL 128 (207)
+..|+++||||+|+|+||.+.|
T Consensus 11 I~~l~kLPGIG~KsA~Rla~~L 32 (199)
T d1vdda_ 11 IRELSRLPGIGPKSAQRLAFHL 32 (199)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHH
T ss_conf 9999878998899999999999
No 18
>d1bvsa1 a.5.1.1 (A:148-203) DNA helicase RuvA subunit, C-terminal domain {Mycobacterium leprae [TaxId: 1769]}
Probab=96.33 E-value=0.00081 Score=43.07 Aligned_cols=46 Identities=33% Similarity=0.425 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHH
Q ss_conf 5899999999679998999999999985----1688889899999999974
Q gi|254780553|r 159 FAINAISALVNLGYGQDQATTAVVSVLK----KEKNIADDSQIIRLALRAI 205 (207)
Q Consensus 159 ~~~d~~~AL~~LGy~~~ea~~ai~~i~~----~~~~~~~~eelIk~aLk~L 205 (207)
..+++++||+.|||..++|+.++..+.. +.|+ .++...+|.||..|
T Consensus 3 Vr~qVvEALvGLGF~~KqAe~a~d~Vl~~~la~~p~-a~tS~aLRaALs~L 52 (56)
T d1bvsa1 3 VRGSVVEALVGLGFAAKQAEEATDQVLDGELGKDGA-VATSSALRAALSLL 52 (56)
T ss_dssp HHHHTTHHHHHHTCCHHHHHHHHHHHHHCC--------CHHHHHHTTSTTT
T ss_pred CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHH
T ss_conf 089999999835840778998776888621025886-33489999999986
No 19
>d1rxwa1 a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=95.57 E-value=0.0087 Score=36.20 Aligned_cols=28 Identities=18% Similarity=0.386 Sum_probs=20.6
Q ss_pred HHHHCCCHHHHHHHCCC-CHHHHHHHHHC
Q ss_conf 01000510112443157-89999999851
Q gi|254780553|r 77 SVQGVGARVAMGVLSRI-TATELVESIIL 104 (207)
Q Consensus 77 ~V~GIGpK~AL~iLs~l-~~~~l~~aI~~ 104 (207)
+|.|||||+|+.++..+ +.+.+.+.+..
T Consensus 20 GV~GIG~ktA~kli~~~gsle~i~~~~~~ 48 (105)
T d1rxwa1 20 GVKGVGVKKALNYIKTYGDIFRALKALKV 48 (105)
T ss_dssp CCTTCCHHHHHHHHHHHSSHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 99993789999999993998999998873
No 20
>d1a77a1 a.60.7.1 (A:209-316) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=95.15 E-value=0.031 Score=32.50 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=16.2
Q ss_pred HHHHCCCHHHHHHHCCCCHHH
Q ss_conf 010005101124431578999
Q gi|254780553|r 77 SVQGVGARVAMGVLSRITATE 97 (207)
Q Consensus 77 ~V~GIGpK~AL~iLs~l~~~~ 97 (207)
+|.|||||+|+.++..++.-+
T Consensus 21 GV~GIGpktA~klIk~~g~ie 41 (108)
T d1a77a1 21 GVKGIGFKRAYELVRSGVAKD 41 (108)
T ss_dssp CSTTCCHHHHHHHHHTTCHHH
T ss_pred CCCCCCHHHHHHHHHHCCCHH
T ss_conf 899917899999999838899
No 21
>d2edua1 a.60.2.7 (A:8-98) KIF22, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.03 E-value=0.015 Score=34.71 Aligned_cols=33 Identities=12% Similarity=0.102 Sum_probs=26.4
Q ss_pred HHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 999999851566875104571167999999997
Q gi|254780553|r 96 TELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 (207)
Q Consensus 96 ~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~EL 128 (207)
+++..-|.+.+..-|.++||||+++|++||-.-
T Consensus 21 ~~~l~~iNtAs~~eL~~lpgig~~~A~~II~yR 53 (91)
T d2edua1 21 QKILDLLNEGSARDLRSLQRIGPKKAQLIVGWR 53 (91)
T ss_dssp HHHHHHHHHSCHHHHHHSTTCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 210431556999999647898999999999999
No 22
>d2axtu1 a.60.12.2 (U:37-134) Photosystem II 12 kDa extrinsic protein PsbU {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=94.77 E-value=0.0064 Score=37.11 Aligned_cols=45 Identities=11% Similarity=0.225 Sum_probs=29.2
Q ss_pred HHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHH
Q ss_conf 998501000510112443157899999998515668751045711679999999
Q gi|254780553|r 73 MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 (207)
Q Consensus 73 ~~Li~V~GIGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ 126 (207)
..|..+.||||++|-+|... .| -....-|.+|+|||+|+.++|--
T Consensus 27 ~eL~~lpGIg~~~A~~Iv~~-gp--------f~s~edL~~V~GIg~~~~e~lk~ 71 (98)
T d2axtu1 27 AAFIQYRGLYPTLAKLIVKN-AP--------YESVEDVLNIPGLTERQKQILRE 71 (98)
T ss_dssp GGGTTSTTCTHHHHHHHHHS-CC--------CSSGGGGGGCTTCCTTHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHHHHC-CC--------CCCHHHHHHCCCCCHHHHHHHHH
T ss_conf 99987321269999999971-88--------28899996388999899999999
No 23
>d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=94.51 E-value=0.0071 Score=36.77 Aligned_cols=53 Identities=19% Similarity=0.217 Sum_probs=41.8
Q ss_pred HHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 5010005101124431578999999985156687510457116799999999742
Q gi|254780553|r 76 QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 (207)
Q Consensus 76 i~V~GIGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~ 130 (207)
+.+.||||+.+=.+-.. ... =++.|+.-..+-|..+||||.++|+||+-.-+.
T Consensus 6 L~~~Gig~~~~~kL~~a-G~~-Tve~ia~~t~~~L~~i~Gi~e~~a~KIi~~A~k 58 (64)
T d1szpa1 6 LQVNGITMADVKKLRES-GLH-TAEAVAYAPRKDLLEIKGISEAKADKLLNEAAR 58 (64)
T ss_dssp GCCTTCCHHHHHHHHTT-SCC-SHHHHHHSCSHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHC-CCC-CHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 75779999999999996-997-499998689999977679789999999999998
No 24
>d3bzka1 a.60.2.6 (A:474-563) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]}
Probab=94.05 E-value=0.025 Score=33.12 Aligned_cols=32 Identities=16% Similarity=0.337 Sum_probs=21.6
Q ss_pred HCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 515668751045711679999999974222110
Q gi|254780553|r 103 ILQNSKVIAQIPGISMKIASRIMTELKGKAISL 135 (207)
Q Consensus 103 ~~~D~~~L~~vpGIGkKtA~rIi~ELk~K~~~~ 135 (207)
..-+...|.++||||+++|++|+-. +.+...|
T Consensus 30 N~As~~~L~~lpGig~~~A~~Iv~~-R~~~G~f 61 (90)
T d3bzka1 30 NTASAALLARISGLNSTLAQNIVAH-RDANGAF 61 (90)
T ss_dssp TTCCHHHHTTSTTCCHHHHHHHHHH-HHHHCSC
T ss_pred HHCCHHHHHHCCCCCHHHHHHHHHH-HHHCCCC
T ss_conf 1398999967789899999999999-9986997
No 25
>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=93.28 E-value=0.073 Score=30.03 Aligned_cols=76 Identities=18% Similarity=0.158 Sum_probs=41.7
Q ss_pred CCCCEEEEEEECHHHHHHH--HHHHHHHHCCCHHHHHHHC-------CCCHHHHHHHHHCC----CHHHHHHCCCCCHHH
Q ss_conf 3884189997067799999--9985010005101124431-------57899999998515----668751045711679
Q gi|254780553|r 54 RQDQIRLFGFLSDLDRQWF--MLLQSVQGVGARVAMGVLS-------RITATELVESIILQ----NSKVIAQIPGISMKI 120 (207)
Q Consensus 54 rEd~~~LyGF~~~~Er~~F--~~Li~V~GIGpK~AL~iLs-------~l~~~~l~~aI~~~----D~~~L~~vpGIGkKt 120 (207)
.-|....|.|.+.++..-- +.++.-.|.|-| |-.|.. ........+.+.+. -.+.|+++||||++|
T Consensus 37 ~~~~~~~~~FP~~~~la~~~~e~~l~~~~~~~r-a~~i~~~a~~i~~~~~~~~~l~~l~~~~~~~~~~~L~~l~GIG~wT 115 (190)
T d2noha1 37 QLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYR-ARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGTQV 115 (190)
T ss_dssp EETTEEEECCCCHHHHHSTTHHHHHHHTTCTTH-HHHHHHHHHHHHHTSCSHHHHHHTTTSCHHHHHHHHTTSTTCCHHH
T ss_pred CCCCCHHHCCCCHHHHHHCCHHHHHHHCCHHHH-HHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHCCCCHHHH
T ss_conf 667502330299999987666989985634899-9999999999987301236889863799479999998767751899
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999742
Q gi|254780553|r 121 ASRIMTELKG 130 (207)
Q Consensus 121 A~rIi~ELk~ 130 (207)
|+-+++---+
T Consensus 116 A~~il~~~~~ 125 (190)
T d2noha1 116 ADCICLMALD 125 (190)
T ss_dssp HHHHHHHHSC
T ss_pred HHHHHHHHCC
T ss_conf 9999999769
No 26
>d2duya1 a.60.2.7 (A:11-75) Uncharacterized protein TTHA1967 {Thermus thermophilus [TaxId: 274]}
Probab=93.01 E-value=0.043 Score=31.57 Aligned_cols=42 Identities=17% Similarity=0.321 Sum_probs=19.2
Q ss_pred HHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHH
Q ss_conf 985010005101124431578999999985156687510457116799999
Q gi|254780553|r 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 (207)
Q Consensus 74 ~Li~V~GIGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rI 124 (207)
.|..+.|||++.|-+|+.. -+ -.+..-|.+++|||+++-++|
T Consensus 18 eL~~lpgig~~~A~~Iv~~-R~--------f~s~edL~~v~gi~~~~~~~i 59 (65)
T d2duya1 18 ELMALPGIGPVLARRIVEG-RP--------YARVEDLLKVKGIGPATLERL 59 (65)
T ss_dssp HHTTSTTCCHHHHHHHHHT-CC--------CSSGGGGGGSTTCCHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHC-CC--------CCCHHHHHHCCCCCHHHHHHH
T ss_conf 9977789899999999984-89--------899999975889899999999
No 27
>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Probab=92.90 E-value=0.044 Score=31.51 Aligned_cols=51 Identities=12% Similarity=0.367 Sum_probs=30.4
Q ss_pred HHHCCCCCHHHHHHHHHH-HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Q ss_conf 510457116799999999-742221101133443233333445555653158999999996-7999899999999998
Q gi|254780553|r 110 IAQIPGISMKIASRIMTE-LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN-LGYGQDQATTAVVSVL 185 (207)
Q Consensus 110 L~~vpGIGkKtA~rIi~E-Lk~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~AL~~-LGy~~~ea~~ai~~i~ 185 (207)
|+.+||||+++|+|+.-. ... +.++.... .+-|.. =|++++.|++.+..+.
T Consensus 1 L~~IpGIG~~~a~~L~~~G~~t-v~~l~~a~------------------------~eeL~~i~Gi~~~~A~~i~~~ar 53 (60)
T d2i1qa1 1 LTDLPGVGPSTAEKLVEAGYID-FMKIATAT------------------------VGELTDIEGISEKAAAKMIMGAR 53 (60)
T ss_dssp CTTSTTCCHHHHHHHHHHTCCS-HHHHHTCC------------------------HHHHHTSTTCCHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHCCCCC-HHHHHHCC------------------------HHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 9788898999999999836999-99998599------------------------99998778989999999999999
No 28
>d1ul1x1 a.60.7.1 (X:218-357) Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo sapiens) [TaxId: 9606]}
Probab=92.56 E-value=0.023 Score=33.45 Aligned_cols=94 Identities=12% Similarity=0.219 Sum_probs=43.1
Q ss_pred HHHHCCCHHHHHHHCCC-CHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 01000510112443157-89999999851566875104571167999999997422211011334432333334455556
Q gi|254780553|r 77 SVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS 155 (207)
Q Consensus 77 ~V~GIGpK~AL~iLs~l-~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~K~~~~~~~~~~~~~~~~~~~~~~~~ 155 (207)
+|.|||||+|+.+|..+ +.+.++..+ |.......+.. ...+.+.++ ++..+.. ........
T Consensus 20 gv~gIG~ktA~kli~~~~~le~i~~~~---~~~~~~~~~~~-~~~~~~~~~-~~~~v~~-------------~~~~~l~~ 81 (140)
T d1ul1x1 20 SIRGIGPKRAVDLIQKHKSIEEIVRRL---DPNKYPVPENW-LHKEAHQLF-LEPEVLD-------------PESVELKW 81 (140)
T ss_dssp CCTTCCHHHHHHHHHHSSSHHHHHTTC---CCTTSCCCSSC-CHHHHHHHH-HSCCCCC-------------GGGCCCCC
T ss_pred CCCCCCHHHHHHHHHHHCCHHHHHHHH---HHHCCCCCHHH-HHHHHHHHH-CCCCCCC-------------CCCCCCCC
T ss_conf 999823999999999939999999999---98432111003-368999997-6996689-------------98778775
Q ss_pred CCCHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHC
Q ss_conf 531589999999-967999899999999998516
Q gi|254780553|r 156 MPSFAINAISAL-VNLGYGQDQATTAVVSVLKKE 188 (207)
Q Consensus 156 ~~~~~~d~~~AL-~~LGy~~~ea~~ai~~i~~~~ 188 (207)
.....+++...| ..++|.+.....++..+.+..
T Consensus 82 ~~~d~~~l~~~l~~~~~f~~~~~~~~l~~l~~~~ 115 (140)
T d1ul1x1 82 SEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSR 115 (140)
T ss_dssp CCCCHHHHHHHTTTTSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 9999999999999984889999999999999886
No 29
>d2edua1 a.60.2.7 (A:8-98) KIF22, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=92.37 E-value=0.057 Score=30.74 Aligned_cols=49 Identities=18% Similarity=0.205 Sum_probs=38.2
Q ss_pred HHHHHHHHHCCCHHHHHHHCCCCHHHHHHHH-HCCCHHHHHHCCCCCHHHHHHHHH
Q ss_conf 9998501000510112443157899999998-515668751045711679999999
Q gi|254780553|r 72 FMLLQSVQGVGARVAMGVLSRITATELVESI-ILQNSKVIAQIPGISMKIASRIMT 126 (207)
Q Consensus 72 F~~Li~V~GIGpK~AL~iLs~l~~~~l~~aI-~~~D~~~L~~vpGIGkKtA~rIi~ 126 (207)
...|..++||||+.|=+|... .+.- --.+..-|.+|||||+|+.++|.-
T Consensus 32 ~~eL~~lpgig~~~A~~II~y------R~~~G~f~sledL~~V~Gi~~k~~eki~k 81 (91)
T d2edua1 32 ARDLRSLQRIGPKKAQLIVGW------RELHGPFSQVEDLERVEGITGKQMESFLK 81 (91)
T ss_dssp HHHHHHSTTCCHHHHHHHHHH------HHHHCCCSSGGGGGGSTTCCHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHH------HHHCCCCCCHHHHHCCCCCCHHHHHHHHH
T ss_conf 999964789899999999999------99859978899980088989999999998
No 30
>d1ul1x1 a.60.7.1 (X:218-357) Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo sapiens) [TaxId: 9606]}
Probab=92.31 E-value=0.21 Score=26.94 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=25.1
Q ss_pred CHHHHHHH-HHCCCHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 89999999-85156687510457116799999999742
Q gi|254780553|r 94 TATELVES-IILQNSKVIAQIPGISMKIASRIMTELKG 130 (207)
Q Consensus 94 ~~~~l~~a-I~~~D~~~L~~vpGIGkKtA~rIi~ELk~ 130 (207)
++++++.. |..| ..-+-.|||||+|||-+++-+..+
T Consensus 2 ~~~q~id~~~L~G-sD~~pgv~gIG~ktA~kli~~~~~ 38 (140)
T d1ul1x1 2 NQEQFVDLCILLG-SDYCESIRGIGPKRAVDLIQKHKS 38 (140)
T ss_dssp CHHHHHHHHHHHH-CSSSCCCTTCCHHHHHHHHHHSSS
T ss_pred CHHHHHHHHHHHC-CCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 8899999999828-778989998239999999999399
No 31
>d2p6ra2 a.289.1.2 (A:489-686) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=92.15 E-value=0.018 Score=34.16 Aligned_cols=21 Identities=14% Similarity=0.110 Sum_probs=10.7
Q ss_pred CCCHHHHHHCCCCCHHHHHHH
Q ss_conf 156687510457116799999
Q gi|254780553|r 104 LQNSKVIAQIPGISMKIASRI 124 (207)
Q Consensus 104 ~~D~~~L~~vpGIGkKtA~rI 124 (207)
..|.--|.++||||++.|.++
T Consensus 140 ~~ell~L~~i~gvgr~rAr~L 160 (198)
T d2p6ra2 140 KEELLELVRIRHIGRVRARKL 160 (198)
T ss_dssp CGGGHHHHTSTTCCHHHHHHH
T ss_pred CHHHHHHHCCCCCCHHHHHHH
T ss_conf 788886845789899999999
No 32
>d2axtu1 a.60.12.2 (U:37-134) Photosystem II 12 kDa extrinsic protein PsbU {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=91.93 E-value=0.032 Score=32.47 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=20.7
Q ss_pred HHCCCHHHHHHCCCCCHHHHHHHH
Q ss_conf 851566875104571167999999
Q gi|254780553|r 102 IILQNSKVIAQIPGISMKIASRIM 125 (207)
Q Consensus 102 I~~~D~~~L~~vpGIGkKtA~rIi 125 (207)
|.+.+...|.++||||+++|+||+
T Consensus 21 lN~As~~eL~~lpGIg~~~A~~Iv 44 (98)
T d2axtu1 21 LNNTNIAAFIQYRGLYPTLAKLIV 44 (98)
T ss_dssp SSSSCGGGGTTSTTCTHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHCHHHHHHHH
T ss_conf 634169999873212699999999
No 33
>d1b43a1 a.60.7.1 (A:220-339) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=91.59 E-value=0.19 Score=27.26 Aligned_cols=83 Identities=7% Similarity=0.183 Sum_probs=40.2
Q ss_pred HHHHCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 01000510112443157899999998515668751045711679999999974222110113344323333344555565
Q gi|254780553|r 77 SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM 156 (207)
Q Consensus 77 ~V~GIGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~K~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (207)
+|.|||||+|+.++-...-. ...+...+..-.+-+..+..+- ... +.....-.
T Consensus 21 gI~GIGpktAlklikk~~~~----------~~~~~~~~~~~~~~~~~~f~~p--------~v~---------d~~~~~~~ 73 (120)
T d1b43a1 21 GIKGIGLKKALEIVRHSKDP----------LAKFQKQSDVDLYAIKEFFLNP--------PVT---------DNYNLVWR 73 (120)
T ss_dssp CSTTCCHHHHHHHHHTCSSG----------GGGTGGGCSSCHHHHHHHHHSC--------CCC---------CCCCCCCC
T ss_pred CCCCCCHHHHHHHHHHHCCH----------HHHHHHCCCCCHHHHHHHHCCC--------CCC---------CCCCCCCC
T ss_conf 68886779999999983799----------9998860122628899986289--------888---------87786779
Q ss_pred CCHHHHHHHHHHH-CCCCHHHHHHHHHHHHH
Q ss_conf 3158999999996-79998999999999985
Q gi|254780553|r 157 PSFAINAISALVN-LGYGQDQATTAVVSVLK 186 (207)
Q Consensus 157 ~~~~~d~~~AL~~-LGy~~~ea~~ai~~i~~ 186 (207)
....+.+..=|+. .||++..+..++..+.+
T Consensus 74 ~pd~~~l~~fL~~e~~f~~~rv~~~l~kl~k 104 (120)
T d1b43a1 74 DPDEEGILKFLCDEHDFSEERVKNGLERLKK 104 (120)
T ss_dssp CCCHHHHHHHHTTTTCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 9998999999998129899999999999999
No 34
>d1b22a_ a.60.4.1 (A:) DNA repair protein Rad51, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=91.52 E-value=0.018 Score=34.09 Aligned_cols=54 Identities=22% Similarity=0.203 Sum_probs=41.2
Q ss_pred HHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 85010005101124431578999999985156687510457116799999999742
Q gi|254780553|r 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 (207)
Q Consensus 75 Li~V~GIGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~ 130 (207)
.+.+.||||+.+=.+-.. ... =+..|..-...-|.+++|+|.++|++|+-.-+-
T Consensus 12 ~L~~~Gig~~~i~kL~~a-G~~-Tv~~i~~at~~~L~~i~G~~e~~A~KIi~~a~k 65 (70)
T d1b22a_ 12 RLEQCGINANDVKKLEEA-GFH-TVEAVAYAPKKELINIKGISEAKADKILAEAAK 65 (70)
T ss_dssp HHHHTTCSHHHHHHHHTT-CCS-SGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHC-CCC-HHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 986089999999999996-863-499998489999987679789999999999998
No 35
>d1rxwa1 a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=91.29 E-value=0.031 Score=32.54 Aligned_cols=37 Identities=16% Similarity=0.323 Sum_probs=25.6
Q ss_pred CCHHHHHHH-HHCCCHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 789999999-85156687510457116799999999742
Q gi|254780553|r 93 ITATELVES-IILQNSKVIAQIPGISMKIASRIMTELKG 130 (207)
Q Consensus 93 l~~~~l~~a-I~~~D~~~L~~vpGIGkKtA~rIi~ELk~ 130 (207)
+++++|+.. +..| ..-...|||||+|||-+++-+-.+
T Consensus 1 lt~eq~iD~~~L~G-sDn~pGV~GIG~ktA~kli~~~gs 38 (105)
T d1rxwa1 1 LTREQLIDIAILVG-TDYNEGVKGVGVKKALNYIKTYGD 38 (105)
T ss_dssp CCHHHHHHHHHHHC-BTTBCCCTTCCHHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHHHC-CCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 98999999999958-878889999378999999999399
No 36
>d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]}
Probab=90.29 E-value=0.082 Score=29.72 Aligned_cols=51 Identities=16% Similarity=0.361 Sum_probs=30.4
Q ss_pred HHHCC--CHHHHHHHCCCCHHHHHHH---HHCCCHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 10005--1011244315789999999---85156687510457116799999999742
Q gi|254780553|r 78 VQGVG--ARVAMGVLSRITATELVES---IILQNSKVIAQIPGISMKIASRIMTELKG 130 (207)
Q Consensus 78 V~GIG--pK~AL~iLs~l~~~~l~~a---I~~~D~~~L~~vpGIGkKtA~rIi~ELk~ 130 (207)
+.|+| ...|-.+... ...+.+- ..-.|...|.++||||+|||.-|..---+
T Consensus 77 i~~~g~y~~ka~~l~~~--a~~i~~~~~g~vp~~~~~L~~LpGVG~kTA~~il~~a~~ 132 (214)
T d1orna_ 77 IRSIGLYRNKARNIQKL--CAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSVAFG 132 (214)
T ss_dssp TGGGSSHHHHHHHHHHH--HHHHHHHSTTSCCSCHHHHTTSTTCCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHC
T ss_conf 21032410888999998--554799839978888999971868663267789998705
No 37
>d1a77a1 a.60.7.1 (A:209-316) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=90.26 E-value=0.057 Score=30.75 Aligned_cols=93 Identities=14% Similarity=0.101 Sum_probs=44.3
Q ss_pred CCHHHHHH-HHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC-------CCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 78999999-985156687510457116799999999742221101133443-------2333334455556531589999
Q gi|254780553|r 93 ITATELVE-SIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQD-------MSCVNKEQAHICSMPSFAINAI 164 (207)
Q Consensus 93 l~~~~l~~-aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~K~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~d~~ 164 (207)
+++++|+. +|.-|..--.-.|||||+|||-++|-+-.. +..+....... ......+.....-.....+.+.
T Consensus 1 lt~~q~IDl~iL~G~dyn~pGV~GIGpktA~klIk~~g~-ie~l~~~~~~~~~~~~~fl~~~v~~~~~~~~~~~d~~~l~ 79 (108)
T d1a77a1 1 ISLDDLIDIAIFMGTDYNPGGVKGIGFKRAYELVRSGVA-KDVLKKEVEYYDEIKRIFKEPKVTDNYSLSLKLPDKEGII 79 (108)
T ss_dssp CCHHHHHHHHHHHCCTTSTTCSTTCCHHHHHHHHHTTCH-HHHHHHHCTTHHHHHHHHHSCCCCCCCCCCCCCCCHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCHHHHH
T ss_conf 988999999999587688778999178999999998388-9999871024699999872899897110217899989999
Q ss_pred HHH-HHCCCCHHHHHHHHHHHHH
Q ss_conf 999-9679998999999999985
Q gi|254780553|r 165 SAL-VNLGYGQDQATTAVVSVLK 186 (207)
Q Consensus 165 ~AL-~~LGy~~~ea~~ai~~i~~ 186 (207)
.=| ..++|++..+++++.++.+
T Consensus 80 ~fL~~e~~f~~~rv~~~l~kl~~ 102 (108)
T d1a77a1 80 KFLVDENDFNYDRVKKHVDKLYN 102 (108)
T ss_dssp HHHTTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 99998649899999999999999
No 38
>d3bzka1 a.60.2.6 (A:474-563) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]}
Probab=90.19 E-value=0.073 Score=30.04 Aligned_cols=49 Identities=10% Similarity=0.243 Sum_probs=37.2
Q ss_pred HHHHHHHHHCCCHHHHHHHCCCCHHHHHHHH-HCCCHHHHHHCCCCCHHHHHHHHH
Q ss_conf 9998501000510112443157899999998-515668751045711679999999
Q gi|254780553|r 72 FMLLQSVQGVGARVAMGVLSRITATELVESI-ILQNSKVIAQIPGISMKIASRIMT 126 (207)
Q Consensus 72 F~~Li~V~GIGpK~AL~iLs~l~~~~l~~aI-~~~D~~~L~~vpGIGkKtA~rIi~ 126 (207)
...|..+.||||+.|-+|+.. .+.- .-....-|.+++|||+|+-++|--
T Consensus 34 ~~~L~~lpGig~~~A~~Iv~~------R~~~G~f~s~edL~~v~gi~~k~~e~i~~ 83 (90)
T d3bzka1 34 AALLARISGLNSTLAQNIVAH------RDANGAFRTRDELKKVSRLGEKTFEQAAG 83 (90)
T ss_dssp HHHHTTSTTCCHHHHHHHHHH------HHHHCSCSSSGGGGGSTTCCHHHHHHHHT
T ss_pred HHHHHHCCCCCHHHHHHHHHH------HHHCCCCCCHHHHHHCCCCCHHHHHHHCC
T ss_conf 999967789899999999999------99869978899995078989999998268
No 39
>d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Methanobacterium thermoformicicum [TaxId: 145262]}
Probab=90.03 E-value=0.088 Score=29.50 Aligned_cols=51 Identities=20% Similarity=0.331 Sum_probs=33.7
Q ss_pred HHHCC--CHHHHHHHCCCCHHHHHHH---HHCCCHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 10005--1011244315789999999---85156687510457116799999999742
Q gi|254780553|r 78 VQGVG--ARVAMGVLSRITATELVES---IILQNSKVIAQIPGISMKIASRIMTELKG 130 (207)
Q Consensus 78 V~GIG--pK~AL~iLs~l~~~~l~~a---I~~~D~~~L~~vpGIGkKtA~rIi~ELk~ 130 (207)
+.|+| .+.|-.|... ...+..- ..-.+...|.++||||+|||.-|+..--+
T Consensus 80 i~~~G~~~~KA~~l~~~--a~~i~~~~~g~~p~~~~~L~~LpGVG~kTA~~il~~~~~ 135 (217)
T d1keaa_ 80 IKEIGLSNQRAEQLKEL--ARVVINDYGGRVPRNRKAILDLPGVGKYTCAAVMCLAFG 135 (217)
T ss_dssp TGGGSCHHHHHHHHHHH--HHHHHHHHTTSCCSCHHHHHTSTTCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99998646788899999--999886126875302588998876424666788987458
No 40
>d1xo1a1 a.60.7.1 (A:186-290) T5 5'-exonuclease {Bacteriophage T5 [TaxId: 10726]}
Probab=89.97 E-value=0.094 Score=29.30 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=14.4
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 68751045711679999999974
Q gi|254780553|r 107 SKVIAQIPGISMKIASRIMTELK 129 (207)
Q Consensus 107 ~~~L~~vpGIGkKtA~rIi~ELk 129 (207)
..-+..|||||+|||.+++-+..
T Consensus 18 sDnipGV~GiG~KtA~kli~~~g 40 (105)
T d1xo1a1 18 GDNIRGVEGIGAKRGYNIIREFG 40 (105)
T ss_dssp GGTBCCCTTCCHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 45876758847899999998702
No 41
>d2duya1 a.60.2.7 (A:11-75) Uncharacterized protein TTHA1967 {Thermus thermophilus [TaxId: 274]}
Probab=89.96 E-value=0.078 Score=29.83 Aligned_cols=25 Identities=24% Similarity=0.394 Sum_probs=21.6
Q ss_pred HHCCCHHHHHHCCCCCHHHHHHHHH
Q ss_conf 8515668751045711679999999
Q gi|254780553|r 102 IILQNSKVIAQIPGISMKIASRIMT 126 (207)
Q Consensus 102 I~~~D~~~L~~vpGIGkKtA~rIi~ 126 (207)
|.+-+...|.++||||.++|++|+-
T Consensus 11 iNtA~~~eL~~lpgig~~~A~~Iv~ 35 (65)
T d2duya1 11 LNEASLEELMALPGIGPVLARRIVE 35 (65)
T ss_dssp TTTCCHHHHTTSTTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHCCCCCHHHHHHHHH
T ss_conf 6228899997778989999999998
No 42
>d1ngna_ a.96.1.2 (A:) Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=89.93 E-value=0.18 Score=27.44 Aligned_cols=52 Identities=10% Similarity=0.021 Sum_probs=34.3
Q ss_pred HHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 9850100051011244315789999999851566875104571167999999997422
Q gi|254780553|r 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131 (207)
Q Consensus 74 ~Li~V~GIGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~K 131 (207)
.++.--|.-.+.|-.|. ++.+.+..+|...|.++||||++||.-+.+=..+.
T Consensus 65 ~~Ir~~G~~~~KAk~I~------~~a~~~ip~~~~~l~~LpGVG~~tad~~~if~~~~ 116 (144)
T d1ngna_ 65 ELLKPLGLYDLRAKTII------KFSDEYLTKQWRYPIELHGIGKYGNDSYRIFCVNE 116 (144)
T ss_dssp HHTGGGSCHHHHHHHHH------HHHHHHHHSCCSSGGGSTTCCHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
T ss_conf 99875424878999999------99855765215667866985689999999998599
No 43
>d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli [TaxId: 562]}
Probab=89.88 E-value=0.1 Score=29.04 Aligned_cols=29 Identities=24% Similarity=0.395 Sum_probs=23.0
Q ss_pred HCCCHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 51566875104571167999999997422
Q gi|254780553|r 103 ILQNSKVIAQIPGISMKIASRIMTELKGK 131 (207)
Q Consensus 103 ~~~D~~~L~~vpGIGkKtA~rIi~ELk~K 131 (207)
.-.+...|.++||||+|||.-|+..--++
T Consensus 104 vp~~~~~L~~LpGVG~kTA~~il~~a~~~ 132 (224)
T d1kg2a_ 104 FPETFEEVAALPGVGRSTAGAILSLSLGK 132 (224)
T ss_dssp CCCSHHHHHTSTTCCHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 40379999999820144568999876401
No 44
>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]}
Probab=89.15 E-value=0.088 Score=29.51 Aligned_cols=23 Identities=22% Similarity=0.534 Sum_probs=19.5
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 87510457116799999999742
Q gi|254780553|r 108 KVIAQIPGISMKIASRIMTELKG 130 (207)
Q Consensus 108 ~~L~~vpGIGkKtA~rIi~ELk~ 130 (207)
..|.++||||+|++++++-..+.
T Consensus 3 d~L~~iPGIg~~~~~~Ll~~f~S 25 (62)
T d2a1ja1 3 DFLLKMPGVNAKNCRSLMHHVKN 25 (62)
T ss_dssp HHHHTSTTCCHHHHHHHHHHCSS
T ss_pred HHHHCCCCCCHHHHHHHHHHHCC
T ss_conf 68766999999999999998524
No 45
>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus stearothermophilus [TaxId: 1422]}
Probab=89.10 E-value=0.11 Score=28.75 Aligned_cols=51 Identities=10% Similarity=0.210 Sum_probs=31.5
Q ss_pred HHHCC-CHHHHHHHCCCCHHHHHHH---HHCCCHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 10005-1011244315789999999---85156687510457116799999999742
Q gi|254780553|r 78 VQGVG-ARVAMGVLSRITATELVES---IILQNSKVIAQIPGISMKIASRIMTELKG 130 (207)
Q Consensus 78 V~GIG-pK~AL~iLs~l~~~~l~~a---I~~~D~~~L~~vpGIGkKtA~rIi~ELk~ 130 (207)
+.|+| ++.|-.++.. ...+..- ..-.+...|.++||||+|||.-|+..--+
T Consensus 75 i~~~G~~~ra~~l~~~--~~~~~~~~~G~vp~~~~~Ll~LpGIG~kTA~~il~~a~~ 129 (221)
T d1rrqa1 75 WEGLGYYSRVRNLHAA--VKEVKTRYGGKVPDDPDEFSRLKGVGPYTVGAVLSLAYG 129 (221)
T ss_dssp HTTSSCTHHHHHHHHH--HHHHHHHHTTCCCCSHHHHHTSTTCCHHHHHHHHHHHTC
T ss_pred HCCCHHHHHHHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 2030122235789988--877766407988618999998887504788899999855
No 46
>d1mpga1 a.96.1.3 (A:100-282) 3-Methyladenine DNA glycosylase II (gene alkA or aidA) {Escherichia coli [TaxId: 562]}
Probab=89.09 E-value=0.18 Score=27.44 Aligned_cols=65 Identities=17% Similarity=0.180 Sum_probs=34.3
Q ss_pred CCEEEEEEECHHHHHH--HHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCC------------HHHHHHCCCCCHHHH
Q ss_conf 8418999706779999--99985010005101124431578999999985156------------687510457116799
Q gi|254780553|r 56 DQIRLFGFLSDLDRQW--FMLLQSVQGVGARVAMGVLSRITATELVESIILQN------------SKVIAQIPGISMKIA 121 (207)
Q Consensus 56 d~~~LyGF~~~~Er~~--F~~Li~V~GIGpK~AL~iLs~l~~~~l~~aI~~~D------------~~~L~~vpGIGkKtA 121 (207)
+...+|-|.+.++-.- -+.|... |+....|=.|. .+.+++.+++ .+.|.++||||++||
T Consensus 49 ~~~~~~~FPtp~~l~~~~~~~lr~~-Gls~~Ka~~i~------~~a~~~~~g~l~~~~~~~~~e~~~~L~~l~GIGpwTA 121 (183)
T d1mpga1 49 DFPEYICFPTPQRLAAADPQALKAL-GMPLKRAEALI------HLANAALEGTLPMTIPGDVEQAMKTLQTFPGIGRWTA 121 (183)
T ss_dssp SCTTCBCCCCHHHHHTCCHHHHHHT-TSCHHHHHHHH------HHHHHHHHTCSCSSCCSCHHHHHHHHTTSTTCCHHHH
T ss_pred CCCCCCCCCCHHHHHCCCHHHHHHC-CCCHHHHHHHH------HHHHHHHCCCHHHHCCCCHHHHHHHHHHHHCCCHHHH
T ss_conf 5643247986999984999899775-99677899999------9999998284554302557999999998645349999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780553|r 122 SRIMTE 127 (207)
Q Consensus 122 ~rIi~E 127 (207)
+=+.+-
T Consensus 122 d~illf 127 (183)
T d1mpga1 122 NYFALR 127 (183)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999986
No 47
>d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]}
Probab=89.03 E-value=0.11 Score=28.76 Aligned_cols=52 Identities=17% Similarity=0.368 Sum_probs=31.8
Q ss_pred HHHHCCC--HHHHHHHCCCCHHHHHHH---HHCCCHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 0100051--011244315789999999---85156687510457116799999999742
Q gi|254780553|r 77 SVQGVGA--RVAMGVLSRITATELVES---IILQNSKVIAQIPGISMKIASRIMTELKG 130 (207)
Q Consensus 77 ~V~GIGp--K~AL~iLs~l~~~~l~~a---I~~~D~~~L~~vpGIGkKtA~rIi~ELk~ 130 (207)
-+.|+|- ..|-.+... ...+.+- ..-.+...|.++||||+|||.-|..---+
T Consensus 75 ~i~~~G~y~~Ka~~l~~~--a~~i~~~~~g~~p~~~~~L~~LpGVG~~TA~~Il~~a~~ 131 (211)
T d2abka_ 75 YIKTIGLYNSKAENIIKT--CRILLEQHNGEVPEDRAALEALPGVGRKTANVVLNTAFG 131 (211)
T ss_dssp HHTTSTTHHHHHHHHHHH--HHHHHHHTTTSCCSCHHHHHHSTTCCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHC
T ss_conf 777754411578899999--888998714860477999999986051789999999856
No 48
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=88.82 E-value=0.068 Score=30.24 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=20.1
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 87510457116799999999742
Q gi|254780553|r 108 KVIAQIPGISMKIASRIMTELKG 130 (207)
Q Consensus 108 ~~L~~vpGIGkKtA~rIi~ELk~ 130 (207)
+.|.++||||+++|++++-..++
T Consensus 2 S~L~~I~gVG~~~a~~L~~~F~s 24 (56)
T d1kfta_ 2 SSLETIEGVGPKRRQMLLKYMGG 24 (56)
T ss_dssp CGGGGCTTCSSSHHHHHHHHHSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 87535898009999999999399
No 49
>d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII) {Helicobacter pylori [TaxId: 210]}
Probab=88.78 E-value=0.12 Score=28.52 Aligned_cols=25 Identities=16% Similarity=0.113 Sum_probs=20.0
Q ss_pred CCCHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 1566875104571167999999997
Q gi|254780553|r 104 LQNSKVIAQIPGISMKIASRIMTEL 128 (207)
Q Consensus 104 ~~D~~~L~~vpGIGkKtA~rIi~EL 128 (207)
.+..+.|.++||||+|||.-+..--
T Consensus 116 ~~~~~~L~~lpGIG~kTA~~vl~~~ 140 (217)
T d1pu6a_ 116 EVTREWLLDQKGIGKESADAILCYA 140 (217)
T ss_dssp HCCHHHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7899999987636569999999997
No 50
>d2fmpa2 a.60.12.1 (A:92-148) DNA polymerase beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=88.47 E-value=0.11 Score=28.76 Aligned_cols=22 Identities=14% Similarity=0.365 Sum_probs=17.0
Q ss_pred CCHHHHHHCCCCCHHHHHHHHH
Q ss_conf 5668751045711679999999
Q gi|254780553|r 105 QNSKVIAQIPGISMKIASRIMT 126 (207)
Q Consensus 105 ~D~~~L~~vpGIGkKtA~rIi~ 126 (207)
.-.+.|++|.|||+++|++++-
T Consensus 4 ~~l~~l~~I~GvGp~~A~~l~~ 25 (57)
T d2fmpa2 4 SSINFLTRVSGIGPSAARKFVD 25 (57)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHH
T ss_conf 5899885344314999999999
No 51
>d1jmsa3 a.60.12.1 (A:243-302) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=88.22 E-value=0.12 Score=28.61 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=14.1
Q ss_pred HHHHHHCCCCCHHHHHHHHH
Q ss_conf 68751045711679999999
Q gi|254780553|r 107 SKVIAQIPGISMKIASRIMT 126 (207)
Q Consensus 107 ~~~L~~vpGIGkKtA~rIi~ 126 (207)
.+.|++|.|||+++|++.+-
T Consensus 7 l~~f~~I~GvGp~~A~~l~~ 26 (60)
T d1jmsa3 7 FKLFTSVFGVGLKTAEKWFR 26 (60)
T ss_dssp HHHHHTSTTCCHHHHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHH
T ss_conf 99986116322999999999
No 52
>d2i5ha1 e.71.1.1 (A:16-195) Hypothetical protein AF1531 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=88.16 E-value=0.15 Score=28.05 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=19.2
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 87510457116799999999742
Q gi|254780553|r 108 KVIAQIPGISMKIASRIMTELKG 130 (207)
Q Consensus 108 ~~L~~vpGIGkKtA~rIi~ELk~ 130 (207)
-+|.-+||||||+|++|+-|=+.
T Consensus 115 H~leLLPGIGkk~~~~iveeR~~ 137 (180)
T d2i5ha1 115 HQLELLPGVGKKMMWAIIEERKK 137 (180)
T ss_dssp BGGGGSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHCC
T ss_conf 88874345268999999999744
No 53
>d2bcqa2 a.60.12.1 (A:329-385) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]}
Probab=87.88 E-value=0.13 Score=28.39 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=13.7
Q ss_pred HHHHHHCCCCCHHHHHHHHH
Q ss_conf 68751045711679999999
Q gi|254780553|r 107 SKVIAQIPGISMKIASRIMT 126 (207)
Q Consensus 107 ~~~L~~vpGIGkKtA~rIi~ 126 (207)
.+.|++|.|||+|+|++.+-
T Consensus 7 l~~ft~I~GvGp~~A~~l~~ 26 (57)
T d2bcqa2 7 LELFSNIWGAGTKTAQMWYQ 26 (57)
T ss_dssp HHHHHTSTTCCHHHHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHH
T ss_conf 99986226223999999999
No 54
>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=87.54 E-value=0.073 Score=30.03 Aligned_cols=53 Identities=13% Similarity=0.271 Sum_probs=30.3
Q ss_pred HHHHCCCCCHHHHHHHHHH-HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 7510457116799999999-7422211011334432333334455556531589999999967999899999999998
Q gi|254780553|r 109 VIAQIPGISMKIASRIMTE-LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVL 185 (207)
Q Consensus 109 ~L~~vpGIGkKtA~rIi~E-Lk~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~AL~~LGy~~~ea~~ai~~i~ 185 (207)
.|..+||||+++|+|+.-. .++ +.++.. ...++ +... =|+.++.|.+.+..+.
T Consensus 2 ~L~~i~GIG~~~a~~L~~~g~~s-v~~l~~--------------------a~~~e-L~~i--~Gi~~~~A~~i~~~ar 55 (61)
T d1pzna1 2 SIEDLPGVGPATAEKLREAGYDT-LEAIAV--------------------ASPIE-LKEV--AGISEGTALKIIQAAR 55 (61)
T ss_dssp CSSCCTTCCHHHHHHHHTTTCCS-HHHHHT--------------------CCHHH-HHHH--HCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHCCCC-HHHHHH--------------------CCHHH-HHHC--CCCCHHHHHHHHHHHH
T ss_conf 50217997999999999944999-999985--------------------99999-9777--9999999999999999
No 55
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]}
Probab=87.49 E-value=0.15 Score=28.05 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=19.5
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 87510457116799999999742
Q gi|254780553|r 108 KVIAQIPGISMKIASRIMTELKG 130 (207)
Q Consensus 108 ~~L~~vpGIGkKtA~rIi~ELk~ 130 (207)
-.|..+||||+++|.+|+-...+
T Consensus 13 ~~L~~IpgIG~~~a~~L~~~F~s 35 (70)
T d2bgwa1 13 YILQSFPGIGRRTAERILERFGS 35 (70)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHSS
T ss_pred HHHCCCCCCCHHHHHHHHHHHCC
T ss_conf 99808999579999999998298
No 56
>d2fmpa1 a.60.6.1 (A:10-91) DNA polymerase beta, N-terminal (8 kD)-domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=86.99 E-value=0.15 Score=27.93 Aligned_cols=38 Identities=29% Similarity=0.457 Sum_probs=24.2
Q ss_pred HHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 011244315789999999851566875104571167999999997
Q gi|254780553|r 84 RVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 (207)
Q Consensus 84 K~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~EL 128 (207)
+.|...+..++.. | .+...+.++||||+++|++|--=+
T Consensus 31 ~~Aa~~i~~l~~~-----i--~~~~~l~~i~GIGk~ia~kI~E~~ 68 (82)
T d2fmpa1 31 RKAASVIAKYPHK-----I--KSGAEAKKLPGVGTKIAEKIDEFL 68 (82)
T ss_dssp HHHHHHHHHCSSC-----C--CCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCC-----C--CCHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 9999999869965-----5--789997649996589999999999
No 57
>d1xo1a1 a.60.7.1 (A:186-290) T5 5'-exonuclease {Bacteriophage T5 [TaxId: 10726]}
Probab=85.82 E-value=0.097 Score=29.20 Aligned_cols=25 Identities=16% Similarity=0.559 Sum_probs=19.3
Q ss_pred HHHHCCCHHHHHHHCCCC-HHHHHHH
Q ss_conf 010005101124431578-9999999
Q gi|254780553|r 77 SVQGVGARVAMGVLSRIT-ATELVES 101 (207)
Q Consensus 77 ~V~GIGpK~AL~iLs~l~-~~~l~~a 101 (207)
+|.|||||+|..++..+. .+.+.+.
T Consensus 23 GV~GiG~KtA~kli~~~gsle~i~~~ 48 (105)
T d1xo1a1 23 GVEGIGAKRGYNIIREFGNVLDIIDQ 48 (105)
T ss_dssp CCTTCCHHHHHHHHHHHCSHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHCCHHHHHHHH
T ss_conf 75884789999999870265899986
No 58
>d2bcqa1 a.60.6.1 (A:252-327) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]}
Probab=85.53 E-value=0.21 Score=27.00 Aligned_cols=38 Identities=24% Similarity=0.426 Sum_probs=23.7
Q ss_pred HHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 011244315789999999851566875104571167999999997
Q gi|254780553|r 84 RVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 (207)
Q Consensus 84 K~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~EL 128 (207)
+.|...|..++-. | .+...+.++||||+++|++|.-=+
T Consensus 29 ~~A~~~l~~l~~~-----i--~~~~~l~~lpGiG~~i~~kI~Eil 66 (76)
T d2bcqa1 29 AKAINALKSFHKP-----V--TSYQEACSIPGIGKRMAEKIIEIL 66 (76)
T ss_dssp HHHHHHHHSCCSC-----C--CCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCC-----C--CCHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 9999999868966-----5--899998448873289999999999
No 59
>d2csba3 a.60.2.4 (A:410-464) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=85.49 E-value=0.39 Score=25.20 Aligned_cols=48 Identities=17% Similarity=0.258 Sum_probs=34.2
Q ss_pred HHHHHHHCCCHHHHHHHCCC-CHHHHHHHHHCCCHHHHHHCCCCCHHHH
Q ss_conf 98501000510112443157-8999999985156687510457116799
Q gi|254780553|r 74 LLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMKIA 121 (207)
Q Consensus 74 ~Li~V~GIGpK~AL~iLs~l-~~~~l~~aI~~~D~~~L~~vpGIGkKtA 121 (207)
.|.+-.|||-|+|-.+|..+ .|+.+.+....=.+..|.++.|+|.+.-
T Consensus 3 eltkkegvgrktaerllrafgnpervkqlarefeieklasvegvgervl 51 (55)
T d2csba3 3 ELTKKEGVGRKTAERLLRAFGNPERVKQLAREFEIEKLASVEGVGERVL 51 (55)
T ss_dssp HHHTSTTCCHHHHHHHHHHHSSHHHHHHHHHTTCHHHHHTSTTCSHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 1566405247689999998199899999999987999973202389999
No 60
>d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Methanobacterium thermoformicicum [TaxId: 145262]}
Probab=84.81 E-value=0.15 Score=28.05 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=14.7
Q ss_pred HHHHHHHHHCCCHHHHHHHCC
Q ss_conf 999850100051011244315
Q gi|254780553|r 72 FMLLQSVQGVGARVAMGVLSR 92 (207)
Q Consensus 72 F~~Li~V~GIGpK~AL~iLs~ 92 (207)
++.|+++.|||||+|-.||+.
T Consensus 112 ~~~L~~LpGVG~kTA~~il~~ 132 (217)
T d1keaa_ 112 RKAILDLPGVGKYTCAAVMCL 132 (217)
T ss_dssp HHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 588998876424666788987
No 61
>d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Probab=84.68 E-value=0.23 Score=26.67 Aligned_cols=25 Identities=16% Similarity=0.460 Sum_probs=20.0
Q ss_pred CHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 6687510457116799999999742
Q gi|254780553|r 106 NSKVIAQIPGISMKIASRIMTELKG 130 (207)
Q Consensus 106 D~~~L~~vpGIGkKtA~rIi~ELk~ 130 (207)
....|..+||||+++|++|+-...+
T Consensus 8 ~~~~L~~I~gIG~~~a~~L~~~f~s 32 (68)
T d1x2ia1 8 QRLIVEGLPHVSATLARRLLKHFGS 32 (68)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHCS
T ss_pred HHHHHCCCCCCCHHHHHHHHHHCCC
T ss_conf 9999818999689999999997499
No 62
>d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle domain {Mycobacterium leprae [TaxId: 1769]}
Probab=84.66 E-value=0.24 Score=26.56 Aligned_cols=55 Identities=15% Similarity=0.324 Sum_probs=32.2
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-CCCCHHHHHHHHHHH
Q ss_conf 87510457116799999999742221101133443233333445555653158999999996-799989999999999
Q gi|254780553|r 108 KVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN-LGYGQDQATTAVVSV 184 (207)
Q Consensus 108 ~~L~~vpGIGkKtA~rIi~ELk~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~AL~~-LGy~~~ea~~ai~~i 184 (207)
..|.+|+|||+|+|-.|+..+.- ..+...+.. .+ ..+|.. =|..++-|++.+-+.
T Consensus 9 ~~Li~V~GIGpK~Al~iLs~~~~--~~l~~aI~~---------------~D-----~~~L~~vpGIG~KtA~rIi~eL 64 (71)
T d1bvsa2 9 LALLSVSGVGPRLAMATLAVHDA--AALRQALAD---------------SD-----VASLTRVPGIGRRGAERIVLEL 64 (71)
T ss_dssp HHHHTSSSCCHHHHHHHHHHSCH--HHHHHHTTT---------------TC-----HHHHHTSTTCCHHHHHHHHHHS
T ss_pred HHHHCCCCCCHHHHHHHHHHCCH--HHHHHHHHC---------------CC-----HHHHHCCCCCCHHHHHHHHHHH
T ss_conf 99855488179999999984999--999999981---------------79-----8884319997799999999999
No 63
>d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]}
Probab=83.99 E-value=0.26 Score=26.31 Aligned_cols=60 Identities=23% Similarity=0.397 Sum_probs=36.4
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-CCCCHHHHHHHHHHHHH
Q ss_conf 87510457116799999999742221101133443233333445555653158999999996-79998999999999985
Q gi|254780553|r 108 KVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN-LGYGQDQATTAVVSVLK 186 (207)
Q Consensus 108 ~~L~~vpGIGkKtA~rIi~ELk~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~AL~~-LGy~~~ea~~ai~~i~~ 186 (207)
..|.+|+|||+|+|-.|+..+.- ..+...+.. +=..+|.. =|..++-|++.+.++..
T Consensus 9 ~~Li~V~GIGpK~Al~iLs~~~~--~~l~~aI~~--------------------~D~~~L~~vpGIG~KtA~rIi~eLk~ 66 (78)
T d1cuka2 9 KELIKTNGVGPKLALAILSGMSA--QQFVNAVER--------------------EEVGALVKLPGIGKKTAERLIVEMKD 66 (78)
T ss_dssp HHHHHSSSCCHHHHHHHHHHSCH--HHHHHHHHT--------------------TCHHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCHHHHHHHHHHCCH--HHHHHHHHC--------------------CCHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 99876688019999999984899--999999980--------------------68887122999789999999999999
Q ss_pred HCC
Q ss_conf 168
Q gi|254780553|r 187 KEK 189 (207)
Q Consensus 187 ~~~ 189 (207)
+..
T Consensus 67 K~~ 69 (78)
T d1cuka2 67 RFK 69 (78)
T ss_dssp HGG
T ss_pred HHH
T ss_conf 998
No 64
>d1b43a1 a.60.7.1 (A:220-339) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=83.78 E-value=0.12 Score=28.56 Aligned_cols=36 Identities=31% Similarity=0.429 Sum_probs=22.5
Q ss_pred CHHHHHH-HHHCCCHHH-HHHCCCCCHHHHHHHHHHHHH
Q ss_conf 8999999-985156687-510457116799999999742
Q gi|254780553|r 94 TATELVE-SIILQNSKV-IAQIPGISMKIASRIMTELKG 130 (207)
Q Consensus 94 ~~~~l~~-aI~~~D~~~-L~~vpGIGkKtA~rIi~ELk~ 130 (207)
+.++|+. +|.-| ... ...|||||+|||=+++-+-+.
T Consensus 2 t~eqfIdl~iL~G-~DY~~~gI~GIGpktAlklikk~~~ 39 (120)
T d1b43a1 2 TREKLIELAILVG-TDYNPGGIKGIGLKKALEIVRHSKD 39 (120)
T ss_dssp CHHHHHHHHHHHC-CTTSTTCSTTCCHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 8899999999957-7788656888677999999998379
No 65
>d1cmwa1 a.60.7.1 (A:174-289) 5' to 3' exonuclease domain of DNA polymerase Taq {Thermus aquaticus [TaxId: 271]}
Probab=83.75 E-value=0.12 Score=28.64 Aligned_cols=19 Identities=26% Similarity=0.501 Sum_probs=15.9
Q ss_pred HHHHCCCHHHHHHHCCCCH
Q ss_conf 0100051011244315789
Q gi|254780553|r 77 SVQGVGARVAMGVLSRITA 95 (207)
Q Consensus 77 ~V~GIGpK~AL~iLs~l~~ 95 (207)
+|.|||||+|..++..+..
T Consensus 22 Gv~GiG~KtA~kll~~~gs 40 (116)
T d1cmwa1 22 GVKGIGEKTARKLLEEWGS 40 (116)
T ss_dssp CCCCSTTCTTTTTGGGGGT
T ss_pred CCCCCCCHHHHHHHHHCCH
T ss_conf 6043373027789873221
No 66
>d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli [TaxId: 562]}
Probab=83.50 E-value=0.18 Score=27.46 Aligned_cols=20 Identities=35% Similarity=0.517 Sum_probs=17.4
Q ss_pred HHHHHHHHHCCCHHHHHHHC
Q ss_conf 99985010005101124431
Q gi|254780553|r 72 FMLLQSVQGVGARVAMGVLS 91 (207)
Q Consensus 72 F~~Li~V~GIGpK~AL~iLs 91 (207)
++.|+++.|||||+|=.||+
T Consensus 108 ~~~L~~LpGVG~kTA~~il~ 127 (224)
T d1kg2a_ 108 FEEVAALPGVGRSTAGAILS 127 (224)
T ss_dssp HHHHHTSTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999998201445689998
No 67
>d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=83.03 E-value=0.36 Score=25.41 Aligned_cols=26 Identities=4% Similarity=0.227 Sum_probs=21.0
Q ss_pred CCHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 56687510457116799999999742
Q gi|254780553|r 105 QNSKVIAQIPGISMKIASRIMTELKG 130 (207)
Q Consensus 105 ~D~~~L~~vpGIGkKtA~rIi~ELk~ 130 (207)
.=...|+.+||||+++|.+++-..+.
T Consensus 16 ~~~~~L~~I~gIg~~~a~~L~~~F~s 41 (78)
T d2a1jb1 16 RVTECLTTVKSVNKTDSQTLLTTFGS 41 (78)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHHSS
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHCC
T ss_conf 99998638997599999999999398
No 68
>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus stearothermophilus [TaxId: 1422]}
Probab=82.90 E-value=0.19 Score=27.20 Aligned_cols=21 Identities=29% Similarity=0.244 Sum_probs=16.7
Q ss_pred HHHHHHHHHCCCHHHHHHHCC
Q ss_conf 999850100051011244315
Q gi|254780553|r 72 FMLLQSVQGVGARVAMGVLSR 92 (207)
Q Consensus 72 F~~Li~V~GIGpK~AL~iLs~ 92 (207)
++.|+++.|||||+|-.||+.
T Consensus 106 ~~~Ll~LpGIG~kTA~~il~~ 126 (221)
T d1rrqa1 106 PDEFSRLKGVGPYTVGAVLSL 126 (221)
T ss_dssp HHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999998887504788899999
No 69
>d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]}
Probab=82.84 E-value=0.19 Score=27.32 Aligned_cols=20 Identities=35% Similarity=0.313 Sum_probs=15.3
Q ss_pred HHHHHHHHHCCCHHHHHHHC
Q ss_conf 99985010005101124431
Q gi|254780553|r 72 FMLLQSVQGVGARVAMGVLS 91 (207)
Q Consensus 72 F~~Li~V~GIGpK~AL~iLs 91 (207)
++.|+++.|||||+|=+||+
T Consensus 109 ~~~L~~LpGVG~kTA~~il~ 128 (214)
T d1orna_ 109 RDELMKLPGVGRKTANVVVS 128 (214)
T ss_dssp HHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHHCCCCCCCHHHHHHH
T ss_conf 99997186866326778999
No 70
>d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]}
Probab=82.31 E-value=0.33 Score=25.66 Aligned_cols=59 Identities=17% Similarity=0.278 Sum_probs=34.1
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-CCCCHHHHHHHHHHHHH
Q ss_conf 87510457116799999999742221101133443233333445555653158999999996-79998999999999985
Q gi|254780553|r 108 KVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN-LGYGQDQATTAVVSVLK 186 (207)
Q Consensus 108 ~~L~~vpGIGkKtA~rIi~ELk~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~AL~~-LGy~~~ea~~ai~~i~~ 186 (207)
..|.+|+|||+|+|-.|+..+.- ..+...+.. +=..+|.. =|..++-|++.+.+...
T Consensus 10 ~~Li~V~GIGpk~Al~iLs~~~~--~~l~~aI~~--------------------~D~~~L~~vpGIG~KtA~rIi~eLk~ 67 (73)
T d1ixra1 10 ELLLSVSGVGPKVALALLSALPP--RLLARALLE--------------------GDARLLTSASGVGRRLAERIALELKG 67 (73)
T ss_dssp HHHHSSSCCCHHHHHHHHHHSCH--HHHHHHHHT--------------------TCHHHHTTSTTCCHHHHHHHHHHHTT
T ss_pred HHHHCCCCCCHHHHHHHHHHCCH--HHHHHHHHH--------------------CCHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 99865588079999999987368--899999980--------------------68998652999779999999999986
Q ss_pred HC
Q ss_conf 16
Q gi|254780553|r 187 KE 188 (207)
Q Consensus 187 ~~ 188 (207)
..
T Consensus 68 K~ 69 (73)
T d1ixra1 68 KV 69 (73)
T ss_dssp TS
T ss_pred CC
T ss_conf 23
No 71
>d1jmsa1 a.60.6.1 (A:148-242) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=82.31 E-value=0.31 Score=25.86 Aligned_cols=37 Identities=27% Similarity=0.200 Sum_probs=23.5
Q ss_pred CHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHH
Q ss_conf 10112443157899999998515668751045711679999999
Q gi|254780553|r 83 ARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 (207)
Q Consensus 83 pK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ 126 (207)
-+.|...|..++-. | .+..-+..+||||+++|++|-=
T Consensus 44 Y~rAa~~i~~l~~~-----i--~~~~~l~~i~GIGk~i~~kI~E 80 (95)
T d1jmsa1 44 FMRASSVLKSLPFP-----I--TSMKDTEGIPCLGDKVKSIIEG 80 (95)
T ss_dssp HHHHHHHHHTCSSC-----C--CSGGGGTTCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCC-----C--CCHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999999869965-----5--8899997434342899999999
No 72
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=81.06 E-value=0.48 Score=24.61 Aligned_cols=28 Identities=18% Similarity=0.302 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 3158999999996799989999999999
Q gi|254780553|r 157 PSFAINAISALVNLGYGQDQATTAVVSV 184 (207)
Q Consensus 157 ~~~~~d~~~AL~~LGy~~~ea~~ai~~i 184 (207)
....++++..|+.+||++.++++|+..-
T Consensus 16 ~~~de~~v~~L~~MGF~~~~a~~AL~~~ 43 (63)
T d1wgna_ 16 SPSERQCVETVVNMGYSYECVLRAMKKK 43 (63)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 8024999999998699899999999990
No 73
>d1jmsa3 a.60.12.1 (A:243-302) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=80.26 E-value=0.14 Score=28.16 Aligned_cols=30 Identities=30% Similarity=0.341 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHCC--CCHHHHH
Q ss_conf 99999850100051011244315--7899999
Q gi|254780553|r 70 QWFMLLQSVQGVGARVAMGVLSR--ITATELV 99 (207)
Q Consensus 70 ~~F~~Li~V~GIGpK~AL~iLs~--l~~~~l~ 99 (207)
..++.|.+|.||||++|-...+. -+.++|.
T Consensus 5 ~~l~~f~~I~GvGp~~A~~l~~~Gi~ti~dL~ 36 (60)
T d1jmsa3 5 KSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQ 36 (60)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHTTCCSHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHH
T ss_conf 89999861163229999999993899899997
No 74
>d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]}
Probab=79.31 E-value=0.047 Score=31.29 Aligned_cols=20 Identities=35% Similarity=0.454 Sum_probs=13.3
Q ss_pred HHHHHHHHHCCCHHHHHHHC
Q ss_conf 99985010005101124431
Q gi|254780553|r 72 FMLLQSVQGVGARVAMGVLS 91 (207)
Q Consensus 72 F~~Li~V~GIGpK~AL~iLs 91 (207)
++.|.++.||||++|=+||+
T Consensus 108 ~~~L~~LpGVG~~TA~~Il~ 127 (211)
T d2abka_ 108 RAALEALPGVGRKTANVVLN 127 (211)
T ss_dssp HHHHHHSTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHCHHHHHHHHH
T ss_conf 99999998605178999999
No 75
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=79.29 E-value=1 Score=22.36 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.1
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 999999996799989999999999
Q gi|254780553|r 161 INAISALVNLGYGQDQATTAVVSV 184 (207)
Q Consensus 161 ~d~~~AL~~LGy~~~ea~~ai~~i 184 (207)
+.+++-|+++||++.+|++|+.+-
T Consensus 5 ~~ai~eL~~MGF~e~~A~~AL~k~ 28 (43)
T d2g3qa1 5 SLAVEELSGMGFTEEEAHNALEKC 28 (43)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 899999995587889999999985
No 76
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=79.14 E-value=0.81 Score=23.09 Aligned_cols=26 Identities=12% Similarity=0.331 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 58999999996799989999999999
Q gi|254780553|r 159 FAINAISALVNLGYGQDQATTAVVSV 184 (207)
Q Consensus 159 ~~~d~~~AL~~LGy~~~ea~~ai~~i 184 (207)
..++++.-|+.+||++.++++|+...
T Consensus 3 ~~e~~i~~L~~MGF~~~~a~~AL~~~ 28 (41)
T d1oqya1 3 EYETMLTEIMSMGYERERVVAALRAS 28 (41)
T ss_dssp THHHHHHHHHTTTCCSHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 68999999998599899999999985
No 77
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=79.11 E-value=1.3 Score=21.76 Aligned_cols=27 Identities=19% Similarity=0.448 Sum_probs=22.5
Q ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 158999999996799989999999999
Q gi|254780553|r 158 SFAINAISALVNLGYGQDQATTAVVSV 184 (207)
Q Consensus 158 ~~~~d~~~AL~~LGy~~~ea~~ai~~i 184 (207)
...++++.-|+.+||++..+++|+...
T Consensus 27 ~~d~~~i~~L~~MGF~~~~a~~AL~~~ 53 (73)
T d1wiva_ 27 DIDQSSVDTLLSFGFAEDVARKALKAS 53 (73)
T ss_dssp SSCHHHHHHHHHHTCCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 989999999993699999999999992
No 78
>d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3 {Thermus filiformis [TaxId: 276]}
Probab=76.42 E-value=0.34 Score=25.59 Aligned_cols=50 Identities=18% Similarity=0.286 Sum_probs=25.1
Q ss_pred HHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCHHH---HHHCCCCCHHHHHHHHHHH
Q ss_conf 9985010005101124431578999999985156687---5104571167999999997
Q gi|254780553|r 73 MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKV---IAQIPGISMKIASRIMTEL 128 (207)
Q Consensus 73 ~~Li~V~GIGpK~AL~iLs~l~~~~l~~aI~~~D~~~---L~~vpGIGkKtA~rIi~EL 128 (207)
..|..+.|.|+|.|-.++..+.. + .+.+... -..+||||+++|+.|.-..
T Consensus 75 ~~l~~l~~~g~ksa~nl~~~Ie~-----s-k~~~l~r~l~aLGI~~vG~~~Ak~La~~f 127 (181)
T d1dgsa1 75 EDLLGLERMGEKSAQNLLRQIEE-----S-KHRGLERLLYALGLPGVGEVLARNLARRF 127 (181)
T ss_dssp HHHHTTSSCCSTTHHHHHHHHHH-----G-GGCCHHHHHHHTTCSSCCHHHHHHHHHTT
T ss_pred HHHHCCCCCCHHHHHHHHHHHHH-----H-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77743664460789999999874-----1-11138999999875434477899999876
No 79
>d1cmwa1 a.60.7.1 (A:174-289) 5' to 3' exonuclease domain of DNA polymerase Taq {Thermus aquaticus [TaxId: 271]}
Probab=75.94 E-value=0.081 Score=29.73 Aligned_cols=31 Identities=19% Similarity=0.328 Sum_probs=21.3
Q ss_pred HHHHCCCHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 9985156687510457116799999999742
Q gi|254780553|r 100 ESIILQNSKVIAQIPGISMKIASRIMTELKG 130 (207)
Q Consensus 100 ~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~ 130 (207)
.|+.-.-..-+-.|||||+|||.+++-+..+
T Consensus 10 ~~l~GD~sDnipGv~GiG~KtA~kll~~~gs 40 (116)
T d1cmwa1 10 RALTGDESDNLPGVKGIGEKTARKLLEEWGS 40 (116)
T ss_dssp HHTTCCSSSCCCCCCCSTTCTTTTTGGGGGT
T ss_pred HHHHCCCCCCCCCCCCCCCHHHHHHHHHCCH
T ss_conf 9982966358646043373027789873221
No 80
>d2uubm1 a.156.1.1 (M:2-126) Ribosomal protein S13 {Thermus thermophilus [TaxId: 274]}
Probab=75.52 E-value=0.59 Score=24.02 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=18.6
Q ss_pred HHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 8751045711679999999974
Q gi|254780553|r 108 KVIAQIPGISMKIASRIMTELK 129 (207)
Q Consensus 108 ~~L~~vpGIGkKtA~rIi~ELk 129 (207)
-+|+.+.|||.++|.+||-.|.
T Consensus 16 ~ALt~I~GIG~~~A~~Ic~~lg 37 (125)
T d2uubm1 16 VALTYIYGIGKARAKEALEKTG 37 (125)
T ss_dssp HHHTTSTTCCHHHHHHHHHTTT
T ss_pred EEEEEEECCCHHHHHHHHHHCC
T ss_conf 7632055818999999999829
No 81
>d2gy9m1 a.156.1.1 (M:1-114) Ribosomal protein S13 {Escherichia coli [TaxId: 562]}
Probab=74.47 E-value=0.92 Score=22.71 Aligned_cols=22 Identities=14% Similarity=0.223 Sum_probs=19.3
Q ss_pred HHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 8751045711679999999974
Q gi|254780553|r 108 KVIAQIPGISMKIASRIMTELK 129 (207)
Q Consensus 108 ~~L~~vpGIGkKtA~rIi~ELk 129 (207)
-+|+.+.|||+++|..|+-.|.
T Consensus 16 ~ALt~I~GIG~~~A~~Ic~~lg 37 (114)
T d2gy9m1 16 IALTSIYGVGKTRSKAILAAAG 37 (114)
T ss_dssp HHHTTSSSCCHHHHHHHHHHHT
T ss_pred EEEEEEECCCHHHHHHHHHHCC
T ss_conf 8723156848999999999819
No 82
>d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII) {Helicobacter pylori [TaxId: 210]}
Probab=73.00 E-value=0.22 Score=26.82 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=5.4
Q ss_pred HHHHHHHCCCHHHHHH
Q ss_conf 9850100051011244
Q gi|254780553|r 74 LLQSVQGVGARVAMGV 89 (207)
Q Consensus 74 ~Li~V~GIGpK~AL~i 89 (207)
.|+++.|||||+|=.+
T Consensus 121 ~L~~lpGIG~kTA~~v 136 (217)
T d1pu6a_ 121 WLLDQKGIGKESADAI 136 (217)
T ss_dssp HHHTSTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9998763656999999
No 83
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=72.45 E-value=1.8 Score=20.82 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 58999999996799989999999999
Q gi|254780553|r 159 FAINAISALVNLGYGQDQATTAVVSV 184 (207)
Q Consensus 159 ~~~d~~~AL~~LGy~~~ea~~ai~~i 184 (207)
..++.+.-|+.+||++.++++|+..-
T Consensus 28 ~~ee~i~~L~~MGF~~~~a~~AL~~~ 53 (73)
T d1vg5a_ 28 ASEEQIQKLVAMGFDRTQVEVALAAA 53 (73)
T ss_dssp CCHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 68999999999589999999999991
No 84
>d2bcqa2 a.60.12.1 (A:329-385) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]}
Probab=71.70 E-value=0.31 Score=25.84 Aligned_cols=31 Identities=13% Similarity=0.215 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHCC--CCHHHHHH
Q ss_conf 99999850100051011244315--78999999
Q gi|254780553|r 70 QWFMLLQSVQGVGARVAMGVLSR--ITATELVE 100 (207)
Q Consensus 70 ~~F~~Li~V~GIGpK~AL~iLs~--l~~~~l~~ 100 (207)
..-+.+.+|-||||++|-...+. -+.++|..
T Consensus 5 ~~l~~ft~I~GvGp~~A~~l~~~Gi~ti~dLr~ 37 (57)
T d2bcqa2 5 PVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRS 37 (57)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHTTCCSHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHH
T ss_conf 899998622622399999999948988999975
No 85
>d1zeta2 e.8.1.7 (A:27-299) DNA polymerase iota {Human (Homo sapiens) [TaxId: 9606]}
Probab=71.39 E-value=0.8 Score=23.10 Aligned_cols=43 Identities=26% Similarity=0.320 Sum_probs=27.6
Q ss_pred HCCCHHHHHHH----------CCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHH
Q ss_conf 00510112443----------1578999999985156687510457116799999
Q gi|254780553|r 80 GVGARVAMGVL----------SRITATELVESIILQNSKVIAQIPGISMKIASRI 124 (207)
Q Consensus 80 GIGpK~AL~iL----------s~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rI 124 (207)
|||+-.-|+=+ ..+.+++....+.. ..-+..+||||+|+++|+
T Consensus 172 GIa~nk~lAKlAs~~~KP~g~~vi~~~~~~~~l~~--l~pv~~l~GiG~~~~~~L 224 (273)
T d1zeta2 172 GVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHS--LNHIKEIPGIGYKTAKCL 224 (273)
T ss_dssp EEESSHHHHHHHHTSSCSSCEEECCGGGHHHHHTT--CSSGGGSTTCCHHHHHHH
T ss_pred EECCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHC--CCCHHHHCCCCHHHHHHH
T ss_conf 14672899998765024431021033448998703--755677559778999999
No 86
>d1im4a_ e.8.1.7 (A:) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=71.36 E-value=0.88 Score=22.83 Aligned_cols=42 Identities=29% Similarity=0.396 Sum_probs=22.4
Q ss_pred HCCCHHHHHHHC----------CCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHH
Q ss_conf 005101124431----------578999999985156687510457116799999
Q gi|254780553|r 80 GVGARVAMGVLS----------RITATELVESIILQNSKVIAQIPGISMKIASRI 124 (207)
Q Consensus 80 GIGpK~AL~iLs----------~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rI 124 (207)
||||-.-|+=+. .+.++++...+..= -+.++||||+|+++|+
T Consensus 148 GIa~nk~lAKias~~~KP~g~~~i~~~~~~~~L~~l---pi~~i~GIG~~~~~~L 199 (209)
T d1im4a_ 148 GVAPNKILAKIIADKSKPNGLGVIRPTEVQDFLNEL---DIDEIPGIGSVLARRL 199 (209)
T ss_dssp EEESSHHHHHHHHHHTCSSCEEECCGGGHHHHHHTC---BGGGSTTCCHHHHHHH
T ss_pred CCCCCHHHHHHHHHCCCCCEEEEECHHHHHHHHHCC---CCEEECCCHHHHHHHH
T ss_conf 303415658988862698568888899999998479---9336179449999999
No 87
>d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=71.32 E-value=2.6 Score=19.73 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 5899999999679998999999999
Q gi|254780553|r 159 FAINAISALVNLGYGQDQATTAVVS 183 (207)
Q Consensus 159 ~~~d~~~AL~~LGy~~~ea~~ai~~ 183 (207)
.-.+++..|+.+||++..|++|+..
T Consensus 28 ~d~~~v~~L~~MGF~~~~a~~AL~~ 52 (84)
T d1veka_ 28 ANEEIVAQLVSMGFSQLHCQKAAIN 52 (84)
T ss_dssp CCHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9999999999959999999999999
No 88
>d2fmpa2 a.60.12.1 (A:92-148) DNA polymerase beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=70.45 E-value=0.34 Score=25.57 Aligned_cols=29 Identities=24% Similarity=0.291 Sum_probs=21.1
Q ss_pred HHHHHHHHHHCCCHHHHHHHCCC--CHHHHH
Q ss_conf 99998501000510112443157--899999
Q gi|254780553|r 71 WFMLLQSVQGVGARVAMGVLSRI--TATELV 99 (207)
Q Consensus 71 ~F~~Li~V~GIGpK~AL~iLs~l--~~~~l~ 99 (207)
-...|.+|-||||++|-...+.- +.++|.
T Consensus 5 ~l~~l~~I~GvGp~~A~~l~~~Gi~ti~dLr 35 (57)
T d2fmpa2 5 SINFLTRVSGIGPSAARKFVDEGIKTLEDLR 35 (57)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHTTCCSHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHHHCCCCHHHHH
T ss_conf 8998853443149999999994899899997
No 89
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=69.37 E-value=2.3 Score=20.10 Aligned_cols=25 Identities=12% Similarity=0.430 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 5899999999679998999999999
Q gi|254780553|r 159 FAINAISALVNLGYGQDQATTAVVS 183 (207)
Q Consensus 159 ~~~d~~~AL~~LGy~~~ea~~ai~~ 183 (207)
..++.+.-|+.+||++..+++|+..
T Consensus 8 ~d~~~v~~L~~MGF~~~~a~~AL~~ 32 (63)
T d1wjia_ 8 VDEKALKHITEMGFSKEASRQALMD 32 (63)
T ss_dssp SCHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 6999999999969999999999999
No 90
>d1t94a2 e.8.1.7 (A:75-407) DNA polymerase kappa {Human (Homo sapiens) [TaxId: 9606]}
Probab=68.95 E-value=1.1 Score=22.28 Aligned_cols=57 Identities=11% Similarity=0.170 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHH-H-HHHCCCHHHHHHHC----C------C--CHHHHHHHHHCCCHHHHHHCCCCCHHHHHHH
Q ss_conf 677999999985-0-10005101124431----5------7--8999999985156687510457116799999
Q gi|254780553|r 65 SDLDRQWFMLLQ-S-VQGVGARVAMGVLS----R------I--TATELVESIILQNSKVIAQIPGISMKIASRI 124 (207)
Q Consensus 65 ~~~Er~~F~~Li-~-V~GIGpK~AL~iLs----~------l--~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rI 124 (207)
..--+.+|..+- + ==||||-.-||=|. . + +.+++...+..= -++++||||+|+++++
T Consensus 221 ~~IR~~I~~etG~t~SaGIa~NK~LAKLAs~~~KPngq~~i~~~~~~~~~~l~~l---pi~~i~GiG~~~~~~L 291 (333)
T d1t94a2 221 KEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDL---PIRKVSGIGKVTEKML 291 (333)
T ss_dssp HHHHHHHHHHHSCCEEEEEESSHHHHHHHHHHTTTTCEEECCSSHHHHHHHHTTC---BGGGCTTSCHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCCCEECCCHHHHHHHHHCC---CCCCCCCCCHHHHHHH
T ss_conf 9999999997698768767764899999998657675530069999999998279---8346178588999999
No 91
>d1jiha2 e.8.1.7 (A:1-389) DNA polymerase eta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=68.59 E-value=0.99 Score=22.48 Aligned_cols=48 Identities=10% Similarity=0.109 Sum_probs=28.0
Q ss_pred HCCCHHHHHHHC----------CCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 005101124431----------5789999999851566875104571167999999997
Q gi|254780553|r 80 GVGARVAMGVLS----------RITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 (207)
Q Consensus 80 GIGpK~AL~iLs----------~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~EL 128 (207)
||||-.-||=|. .+.++++.+.+...+. -+.++||||.||++++.--|
T Consensus 263 GIa~NK~LAKlAs~~~KPngqtvl~~~~v~~fl~~~~l-pi~ki~GIG~k~~kkL~~~l 320 (389)
T d1jiha2 263 GLSSTKNVCKLASNYKKPDAQTIVKNDCLLDFLDCGKF-EITSFWTLGGVLGKELIDVL 320 (389)
T ss_dssp EEESSHHHHHHHHTTTCSSCEEECCGGGHHHHHTSSSC-CGGGSGGGSSHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCC-CHHHCCCCCHHHHHHHHHHH
T ss_conf 24552899999887449885586678999999972678-72020787889999999984
No 92
>d1gm5a2 b.40.4.9 (A:106-285) RecG "wedge" domain {Thermotoga maritima [TaxId: 2336]}
Probab=64.35 E-value=1.2 Score=21.92 Aligned_cols=16 Identities=19% Similarity=0.189 Sum_probs=7.0
Q ss_pred CCCHHHHHHHHHHHHH
Q ss_conf 9998999999999985
Q gi|254780553|r 171 GYGQDQATTAVVSVLK 186 (207)
Q Consensus 171 Gy~~~ea~~ai~~i~~ 186 (207)
|-+++..++.+.++++
T Consensus 158 gls~~~i~k~I~~~L~ 173 (180)
T d1gm5a2 158 GISQKQMRKIFEENIP 173 (180)
T ss_dssp TBCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
T ss_conf 8499999999999998
No 93
>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=61.35 E-value=2.1 Score=20.32 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=19.4
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 99999996799989999999999
Q gi|254780553|r 162 NAISALVNLGYGQDQATTAVVSV 184 (207)
Q Consensus 162 d~~~AL~~LGy~~~ea~~ai~~i 184 (207)
++++.|+.+||++..+++|+..-
T Consensus 4 ~~v~~L~~MGF~~~~a~~Al~~t 26 (51)
T d2crna1 4 SLLEPLLAMGFPVHTALKALAAT 26 (51)
T ss_dssp SSHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 99999999699999999999997
No 94
>d1jx4a2 e.8.1.7 (A:1-240) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]}
Probab=60.42 E-value=1.9 Score=20.55 Aligned_cols=43 Identities=23% Similarity=0.322 Sum_probs=29.0
Q ss_pred HHCCCHHHHHHHC----------CCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHH
Q ss_conf 0005101124431----------578999999985156687510457116799999
Q gi|254780553|r 79 QGVGARVAMGVLS----------RITATELVESIILQNSKVIAQIPGISMKIASRI 124 (207)
Q Consensus 79 ~GIGpK~AL~iLs----------~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rI 124 (207)
-||||-.-++-+. .++++++...+..- -+..+||||+||++++
T Consensus 142 iGia~nk~lAKlAs~~~KP~g~~vi~~~~~~~~L~~l---pl~~l~GiG~~~~~~L 194 (240)
T d1jx4a2 142 VGISKNKVFAKIAADMAKPNGIKVIDDEEVKRLIREL---DIADVPGIGNITAEKL 194 (240)
T ss_dssp EEEESSHHHHHHHHHHHCSSCEEECCHHHHHHHHHHS---BGGGSTTCCHHHHHHH
T ss_pred EEECCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC---CHHHCCCCCHHHHHHH
T ss_conf 1341316688887500466235303654221025564---2534179977899999
No 95
>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=60.06 E-value=2.5 Score=19.81 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=19.7
Q ss_pred HHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 9999999679998999999999
Q gi|254780553|r 162 NAISALVNLGYGQDQATTAVVS 183 (207)
Q Consensus 162 d~~~AL~~LGy~~~ea~~ai~~ 183 (207)
++++-|+.+||++..+++|+..
T Consensus 14 ~~l~~L~~MGF~~~~a~~AL~~ 35 (51)
T d2cpwa1 14 SALDVLLSMGFPRARAQKALAS 35 (51)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9999999959999999999999
No 96
>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=57.81 E-value=2.5 Score=19.87 Aligned_cols=24 Identities=21% Similarity=0.534 Sum_probs=20.6
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 999999996799989999999999
Q gi|254780553|r 161 INAISALVNLGYGQDQATTAVVSV 184 (207)
Q Consensus 161 ~d~~~AL~~LGy~~~ea~~ai~~i 184 (207)
++++.-|+.+||++..+++|+..-
T Consensus 10 ~~~l~~L~~MGF~~~~a~~AL~~t 33 (64)
T d1whca_ 10 LTALESLIEMGFPRGRAEKALALT 33 (64)
T ss_dssp CCHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 999999999599999999999994
No 97
>d1doqa_ a.60.3.1 (A:) C-terminal domain of RNA polymerase alpha subunit {Thermus thermophilus [TaxId: 274]}
Probab=56.41 E-value=2.8 Score=19.52 Aligned_cols=43 Identities=21% Similarity=0.243 Sum_probs=25.2
Q ss_pred HHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 24431578999999985156687510457116799999999742
Q gi|254780553|r 87 MGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 (207)
Q Consensus 87 L~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~ 130 (207)
...|.......+-+-+. -...-|.++||+|+|+.+.|.--|+.
T Consensus 20 ~N~L~~~gI~tv~dL~~-~s~~dLl~i~n~G~ksl~EI~~~L~~ 62 (69)
T d1doqa_ 20 LHSLKEEGIESVRALLA-LNLKDLKNIPGIGERSLEEIKEALEK 62 (69)
T ss_dssp HHHHHHTTCCSHHHHHH-SCHHHHTTSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHH-CCHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 99998959953999987-88999974889878789999999998
No 98
>d1fr3a_ b.40.6.1 (A:) Molybdate/tungstate binding protein MOP {Sporomusa ovata [TaxId: 2378]}
Probab=53.95 E-value=6.3 Score=17.13 Aligned_cols=47 Identities=19% Similarity=0.339 Sum_probs=37.3
Q ss_pred CEEEEEEEEEECC----EEEEEECCEEEEEECCHHHHHHCC-CCCCEEEEEE
Q ss_conf 2589999996099----799985883238970868898502-4798499999
Q gi|254780553|r 3 GKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFV 49 (207)
Q Consensus 3 ~~i~G~i~~~~~~----~ivi~v~GvGY~i~vs~~~~~~l~-~~g~~v~l~~ 49 (207)
..+.|+|.++.++ .+.++++|.-....++......|. +.|+++...+
T Consensus 7 N~l~g~V~~I~~~~~~~~V~l~~~g~~l~a~IT~~s~~~L~L~~G~~V~a~i 58 (67)
T d1fr3a_ 7 NKLEATVKEIVKGTVMAKIVMDYKGTELVAAITIDSVADLDLVPGDKVTALV 58 (67)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTEEEEEEEEHHHHHHHTCCTTCEEEEEE
T ss_pred CEEEEEEEEEEECCCEEEEEEEECCCEEEEECCHHHHHHCCCCCCCEEEEEE
T ss_conf 0899999999989983999999799099999398999766999999999999
No 99
>d1z96a1 a.5.2.1 (A:295-332) UBA-domain protein mud1 {Schizosaccharomyces pombe [TaxId: 4896]}
Probab=47.97 E-value=6.6 Score=17.02 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=18.2
Q ss_pred HHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 9999996799989999999999
Q gi|254780553|r 163 AISALVNLGYGQDQATTAVVSV 184 (207)
Q Consensus 163 ~~~AL~~LGy~~~ea~~ai~~i 184 (207)
-+.-|+++||++-|+.+++...
T Consensus 5 kiaqlvsmgfdpleaaqaldaa 26 (38)
T d1z96a1 5 KIAQLVSMGFDPLEAAQALDAA 26 (38)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHHHCCCCHHHHHHHHHHH
T ss_conf 8999998278878999887540
No 100
>d1x2ga1 d.224.1.3 (A:247-337) Two-domain LplA, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=45.86 E-value=4.8 Score=17.89 Aligned_cols=47 Identities=17% Similarity=0.056 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC----CCHHHHHHHHHH
Q ss_conf 31589999999967999899999999998516888----898999999999
Q gi|254780553|r 157 PSFAINAISALVNLGYGQDQATTAVVSVLKKEKNI----ADDSQIIRLALR 203 (207)
Q Consensus 157 ~~~~~d~~~AL~~LGy~~~ea~~ai~~i~~~~~~~----~~~eelIk~aLk 203 (207)
+....++..+|.+.-|.+..+..++..+..+.++. .+..++|+.++|
T Consensus 41 ~~~i~~le~~L~G~~y~~~~i~~~l~~~~~~~~~~~~~l~e~~~WL~~~i~ 91 (91)
T d1x2ga1 41 PAPLEALAGRLQGCLYRADMLQQECEALLVDFPEQEKELRELSAWMAGAVR 91 (91)
T ss_dssp CHHHHHHHHHHTTCBSSHHHHHHHHHHTGGGCGGGHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHC
T ss_conf 278999999976998689999999999876587689999999999999739
No 101
>d2e1fa1 a.60.8.1 (A:1142-1235) Werner syndrome ATP-dependent helicase, WRN {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.61 E-value=5.4 Score=17.60 Aligned_cols=55 Identities=11% Similarity=0.074 Sum_probs=35.6
Q ss_pred HHHHHHHHHH-------HHHHCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHH
Q ss_conf 7999999985-------0100051011244315789999999851566875104571167999999
Q gi|254780553|r 67 LDRQWFMLLQ-------SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIM 125 (207)
Q Consensus 67 ~Er~~F~~Li-------~V~GIGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi 125 (207)
.+..+|..|. .-.|+- +-.|++.-...++++ ..-.+...|.+++|+|++.++|-=
T Consensus 11 ~~~~L~~~L~~~R~~~A~~~~ip---~~~I~~d~~L~~ia~-~~P~t~~eL~~I~G~g~~k~~kyG 72 (94)
T d2e1fa1 11 TQIVLYGKLVEARQKHANKMDVP---PAILATNKILVDMAK-MRPTTVENVKRIDGVSEGKAAMLA 72 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSC---HHHHCCHHHHHHHHH-HCCCSHHHHTTSTTCCHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCC---HHEEECHHHHHHHHH-CCCCCHHHHCCCCCCCHHHHHHHH
T ss_conf 89999999999999999976989---720457999999997-299999998379898999999998
No 102
>d1wuda1 a.60.8.1 (A:530-606) HRDC domain from RecQ helicase {Escherichia coli [TaxId: 562]}
Probab=45.08 E-value=5.5 Score=17.53 Aligned_cols=57 Identities=21% Similarity=0.314 Sum_probs=37.7
Q ss_pred HHHHHHHHH-------HHHHCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 999999985-------0100051011244315789999999851566875104571167999999997
Q gi|254780553|r 68 DRQWFMLLQ-------SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 (207)
Q Consensus 68 Er~~F~~Li-------~V~GIGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~EL 128 (207)
|+.+|..|. .-.|+-| -.|++.-...++++. .-.+...|.+++|||.+.++|-=-++
T Consensus 3 d~~L~~~L~~~R~~~A~~~~ip~---~~I~~d~~L~~ia~~-~P~s~~~L~~I~G~g~~k~~~yG~~i 66 (77)
T d1wuda1 3 DRKLFAKLRKLRKSIADESNVPP---YVVFNDATLIEMAEQ-MPITASEMLSVNGVGMRKLERFGKPF 66 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSCH---HHHCCHHHHHHHHHH-CCCSHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCC---CEEECHHHHHHHHHH-CCCCHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 39999999999999999829893---443678999999997-88999998379998999999999999
No 103
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=39.48 E-value=8.6 Score=16.23 Aligned_cols=36 Identities=25% Similarity=0.373 Sum_probs=24.0
Q ss_pred HHHHHHHHCCCH--HHHHHCCCCCHHHHHHHHH-HHHHH
Q ss_conf 999999851566--8751045711679999999-97422
Q gi|254780553|r 96 TELVESIILQNS--KVIAQIPGISMKIASRIMT-ELKGK 131 (207)
Q Consensus 96 ~~l~~aI~~~D~--~~L~~vpGIGkKtA~rIi~-ELk~K 131 (207)
+.|...+.+++. -.|..-||+||.|+-|++. +|..+
T Consensus 25 ~~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la~~l~~~ 63 (224)
T d1sxjb2 25 DRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGR 63 (224)
T ss_dssp HHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCC
T ss_conf 999999986998749998899987054699999997256
No 104
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.90 E-value=8.5 Score=16.26 Aligned_cols=20 Identities=30% Similarity=0.391 Sum_probs=16.5
Q ss_pred HHHHHHHHHCCCCHHHHHHH
Q ss_conf 99999999679998999999
Q gi|254780553|r 161 INAISALVNLGYGQDQATTA 180 (207)
Q Consensus 161 ~d~~~AL~~LGy~~~ea~~a 180 (207)
.+++.-|.+|||++..+-.+
T Consensus 5 ~~aIeRL~~LGF~r~~viqa 24 (44)
T d1oqya2 5 KEAIERLKALGFPESLVIQA 24 (44)
T ss_dssp HHHHHHHHHHTCCSHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHH
T ss_conf 99999999839977789999
No 105
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=38.42 E-value=8 Score=16.46 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=9.3
Q ss_pred HHHHCCCCCHHHHHHHHH
Q ss_conf 751045711679999999
Q gi|254780553|r 109 VIAQIPGISMKIASRIMT 126 (207)
Q Consensus 109 ~L~~vpGIGkKtA~rIi~ 126 (207)
.|+.-||+||.|.-|++.
T Consensus 49 ll~Gp~G~GKTtla~~ia 66 (231)
T d1iqpa2 49 LFAGPPGVGKTTAALALA 66 (231)
T ss_dssp EEESCTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
T ss_conf 997899974879999999
No 106
>d2qy9a1 a.24.13.1 (A:201-284) Signal recognition particle receptor, FtsY {Escherichia coli [TaxId: 562]}
Probab=37.54 E-value=8.7 Score=16.20 Aligned_cols=20 Identities=20% Similarity=0.366 Sum_probs=15.3
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q ss_conf 57116799999999742221
Q gi|254780553|r 114 PGISMKIASRIMTELKGKAI 133 (207)
Q Consensus 114 pGIGkKtA~rIi~ELk~K~~ 133 (207)
.-||.+||++|+-+++.++.
T Consensus 38 aDvG~~tt~~ii~~lk~~~~ 57 (84)
T d2qy9a1 38 ADVGVETTRKIITNLTEGAS 57 (84)
T ss_dssp TTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
T ss_conf 36888999999999999985
No 107
>d1h9ma2 b.40.6.2 (A:74-141) Cytoplasmic molybdate-binding protein ModG {Azotobacter vinelandii [TaxId: 354]}
Probab=34.95 E-value=12 Score=15.20 Aligned_cols=47 Identities=15% Similarity=0.230 Sum_probs=36.8
Q ss_pred CEEEEEEEEEECC----EEEEEE-CCEEEEEECCHHHHHHCC-CCCCEEEEEE
Q ss_conf 2589999996099----799985-883238970868898502-4798499999
Q gi|254780553|r 3 GKIKGNIEGLYED----YVLIDV-QGVCYIIYCPIRTLSCLG-KIGDFCTLFV 49 (207)
Q Consensus 3 ~~i~G~i~~~~~~----~ivi~v-~GvGY~i~vs~~~~~~l~-~~g~~v~l~~ 49 (207)
..+.|+|.++.++ .+.+++ +|.-....++......|. +.|+++...+
T Consensus 6 N~l~g~V~~I~~~~~~~~V~l~~~~g~~l~a~IT~~s~~~L~L~~G~~V~a~i 58 (68)
T d1h9ma2 6 NILTGTVKTIETGAVNAEVTLALQGGTEITSMVTKEAVAELGLKPGASASAVI 58 (68)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTSCEEEEEEEHHHHHHTTCCTTCEEEEEE
T ss_pred HEEEEEEEEEEECCCCEEEEEEECCCCEEEEEECHHHHHHCCCCCCCEEEEEE
T ss_conf 27889999999899868999994999999999188999667999999999999
No 108
>d1hh2p1 b.40.4.5 (P:127-198) S1 domain of NusA {Thermotoga maritima [TaxId: 2336]}
Probab=34.78 E-value=12 Score=15.19 Aligned_cols=49 Identities=10% Similarity=0.236 Sum_probs=36.8
Q ss_pred EEEEEEEEEECCEEEEEECCEEEEEECCHHHHHHCC----CCCCEEEEEEEEEECCC
Q ss_conf 589999996099799985883238970868898502----47984999999997388
Q gi|254780553|r 4 KIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG----KIGDFCTLFVETHMRQD 56 (207)
Q Consensus 4 ~i~G~i~~~~~~~ivi~v~GvGY~i~vs~~~~~~l~----~~g~~v~l~~~~~vrEd 56 (207)
-++|++.....+.+++|.++ -+-.+|.+ ..+| +.|+.++.|+.-.-++.
T Consensus 11 iv~G~V~r~~~~~~~Vdlg~--~eaiLp~~--eqip~E~~~~Gdrik~~i~~V~~~~ 63 (72)
T d1hh2p1 11 VTTAEVIRVMGEWADIRIGK--LETRLPKK--EWIPGEEIKAGDLVKVYIIDVVKTT 63 (72)
T ss_dssp EEEEEEEEECSSEEEEEETT--EEEEEEGG--GSCTTCCCCTTCEEEEEEEEEEEET
T ss_pred EEEEEEEEECCCCEEEEECC--CEEECCHH--HCCCCCCCCCCCEEEEEEEEEEECC
T ss_conf 89999999838989999899--17878989--9598878999998999999998769
No 109
>d2je6i1 b.40.4.5 (I:66-152) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=31.99 E-value=14 Score=14.89 Aligned_cols=51 Identities=20% Similarity=0.299 Sum_probs=37.8
Q ss_pred EEEEEEEEEECCEEEEEECCEEEEEECCHHHHHH-----------CCCCCCEEEEEEEEEECCC
Q ss_conf 5899999960997999858832389708688985-----------0247984999999997388
Q gi|254780553|r 4 KIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSC-----------LGKIGDFCTLFVETHMRQD 56 (207)
Q Consensus 4 ~i~G~i~~~~~~~ivi~v~GvGY~i~vs~~~~~~-----------l~~~g~~v~l~~~~~vrEd 56 (207)
-+.|+|..+.+..+.++.++ +++-++|.+.++. .-+.|+.+...+.-. .++
T Consensus 10 iv~G~V~~i~~~g~fV~i~~-~~~gll~~s~~~~~~~~~~~~~~~~~~~Gd~v~~kV~~v-d~~ 71 (87)
T d2je6i1 10 IVIGLVEDVEIYGWVVDIKA-PYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENF-DRS 71 (87)
T ss_dssp EEEEEEEEECSSEEEEECSS-SSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEE-ETT
T ss_pred EEEEEEEEEECCEEEEEECC-CEEEEEEHHHHCCCEECCCCCCCHHHCCCCEEEEEEEEE-CCC
T ss_conf 99999999989889999489-979998668937720013444101001365699999999-999
No 110
>d1lb2b_ a.60.3.1 (B:) C-terminal domain of RNA polymerase alpha subunit {Escherichia coli [TaxId: 562]}
Probab=31.71 E-value=12 Score=15.23 Aligned_cols=41 Identities=12% Similarity=0.107 Sum_probs=23.4
Q ss_pred HHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 431578999999985156687510457116799999999742
Q gi|254780553|r 89 VLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 (207)
Q Consensus 89 iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~ 130 (207)
.|.......+-+-+.- ...-|.++|++|+|+-+.|.--|+.
T Consensus 20 ~L~~~gI~tvgdL~~~-s~~dLl~~~n~G~KSl~EI~~~L~~ 60 (72)
T d1lb2b_ 20 CLKAEAIHYIGDLVQR-TEVELLKTPNLGKKSLTEIKDVLAS 60 (72)
T ss_dssp HHHHTTCCBHHHHHTC-CHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHC-CHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 8748289479999867-8999976889758689999999998
No 111
>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}
Probab=31.38 E-value=4.3 Score=18.23 Aligned_cols=36 Identities=17% Similarity=0.398 Sum_probs=23.7
Q ss_pred HHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCC-CCCHHHHHHHHHHHHHHH
Q ss_conf 98501000510112443157899999998515668751045-711679999999974222
Q gi|254780553|r 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP-GISMKIASRIMTELKGKA 132 (207)
Q Consensus 74 ~Li~V~GIGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vp-GIGkKtA~rIi~ELk~K~ 132 (207)
+|+-.|||||+.-|.-+. +..+.-.| |||+- |+|.+
T Consensus 300 ~LLl~SGIGp~~~L~~~g---------------I~~v~dlP~Gvg~n--------l~dh~ 336 (391)
T d1gpea1 300 LILEYSGIGLKSVLDQAN---------------VTQLLDLPVGICSM--------MSREL 336 (391)
T ss_dssp HHHHHTTEECHHHHHHTT---------------CCCSEECCTTCTCB--------SCGGG
T ss_pred HHHHHCCCCCHHHHHHCC---------------CCEEEECCCCCCCC--------CCCCC
T ss_conf 899866797388998779---------------98899897541215--------34676
No 112
>d1guta_ b.40.6.1 (A:) Molybdate/tungstate binding protein MOP {Clostridium pasteurianum, MOP II [TaxId: 1501]}
Probab=30.20 E-value=15 Score=14.70 Aligned_cols=47 Identities=26% Similarity=0.379 Sum_probs=36.6
Q ss_pred CEEEEEEEEEECC----EEEEEE-CCEEEEEECCHHHHHHCC-CCCCEEEEEE
Q ss_conf 2589999996099----799985-883238970868898502-4798499999
Q gi|254780553|r 3 GKIKGNIEGLYED----YVLIDV-QGVCYIIYCPIRTLSCLG-KIGDFCTLFV 49 (207)
Q Consensus 3 ~~i~G~i~~~~~~----~ivi~v-~GvGY~i~vs~~~~~~l~-~~g~~v~l~~ 49 (207)
..+.|+|.++.++ .+.++. +|.-....++......|. +.|+++...+
T Consensus 6 N~l~g~V~~I~~~~~~~~V~l~l~~g~~l~a~IT~~s~~~L~L~~G~~V~a~i 58 (67)
T d1guta_ 6 NQLKGKVVGLKKGVVTAEVVLEIAGGNKITSIISLDSVEELGVKEGAELTAVV 58 (67)
T ss_dssp CEEEEEEEEEEECSSEEEEEEEETTSCEEEEEEEHHHHHHHTCCTTCEEEEEC
T ss_pred HEEEEEEEEEEECCCCEEEEEEECCCCEEEEECCHHHHHHCCCCCCCEEEEEE
T ss_conf 47889999999899748999995999999999088999777999999999999
No 113
>d1z3eb1 a.60.3.1 (B:245-311) C-terminal domain of RNA polymerase alpha subunit {Bacillus subtilis [TaxId: 1423]}
Probab=29.21 E-value=12 Score=15.17 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=22.2
Q ss_pred HHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 4315789999999851566875104571167999999997
Q gi|254780553|r 89 VLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 (207)
Q Consensus 89 iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~EL 128 (207)
+|.......+-+-+. -...-|-++|++|+|+.+.|.--|
T Consensus 21 ~Lk~~~I~tv~dL~~-~s~~dLl~~~nfG~kSl~EIk~~L 59 (67)
T d1z3eb1 21 CLKRAGINTVQELAN-KTEEDMMKVRNLGRKSLEEVKAKL 59 (67)
T ss_dssp HHHHTTCCBHHHHHT-SCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHH-CCHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 998939957999987-889999757897660499999999
No 114
>d1wrka1 a.39.1.5 (A:4-85) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}
Probab=28.53 E-value=16 Score=14.51 Aligned_cols=46 Identities=11% Similarity=0.135 Sum_probs=28.6
Q ss_pred HHHHHHHHHHCCCCHH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 8999999996799989--999999999851688889899999999974
Q gi|254780553|r 160 AINAISALVNLGYGQD--QATTAVVSVLKKEKNIADDSQIIRLALRAI 205 (207)
Q Consensus 160 ~~d~~~AL~~LGy~~~--ea~~ai~~i~~~~~~~~~~eelIk~aLk~L 205 (207)
..|+..+|.+||+... +++..+..+..+.....+.++-+....|++
T Consensus 35 ~~el~~~l~~lg~~~t~~el~~~i~~~D~d~~G~I~f~eFl~im~~km 82 (82)
T d1wrka1 35 TKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRSM 82 (82)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHTTCTTCCSSBCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHC
T ss_conf 899999998728999889999999994789997473999999998549
No 115
>d1okkd1 a.24.13.1 (D:21-78) Signal recognition particle receptor, FtsY {Thermus aquaticus [TaxId: 271]}
Probab=28.44 E-value=13 Score=14.94 Aligned_cols=19 Identities=11% Similarity=0.408 Sum_probs=14.5
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q ss_conf 5711679999999974222
Q gi|254780553|r 114 PGISMKIASRIMTELKGKA 132 (207)
Q Consensus 114 pGIGkKtA~rIi~ELk~K~ 132 (207)
.-+|.+|+++|+-+|++++
T Consensus 22 ADvGv~tt~~ii~~Lr~~~ 40 (58)
T d1okkd1 22 ADVGLSATEEILQEVRASG 40 (58)
T ss_dssp TTCCHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHH
T ss_conf 1367899999999999999
No 116
>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}
Probab=27.40 E-value=5.6 Score=17.47 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=23.0
Q ss_pred HHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHH
Q ss_conf 985010005101124431578999999985156687510457116799
Q gi|254780553|r 74 LLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 (207)
Q Consensus 74 ~Li~V~GIGpK~AL~iLs~l~~~~l~~aI~~~D~~~L~~vpGIGkKtA 121 (207)
.|+-.|||||+--|.=++ + ..+.-.||||+-.-
T Consensus 264 ~LLl~SGIGp~~~L~~~g-I--------------~~~~dlPgVG~NL~ 296 (351)
T d1ju2a1 264 QLLLLSGVGPESYLSSLN-I--------------PVVLSHPYVGQCLV 296 (351)
T ss_dssp HHHHHTTEECHHHHHHTT-C--------------CCSEECTTTTESCB
T ss_pred HHHHHCCCCCHHHHHHCC-C--------------CEECCCCCCCCCCC
T ss_conf 999876799989998769-9--------------74603987563410
No 117
>d1ci4a_ a.60.5.1 (A:) Barrier-to-autointegration factor, BAF {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.80 E-value=11 Score=15.56 Aligned_cols=19 Identities=16% Similarity=0.394 Sum_probs=14.8
Q ss_pred HHHHHCCCCCHHHHHHHHH
Q ss_conf 8751045711679999999
Q gi|254780553|r 108 KVIAQIPGISMKIASRIMT 126 (207)
Q Consensus 108 ~~L~~vpGIGkKtA~rIi~ 126 (207)
+..+.+||||+..++|+.-
T Consensus 18 K~V~~l~GIG~~lg~~L~~ 36 (89)
T d1ci4a_ 18 KPVGSLAGIGEVLGKKLEE 36 (89)
T ss_dssp CCGGGSTTCCHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHH
T ss_conf 9645168863899889998
No 118
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.35 E-value=19 Score=13.89 Aligned_cols=18 Identities=11% Similarity=0.137 Sum_probs=9.6
Q ss_pred HHHHCCCCCHHHHHHHHH
Q ss_conf 751045711679999999
Q gi|254780553|r 109 VIAQIPGISMKIASRIMT 126 (207)
Q Consensus 109 ~L~~vpGIGkKtA~rIi~ 126 (207)
.|..-||+||.|+-|++.
T Consensus 39 Ll~Gp~G~GKttl~~~la 56 (227)
T d1sxjc2 39 LFYGPPGTGKTSTIVALA 56 (227)
T ss_dssp EEECSSSSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
T ss_conf 998899877558999999
No 119
>d2ba0a1 b.40.4.5 (A:53-135) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=23.27 E-value=19 Score=13.88 Aligned_cols=51 Identities=18% Similarity=0.161 Sum_probs=34.4
Q ss_pred EEEEEEEEEECCEEEEEECCEEEEEECCHHHHH---------HCCCCCCEEEEEEEEEECCC
Q ss_conf 589999996099799985883238970868898---------50247984999999997388
Q gi|254780553|r 4 KIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLS---------CLGKIGDFCTLFVETHMRQD 56 (207)
Q Consensus 4 ~i~G~i~~~~~~~ivi~v~GvGY~i~vs~~~~~---------~l~~~g~~v~l~~~~~vrEd 56 (207)
.+.|++..+.++.+.++.++ ++.-+++.+-++ ..-+.|+.+...+... .++
T Consensus 8 ~V~G~V~~v~~~g~~V~i~~-~~~g~l~~se~s~~~~~~~~~~~~~vGd~V~~kV~~v-d~~ 67 (83)
T d2ba0a1 8 VVIGIIREVAANGWAVDIYS-PYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNI-DPK 67 (83)
T ss_dssp EEEEEEEEECSSEEEEECSS-SSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEE-CTT
T ss_pred EEEEEEEEEECCEEEEECCC-CEEEEEECCCCCCCCCCCCHHHHCCCCCEEEEEEEEE-CCC
T ss_conf 99999999979889996489-9468876203046333357335224566799999999-999
No 120
>d1toaa_ c.92.2.2 (A:) Periplasmic zinc binding protein TroA {Treponema pallidum [TaxId: 160]}
Probab=22.87 E-value=20 Score=13.83 Aligned_cols=38 Identities=16% Similarity=0.118 Sum_probs=19.3
Q ss_pred HHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999985156687510457116799999999742221
Q gi|254780553|r 96 TELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAI 133 (207)
Q Consensus 96 ~~l~~aI~~~D~~~L~~vpGIGkKtA~rIi~ELk~K~~ 133 (207)
.++++.|..++++.+-.-|....|.+++|.-++..|..
T Consensus 200 ~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~~~k~~ 237 (277)
T d1toaa_ 200 QELAAFIAQRKLPAIFIESSIPHKNVEALRDAVQARGH 237 (277)
T ss_dssp HHHHHHHHHTTCSEEEEETTSCTHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCCE
T ss_conf 99999998517708995477881899999998578841
No 121
>d1vmaa1 a.24.13.1 (A:1-81) Signal recognition particle receptor, FtsY {Thermotoga maritima [TaxId: 2336]}
Probab=22.57 E-value=20 Score=13.84 Aligned_cols=15 Identities=13% Similarity=0.361 Sum_probs=7.2
Q ss_pred CCHHHHHHHHHHHHH
Q ss_conf 116799999999742
Q gi|254780553|r 116 ISMKIASRIMTELKG 130 (207)
Q Consensus 116 IGkKtA~rIi~ELk~ 130 (207)
||.+||++|+-.|+.
T Consensus 48 vGv~tt~~Ii~~lr~ 62 (81)
T d1vmaa1 48 VGVETTEYILERLEE 62 (81)
T ss_dssp CCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHH
T ss_conf 789999999999996
No 122
>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.86 E-value=21 Score=13.70 Aligned_cols=38 Identities=11% Similarity=0.232 Sum_probs=26.9
Q ss_pred HHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 96799989999999999851688889899999999974
Q gi|254780553|r 168 VNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 (207)
Q Consensus 168 ~~LGy~~~ea~~ai~~i~~~~~~~~~~eelIk~aLk~L 205 (207)
.+.|+....+...+.+-.+.+.+..+.+++++.|++.|
T Consensus 160 ~a~G~gs~~~~~~Le~~~~~~~~~~t~~e~i~lal~al 197 (241)
T d1rypd_ 160 QTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSL 197 (241)
T ss_dssp EEESTTHHHHHHHHHTTCCTTSCCCSHHHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 99991789999999986211567888999999999999
No 123
>d1h9ma1 b.40.6.2 (A:1-73) Cytoplasmic molybdate-binding protein ModG {Azotobacter vinelandii [TaxId: 354]}
Probab=20.47 E-value=22 Score=13.51 Aligned_cols=48 Identities=21% Similarity=0.190 Sum_probs=37.5
Q ss_pred CEEEEEEEEEECC----EEEEEE-CCEEEEEECCHHHHHHCC-CCCCEEEEEEE
Q ss_conf 2589999996099----799985-883238970868898502-47984999999
Q gi|254780553|r 3 GKIKGNIEGLYED----YVLIDV-QGVCYIIYCPIRTLSCLG-KIGDFCTLFVE 50 (207)
Q Consensus 3 ~~i~G~i~~~~~~----~ivi~v-~GvGY~i~vs~~~~~~l~-~~g~~v~l~~~ 50 (207)
..+.|+|.++.++ .+.+++ +|.-....++......|. +.|+++...+.
T Consensus 7 N~l~g~V~~I~~~~~~~~V~l~~~~g~~l~A~IT~~S~~~L~L~~G~~V~a~iK 60 (73)
T d1h9ma1 7 NVFKGTVSALKEGAVNAEVDILLGGGDKLAAVVTLESARSLQLAAGKEVVAVVK 60 (73)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEESSSCEEEEEEEHHHHHHTTCCTTCEEEEEEC
T ss_pred CEEEEEEEEEEECCCCEEEEEEECCCCEEEEECCHHHHHHCCCCCCCEEEEEEE
T ss_conf 199999999996899799999989998999992889996679999999999997
No 124
>d1ttea1 a.5.2.1 (A:161-215) Ubiquitin-protein ligase ubc1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.20 E-value=22 Score=13.47 Aligned_cols=28 Identities=11% Similarity=0.223 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 1589999999967999899999999998
Q gi|254780553|r 158 SFAINAISALVNLGYGQDQATTAVVSVL 185 (207)
Q Consensus 158 ~~~~d~~~AL~~LGy~~~ea~~ai~~i~ 185 (207)
.+..+.+.-..++||++.-+-.++++.-
T Consensus 7 Gid~~~V~~f~~mGF~rdKvI~VLrrlg 34 (55)
T d1ttea1 7 GIDHDLIDEFESQGFEKDKIVEVLRRLG 34 (55)
T ss_dssp CCSHHHHHHHHHHTCCHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHCCCCCHHHHHHHHHHC
T ss_conf 7889999999983898012999999968
Done!