BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780553|ref|YP_003064966.1| Holliday junction DNA helicase
RuvA [Candidatus Liberibacter asiaticus str. psy62]
         (207 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|89094837|ref|ZP_01167770.1| Holliday junction DNA helicase RuvA [Oceanospirillum sp. MED92]
 gi|89080892|gb|EAR60131.1| Holliday junction DNA helicase RuvA [Oceanospirillum sp. MED92]
          Length = 210

 Score =  196 bits (497), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 66/208 (31%), Positives = 104/208 (50%), Gaps = 3/208 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++KG +       ++IDVQGV Y +   + T   L ++G   TLF    +R+D   L
Sbjct: 1   MIGRLKGELIEKQPPQLVIDVQGVGYEVEASMNTFYRLPELGSTLTLFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L    GVG ++A+ +LS I+ +E V  +   ++  + ++PG+  K 
Sbjct: 61  YGFYDKEERSLFRTLIKANGVGPKLAITILSGISTSEFVRCVNDGDTASLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQD---MSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A R++ E+K K  +L      D    +    + A           A SALV LGY   QA
Sbjct: 121 AERLIVEMKDKIKALGLETSGDFELSAADGPDMASFEPQADNRAEAESALVALGYKPVQA 180

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
           T A+  V K   + A   ++IR ALR++
Sbjct: 181 TKAIEQVFKTLGSSASSEELIRHALRSM 208


>gi|262394694|ref|YP_003286548.1| holliday junction DNA helicase RuvA [Vibrio sp. Ex25]
 gi|262338288|gb|ACY52083.1| holliday junction DNA helicase RuvA [Vibrio sp. Ex25]
          Length = 203

 Score =  193 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 99/205 (48%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLI+V G+ Y +  P+     L  +G+   ++    +R+D   L
Sbjct: 1   MIGRLRGTLIEKQPPEVLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TAT+ V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVKERALFREVIKANGVGPKLGLGILSGMTATQFVTCVEHEDVSTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +     +                 +  +    AISAL+ LGY   QA+  
Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPFTDAAPADSGATSNNAEEEAISALLALGYKPTQASKV 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  + K         Q+IR AL+++
Sbjct: 181 VSQIAK---PDMSSEQMIREALKSM 202


>gi|289674670|ref|ZP_06495560.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           syringae FF5]
 gi|302187157|ref|ZP_07263830.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           syringae 642]
 gi|330950609|gb|EGH50869.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae Cit 7]
          Length = 202

 Score =  193 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 115/205 (56%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G++      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGSLAEKQPPHLVLDVNGVGYEVEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K 
Sbjct: 61  YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  S +    + V+        + S   +A+SAL++LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNQAEPVASAESDAVSALISLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++ +K+ + AD   +IR AL+ +
Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201


>gi|170723160|ref|YP_001750848.1| Holliday junction DNA helicase RuvA [Pseudomonas putida W619]
 gi|229560119|sp|B1JD71|RUVA_PSEPW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|169761163|gb|ACA74479.1| Holliday junction DNA helicase RuvA [Pseudomonas putida W619]
          Length = 205

 Score =  192 bits (488), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 112/205 (54%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      +++IDV GV Y +  P+ TL  L K+G+  T+     +R+D   L
Sbjct: 1   MIGRLRGTLAEKQPPHLIIDVNGVGYELEVPMTTLYRLPKVGETVTVHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S + A ELV  +  Q++  + ++PG+  K 
Sbjct: 61  YGFHEKRERELFRELIRLNGVGPKLALALMSGLEADELVRCVQAQDTSALVRVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +         + V+     +    +   +A+SALV+LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAW-ETSPAMFTLVSDGPVPVSGASTAEADAVSALVSLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++  K+K      ++IR +L+ +
Sbjct: 180 VSAI--KDKAGLSSEELIRRSLKGM 202


>gi|66044657|ref|YP_234498.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           syringae B728a]
 gi|75502953|sp|Q4ZWL2|RUVA_PSEU2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|63255364|gb|AAY36460.1| DNA recombination protein, RuvA [Pseudomonas syringae pv. syringae
           B728a]
 gi|330968891|gb|EGH68957.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 202

 Score =  192 bits (487), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 114/205 (55%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G++      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGSLAEKQPPHLVLDVNGVGYEVEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K 
Sbjct: 61  YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +    +    + V+        + S   +A+SAL++LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAW-EALPGTFTLVSNGPNQAEPVASAESDAVSALISLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++ +K+ + AD   +IR AL+ +
Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201


>gi|26987951|ref|NP_743376.1| Holliday junction DNA helicase RuvA [Pseudomonas putida KT2440]
 gi|148546488|ref|YP_001266590.1| Holliday junction DNA helicase RuvA [Pseudomonas putida F1]
 gi|37999646|sp|Q88NJ1|RUVA_PSEPK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230586|sp|A5VZU6|RUVA_PSEP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|24982663|gb|AAN66840.1|AE016312_11 Holliday junction DNA helicase RuvA [Pseudomonas putida KT2440]
 gi|148510546|gb|ABQ77406.1| Holliday junction DNA helicase subunit RuvA [Pseudomonas putida F1]
 gi|313497567|gb|ADR58933.1| RuvA [Pseudomonas putida BIRD-1]
          Length = 205

 Score =  192 bits (487), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 112/205 (54%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      +++IDV GV Y +  P+ TL  L K+G+  T+     +R+D   L
Sbjct: 1   MIGRLRGTLAEKQPPHLIIDVNGVGYELEVPMTTLYRLPKVGETVTVHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + ++PG+  K 
Sbjct: 61  YGFAEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALVRVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +         + V+     + S  S   +A+SALV+LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAW-ETSPAMFTLVSDGPLPVASESSAEADAVSALVSLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++  K+K      ++IR +L+ +
Sbjct: 180 IAAI--KDKAGLSSEELIRRSLKGM 202


>gi|70732089|ref|YP_261845.1| Holliday junction DNA helicase RuvA [Pseudomonas fluorescens Pf-5]
 gi|90135592|sp|Q4K7D8|RUVA_PSEF5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|68346388|gb|AAY93994.1| Holliday junction DNA helicase RuvA [Pseudomonas fluorescens Pf-5]
          Length = 202

 Score =  191 bits (486), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 109/205 (53%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV G+ Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGTLAEKQPPHLILDVNGLGYEVEVPMTTLYRLPSVGEPLTLHTHLVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R +F  L  + GVG ++A+ ++S +   ELV  +  Q++  + ++PG+  K 
Sbjct: 61  YGFASKRERDFFRELIRLNGVGPKLALALMSSLEVDELVRCVQAQDTSALTKVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +    V    + V  +      + S   +A+SAL++LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAW-EAVPSMFALVPNQPDAPAPVASAESDAVSALISLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++  K         +IR AL+ +
Sbjct: 180 VSAIKDK---GLSSEDMIRRALKGM 201


>gi|85712318|ref|ZP_01043369.1| Holliday junction resolvasome, DNA-binding subunit [Idiomarina
           baltica OS145]
 gi|85693945|gb|EAQ31892.1| Holliday junction resolvasome, DNA-binding subunit [Idiomarina
           baltica OS145]
          Length = 206

 Score =  191 bits (486), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 62/209 (29%), Positives = 100/209 (47%), Gaps = 6/209 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +       VL+DVQGV Y I  P+     L   G+  TL     +R+D   L
Sbjct: 1   MIGQIRGTLVSKQPPEVLVDVQGVGYEIQLPMTCFYQLPATGEPVTLVTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F LL   QGVG ++A+ +LS + A E V ++   +   + ++PG+  K 
Sbjct: 61  YGFNSLAERSLFRLLIKTQGVGPKLALAILSGMNADEFVWAVNQNDVSRLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCV---NKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A R++ E++ +                  N     +        +A+SAL+ LGY   QA
Sbjct: 121 AERLVIEMRDRLKDWQGSSTPATDAAPLDNVSGDALVHPADARNDALSALLALGYKPVQA 180

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
             A+ +V ++         +IR AL+ +S
Sbjct: 181 EKALKAVYQQ---GESSETLIRSALKQLS 206


>gi|104783073|ref|YP_609571.1| Holliday junction DNA helicase RuvA [Pseudomonas entomophila L48]
 gi|123079106|sp|Q1I6E8|RUVA_PSEE4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|95112060|emb|CAK16787.1| holliday junction helicase subunit A [Pseudomonas entomophila L48]
          Length = 205

 Score =  191 bits (486), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 113/205 (55%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      +++IDV GV Y +  P+ TL  L K+G+  T+     +R+D   L
Sbjct: 1   MIGRLRGTLAEKQPPHLIIDVNGVGYELEVPMTTLYRLPKVGEPVTVHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++ V+ ++PG+  K 
Sbjct: 61  YGFAEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDASVLVRVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +         + V+     + S  S   +A+SALV+LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAW-ETSPAMFTLVSDGPLPVASESSAEADAVSALVSLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++  K+K      ++IR +L+ +
Sbjct: 180 IAAI--KDKAGLSSEELIRRSLKGM 202


>gi|91227614|ref|ZP_01261918.1| Holliday junction DNA helicase motor protein [Vibrio alginolyticus
           12G01]
 gi|91188507|gb|EAS74800.1| Holliday junction DNA helicase motor protein [Vibrio alginolyticus
           12G01]
          Length = 203

 Score =  191 bits (486), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 99/205 (48%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLI+V G+ Y +  P+     L  +G+   ++    +R+D   L
Sbjct: 1   MIGRLRGILIEKQPPEVLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TAT+ V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVKERALFREVIKANGVGPKLGLGILSGMTATQFVTCVEHEDVSTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +     +                 +  +    AISAL+ LGY   QA+  
Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPFTDAAPADSGATSNNAEEEAISALLALGYKPTQASKV 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  + K         Q+IR AL+++
Sbjct: 181 VSQIAK---PDMSSEQMIREALKSM 202


>gi|167035195|ref|YP_001670426.1| Holliday junction DNA helicase RuvA [Pseudomonas putida GB-1]
 gi|189045762|sp|B0KTJ3|RUVA_PSEPG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166861683|gb|ABZ00091.1| Holliday junction DNA helicase RuvA [Pseudomonas putida GB-1]
          Length = 205

 Score =  191 bits (486), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 112/205 (54%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      +++IDV GV Y +  P+ TL  L K+G+  T+     +R+D   L
Sbjct: 1   MIGRLRGTLAEKQPPHLIIDVNGVGYELEVPMTTLYRLPKVGEAVTVHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + ++PG+  K 
Sbjct: 61  YGFAEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALVRVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +         + V+     + S  S   +A+SALV+LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAW-ETSPAMFTLVSDGPLPVASESSAEADAVSALVSLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++  K+K      ++IR +L+ +
Sbjct: 180 IAAI--KDKAGLSSEELIRRSLKGM 202


>gi|331016439|gb|EGH96495.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 202

 Score =  191 bits (486), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 64/205 (31%), Positives = 116/205 (56%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGAIAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K 
Sbjct: 61  YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  S +    + V+    H+  + S   +A+SAL++LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNHVDPVASAESDAVSALISLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++ +K+ + AD   +IR AL+ +
Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201


>gi|28871123|ref|NP_793742.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213969185|ref|ZP_03397324.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           tomato T1]
 gi|301384820|ref|ZP_07233238.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           tomato Max13]
 gi|302063526|ref|ZP_07255067.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           tomato K40]
 gi|302130610|ref|ZP_07256600.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|37999572|sp|Q87Y34|RUVA_PSESM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|28854373|gb|AAO57437.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213926183|gb|EEB59739.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           tomato T1]
          Length = 202

 Score =  191 bits (485), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 64/205 (31%), Positives = 115/205 (56%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGAIAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K 
Sbjct: 61  YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  S +    + V+    H   + S   +A+SAL++LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNHADPVASAESDAVSALISLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++ +K+ + AD   +IR AL+ +
Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201


>gi|254281679|ref|ZP_04956647.1| Holliday junction DNA helicase RuvA [gamma proteobacterium NOR51-B]
 gi|219677882|gb|EED34231.1| Holliday junction DNA helicase RuvA [gamma proteobacterium NOR51-B]
          Length = 207

 Score =  191 bits (485), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 104/206 (50%), Gaps = 4/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +   +   +++DV GV Y I  P+ TL  L  IG   +L     +R+D  +L
Sbjct: 1   MIGRIRGILAAKHPPEIVVDVGGVGYEIQVPMTTLFQLPDIGTEVSLVTHFVVREDAQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+S++DR+ F  L  V GVG R+A+ +LS + A E    +   +   +  +PG+  K 
Sbjct: 61  FGFVSEVDRRLFRELIKVSGVGPRLALTLLSGMDAREFSRCLQRDDVASLVALPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ KA      +  +M+                  A  ALV LGY    A+  
Sbjct: 121 AERLLVEMRDKAGKWLGELSPEMATTVGVAPGPAP-DDAREEAEQALVALGYKLADASRL 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V SV   + + A   Q+IR AL+A +
Sbjct: 180 VASV---DDSGASSEQLIRRALQAAA 202


>gi|163802051|ref|ZP_02195947.1| Holliday junction DNA helicase motor protein [Vibrio sp. AND4]
 gi|159174192|gb|EDP59000.1| Holliday junction DNA helicase motor protein [Vibrio sp. AND4]
          Length = 204

 Score =  191 bits (484), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 102/206 (49%), Gaps = 4/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLI+V G+ Y +  P+     L  +G+   ++    +R+D   L
Sbjct: 1   MIGRLRGTLLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TA++ V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDISTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +     +  +    +      +   +  +    AISAL+ LGY   QA+ 
Sbjct: 121 AERLVVEMKDRLKGWSAGDLFTPFTDAAPADSGSAASNNAEEEAISALLALGYKPTQASK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            V  + K         Q+IR AL+++
Sbjct: 181 VVSQIAK---PDMTSEQLIREALKSM 203


>gi|330959265|gb|EGH59525.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 202

 Score =  191 bits (484), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 115/205 (56%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGFLAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGEPVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K 
Sbjct: 61  YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  S +    + V+     +  + S   +A+SAL++LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAWES-LPGTFALVSSGPNQLEPVASAESDAVSALISLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++ +K+ + AD   +IR AL+ +
Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201


>gi|71734074|ref|YP_275913.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|90135568|sp|Q48FC4|RUVA_PSE14 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|71554627|gb|AAZ33838.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320323052|gb|EFW79141.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329676|gb|EFW85665.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330877979|gb|EGH12128.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330892240|gb|EGH24901.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. mori
           str. 301020]
 gi|330988969|gb|EGH87072.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 202

 Score =  191 bits (484), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 115/205 (56%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G++      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGSLAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K 
Sbjct: 61  YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  S +    + V+        + S   +A+SAL++LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNQAEPVASAESDAVSALISLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++ +K+ + AD   +IR AL+ +
Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201


>gi|289626496|ref|ZP_06459450.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289650942|ref|ZP_06482285.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330868612|gb|EGH03321.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 202

 Score =  190 bits (483), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 115/205 (56%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G++      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGSLAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K 
Sbjct: 61  YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  S +    + V+        + S   +A+SAL++LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNQAEPVASAETDAVSALISLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++ +K+ + AD   +IR AL+ +
Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201


>gi|237800218|ref|ZP_04588679.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331023075|gb|EGI03132.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 202

 Score =  190 bits (483), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 115/205 (56%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G+I      ++++DV GV Y +  P+ TL  L  +G+  TL+    +R+D   L
Sbjct: 1   MIGRLRGSIAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGETVTLYTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K 
Sbjct: 61  YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +    +    + V+        + S   +A+SAL++LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAW-EALPGTFALVSNGPNQAEPVASAESDAVSALISLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++ +K+ + AD   +IR AL+ +
Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201


>gi|330872653|gb|EGH06802.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 202

 Score =  190 bits (483), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 115/205 (56%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGAIAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGEIVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K 
Sbjct: 61  YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  S +    + V+    H   + S   +A+SAL++LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNHAEPVASAESDAVSALISLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +V +K+ + AD   +IR AL+ +
Sbjct: 180 VSAVKEKDLSSAD---LIRRALKGM 201


>gi|298488209|ref|ZP_07006245.1| Holliday junction DNA helicase RuvA [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157267|gb|EFH98351.1| Holliday junction DNA helicase RuvA [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 202

 Score =  190 bits (483), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 115/205 (56%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G++      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGSLAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K 
Sbjct: 61  YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDASALTRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  S +    + V+        + S   +A+SAL++LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNQAEPVASAESDAVSALISLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++ +K+ + AD   +IR AL+ +
Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201


>gi|86146483|ref|ZP_01064806.1| Holliday junction DNA helicase motor protein [Vibrio sp. MED222]
 gi|218709101|ref|YP_002416722.1| Holliday junction DNA helicase RuvA [Vibrio splendidus LGP32]
 gi|254767400|sp|B7VMI3|RUVA_VIBSL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|85835746|gb|EAQ53881.1| Holliday junction DNA helicase motor protein [Vibrio sp. MED222]
 gi|218322120|emb|CAV18233.1| Holliday junction DNA helicase ruvA [Vibrio splendidus LGP32]
          Length = 203

 Score =  190 bits (483), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 104/205 (50%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI+V GV Y +  P+     L  +G+   ++    +R+D   L
Sbjct: 1   MIGRLRGTLIEKQPPELLIEVSGVGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TA++ V+S+  ++   + ++PG+  K 
Sbjct: 61  YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVQSVEREDISTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +     +      +        + ++      A+SAL+ LGY   QA+  
Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPATDAAPMDSMPTVHDAEEEAVSALLALGYKPTQASKV 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V K   +     Q+IR AL+++
Sbjct: 181 VSQVAK---DGMTSEQLIREALKSM 202


>gi|257487010|ref|ZP_05641051.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331009348|gb|EGH89404.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 202

 Score =  190 bits (482), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 116/205 (56%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G++      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGSLAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K 
Sbjct: 61  YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  S +    + V+       S+ S   +A+SAL++LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNQAESVASAESDAVSALISLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++ +K+ + AD   +IR AL+ +
Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201


>gi|330964824|gb|EGH65084.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 202

 Score =  190 bits (482), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 64/205 (31%), Positives = 115/205 (56%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGAIAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGEIVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K 
Sbjct: 61  YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  S +    + V+    H   + S   +A+SAL++LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNHAEPVASAESDAVSALISLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++ +K+ + AD   +IR AL+ +
Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201


>gi|157145359|ref|YP_001452679.1| Holliday junction DNA helicase RuvA [Citrobacter koseri ATCC
           BAA-895]
 gi|166230539|sp|A8AFI0|RUVA_CITK8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|157082564|gb|ABV12242.1| hypothetical protein CKO_01099 [Citrobacter koseri ATCC BAA-895]
          Length = 203

 Score =  190 bits (482), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 100/204 (49%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++V GV Y ++ P+     L + G   T+F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLEVGGVGYEVHMPMTCFYELPESGKEATVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEPAALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + +     A    +IR ALRA
Sbjct: 181 VSKIAR---PDASSETLIREALRA 201


>gi|307826389|ref|ZP_07656591.1| Holliday junction DNA helicase RuvA [Methylobacter tundripaludum
           SV96]
 gi|307732566|gb|EFO03441.1| Holliday junction DNA helicase RuvA [Methylobacter tundripaludum
           SV96]
          Length = 203

 Score =  190 bits (482), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 62/203 (30%), Positives = 101/203 (49%), Gaps = 4/203 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +      ++++DV GV Y +  P+ T   L  IG   TL     +R+D   L
Sbjct: 1   MIGFLRGKLAHKSPPFLMLDVNGVGYEVEAPMTTFYDLPAIGSEITLHTHLVVREDAHIL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ DR  F  L  V GVG ++A+ +LS  +A E    I   +++ + ++PG+  K 
Sbjct: 61  FGFSTEADRSMFRTLIKVNGVGPKLALTILSGQSAEEFHRCIHNNDTQALVRLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ +   L+       + V      I  + +    AISAL +LGY    A   
Sbjct: 121 AERLVIEMRDRLPDLTDSFDSGGTSVAGVD-KIQPVNNPKQEAISALCSLGYKPLDAGKM 179

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V ++  + K       IIRLAL+
Sbjct: 180 VQNISAEGK---SCEDIIRLALQ 199


>gi|212212080|ref|YP_002303016.1| Holliday junction DNA helicase RuvA [Coxiella burnetii CbuG_Q212]
 gi|226698728|sp|B6IYU3|RUVA_COXB2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|212010490|gb|ACJ17871.1| holliday junction DNA helicase [Coxiella burnetii CbuG_Q212]
          Length = 200

 Score =  189 bits (480), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 100/205 (48%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G I      Y+L++V GV Y I  P+ T   L +  +   L+    +R+D   L
Sbjct: 1   MIGHLRGIIVEKQPPYLLLEVAGVGYEITAPLSTFYHLPEPQEEILLYTHLIVREDAHTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +D +R+ F  L  V GVG ++A+ +LS I   E V  ++ QN   + +IPG+  K 
Sbjct: 61  YGFHNDHERRLFRALIKVNGVGPKLALAILSGIGPDEFVHCVLNQNIDQLVRIPGVGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E K +            +     +    S      +AISAL+ LGY   +A  A
Sbjct: 121 AERLVIETKDRLSRWH------TNDTPSPEGLRSSNTQPTQDAISALMALGYKPQEAKRA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++ K          +IRLAL+ +
Sbjct: 175 IDAIQK---PDLSAETLIRLALKQM 196


>gi|157161330|ref|YP_001458648.1| Holliday junction DNA helicase RuvA [Escherichia coli HS]
 gi|170019794|ref|YP_001724748.1| Holliday junction DNA helicase RuvA [Escherichia coli ATCC 8739]
 gi|188494515|ref|ZP_03001785.1| Holliday junction DNA helicase RuvA [Escherichia coli 53638]
 gi|193069860|ref|ZP_03050809.1| Holliday junction DNA helicase RuvA [Escherichia coli E110019]
 gi|167012659|sp|A8A161|RUVA_ECOHS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189045753|sp|B1J0M7|RUVA_ECOLC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|157067010|gb|ABV06265.1| Holliday junction DNA helicase RuvA [Escherichia coli HS]
 gi|169754722|gb|ACA77421.1| Holliday junction DNA helicase RuvA [Escherichia coli ATCC 8739]
 gi|188489714|gb|EDU64817.1| Holliday junction DNA helicase RuvA [Escherichia coli 53638]
 gi|192956760|gb|EDV87214.1| Holliday junction DNA helicase RuvA [Escherichia coli E110019]
 gi|309702085|emb|CBJ01399.1| holliday junction ATP-dependent DNA helicase [Escherichia coli ETEC
           H10407]
 gi|323937119|gb|EGB33399.1| Holliday junction DNA helicase RuvA [Escherichia coli E1520]
          Length = 203

 Score =  189 bits (480), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 99/204 (48%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATNDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + +     A    +IR ALRA
Sbjct: 181 VSKIAR---PDASSETLIREALRA 201


>gi|84388519|ref|ZP_00991066.1| Holliday junction DNA helicase motor protein [Vibrio splendidus
           12B01]
 gi|84377068|gb|EAP93939.1| Holliday junction DNA helicase motor protein [Vibrio splendidus
           12B01]
          Length = 203

 Score =  189 bits (480), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 103/205 (50%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI+V GV Y +  P+     L  +G+   ++    +R+D   L
Sbjct: 1   MIGRLRGTLIEKQPPELLIEVSGVGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TA++ V+S+  ++   + ++PG+  K 
Sbjct: 61  YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVQSVEREDISTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +     +      +        + ++      A+SAL+ LGY   QA+  
Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPATDAAPMDSMPTVHDAEEEAVSALLALGYKPTQASKV 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V K         Q+IR AL+++
Sbjct: 181 VAQVAK---GGMTSEQLIREALKSM 202


>gi|300951483|ref|ZP_07165318.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 116-1]
 gi|300956626|ref|ZP_07168905.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 175-1]
 gi|300316608|gb|EFJ66392.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 175-1]
 gi|300449233|gb|EFK12853.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 116-1]
          Length = 203

 Score =  189 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 99/204 (48%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPTADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + +     A    +IR ALRA
Sbjct: 181 VSKIAR---PDASSETLIREALRA 201


>gi|49082750|gb|AAT50775.1| PA0966 [synthetic construct]
          Length = 202

 Score =  189 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 110/205 (53%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGTLAEKQPPHLILDVNGVGYEVEVPMTTLYRLPSVGEPVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K 
Sbjct: 61  YGFAEKRERELFRELIRLNGVGPKLALTLMSGLEVDELVRCVQAQDTSTLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  ++    ++ +  E     ++ S   +A+SAL+ LG+   +A+ A
Sbjct: 121 AERLLVELKDRFKAWENM--PTIAPLVMEPRASATVSSAEADAVSALIALGFKPQEASRA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +V           ++IR AL+ +
Sbjct: 179 VAAVP---GEDLSSEEMIRQALKGM 200


>gi|15802274|ref|NP_288298.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7
           EDL933]
 gi|15831825|ref|NP_310598.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           Sakai]
 gi|16129814|ref|NP_416375.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           coli str. K-12 substr. MG1655]
 gi|26248127|ref|NP_754167.1| Holliday junction DNA helicase RuvA [Escherichia coli CFT073]
 gi|82543694|ref|YP_407641.1| Holliday junction DNA helicase RuvA [Shigella boydii Sb227]
 gi|89108701|ref|AP_002481.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           coli str. K-12 substr. W3110]
 gi|91211086|ref|YP_541072.1| Holliday junction DNA helicase RuvA [Escherichia coli UTI89]
 gi|110641979|ref|YP_669709.1| Holliday junction DNA helicase RuvA [Escherichia coli 536]
 gi|117624013|ref|YP_852926.1| Holliday junction DNA helicase motor protein [Escherichia coli APEC
           O1]
 gi|157159402|ref|YP_001463164.1| Holliday junction DNA helicase RuvA [Escherichia coli E24377A]
 gi|168747889|ref|ZP_02772911.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4113]
 gi|168757895|ref|ZP_02782902.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4401]
 gi|168762345|ref|ZP_02787352.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4501]
 gi|168770844|ref|ZP_02795851.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4486]
 gi|168776592|ref|ZP_02801599.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4196]
 gi|168783161|ref|ZP_02808168.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4076]
 gi|168788281|ref|ZP_02813288.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC869]
 gi|168801903|ref|ZP_02826910.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC508]
 gi|170081517|ref|YP_001730837.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           coli str. K-12 substr. DH10B]
 gi|170683558|ref|YP_001743383.1| Holliday junction DNA helicase RuvA [Escherichia coli SMS-3-5]
 gi|187730219|ref|YP_001879638.1| Holliday junction DNA helicase RuvA [Shigella boydii CDC 3083-94]
 gi|191173018|ref|ZP_03034552.1| Holliday junction DNA helicase RuvA [Escherichia coli F11]
 gi|193066070|ref|ZP_03047127.1| Holliday junction DNA helicase RuvA [Escherichia coli E22]
 gi|194429662|ref|ZP_03062180.1| Holliday junction DNA helicase RuvA [Escherichia coli B171]
 gi|195940293|ref|ZP_03085675.1| Holliday junction DNA helicase motor protein [Escherichia coli
           O157:H7 str. EC4024]
 gi|208810719|ref|ZP_03252595.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4206]
 gi|208816922|ref|ZP_03258042.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4045]
 gi|209396228|ref|YP_002270944.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4115]
 gi|209919228|ref|YP_002293312.1| Holliday junction DNA helicase RuvA [Escherichia coli SE11]
 gi|215487074|ref|YP_002329505.1| Holliday junction DNA helicase RuvA [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217328695|ref|ZP_03444776.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           TW14588]
 gi|218554449|ref|YP_002387362.1| Holliday junction DNA helicase RuvA [Escherichia coli IAI1]
 gi|218558726|ref|YP_002391639.1| Holliday junction DNA helicase RuvA [Escherichia coli S88]
 gi|218689799|ref|YP_002398011.1| Holliday junction DNA helicase RuvA [Escherichia coli ED1a]
 gi|218695427|ref|YP_002403094.1| Holliday junction DNA helicase RuvA [Escherichia coli 55989]
 gi|218699567|ref|YP_002407196.1| Holliday junction DNA helicase RuvA [Escherichia coli IAI39]
 gi|218705362|ref|YP_002412881.1| Holliday junction DNA helicase RuvA [Escherichia coli UMN026]
 gi|227885711|ref|ZP_04003516.1| Holliday junction DNA helicase motor protein [Escherichia coli
           83972]
 gi|237705815|ref|ZP_04536296.1| holliday junction helicase subunit B [Escherichia sp. 3_2_53FAA]
 gi|238901076|ref|YP_002926872.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           coli BW2952]
 gi|254793485|ref|YP_003078322.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           TW14359]
 gi|256022473|ref|ZP_05436338.1| Holliday junction DNA helicase RuvA [Escherichia sp. 4_1_40B]
 gi|260844205|ref|YP_003221983.1| component of RuvABC resolvasome, regulatory subunit RuvA
           [Escherichia coli O103:H2 str. 12009]
 gi|261227638|ref|ZP_05941919.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261258196|ref|ZP_05950729.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291283043|ref|YP_003499861.1| Holliday junction ATP-dependent DNA helicase ruvA [Escherichia coli
           O55:H7 str. CB9615]
 gi|293405356|ref|ZP_06649348.1| ruvA [Escherichia coli FVEC1412]
 gi|293410173|ref|ZP_06653749.1| Holliday junction DNA helicase RuvA [Escherichia coli B354]
 gi|293415176|ref|ZP_06657819.1| Holliday junction DNA helicase RuvA [Escherichia coli B185]
 gi|293446248|ref|ZP_06662670.1| Holliday junction DNA helicase RuvA [Escherichia coli B088]
 gi|298380998|ref|ZP_06990597.1| Holliday junction ATP-dependent DNA helicase ruvA [Escherichia coli
           FVEC1302]
 gi|300824197|ref|ZP_07104315.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 119-7]
 gi|300899111|ref|ZP_07117394.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 198-1]
 gi|300904745|ref|ZP_07122575.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 84-1]
 gi|300917562|ref|ZP_07134217.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 115-1]
 gi|300935836|ref|ZP_07150794.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 21-1]
 gi|300982165|ref|ZP_07175900.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 200-1]
 gi|300994110|ref|ZP_07180693.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 45-1]
 gi|301018303|ref|ZP_07182812.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 69-1]
 gi|301029311|ref|ZP_07192408.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 196-1]
 gi|301050785|ref|ZP_07197642.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 185-1]
 gi|301304450|ref|ZP_07210562.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 124-1]
 gi|306814309|ref|ZP_07448475.1| Holliday junction DNA helicase RuvA [Escherichia coli NC101]
 gi|307138524|ref|ZP_07497880.1| Holliday junction DNA helicase RuvA [Escherichia coli H736]
 gi|312967063|ref|ZP_07781281.1| holliday junction DNA helicase RuvA [Escherichia coli 2362-75]
 gi|331642475|ref|ZP_08343610.1| holliday junction DNA helicase RuvA [Escherichia coli H736]
 gi|331647458|ref|ZP_08348550.1| holliday junction DNA helicase RuvA [Escherichia coli M605]
 gi|331653270|ref|ZP_08354275.1| holliday junction DNA helicase RuvA [Escherichia coli M718]
 gi|331657910|ref|ZP_08358872.1| holliday junction DNA helicase RuvA [Escherichia coli TA206]
 gi|331673391|ref|ZP_08374159.1| holliday junction DNA helicase RuvA [Escherichia coli TA280]
 gi|331677742|ref|ZP_08378417.1| holliday junction DNA helicase RuvA [Escherichia coli H591]
 gi|331683367|ref|ZP_08383968.1| holliday junction DNA helicase RuvA [Escherichia coli H299]
 gi|67472389|sp|P0A809|RUVA_ECOLI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|67472390|sp|P0A810|RUVA_ECOL6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|67472391|sp|P0A811|RUVA_ECO57 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|90135806|sp|Q322E5|RUVA_SHIBS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|123343927|sp|Q0TGX1|RUVA_ECOL5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|123387921|sp|Q1RAS3|RUVA_ECOUT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230548|sp|A1AC22|RUVA_ECOK1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|167012658|sp|A7ZMY5|RUVA_ECO24 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226698730|sp|B5YR06|RUVA_ECO5E RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226698731|sp|B6IBU0|RUVA_ECOSE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226725440|sp|B7MBS0|RUVA_ECO45 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226725441|sp|B7NS57|RUVA_ECO7I RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226725442|sp|B7M2F2|RUVA_ECO8A RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226725443|sp|B7NBL2|RUVA_ECOLU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226725444|sp|B1LD10|RUVA_ECOSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560029|sp|B1XHC9|RUVA_ECODH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560128|sp|B2TWQ2|RUVA_SHIB3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254766959|sp|B7USN8|RUVA_ECO27 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254766960|sp|B7L7R4|RUVA_ECO55 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254766961|sp|B7MVP7|RUVA_ECO81 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|259495641|sp|C4ZQE5|RUVA_ECOBW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|5107494|pdb|1BDX|A Chain A, E. Coli Dna Helicase Ruva With Bound Dna Holliday
           Junction, Alpha Carbons And Phosphate Atoms Only
 gi|5107495|pdb|1BDX|B Chain B, E. Coli Dna Helicase Ruva With Bound Dna Holliday
           Junction, Alpha Carbons And Phosphate Atoms Only
 gi|5107496|pdb|1BDX|C Chain C, E. Coli Dna Helicase Ruva With Bound Dna Holliday
           Junction, Alpha Carbons And Phosphate Atoms Only
 gi|5107497|pdb|1BDX|D Chain D, E. Coli Dna Helicase Ruva With Bound Dna Holliday
           Junction, Alpha Carbons And Phosphate Atoms Only
 gi|9955149|pdb|1C7Y|A Chain A, E.Coli Ruva-Holliday Junction Complex
 gi|157831340|pdb|1HJP|A Chain A, Holliday Junction Binding Protein Ruva From E. Coli
 gi|12515917|gb|AAG56851.1|AE005408_9 Holliday junction helicase subunit B; branch migration; repair
           [Escherichia coli O157:H7 str. EDL933]
 gi|26108530|gb|AAN80732.1|AE016761_307 Holliday junction DNA helicase ruvA [Escherichia coli CFT073]
 gi|147782|gb|AAA24612.1| ruvA protein (gtg start) [Escherichia coli]
 gi|1736508|dbj|BAA15672.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           coli str. K12 substr. W3110]
 gi|1788168|gb|AAC74931.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           coli str. K-12 substr. MG1655]
 gi|13362039|dbj|BAB35994.1| Holliday junction helicase subunit B [Escherichia coli O157:H7 str.
           Sakai]
 gi|81245105|gb|ABB65813.1| Holliday junction helicase subunit B [Shigella boydii Sb227]
 gi|91072660|gb|ABE07541.1| RuvA protein, Holliday junction helicase subunit B [Escherichia
           coli UTI89]
 gi|110343571|gb|ABG69808.1| holliday junction DNA helicase RuvA [Escherichia coli 536]
 gi|115513137|gb|ABJ01212.1| Holliday junction DNA helicase motor protein [Escherichia coli APEC
           O1]
 gi|157081432|gb|ABV21140.1| Holliday junction DNA helicase RuvA [Escherichia coli E24377A]
 gi|169889352|gb|ACB03059.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           coli str. K-12 substr. DH10B]
 gi|170521276|gb|ACB19454.1| Holliday junction DNA helicase RuvA [Escherichia coli SMS-3-5]
 gi|187427211|gb|ACD06485.1| Holliday junction DNA helicase RuvA [Shigella boydii CDC 3083-94]
 gi|187768087|gb|EDU31931.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017456|gb|EDU55578.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999499|gb|EDU68485.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4076]
 gi|189355165|gb|EDU73584.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4401]
 gi|189360288|gb|EDU78707.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4486]
 gi|189367348|gb|EDU85764.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4501]
 gi|189372002|gb|EDU90418.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC869]
 gi|189376026|gb|EDU94442.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC508]
 gi|190906729|gb|EDV66334.1| Holliday junction DNA helicase RuvA [Escherichia coli F11]
 gi|192926307|gb|EDV80944.1| Holliday junction DNA helicase RuvA [Escherichia coli E22]
 gi|194412304|gb|EDX28608.1| Holliday junction DNA helicase RuvA [Escherichia coli B171]
 gi|195182923|dbj|BAG66491.1| Holliday junction helicase subunit B [Escherichia coli O111:H-]
 gi|208725235|gb|EDZ74942.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4206]
 gi|208731265|gb|EDZ79954.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4045]
 gi|209157628|gb|ACI35061.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC4115]
 gi|209767468|gb|ACI82046.1| Holliday junction helicase subunit B [Escherichia coli]
 gi|209767470|gb|ACI82047.1| Holliday junction helicase subunit B [Escherichia coli]
 gi|209767472|gb|ACI82048.1| Holliday junction helicase subunit B [Escherichia coli]
 gi|209767474|gb|ACI82049.1| Holliday junction helicase subunit B [Escherichia coli]
 gi|209767476|gb|ACI82050.1| Holliday junction helicase subunit B [Escherichia coli]
 gi|209912487|dbj|BAG77561.1| holliday junction helicase subunit RuvA [Escherichia coli SE11]
 gi|215265146|emb|CAS09534.1| RuvA component of RuvABC resolvasome, regulatory subunit
           [Escherichia coli O127:H6 str. E2348/69]
 gi|217318042|gb|EEC26469.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           TW14588]
 gi|218352159|emb|CAU97898.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           coli 55989]
 gi|218361217|emb|CAQ98801.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           coli IAI1]
 gi|218365495|emb|CAR03222.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           coli S88]
 gi|218369553|emb|CAR17322.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           coli IAI39]
 gi|218427363|emb|CAR08163.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           coli ED1a]
 gi|218432459|emb|CAR13352.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           coli UMN026]
 gi|222033610|emb|CAP76351.1| Holliday junction ATP-dependent DNA helicase ruvA [Escherichia coli
           LF82]
 gi|226900572|gb|EEH86831.1| holliday junction helicase subunit B [Escherichia sp. 3_2_53FAA]
 gi|227837284|gb|EEJ47750.1| Holliday junction DNA helicase motor protein [Escherichia coli
           83972]
 gi|238860169|gb|ACR62167.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           coli BW2952]
 gi|254592885|gb|ACT72246.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           coli O157:H7 str. TW14359]
 gi|257759352|dbj|BAI30849.1| component of RuvABC resolvasome, regulatory subunit RuvA
           [Escherichia coli O103:H2 str. 12009]
 gi|260449016|gb|ACX39438.1| Holliday junction DNA helicase RuvA [Escherichia coli DH1]
 gi|281178931|dbj|BAI55261.1| holliday junction helicase subunit RuvA [Escherichia coli SE15]
 gi|284921781|emb|CBG34854.1| holliday junction ATP-dependent DNA helicase [Escherichia coli 042]
 gi|290762916|gb|ADD56877.1| Holliday junction ATP-dependent DNA helicase ruvA [Escherichia coli
           O55:H7 str. CB9615]
 gi|291323078|gb|EFE62506.1| Holliday junction DNA helicase RuvA [Escherichia coli B088]
 gi|291427564|gb|EFF00591.1| ruvA [Escherichia coli FVEC1412]
 gi|291432824|gb|EFF05803.1| Holliday junction DNA helicase RuvA [Escherichia coli B185]
 gi|291470641|gb|EFF13125.1| Holliday junction DNA helicase RuvA [Escherichia coli B354]
 gi|294493531|gb|ADE92287.1| Holliday junction DNA helicase RuvA [Escherichia coli IHE3034]
 gi|298278440|gb|EFI19954.1| Holliday junction ATP-dependent DNA helicase ruvA [Escherichia coli
           FVEC1302]
 gi|299877737|gb|EFI85948.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 196-1]
 gi|300297540|gb|EFJ53925.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 185-1]
 gi|300307321|gb|EFJ61841.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 200-1]
 gi|300357268|gb|EFJ73138.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 198-1]
 gi|300399739|gb|EFJ83277.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 69-1]
 gi|300403329|gb|EFJ86867.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 84-1]
 gi|300406372|gb|EFJ89910.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 45-1]
 gi|300415216|gb|EFJ98526.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 115-1]
 gi|300458948|gb|EFK22441.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 21-1]
 gi|300523268|gb|EFK44337.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 119-7]
 gi|300840301|gb|EFK68061.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 124-1]
 gi|305852468|gb|EFM52919.1| Holliday junction DNA helicase RuvA [Escherichia coli NC101]
 gi|307553880|gb|ADN46655.1| holliday junction ATP-dependent DNA helicase RuvA [Escherichia coli
           ABU 83972]
 gi|307626656|gb|ADN70960.1| Holliday junction DNA helicase RuvA [Escherichia coli UM146]
 gi|312288527|gb|EFR16429.1| holliday junction DNA helicase RuvA [Escherichia coli 2362-75]
 gi|312946461|gb|ADR27288.1| Holliday junction DNA helicase RuvA [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|315136504|dbj|BAJ43663.1| Holliday junction DNA resolvasome [Escherichia coli DH1]
 gi|315257307|gb|EFU37275.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 85-1]
 gi|315286570|gb|EFU46005.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 110-3]
 gi|315290340|gb|EFU49716.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 153-1]
 gi|315296552|gb|EFU55849.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 16-3]
 gi|320173573|gb|EFW48768.1| Holliday junction DNA helicase RuvA [Shigella dysenteriae CDC
           74-1112]
 gi|320182601|gb|EFW57490.1| Holliday junction DNA helicase RuvA [Shigella boydii ATCC 9905]
 gi|320187795|gb|EFW62469.1| Holliday junction DNA helicase RuvA [Shigella flexneri CDC 796-83]
 gi|320188562|gb|EFW63224.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           EC1212]
 gi|320194423|gb|EFW69054.1| Holliday junction DNA helicase RuvA [Escherichia coli WV_060327]
 gi|320641715|gb|EFX11103.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           G5101]
 gi|320647075|gb|EFX15908.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H- str.
           493-89]
 gi|320652358|gb|EFX20656.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H- str.
           H 2687]
 gi|320657959|gb|EFX25721.1| Holliday junction DNA helicase RuvA [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320658532|gb|EFX26226.1| Holliday junction DNA helicase RuvA [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320668430|gb|EFX35257.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323158654|gb|EFZ44668.1| holliday junction DNA helicase RuvA [Escherichia coli E128010]
 gi|323174753|gb|EFZ60369.1| holliday junction DNA helicase RuvA [Escherichia coli LT-68]
 gi|323186868|gb|EFZ72187.1| holliday junction DNA helicase RuvA [Escherichia coli RN587/1]
 gi|323940471|gb|EGB36662.1| Holliday junction DNA helicase RuvA [Escherichia coli E482]
 gi|323948253|gb|EGB44241.1| Holliday junction DNA helicase RuvA [Escherichia coli H120]
 gi|323952363|gb|EGB48236.1| Holliday junction DNA helicase RuvA [Escherichia coli H252]
 gi|323956492|gb|EGB52234.1| Holliday junction DNA helicase RuvA [Escherichia coli H263]
 gi|323968281|gb|EGB63688.1| Holliday junction DNA helicase RuvA [Escherichia coli M863]
 gi|323977955|gb|EGB73041.1| Holliday junction DNA helicase RuvA [Escherichia coli TW10509]
 gi|324007232|gb|EGB76451.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 57-2]
 gi|324012870|gb|EGB82089.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 60-1]
 gi|324018004|gb|EGB87223.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 117-3]
 gi|325496996|gb|EGC94855.1| Holliday junction DNA helicase RuvA [Escherichia fergusonii ECD227]
 gi|326342241|gb|EGD66022.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           1044]
 gi|326343791|gb|EGD67553.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str.
           1125]
 gi|327252987|gb|EGE64641.1| holliday junction DNA helicase RuvA [Escherichia coli STEC_7v]
 gi|330911671|gb|EGH40181.1| holliday junction DNA helicase RuvA [Escherichia coli AA86]
 gi|331039273|gb|EGI11493.1| holliday junction DNA helicase RuvA [Escherichia coli H736]
 gi|331043182|gb|EGI15320.1| holliday junction DNA helicase RuvA [Escherichia coli M605]
 gi|331049368|gb|EGI21440.1| holliday junction DNA helicase RuvA [Escherichia coli M718]
 gi|331056158|gb|EGI28167.1| holliday junction DNA helicase RuvA [Escherichia coli TA206]
 gi|331069589|gb|EGI40976.1| holliday junction DNA helicase RuvA [Escherichia coli TA280]
 gi|331074202|gb|EGI45522.1| holliday junction DNA helicase RuvA [Escherichia coli H591]
 gi|331079582|gb|EGI50779.1| holliday junction DNA helicase RuvA [Escherichia coli H299]
 gi|332090038|gb|EGI95138.1| holliday junction DNA helicase RuvA [Shigella boydii 5216-82]
 gi|332096672|gb|EGJ01663.1| holliday junction DNA helicase RuvA [Shigella boydii 3594-74]
 gi|332343587|gb|AEE56921.1| holliday junction DNA helicase RuvA [Escherichia coli UMNK88]
 gi|333003565|gb|EGK23105.1| holliday junction DNA helicase RuvA [Shigella flexneri VA-6]
 gi|333004714|gb|EGK24237.1| holliday junction DNA helicase RuvA [Shigella flexneri K-272]
 gi|333018434|gb|EGK37732.1| holliday junction DNA helicase RuvA [Shigella flexneri K-227]
          Length = 203

 Score =  189 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 99/204 (48%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + +     A    +IR ALRA
Sbjct: 181 VSKIAR---PDASSETLIREALRA 201


>gi|296390675|ref|ZP_06880150.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa PAb1]
          Length = 201

 Score =  189 bits (479), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 110/205 (53%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGTLAEKQPPHLILDVNGVGYEVEVPMTTLYRLPSVGEPVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K 
Sbjct: 61  YGFAEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSTLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  ++    ++ +  E     ++ S   +A+SAL+ LG+   +A+ A
Sbjct: 121 AERLLVELKDRFKAWQNM--PTIAPLVMEPRGSATVSSAEADAVSALIALGFKPQEASRA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +V           ++IR AL+ +
Sbjct: 179 VAAVP---GEDLSSEEMIRQALKGM 200


>gi|191168085|ref|ZP_03029884.1| Holliday junction DNA helicase RuvA [Escherichia coli B7A]
 gi|256017935|ref|ZP_05431800.1| Holliday junction DNA helicase RuvA [Shigella sp. D9]
 gi|260855801|ref|YP_003229692.1| component of RuvABC resolvasome, regulatory subunit RuvA
           [Escherichia coli O26:H11 str. 11368]
 gi|260868396|ref|YP_003234798.1| component of RuvABC resolvasome, regulatory subunit RuvA
           [Escherichia coli O111:H- str. 11128]
 gi|300816247|ref|ZP_07096469.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 107-1]
 gi|300924950|ref|ZP_07140877.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 182-1]
 gi|301327650|ref|ZP_07220858.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 78-1]
 gi|307314227|ref|ZP_07593837.1| Holliday junction DNA helicase RuvA [Escherichia coli W]
 gi|309794242|ref|ZP_07688666.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 145-7]
 gi|332278969|ref|ZP_08391382.1| holliday junction helicase subunit B [Shigella sp. D9]
 gi|190901883|gb|EDV61633.1| Holliday junction DNA helicase RuvA [Escherichia coli B7A]
 gi|257754450|dbj|BAI25952.1| component of RuvABC resolvasome, regulatory subunit RuvA
           [Escherichia coli O26:H11 str. 11368]
 gi|257764752|dbj|BAI36247.1| component of RuvABC resolvasome, regulatory subunit RuvA
           [Escherichia coli O111:H- str. 11128]
 gi|300418886|gb|EFK02197.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 182-1]
 gi|300530937|gb|EFK51999.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 107-1]
 gi|300845798|gb|EFK73558.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 78-1]
 gi|306906196|gb|EFN36714.1| Holliday junction DNA helicase RuvA [Escherichia coli W]
 gi|308122147|gb|EFO59409.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 145-7]
 gi|315061167|gb|ADT75494.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           coli W]
 gi|320198055|gb|EFW72663.1| Holliday junction DNA helicase RuvA [Escherichia coli EC4100B]
 gi|323152650|gb|EFZ38926.1| holliday junction DNA helicase RuvA [Escherichia coli EPECa14]
 gi|323180658|gb|EFZ66203.1| holliday junction DNA helicase RuvA [Escherichia coli 1180]
 gi|323378256|gb|ADX50524.1| Holliday junction DNA helicase RuvA [Escherichia coli KO11]
 gi|324113597|gb|EGC07572.1| Holliday junction DNA helicase RuvA [Escherichia fergusonii B253]
 gi|324118921|gb|EGC12810.1| Holliday junction DNA helicase RuvA [Escherichia coli E1167]
 gi|332101321|gb|EGJ04667.1| holliday junction helicase subunit B [Shigella sp. D9]
          Length = 203

 Score =  189 bits (479), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 99/204 (48%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPTTDDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + +     A    +IR ALRA
Sbjct: 181 VSKIAR---PDASSETLIREALRA 201


>gi|148977429|ref|ZP_01814029.1| Holliday junction DNA helicase motor protein [Vibrionales bacterium
           SWAT-3]
 gi|145963381|gb|EDK28646.1| Holliday junction DNA helicase motor protein [Vibrionales bacterium
           SWAT-3]
          Length = 203

 Score =  189 bits (479), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 104/205 (50%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI+V GV Y +  P+     L  +G+   ++    +R+D   L
Sbjct: 1   MIGRLRGTLIEKQPPELLIEVSGVGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TA++ V+S+  ++   + ++PG+  K 
Sbjct: 61  YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVQSVEREDISTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +     +      +        + ++      A+SAL+ LGY   QA+  
Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPATDAAPIDSMPTVHDAEEEAVSALLALGYKPTQASKV 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V K+        Q+IR AL+++
Sbjct: 181 VSQVAKE---GMTSEQLIRDALKSM 202


>gi|74311809|ref|YP_310228.1| Holliday junction DNA helicase RuvA [Shigella sonnei Ss046]
 gi|90135833|sp|Q3Z2L9|RUVA_SHISS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|73855286|gb|AAZ87993.1| Holliday junction helicase subunit B [Shigella sonnei Ss046]
          Length = 203

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 100/204 (49%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + + +   A    +IR ALRA
Sbjct: 181 VSKIARTD---ASSETLIREALRA 201


>gi|30063272|ref|NP_837443.1| Holliday junction DNA helicase RuvA [Shigella flexneri 2a str.
           2457T]
 gi|30041524|gb|AAP17252.1| Holliday junction helicase subunit B [Shigella flexneri 2a str.
           2457T]
 gi|313650643|gb|EFS15045.1| holliday junction DNA helicase RuvA [Shigella flexneri 2a str.
           2457T]
 gi|332757632|gb|EGJ87965.1| holliday junction DNA helicase RuvA [Shigella flexneri 2747-71]
 gi|332758049|gb|EGJ88375.1| holliday junction DNA helicase RuvA [Shigella flexneri K-671]
 gi|333004779|gb|EGK24301.1| holliday junction DNA helicase RuvA [Shigella flexneri K-218]
 gi|333018630|gb|EGK37924.1| holliday junction DNA helicase RuvA [Shigella flexneri K-304]
          Length = 203

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 98/204 (48%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + +          +IR ALRA
Sbjct: 181 VSKIAR---PDTSSETLIREALRA 201


>gi|301645623|ref|ZP_07245552.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 146-1]
 gi|301076155|gb|EFK90961.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 146-1]
          Length = 203

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 99/204 (48%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + +     A    +IR ALRA
Sbjct: 181 VSKIAR---PDASSESLIREALRA 201


>gi|261340247|ref|ZP_05968105.1| holliday junction DNA helicase RuvA [Enterobacter cancerogenus ATCC
           35316]
 gi|288317332|gb|EFC56270.1| holliday junction DNA helicase RuvA [Enterobacter cancerogenus ATCC
           35316]
          Length = 203

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 59/204 (28%), Positives = 100/204 (49%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++V GV Y ++ P+     L   G    +F +  +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLEVGGVGYEVHMPMTCFYELPDAGKEAIVFTQFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  ++   + ++PGI  K 
Sbjct: 61  YGFNNKQERMLFRELIKTNGVGPKLALAILSGMSAPQFVNAVEREDPAALIKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        S       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPGAPSSDDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  V K     A    +IR ALRA
Sbjct: 181 VSKVAK---PDAGSETLIREALRA 201


>gi|15596163|ref|NP_249657.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa PAO1]
 gi|107100423|ref|ZP_01364341.1| hypothetical protein PaerPA_01001448 [Pseudomonas aeruginosa PACS2]
 gi|116048891|ref|YP_792308.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|152985106|ref|YP_001349891.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa PA7]
 gi|218893063|ref|YP_002441932.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa LESB58]
 gi|254239314|ref|ZP_04932637.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa C3719]
 gi|254245249|ref|ZP_04938571.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa 2192]
 gi|313105853|ref|ZP_07792116.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa 39016]
 gi|2498872|sp|Q51425|RUVA_PSEAE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|122257998|sp|Q02IC8|RUVA_PSEAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230585|sp|A6VA06|RUVA_PSEA7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226725446|sp|B7UXW6|RUVA_PSEA8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|9946873|gb|AAG04355.1|AE004530_8 Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa PAO1]
 gi|1183841|dbj|BAA11818.1| Holliday junction binding protein [Pseudomonas aeruginosa]
 gi|115584112|gb|ABJ10127.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126171245|gb|EAZ56756.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa C3719]
 gi|126198627|gb|EAZ62690.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa 2192]
 gi|150960264|gb|ABR82289.1| holliday junction DNA helicase RuvA [Pseudomonas aeruginosa PA7]
 gi|218773291|emb|CAW29103.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa LESB58]
 gi|310878618|gb|EFQ37212.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa 39016]
          Length = 201

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 110/205 (53%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGTLAEKQPPHLILDVNGVGYEVEVPMTTLYRLPSVGEPVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K 
Sbjct: 61  YGFAEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSTLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  ++    ++ +  E     ++ S   +A+SAL+ LG+   +A+ A
Sbjct: 121 AERLLVELKDRFKAWENM--PTIAPLVMEPRASATVSSAEADAVSALIALGFKPQEASRA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +V           ++IR AL+ +
Sbjct: 179 VAAVP---GEDLSSEEMIRQALKGM 200


>gi|297170981|gb|ADI21996.1| holliday junction resolvasome, DNA-binding subunit [uncultured
           myxobacterium HF0200_01L06]
          Length = 202

 Score =  188 bits (478), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 107/206 (51%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +       +++DV GV Y +  P+ T + L   G   +L+V TH+R+D   L
Sbjct: 1   MIARLEGTLFEKTPTRIVVDVSGVGYELSVPLSTFATLPDEGKTVSLWVHTHVREDAFLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F LL     VG R+A  +LS I    L +++   + KV+  +PGI  K+
Sbjct: 61  YGFATTRERDVFHLLLRANRVGPRLAQTILSGIDPAALCDALGRGDVKVLRGVPGIGPKM 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+  A  L+  +        +        P  A  A+SAL+NLGY + +A   
Sbjct: 121 AERMVVELRDAASELAGALGSAGPSEGR-----PVRPDPAEEALSALLNLGYPRSKAERT 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + + + +    A   Q+IR ALR++S
Sbjct: 176 IEAAIGETGEDASIEQVIRAALRSLS 201


>gi|170769415|ref|ZP_02903868.1| Holliday junction DNA helicase RuvA [Escherichia albertii TW07627]
 gi|170121739|gb|EDS90670.1| Holliday junction DNA helicase RuvA [Escherichia albertii TW07627]
          Length = 203

 Score =  188 bits (477), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++V GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEPAALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPATDLVLTSPASPATEDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + +     A    +IR ALRA
Sbjct: 181 VSKIAR---PDASSETLIREALRA 201


>gi|269967685|ref|ZP_06181735.1| Holliday junction DNA helicase motor protein [Vibrio alginolyticus
           40B]
 gi|269827772|gb|EEZ82056.1| Holliday junction DNA helicase motor protein [Vibrio alginolyticus
           40B]
          Length = 234

 Score =  187 bits (476), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 53/204 (25%), Positives = 98/204 (48%), Gaps = 3/204 (1%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           IG+++G +       VLI+V G+ Y +  P+     L  +G+   ++    +R+D   L+
Sbjct: 33  IGRLRGILIEKQPPEVLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLLY 92

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF +  +R  F  +    GVG ++ +G+LS +TAT+ V  +  ++   + ++PG+  K A
Sbjct: 93  GFNTVKERALFREVIKANGVGPKLGLGILSGMTATQFVTCVEHEDVSTLVKLPGVGKKTA 152

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
            R++ E+K +     +                 +  +    AISAL+ LGY   QA+  V
Sbjct: 153 ERLVVEMKDRLKGWGAGDLFTPFTDAAPADSSATSNNAEEEAISALLALGYKPTQASKVV 212

Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205
             + K         Q+IR AL+++
Sbjct: 213 SQIAK---PDMSSEQMIREALKSM 233


>gi|229592301|ref|YP_002874420.1| Holliday junction DNA helicase RuvA [Pseudomonas fluorescens SBW25]
 gi|312962759|ref|ZP_07777247.1| Holliday junction ATP-dependent DNA helicase [Pseudomonas
           fluorescens WH6]
 gi|259495652|sp|C3JYS8|RUVA_PSEFS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229364167|emb|CAY51821.1| holliday junction helicase subunit B [Pseudomonas fluorescens
           SBW25]
 gi|311282976|gb|EFQ61569.1| Holliday junction ATP-dependent DNA helicase [Pseudomonas
           fluorescens WH6]
          Length = 203

 Score =  187 bits (476), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 109/205 (53%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV G+ Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGTLAEKQPPHLILDVNGLGYELEVPMTTLYRLPSVGEPITLHTHLVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   DR +F  L  + GVG ++A+ ++S +   ELV ++  Q++  + ++PG+  K 
Sbjct: 61  YGFIGKRDRDFFRELIRLNGVGPKLALALMSSLEVDELVRAVSAQDTSALTKVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +   V        N+       + S   +A+SAL++LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAWEVVPSMFALVPNQPDMPAGQVASAESDAVSALISLGYKPQEASKA 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++  K         +IR AL+ +
Sbjct: 181 VSAIKDKN---LSSEDMIRRALKGM 202


>gi|24113211|ref|NP_707721.1| Holliday junction DNA helicase RuvA [Shigella flexneri 2a str. 301]
 gi|110805805|ref|YP_689325.1| Holliday junction DNA helicase RuvA [Shigella flexneri 5 str. 8401]
 gi|44888467|sp|Q83KR4|RUVA_SHIFL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|123342783|sp|Q0T3U5|RUVA_SHIF8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|24052207|gb|AAN43428.1| Holliday junction helicase subunit B [Shigella flexneri 2a str.
           301]
 gi|110615353|gb|ABF04020.1| Holliday junction helicase [Shigella flexneri 5 str. 8401]
          Length = 203

 Score =  187 bits (476), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 98/204 (48%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGPLVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + +          +IR ALRA
Sbjct: 181 VSKIAR---PDTSSETLIREALRA 201


>gi|77460629|ref|YP_350136.1| Holliday junction DNA helicase RuvA [Pseudomonas fluorescens Pf0-1]
 gi|90135610|sp|Q3K7V9|RUVA_PSEPF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|77384632|gb|ABA76145.1| holliday junction helicase subunit B [Pseudomonas fluorescens
           Pf0-1]
          Length = 202

 Score =  187 bits (476), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 108/205 (52%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV G+ Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGTLAEKQPPHLILDVNGLGYELEVPMTTLYRLPSVGEPLTLHTHLVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R +F  L  + GVG ++A+ ++S +   EL+  +  Q++  + ++PG+  K 
Sbjct: 61  YGFAGKRERDFFRELIRLNGVGPKLALALMSSLEVDELIRCVQSQDTSALTKVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +         + V  +      + +   +A+SAL++LGY   +A+ A
Sbjct: 121 AERLLVELKNRFKAW-ETSPAMFALVPNQPDGPAPVNTAENDAVSALISLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++ +K         +IR AL+ +
Sbjct: 180 ISAIKEK---GLSSEDMIRRALKGM 201


>gi|82776447|ref|YP_402796.1| Holliday junction DNA helicase RuvA [Shigella dysenteriae Sd197]
 gi|309789257|ref|ZP_07683850.1| holliday junction DNA helicase RuvA [Shigella dysenteriae 1617]
 gi|90135814|sp|Q32HA0|RUVA_SHIDS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|81240595|gb|ABB61305.1| Holliday junction helicase subunit B [Shigella dysenteriae Sd197]
 gi|308923011|gb|EFP68525.1| holliday junction DNA helicase RuvA [Shigella dysenteriae 1617]
          Length = 203

 Score =  187 bits (476), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 98/204 (48%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + +          +IR ALRA
Sbjct: 181 VSKIAR---PDVSSETLIREALRA 201


>gi|194433948|ref|ZP_03066220.1| Holliday junction DNA helicase RuvA [Shigella dysenteriae 1012]
 gi|194417820|gb|EDX33917.1| Holliday junction DNA helicase RuvA [Shigella dysenteriae 1012]
 gi|332095232|gb|EGJ00259.1| holliday junction DNA helicase RuvA [Shigella dysenteriae 155-74]
          Length = 203

 Score =  187 bits (476), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 99/204 (48%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYVLPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + +     A    +IR ALRA
Sbjct: 181 VSKIAR---PDASSETLIREALRA 201


>gi|92113970|ref|YP_573898.1| Holliday junction DNA helicase subunit RuvA [Chromohalobacter
           salexigens DSM 3043]
 gi|91797060|gb|ABE59199.1| Holliday junction DNA helicase subunit RuvA [Chromohalobacter
           salexigens DSM 3043]
          Length = 206

 Score =  187 bits (476), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 52/207 (25%), Positives = 98/207 (47%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV GV Y +   + TL  L   G+   L     +R+D   L
Sbjct: 3   MIGRLRGTLLEKQPPWIVVDVGGVGYELETSMTTLLALPGPGEEVQLHTHLAVREDAHLL 62

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +RQ F  L  V GVG ++A+ +LS +     +  ++  + K + ++PG+  K 
Sbjct: 63  YGFARGDERQLFRALIKVNGVGPKLALAILSGMDQEAFIRCVMEDDIKALTRLPGVGKKT 122

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ +        +  +  +    +   + P    +A SALV LGY   +A+  
Sbjct: 123 AERLVVEMRDRFPHWQLEQENGLHALELGASPTTAAPDPQADAESALVALGYKPTEASRM 182

Query: 181 VVSVLKKEKNIADDSQIIRLAL-RAIS 206
               L    +      +I+ AL R ++
Sbjct: 183 ----LSGLDDGLSTEGLIKAALARKLA 205


>gi|194439064|ref|ZP_03071147.1| Holliday junction DNA helicase RuvA [Escherichia coli 101-1]
 gi|253773182|ref|YP_003036013.1| Holliday junction DNA helicase RuvA [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161921|ref|YP_003045029.1| Holliday junction DNA helicase RuvA [Escherichia coli B str.
           REL606]
 gi|300928892|ref|ZP_07144397.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 187-1]
 gi|194422023|gb|EDX38027.1| Holliday junction DNA helicase RuvA [Escherichia coli 101-1]
 gi|242377582|emb|CAQ32337.1| branch migration of Holliday structures; repair, subunit of
           resolvasome [Escherichia coli BL21(DE3)]
 gi|253324226|gb|ACT28828.1| Holliday junction DNA helicase RuvA [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973822|gb|ACT39493.1| Holliday junction DNA helicase motor protein [Escherichia coli B
           str. REL606]
 gi|253978016|gb|ACT43686.1| Holliday junction DNA helicase motor protein [Escherichia coli
           BL21(DE3)]
 gi|300463120|gb|EFK26613.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 187-1]
 gi|323961916|gb|EGB57515.1| Holliday junction DNA helicase RuvA [Escherichia coli H489]
 gi|323972631|gb|EGB67834.1| Holliday junction DNA helicase RuvA [Escherichia coli TA007]
          Length = 203

 Score =  187 bits (476), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 98/204 (48%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y +  P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVLMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATNDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + +     A    +IR ALRA
Sbjct: 181 VSKIAR---PDASSETLIREALRA 201


>gi|119504258|ref|ZP_01626338.1| Holliday junction DNA helicase motor protein [marine gamma
           proteobacterium HTCC2080]
 gi|119459766|gb|EAW40861.1| Holliday junction DNA helicase motor protein [marine gamma
           proteobacterium HTCC2080]
          Length = 209

 Score =  187 bits (475), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 101/204 (49%), Gaps = 2/204 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +       +L+DV G+ Y +  P+ TL  L ++G+  TL     +R+D   L
Sbjct: 1   MIGYLRGRLIVKRPPELLVDVGGIGYELQVPMTTLFDLPEVGEEVTLLTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + DR+ F  L  V GVG ++A+ +LS + A    + +   +   +  +PG+  K 
Sbjct: 61  YGFREEADRRLFRELIKVSGVGPKLALALLSGLDARAFAQCLQRDDVATLVALPGVGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ KA      +   +     +   +         A  ALV LGY   +A+  
Sbjct: 121 AERLLVEMRDKAGKWLEELSPAIPGTQGQFVSVAPAMDSRTEAEQALVALGYKLPEASRL 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V +V   +++I    ++IR AL+A
Sbjct: 181 VAAV--DDESIESSEELIRRALKA 202


>gi|29654859|ref|NP_820551.1| Holliday junction DNA helicase RuvA [Coxiella burnetii RSA 493]
 gi|153208743|ref|ZP_01946981.1| Holliday junction DNA helicase RuvA [Coxiella burnetii 'MSU Goat
           Q177']
 gi|161831144|ref|YP_001597405.1| Holliday junction DNA helicase RuvA [Coxiella burnetii RSA 331]
 gi|165918688|ref|ZP_02218774.1| Holliday junction DNA helicase RuvA [Coxiella burnetii RSA 334]
 gi|212219280|ref|YP_002306067.1| Holliday junction DNA helicase RuvA [Coxiella burnetii CbuK_Q154]
 gi|44888458|sp|Q83BE2|RUVA_COXBU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189045751|sp|A9N9A2|RUVA_COXBR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226698727|sp|B6J505|RUVA_COXB1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|29542128|gb|AAO91065.1| holliday junction DNA helicase [Coxiella burnetii RSA 493]
 gi|120575775|gb|EAX32399.1| Holliday junction DNA helicase RuvA [Coxiella burnetii 'MSU Goat
           Q177']
 gi|161763011|gb|ABX78653.1| Holliday junction DNA helicase RuvA [Coxiella burnetii RSA 331]
 gi|165917623|gb|EDR36227.1| Holliday junction DNA helicase RuvA [Coxiella burnetii RSA 334]
 gi|212013542|gb|ACJ20922.1| holliday junction DNA helicase [Coxiella burnetii CbuK_Q154]
          Length = 200

 Score =  187 bits (475), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 99/205 (48%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G I      Y+L++V GV Y I  P+ T   L +  +   L+    +R+D   L
Sbjct: 1   MIGHLRGIIVEKQPPYLLLEVAGVGYEITAPLSTFYHLPEPQEEILLYTHLIVREDAHTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +D +R+ F  L  V GVG ++A+ +LS I   E V  ++ QN   + +IPG+  K 
Sbjct: 61  YGFHNDHERRLFRALIKVNGVGPKLALAILSGIGPDEFVHCVLNQNIDQLVRIPGVGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E K              +     +    S      +AISAL+ LGY   +A  A
Sbjct: 121 AERLVIETKDGLSRWH------TNDTPSPEGLRSSNTQPTQDAISALMALGYKPQEAKRA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++ K          +IRLAL+ +
Sbjct: 175 IDAIQK---PDLSAETLIRLALKQM 196


>gi|330975328|gb|EGH75394.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 202

 Score =  187 bits (475), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 114/205 (55%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G++      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGSLAEKQPPHLVLDVNGVGYEVEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K 
Sbjct: 61  YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  S +    + V+        + S   +A+SAL++LG    +A+ A
Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNQAEPVASAESDAVSALISLGNKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++ +K+ + AD   +IR AL+ +
Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201


>gi|27365489|ref|NP_761017.1| Holliday junction DNA helicase RuvA [Vibrio vulnificus CMCP6]
 gi|161486619|ref|NP_935078.2| Holliday junction DNA helicase motor protein [Vibrio vulnificus
           YJ016]
 gi|320155872|ref|YP_004188251.1| Holliday junction DNA helicase RuvA [Vibrio vulnificus MO6-24/O]
 gi|29611844|sp|Q8DAN4|RUVA_VIBVU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|44888369|sp|Q7MJ77|RUVA_VIBVY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|27361637|gb|AAO10544.1| Holliday junction DNA helicase RuvA [Vibrio vulnificus CMCP6]
 gi|319931184|gb|ADV86048.1| holliday junction DNA helicase RuvA [Vibrio vulnificus MO6-24/O]
          Length = 204

 Score =  187 bits (474), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 102/206 (49%), Gaps = 4/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI+V G+ Y +  P+     L  IG+   ++    +R+D   L
Sbjct: 1   MIGRLRGILLEKQPPELLIEVNGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ + +LS +TA++ V S+  ++   + ++PG+  K 
Sbjct: 61  YGFNTVKERALFREVIKANGVGPKLGLAILSGMTASQFVASVEREDISTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +     +  +    +      +   S  S    A+SAL+ LGY   QA+ 
Sbjct: 121 AERLVVEMKDRLKGWSAGDLFTPFTDAAPVDSGSTSSNSAEEEAVSALLALGYKPVQASK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            V  + K         Q+IR AL+++
Sbjct: 181 VVSQIAK---PDMTSEQLIREALKSM 203


>gi|330811393|ref|YP_004355855.1| Holliday junction ATP-dependent DNA helicase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327379501|gb|AEA70851.1| Holliday junction ATP-dependent DNA helicase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 202

 Score =  187 bits (474), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 109/205 (53%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV G+ Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGTLAEKQPPHLILDVNGLGYELEVPMTTLYRLPSVGEPLTLHTHLVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   +R +F  L  + GVG ++A+ ++S +   ELV  +  Q++  + ++PG+  K 
Sbjct: 61  YGFVGKRERDFFRELIRLNGVGPKLALALMSSLEVDELVRCVQSQDTSALTKVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +    V    + V  +        S   +A++AL++LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAW-EAVPAMFALVPNQPDAPAPAVSAESDAVTALISLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++ +K         +IR AL+ +
Sbjct: 180 ISAIKEK---GLSTEDMIRRALKGM 201


>gi|311279238|ref|YP_003941469.1| Holliday junction DNA helicase RuvA [Enterobacter cloacae SCF1]
 gi|308748433|gb|ADO48185.1| Holliday junction DNA helicase RuvA [Enterobacter cloacae SCF1]
          Length = 203

 Score =  187 bits (474), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 55/204 (26%), Positives = 99/204 (48%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L   G    +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLEAGGVGYEVHMPMTCFYELPDQGKEAIIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L    GVG ++A+ +LS ++A + V ++  ++   + ++PGI  K 
Sbjct: 61  FGFNNKQERTLFRELIKTNGVGPKLALAILSGMSAAQFVNAVEREDPAALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPAADDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           +  + +     A+   +IR ALRA
Sbjct: 181 ISKIAR---PDANSETLIREALRA 201


>gi|149191831|ref|ZP_01870068.1| Holliday junction DNA helicase motor protein [Vibrio shilonii AK1]
 gi|148834349|gb|EDL51349.1| Holliday junction DNA helicase motor protein [Vibrio shilonii AK1]
          Length = 205

 Score =  187 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 99/207 (47%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI+V GV Y I  P+     L +IG    ++    +R+D   L
Sbjct: 1   MIGRLRGTLIEKQPPELLIEVGGVGYEIQMPMSCFYELPEIGQEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS ++AT+ V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVRERALFREVIKANGVGPKLGLGILSGMSATQFVACVEREDISTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +        +          +     +  +    A+SAL+ LGY   QA+
Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPATDAAPVDSVGAMNADNAEEEAVSALLALGYKPTQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
             V  V K          +IR ALRA+
Sbjct: 181 KVVSQVAK---PDMTSEALIREALRAM 204


>gi|218548578|ref|YP_002382369.1| Holliday junction DNA helicase RuvA [Escherichia fergusonii ATCC
           35469]
 gi|226725445|sp|B7LPI3|RUVA_ESCF3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|218356119|emb|CAQ88736.1| component of RuvABC resolvasome, regulatory subunit [Escherichia
           fergusonii ATCC 35469]
          Length = 203

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 55/202 (27%), Positives = 97/202 (48%), Gaps = 3/202 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           V  + +     A    +IR AL
Sbjct: 181 VSKIAR---PDASSETLIREAL 199


>gi|192360858|ref|YP_001981526.1| Holliday junction DNA helicase RuvA [Cellvibrio japonicus Ueda107]
 gi|229560014|sp|B3PB58|RUVA_CELJU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|190687023|gb|ACE84701.1| Holliday junction DNA helicase RuvA [Cellvibrio japonicus Ueda107]
          Length = 205

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 101/206 (49%), Gaps = 3/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++KG +      Y+L+DV GV Y +  P+ T   L  +G    L     + ++  +L
Sbjct: 1   MIGRLKGILIEKQPPYLLLDVNGVGYELQAPMTTFYRLPSLGHEVVLHTHLSITENLHQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L  V GVG ++A+ +LS + + ++   +   N K + ++PGI  K 
Sbjct: 61  FGFAEQRDRSLFRTLIKVNGVGPKLAVAILSGMESDDIARCVRDNNIKALTRVPGIGQKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +  +        ++    +   I S       A SAL+ LGY    A   
Sbjct: 121 AERLVIELRDRLKNWDLPQGDMLAHGEIQA--IASDNDIYAEAESALIALGYKPVDAAKM 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V S  K++       ++IR+ALR+++
Sbjct: 179 VASAAKQKPEARS-EELIRIALRSLA 203


>gi|146312076|ref|YP_001177150.1| Holliday junction DNA helicase RuvA [Enterobacter sp. 638]
 gi|167012660|sp|A4WBL9|RUVA_ENT38 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|145318952|gb|ABP61099.1| Holliday junction DNA helicase subunit RuvA [Enterobacter sp. 638]
          Length = 203

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 101/204 (49%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L   G    +F +  +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLETGGVGYEVHMPMTCFYELPDAGKEAIIFTQFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  ++   + ++PGI  K 
Sbjct: 61  YGFNNKQERMLFRELIKTNGVGPKLALAILSGMSAHQFVNAVEREDPAALIKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +     +  +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPNGPTSDDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + K     A+   +IR ALRA
Sbjct: 181 VSKIAK---PDANSETLIREALRA 201


>gi|283785600|ref|YP_003365465.1| holliday junction ATP-dependent DNA helicase [Citrobacter rodentium
           ICC168]
 gi|282949054|emb|CBG88657.1| holliday junction ATP-dependent DNA helicase [Citrobacter rodentium
           ICC168]
          Length = 203

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 100/204 (49%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLEAGGVGYEVHMPMTCFYELPESGKEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  ++   + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREDPAALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        ++      A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPAVEDGEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  V +     A    +IR ALRA
Sbjct: 181 VSKVAR---PDASSETLIREALRA 201


>gi|154707705|ref|YP_001423840.1| Holliday junction DNA helicase RuvA [Coxiella burnetii Dugway
           5J108-111]
 gi|189045750|sp|A9KF41|RUVA_COXBN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|154356991|gb|ABS78453.1| holliday junction DNA helicase [Coxiella burnetii Dugway 5J108-111]
          Length = 200

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 98/205 (47%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G I      Y+L++V GV Y I  P+ T   L +      L+    +R+D   L
Sbjct: 1   MIGHLRGIIVEKQPPYLLLEVAGVGYEITAPLSTFYHLPEPQKEILLYTHLIVREDAHTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +D +R+ F  L  V GVG ++A+ +LS I   E V  ++ QN   + +IPG+  K 
Sbjct: 61  YGFHNDHERRLFRALIKVNGVGPKLALAILSGIGPDEFVHCVLNQNIDQLVRIPGVGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E K              +     +    S      +AISAL+ LGY   +A  A
Sbjct: 121 AERLVIETKDGLSRWH------TNDTPSPEGLRSSNTQPTQDAISALMALGYKPQEAKRA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++ K          +IRLAL+ +
Sbjct: 175 IDAIQK---PDLSAETLIRLALKQM 196


>gi|220935403|ref|YP_002514302.1| DNA recombination protein, RuvA [Thioalkalivibrio sp. HL-EbGR7]
 gi|254767396|sp|B8GUJ5|RUVA_THISH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|219996713|gb|ACL73315.1| DNA recombination protein, RuvA [Thioalkalivibrio sp. HL-EbGR7]
          Length = 201

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 69/204 (33%), Positives = 110/204 (53%), Gaps = 6/204 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++L+DVQGV Y I  P+ T   L + G   TL    H+R+D   L
Sbjct: 1   MIGRLRGELVSKQPPFLLLDVQGVGYEIEAPLSTFYDLPEPGGQVTLHTHLHVREDAHVL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +R  F  L  V GVGA++A+ +LS +TA+E    ++  +   + ++PGI  K 
Sbjct: 61  YGFASESERALFRSLIKVTGVGAKMALAILSGMTASEFSRCVMDGDVASLVRLPGIGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ +  SL + V        K  A     P    +A+SALV+LGY   +A+  
Sbjct: 121 AERLVVEMRDRLGSLPAAVTL---TGGKPAAAAARAPDPVSDAVSALVSLGYKPQEASRL 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           + +V   E        +IRLAL+A
Sbjct: 178 ISAV---EGEAERSEDLIRLALKA 198


>gi|153832528|ref|ZP_01985195.1| holliday junction DNA helicase RuvA [Vibrio harveyi HY01]
 gi|148871323|gb|EDL70195.1| holliday junction DNA helicase RuvA [Vibrio harveyi HY01]
          Length = 223

 Score =  186 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 101/205 (49%), Gaps = 4/205 (1%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           IG+++G +       VLI+V G+ Y +  P+     L  +G+   ++    +R+D   L+
Sbjct: 21  IGRLRGTLLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLLY 80

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF +  +R  F  +    GVG ++ +G+LS +TA++ V  +  ++   + ++PG+  K A
Sbjct: 81  GFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDISTLVKLPGVGKKTA 140

Query: 122 SRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
            R++ E+K +     +  +    +      +   +  +    AISAL+ LGY   QA+  
Sbjct: 141 ERLVVEMKDRLKGWGAGDLFTPFTDAAPADSGSAASNNAEEEAISALLALGYKPTQASKV 200

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  + K         Q+IR AL+++
Sbjct: 201 VSQIAK---PDMTSEQLIREALKSM 222


>gi|323496589|ref|ZP_08101642.1| Holliday junction DNA helicase RuvA [Vibrio sinaloensis DSM 21326]
 gi|323318335|gb|EGA71293.1| Holliday junction DNA helicase RuvA [Vibrio sinaloensis DSM 21326]
          Length = 205

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 53/207 (25%), Positives = 103/207 (49%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI+V G+ Y +  P+     L  +G+   ++    +R+D   L
Sbjct: 1   MIGRLRGILIEKQPPELLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TA++ V S+  ++   + ++PG+  K 
Sbjct: 61  YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVASVEREDISTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +        +          + A      S    A+SAL++LGY   QA+
Sbjct: 121 AERLVVEMKDRLKGWSAGDLFTPFTDAAPVDSAPEVVQSSAEEEAVSALLSLGYKPTQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
             V  +L+         ++IR AL+++
Sbjct: 181 KVVSQILQ---PGMSSEELIREALKSM 204


>gi|269963130|ref|ZP_06177465.1| Holliday junction DNA helicase motor protein [Vibrio harveyi 1DA3]
 gi|269832094|gb|EEZ86218.1| Holliday junction DNA helicase motor protein [Vibrio harveyi 1DA3]
          Length = 223

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 100/205 (48%), Gaps = 4/205 (1%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           IG+++G +       VLI+V G+ Y +  P+     L  +G+   ++    +R+D   L+
Sbjct: 21  IGRLRGTLLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLLY 80

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF +  +R  F  +    GVG ++ +G+LS +TA++ V  +  ++   + ++PG+  K A
Sbjct: 81  GFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDISTLVKLPGVGKKTA 140

Query: 122 SRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
            R++ E+K +     +  +    +      +      +    AISAL+ LGY   QA+  
Sbjct: 141 ERLVVEMKDRLKGWGAGDLFTPFTDAAPADSGSAGSNNAEEEAISALLALGYKPTQASKV 200

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  + K         Q+IR AL+++
Sbjct: 201 VSQIAK---PDMTSEQLIREALKSM 222


>gi|156973890|ref|YP_001444797.1| Holliday junction DNA helicase motor protein [Vibrio harveyi ATCC
           BAA-1116]
 gi|156525484|gb|ABU70570.1| hypothetical protein VIBHAR_01600 [Vibrio harveyi ATCC BAA-1116]
          Length = 223

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 101/205 (49%), Gaps = 4/205 (1%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           IG+++G +       VLI+V G+ Y +  P+     L  +G+   ++    +R+D   L+
Sbjct: 21  IGRLRGTLLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLLY 80

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF +  +R  F  +    GVG ++ +G+LS +TA++ V  +  ++   + ++PG+  K A
Sbjct: 81  GFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDISTLVKLPGVGKKTA 140

Query: 122 SRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
            R++ E+K +     +  +    +      +   +  +    AISAL+ LGY   QA+  
Sbjct: 141 ERLVVEMKDRLKGWGAGDLFTPFTDAAPADSGSAASNNAEEEAISALLALGYKPTQASKV 200

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  + K         Q+IR AL+++
Sbjct: 201 VSQIAK---PDMTSEQLIRKALKSM 222


>gi|56460194|ref|YP_155475.1| Holliday junction resolvasome, DNA-binding subunit [Idiomarina
           loihiensis L2TR]
 gi|81363131|sp|Q5QYU4|RUVA_IDILO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|56179204|gb|AAV81926.1| Holliday junction resolvasome, DNA-binding subunit [Idiomarina
           loihiensis L2TR]
          Length = 205

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 64/208 (30%), Positives = 107/208 (51%), Gaps = 5/208 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG I+G +       V++DVQG+ Y I  P+     L  +G+   L     +R+D   L
Sbjct: 1   MIGHIQGVLTSKQPPEVVLDVQGIGYEIQLPMTCFYQLPPVGETIKLITHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+S  +R  F LL   QGVG ++A+ +LS ++A E V ++   +   + ++PG+  K 
Sbjct: 61  YGFISASERSLFRLLLKTQGVGPKLALAILSGMSADEFVMAVNQNDVTRLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQ-QDMSCVNKEQAHICSMP-SFAINAISALVNLGYGQDQAT 178
           A R++ E++ +           D + ++ +       P     +AISAL +LGY ++QA 
Sbjct: 121 AERLVIEMRDRLKDWQPSTPFTDRAPLDSQGMDAREHPADARTDAISALQSLGYKENQAE 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
            A+  V   E N      +IRLAL+ +S
Sbjct: 181 KALQKVYSAEHNS---ETLIRLALKQLS 205


>gi|323495172|ref|ZP_08100257.1| Holliday junction DNA helicase RuvA [Vibrio brasiliensis LMG 20546]
 gi|323310612|gb|EGA63791.1| Holliday junction DNA helicase RuvA [Vibrio brasiliensis LMG 20546]
          Length = 205

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 104/207 (50%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI+V G+ Y +  P+     L  IG+   ++    +R+D   L
Sbjct: 1   MIGRLRGILIEKQPPELLIEVNGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TA++ V S+  ++   + ++PG+  K 
Sbjct: 61  YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVASVEREDVSTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +        +          + A   S  S    A+SAL+ LGY   QA+
Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPYTDAAPVDSAVQASQSSAEEEAVSALLALGYKPTQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
             V  V+K E       Q+IR AL+++
Sbjct: 181 KVVSQVMKPE---MTSEQLIREALKSM 204


>gi|114047572|ref|YP_738122.1| Holliday junction DNA helicase RuvA [Shewanella sp. MR-7]
 gi|117920401|ref|YP_869593.1| Holliday junction DNA helicase RuvA [Shewanella sp. ANA-3]
 gi|123326531|sp|Q0HUZ0|RUVA_SHESR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166200264|sp|A0KWL8|RUVA_SHESA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|113889014|gb|ABI43065.1| Holliday junction DNA helicase RuvA [Shewanella sp. MR-7]
 gi|117612733|gb|ABK48187.1| Holliday junction DNA helicase RuvA [Shewanella sp. ANA-3]
          Length = 205

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 63/207 (30%), Positives = 113/207 (54%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLIDV GV Y +  P+ +   L ++    T++    +R+D   L
Sbjct: 1   MIGRLRGVLIEKQAPEVLIDVNGVGYELQMPLTSFYELPEVNQPTTVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  +R  F LL    GVG ++A+ +LS +TA+E V  +   +   + ++PG+  K 
Sbjct: 61  YGFITKQERSLFRLLIKANGVGPKLALTILSGMTASEFVGCVERDDIVTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E++ K  SL  +SV  +    +    +   ++ S   +AISAL++LGY   QA+
Sbjct: 121 AERLLVEMRDKLKSLMEASVGSEREFVLQSNYSPAPTVNSAEEDAISALISLGYKPPQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            AV +  K+     D   +I+ AL+++
Sbjct: 181 KAVSAAYKE---GMDSETLIKAALKSM 204


>gi|91793239|ref|YP_562890.1| Holliday junction DNA helicase RuvA [Shewanella denitrificans
           OS217]
 gi|122968746|sp|Q12N09|RUVA_SHEDO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|91715241|gb|ABE55167.1| Holliday junction DNA helicase RuvA [Shewanella denitrificans
           OS217]
          Length = 203

 Score =  186 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 107/205 (52%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +   +   +++DV GV Y +  P+ +   L ++    TL+    +R+D   L
Sbjct: 1   MIGRLNGILVEKHAPEIVLDVGGVGYELQVPMTSFYELPELEQSATLYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  +R  F LL    GVG ++A+ +LS +TA E V  +   +   + ++PG+  K 
Sbjct: 61  YGFITKQERALFRLLIKTNGVGPKLALTILSGMTAGEFVSCVERDDIVTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ K  SL      +      +  +     +   +AISALV+LGY   QA+ A
Sbjct: 121 AERLVVEMRDKLKSLLEASVGNEREFMLQTNYTAPAANAEEDAISALVSLGYKPPQASRA 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V    K+     D   +I+LAL+++
Sbjct: 181 VSKAYKE---GMDTETLIKLALKSM 202


>gi|113970239|ref|YP_734032.1| Holliday junction DNA helicase RuvA [Shewanella sp. MR-4]
 gi|123029678|sp|Q0HIZ2|RUVA_SHESM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|113884923|gb|ABI38975.1| Holliday junction DNA helicase RuvA [Shewanella sp. MR-4]
          Length = 205

 Score =  186 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 63/207 (30%), Positives = 113/207 (54%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLIDV GV Y +  P+ +   L ++    T++    +R+D   L
Sbjct: 1   MIGRLRGVLIEKQAPEVLIDVNGVGYELQMPLTSFYELPEVNQPTTVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  +R  F LL    GVG ++A+ +LS +TA+E V  +   +   + ++PG+  K 
Sbjct: 61  YGFITKKERSLFRLLIKANGVGPKLALTILSGMTASEFVGCVERDDIVTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E++ K  SL  +SV  +    +    +   ++ S   +AISAL++LGY   QA+
Sbjct: 121 AERLLVEMRDKLKSLMEASVGSEREFVLQSNYSPAPTVNSAEEDAISALLSLGYKPPQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            AV +  K+     D   +I+ AL+++
Sbjct: 181 KAVSAAYKE---GMDSETLIKAALKSM 204


>gi|296101800|ref|YP_003611946.1| Holliday junction DNA helicase RuvA [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295056259|gb|ADF60997.1| Holliday junction DNA helicase RuvA [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 204

 Score =  186 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 100/205 (48%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++V GV Y ++ P+     L   G    +F +  +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLLEVGGVGYEVHMPMTCFYELPDAGKEAIVFTQFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  ++   + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFRELIKTNGVGPKLALAILSGMSAQQFVNAVEREDPAALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSC-VNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +   L   +    +  V        S       A++ALV LGY   +A+ 
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPGAPVSDDDAEQEAVAALVALGYKPQEASR 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  + K     A    +IR ALRA
Sbjct: 181 MVSKIAK---PDASSETLIREALRA 202


>gi|24373977|ref|NP_718020.1| Holliday junction DNA helicase RuvA [Shewanella oneidensis MR-1]
 gi|38372487|sp|Q8EEF2|RUVA_SHEON RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|24348428|gb|AAN55464.1|AE015684_1 Holliday junction DNA helicase RuvA [Shewanella oneidensis MR-1]
          Length = 205

 Score =  186 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 63/207 (30%), Positives = 112/207 (54%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLIDV GV Y +  P+ +   L ++    T++    +R+D   L
Sbjct: 1   MIGRLRGVLIEKQAPEVLIDVNGVGYELQMPLTSFYELPELNQPTTVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  +R  F LL    GVG ++A+ +LS +TA+E V  +   +   + ++PG+  K 
Sbjct: 61  YGFITKQERSLFRLLIKANGVGPKLALTILSGMTASEFVGCVERDDIVTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E++ K  SL  +SV  +    +    +    + S   +AISAL++LGY   QA+
Sbjct: 121 AERLLVEMRDKLKSLMEASVGSEREFVLQSNYSPAPVVNSAEEDAISALISLGYKPPQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            AV +  K+     D   +I+ AL+++
Sbjct: 181 KAVSAAFKE---GMDSETLIKAALKSM 204


>gi|157830735|pdb|1CUK|A Chain A, Escherichia Coli Ruva Protein At Ph 4.9 And Room
           Temperature
 gi|581226|emb|CAA30119.1| unnamed protein product [Escherichia coli]
          Length = 203

 Score =  186 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 98/204 (48%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ LV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVARLVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + +     A    +IR ALRA
Sbjct: 181 VSKIAR---PDASSETLIREALRA 201


>gi|260772519|ref|ZP_05881435.1| holliday junction DNA helicase RuvA [Vibrio metschnikovii CIP
           69.14]
 gi|260611658|gb|EEX36861.1| holliday junction DNA helicase RuvA [Vibrio metschnikovii CIP
           69.14]
          Length = 205

 Score =  186 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 53/207 (25%), Positives = 103/207 (49%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       ++I+V GV Y +  P+     L  I +   ++    +R+D   L
Sbjct: 1   MIGRLRGLLIEKQPPQIVIEVNGVGYEVQMPMSCFYELPNINEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TA++ V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVSERALFREVIKANGVGPKMGLGILSGMTASQFVACVEREDISTLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSS--VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +     S  +          + + + +  +    AISAL++LGY   QA+
Sbjct: 121 AERLLVEMKDRLKGWGSGDLFTPATDAAPLDHSPVTAEQNAQEEAISALLSLGYKPVQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
             V  + K         Q+IR AL+++
Sbjct: 181 KVVSQMAK---PGMTSEQLIREALKSM 204


>gi|146283144|ref|YP_001173297.1| Holliday junction DNA helicase RuvA [Pseudomonas stutzeri A1501]
 gi|166230587|sp|A4VNA4|RUVA_PSEU5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|145571349|gb|ABP80455.1| Holliday junction DNA helicase RuvA [Pseudomonas stutzeri A1501]
 gi|327481497|gb|AEA84807.1| Holliday junction DNA helicase RuvA [Pseudomonas stutzeri DSM 4166]
          Length = 201

 Score =  185 bits (470), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 114/205 (55%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV G+ Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGTLAEKQPPHMILDVNGIGYEVEVPMTTLYRLPAVGEPVTLHTHLVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++ V+ +IPG+  K 
Sbjct: 61  YGFAEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSVLVRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  S+    ++ +  E     ++ S   +A+SAL++LG+   +A+ A
Sbjct: 121 AERLLVELKDRFKAWESMPA--IATLVVEPGSKTAVTSAENDAVSALISLGFKPQEASRA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++ ++        ++IR AL+ +
Sbjct: 179 VSAIQEEN---LSSEEMIRRALKGM 200


>gi|261252501|ref|ZP_05945074.1| holliday junction DNA helicase RuvA [Vibrio orientalis CIP 102891]
 gi|260935892|gb|EEX91881.1| holliday junction DNA helicase RuvA [Vibrio orientalis CIP 102891]
          Length = 205

 Score =  185 bits (470), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 55/207 (26%), Positives = 102/207 (49%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI+V G+ Y +  P+     L  +G+   ++    +R+D   L
Sbjct: 1   MIGRLRGILIEKQPPELLIEVNGIGYEVQMPMSCFYELPNLGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TA++ V S+  ++   + ++PG+  K 
Sbjct: 61  YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVASVEREDISTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP--SFAINAISALVNLGYGQDQAT 178
           A R++ E+K +    S+               +      S    A+SAL+ LGY   QA+
Sbjct: 121 AERLVVEMKDRLKGWSAGDLFTPFTDAAPADSVPQATQESAEEEAVSALLALGYKPTQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
             V  V K +       Q+IR AL+++
Sbjct: 181 KVVSQVKKAD---MSSEQLIREALKSM 204


>gi|237731899|ref|ZP_04562380.1| holliday junction helicase subunit B [Citrobacter sp. 30_2]
 gi|226907438|gb|EEH93356.1| holliday junction helicase subunit B [Citrobacter sp. 30_2]
          Length = 203

 Score =  185 bits (470), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 55/204 (26%), Positives = 98/204 (48%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLLETGGVGYEVHMPMTCFYELPEAGQEAIIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREELGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPTTDDTEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + +     A    +IR ALRA
Sbjct: 181 VSKIAR---PDASSETLIREALRA 201


>gi|15641848|ref|NP_231480.1| Holliday junction DNA helicase RuvA [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121591344|ref|ZP_01678632.1| Holliday junction DNA helicase RuvA [Vibrio cholerae 2740-80]
 gi|121730273|ref|ZP_01682649.1| Holliday junction DNA helicase RuvA [Vibrio cholerae V52]
 gi|147675231|ref|YP_001217380.1| Holliday junction DNA helicase RuvA [Vibrio cholerae O395]
 gi|153824054|ref|ZP_01976721.1| Holliday junction DNA helicase RuvA [Vibrio cholerae B33]
 gi|227081975|ref|YP_002810526.1| Holliday junction DNA helicase RuvA [Vibrio cholerae M66-2]
 gi|229508057|ref|ZP_04397562.1| holliday junction DNA helicase RuvA [Vibrio cholerae BX 330286]
 gi|229511704|ref|ZP_04401183.1| holliday junction DNA helicase RuvA [Vibrio cholerae B33]
 gi|229518843|ref|ZP_04408286.1| holliday junction DNA helicase RuvA [Vibrio cholerae RC9]
 gi|229607618|ref|YP_002878266.1| Holliday junction DNA helicase RuvA [Vibrio cholerae MJ-1236]
 gi|254848932|ref|ZP_05238282.1| holliday junction DNA helicase motor protein [Vibrio cholerae MO10]
 gi|255745394|ref|ZP_05419343.1| holliday junction DNA helicase RuvA [Vibrio cholera CIRS 101]
 gi|298498115|ref|ZP_07007922.1| Holliday junction DNA helicase RuvA [Vibrio cholerae MAK 757]
 gi|20455267|sp|Q9KR01|RUVA_VIBCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|172047659|sp|A5F761|RUVA_VIBC3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254767399|sp|C3LNE9|RUVA_VIBCM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|9656374|gb|AAF94994.1| Holliday junction DNA helicase RuvA [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121546808|gb|EAX56974.1| Holliday junction DNA helicase RuvA [Vibrio cholerae 2740-80]
 gi|121627975|gb|EAX60536.1| Holliday junction DNA helicase RuvA [Vibrio cholerae V52]
 gi|126518426|gb|EAZ75649.1| Holliday junction DNA helicase RuvA [Vibrio cholerae B33]
 gi|146317114|gb|ABQ21653.1| Holliday junction DNA helicase RuvA [Vibrio cholerae O395]
 gi|227009863|gb|ACP06075.1| Holliday junction DNA helicase RuvA [Vibrio cholerae M66-2]
 gi|227013744|gb|ACP09954.1| Holliday junction DNA helicase RuvA [Vibrio cholerae O395]
 gi|229343532|gb|EEO08507.1| holliday junction DNA helicase RuvA [Vibrio cholerae RC9]
 gi|229351669|gb|EEO16610.1| holliday junction DNA helicase RuvA [Vibrio cholerae B33]
 gi|229355562|gb|EEO20483.1| holliday junction DNA helicase RuvA [Vibrio cholerae BX 330286]
 gi|229370273|gb|ACQ60696.1| holliday junction DNA helicase RuvA [Vibrio cholerae MJ-1236]
 gi|254844637|gb|EET23051.1| holliday junction DNA helicase motor protein [Vibrio cholerae MO10]
 gi|255737224|gb|EET92620.1| holliday junction DNA helicase RuvA [Vibrio cholera CIRS 101]
 gi|297542448|gb|EFH78498.1| Holliday junction DNA helicase RuvA [Vibrio cholerae MAK 757]
          Length = 204

 Score =  185 bits (470), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 101/206 (49%), Gaps = 4/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI+V G+ Y +  P+  +  L  IG+   ++    +R+D   L
Sbjct: 1   MIGRLRGTLIEKLPPQILIEVGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ + +LS +TA + V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVSERALFREVIKANGVGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +     +  +    +      +      +    A+SAL+ LGY   QA+ 
Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPATDAAPVDSTPVIAQNAQEEAMSALLALGYKPPQASK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
           AV  V K         ++IR AL+++
Sbjct: 181 AVSQVAKA---GMSSEELIREALKSM 203


>gi|315180569|gb|ADT87483.1| Holliday junction DNA helicase motor protein [Vibrio furnissii NCTC
           11218]
          Length = 205

 Score =  185 bits (469), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 99/207 (47%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLI+V G+ Y +  P+     L  IGD   ++    +R+D   L
Sbjct: 1   MIGRLRGTLIEKQPPQVLIEVGGIGYEVQMPMSCFYELANIGDEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ + +LS +TA++ V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVNERALFREVIKANGVGPKMGLAILSGMTASQFVACVEREDISTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +        +          +        +    A+SAL+ LGY   QA+
Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPATDAAPLDAMGASHDQNAEEEAVSALLALGYKPAQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            AV  V +         Q+IR AL+++
Sbjct: 181 KAVSQVSQ---PDMTSEQLIREALKSM 204


>gi|254482531|ref|ZP_05095770.1| Holliday junction DNA helicase RuvA [marine gamma proteobacterium
           HTCC2148]
 gi|214037222|gb|EEB77890.1| Holliday junction DNA helicase RuvA [marine gamma proteobacterium
           HTCC2148]
          Length = 204

 Score =  185 bits (469), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 100/205 (48%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+GN+       +L++V GV Y +  P+ TL  L ++G   +L     +R+D   L
Sbjct: 1   MIGRIRGNLVHKQPPVILVEVGGVGYELQVPMTTLFQLPELGAEVSLVTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + DR  F  L  V GVG ++A+ +LS + +      +   +   +  +PG+  K 
Sbjct: 61  YGFAQERDRALFRQLIKVSGVGPKLALTILSGMDSASFARCVQRDDISSLVALPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ K       +  ++      Q+          +A  AL+ LGY   +A   
Sbjct: 121 AERLLVEMRDKLKDWLGQLDGELPSSGPAQSAAPV--DRVADAEGALIALGYKPAEAARM 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +V   + +I +   +IR AL+++
Sbjct: 179 VAAV--NDDSIENSEDLIRRALKSM 201


>gi|315126271|ref|YP_004068274.1| Holliday junction DNA helicase motor protein [Pseudoalteromonas sp.
           SM9913]
 gi|315014785|gb|ADT68123.1| Holliday junction DNA helicase motor protein [Pseudoalteromonas sp.
           SM9913]
          Length = 205

 Score =  185 bits (469), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 57/207 (27%), Positives = 105/207 (50%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L++V GV Y +  P+     L K+GD   ++    +R+D   L
Sbjct: 1   MIGRLNGVLVEKQPPEILLEVSGVGYEVQMPMTCFYDLPKVGDNAIVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L    GVG ++ + +LS ++A + V  +  +++  + ++PG+  K 
Sbjct: 61  FGFNNKTERALFRELLKANGVGPKLGLAILSGMSAQQFVSCVNNEDATALVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDM--SCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +  +  + +      S V +  +      + A +A+SALV LGY   QA 
Sbjct: 121 AERLVLEMKDRLKNWGNDLFTPFSDSAVIEPASDATIANNAADDAVSALVALGYKLPQAQ 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            AV SV K          +I+ +L+++
Sbjct: 181 KAVKSVSK---PDMSTEVLIKESLKSM 204


>gi|320539865|ref|ZP_08039524.1| component of RuvABC resolvasome, regulatory subunit [Serratia
           symbiotica str. Tucson]
 gi|320030051|gb|EFW12071.1| component of RuvABC resolvasome, regulatory subunit [Serratia
           symbiotica str. Tucson]
          Length = 204

 Score =  185 bits (469), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 105/205 (51%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++GNI       VL++  GV Y +Y P+     L ++G    +F    +R+D   L
Sbjct: 1   MIGRLRGNILEKQPPLVLLEANGVGYEVYMPMTCFYQLPELGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PG+  K 
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAVEHEEITTLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI-CSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +   L+  +  + S  +     +  +       A+SALV LGY   +A+ 
Sbjct: 121 AERLVVEMKDRFKGLNGDLFTNSSGSSLPATAVQTADNDTEAEAVSALVALGYKPQEASR 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  + K   + AD   +IR ALRA
Sbjct: 181 MVSKIAK---SGADCETLIRDALRA 202


>gi|283832740|ref|ZP_06352481.1| holliday junction DNA helicase RuvA [Citrobacter youngae ATCC
           29220]
 gi|291072423|gb|EFE10532.1| holliday junction DNA helicase RuvA [Citrobacter youngae ATCC
           29220]
          Length = 203

 Score =  185 bits (469), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 55/204 (26%), Positives = 97/204 (47%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLETGGVGYEVHMPMTCFYELPEAGQEAIIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREELGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +                A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPVTDDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + +     A    +IR ALRA
Sbjct: 181 VSKIAR---PDASSETLIREALRA 201


>gi|330502219|ref|YP_004379088.1| Holliday junction DNA helicase RuvA [Pseudomonas mendocina NK-01]
 gi|328916505|gb|AEB57336.1| Holliday junction DNA helicase RuvA [Pseudomonas mendocina NK-01]
          Length = 202

 Score =  184 bits (468), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 62/204 (30%), Positives = 109/204 (53%), Gaps = 5/204 (2%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           IG+++G +      ++L+DV GV Y +  P+ TL  L  +G+  TL     +R+D   L+
Sbjct: 3   IGRLRGTLAEKQPPHLLLDVNGVGYELEVPMTTLYRLPAVGEPVTLHAHLVVREDAHLLY 62

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + ++PG+  K A
Sbjct: 63  GFFEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTAALVKVPGVGKKTA 122

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
            R++ ELK +  +  S+       V  + A   S  S   +A+SAL++LGY   +A+ AV
Sbjct: 123 ERLLVELKDRFKAWESIPSIAPLVVEPQLAQAVS--SAENDAVSALISLGYKPQEASRAV 180

Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205
            +V +   +      +IR ALR +
Sbjct: 181 AAVKE---DGMSSEDLIRRALRGM 201


>gi|317491787|ref|ZP_07950222.1| Holliday junction DNA helicase RuvA [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316920221|gb|EFV41545.1| Holliday junction DNA helicase RuvA [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 204

 Score =  184 bits (468), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L ++G    +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPEVLLEANGVGYEVHMPMTCFYELPELGQEVIIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V GVG ++A+ +LS ++A + V +I  +    + ++PG+  K 
Sbjct: 61  YGFNNKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAIEREEVSTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA-HICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +   L+  +  + S +    A    S       A+SAL+ LGY   +A+ 
Sbjct: 121 AERLVVEMKDRFKGLTGDLFNNHSDLPVPAAKKPASEIDAEGEAVSALIALGYKPQEASR 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +  + K     AD   +IR ALRA
Sbjct: 181 MISKIAK---PDADSETLIRDALRA 202


>gi|260768875|ref|ZP_05877809.1| holliday junction DNA helicase RuvA [Vibrio furnissii CIP 102972]
 gi|260616905|gb|EEX42090.1| holliday junction DNA helicase RuvA [Vibrio furnissii CIP 102972]
          Length = 205

 Score =  184 bits (468), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 99/207 (47%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLI+V G+ Y +  P+     L  IGD   ++    +R+D   L
Sbjct: 1   MIGRLRGTLIEKQPPQVLIEVGGIGYEVQMPMSCFYELANIGDEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ + +LS +TA++ V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVNERALFREVIKANGVGPKMGLAILSGMTASQFVACVEREDISTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +        +          +        +    A+SAL+ LGY   QA+
Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPATDAAPLDAMGAIHDQNAEEEAVSALLALGYKPAQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            AV  V +         Q+IR AL+++
Sbjct: 181 KAVSQVAQ---PDMTSEQLIREALKSM 204


>gi|332305758|ref|YP_004433609.1| Holliday junction DNA helicase RuvA [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173087|gb|AEE22341.1| Holliday junction DNA helicase RuvA [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 207

 Score =  184 bits (468), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 59/209 (28%), Positives = 103/209 (49%), Gaps = 7/209 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +       VLIDV GV Y I  P+ +   L ++G+  +++    +R+D   L
Sbjct: 1   MIGRIRGTLIEKQPPEVLIDVSGVGYEIQIPMTSFYQLPEVGEQASVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  L    GVG ++A+ +LS ++    ++ +  ++   + ++PG+  K 
Sbjct: 61  FGFADKNERAVFRELIKASGVGPKLALTILSGMSGQNFMQCVAHEDITALVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQ----DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ E++ +   LS          +   N  +    +       A+SAL+ LGY   Q
Sbjct: 121 AERLVIEMRDRFKKLSLEQSAGDDFTLQGSNGIENTFVTSTDAKEEALSALIALGYKAQQ 180

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A+  + SV  K+        +IR ALRA+
Sbjct: 181 ASKVINSVYVKD---ITSEALIREALRAM 206


>gi|254780553|ref|YP_003064966.1| Holliday junction DNA helicase RuvA [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040230|gb|ACT57026.1| Holliday junction DNA helicase RuvA [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 207

 Score =  184 bits (468), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 207/207 (100%), Positives = 207/207 (100%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL
Sbjct: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI
Sbjct: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA
Sbjct: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207
           VVSVLKKEKNIADDSQIIRLALRAISC
Sbjct: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207


>gi|119472454|ref|ZP_01614553.1| Holliday junction DNA helicase motor protein [Alteromonadales
           bacterium TW-7]
 gi|119444891|gb|EAW26190.1| Holliday junction DNA helicase motor protein [Alteromonadales
           bacterium TW-7]
          Length = 205

 Score =  184 bits (467), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 104/207 (50%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L++V GV Y +  P+     L K+G+   ++    +R+D   L
Sbjct: 1   MIGRLNGILVEKQPPEILLEVSGVGYEVQMPMTCFYDLPKVGENTIVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L    GVG ++ + +LS ++A + V  +  +++  + ++PG+  K 
Sbjct: 61  FGFNNKTERALFRELLKANGVGPKLGLAILSGMSAQQFVSCVNNEDATSLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS--MPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +     + +    S     + H  +    + A +A+SALV LGY   QA 
Sbjct: 121 AERLVLEMKDRLKDWGNDLFTPFSDSAVIEPHSDALVANNAADDAVSALVALGYKLPQAQ 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            AV SV K          +I+ +L+++
Sbjct: 181 KAVKSVSK---PDMSTEVLIKESLKSM 204


>gi|254516709|ref|ZP_05128768.1| Holliday junction DNA helicase RuvA [gamma proteobacterium NOR5-3]
 gi|219675132|gb|EED31499.1| Holliday junction DNA helicase RuvA [gamma proteobacterium NOR5-3]
          Length = 203

 Score =  184 bits (467), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 62/204 (30%), Positives = 101/204 (49%), Gaps = 6/204 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +   +   +L+DV GV Y I  P+ TL  L  +GD  TL     +R+D   L
Sbjct: 1   MIGRISGTLLHKHPPEILVDVAGVGYEIQVPMTTLFQLPALGDAVTLLTHHAVREDAQTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+S+ DR+ F  L  V GVG ++A+ +LS + +     ++   +   +  +PG+  K 
Sbjct: 61  YGFVSERDRELFRHLIKVSGVGPKLALTILSGMDSDSFARAVQADDLTALVALPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ +       +      +    A          +A  ALV+LGY   +A   
Sbjct: 121 AERLLIEMRDRLSGWLDKITDTGGGM----ARPIPASDKLSDAEEALVSLGYKPAEAARL 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  V     +I D  ++IRLALR+
Sbjct: 177 VARV--DNDDITDSEELIRLALRS 198


>gi|109899252|ref|YP_662507.1| Holliday junction DNA helicase RuvA [Pseudoalteromonas atlantica
           T6c]
 gi|109701533|gb|ABG41453.1| Holliday junction DNA helicase subunit RuvA [Pseudoalteromonas
           atlantica T6c]
          Length = 209

 Score =  184 bits (467), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 59/209 (28%), Positives = 103/209 (49%), Gaps = 7/209 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +       VLIDV GV Y I  P+ +   L ++G   +++    +R+D   L
Sbjct: 3   MIGRIRGTVVEKQPPEVLIDVAGVGYEIQIPMTSFYQLPEVGAEASVYTHFVVREDAQLL 62

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  L    GVG ++A+ +LS ++    ++ +  ++   + ++PG+  K 
Sbjct: 63  FGFADKNERAVFRELIKASGVGPKLALTILSGMSGQHFMQCVAHEDITALVKLPGVGKKT 122

Query: 121 ASRIMTELKGKAISLSSVVQQD----MSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ E++ +   LS          +   N  +    +       A+SAL+ LGY   Q
Sbjct: 123 AERLVIEMRDRFKKLSLEQSASDDFALQGNNSIENTFVTSSDAKEEALSALIALGYKAPQ 182

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A+  + SV  K+       ++IR ALRA+
Sbjct: 183 ASKVINSVYVKD---ITSEELIREALRAM 208


>gi|254506186|ref|ZP_05118330.1| Holliday junction DNA helicase RuvA [Vibrio parahaemolyticus 16]
 gi|219551004|gb|EED27985.1| Holliday junction DNA helicase RuvA [Vibrio parahaemolyticus 16]
          Length = 223

 Score =  184 bits (466), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 103/205 (50%), Gaps = 4/205 (1%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           IG+++G +       +LI+V G+ Y +  P+     L  +G+   ++    +R+D   L+
Sbjct: 21  IGRLRGILIEKQPPELLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLLY 80

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF +  +R  F  +    GVG ++ +G+LS +TA++ V S+  ++   + ++PG+  K A
Sbjct: 81  GFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVASVEREDISTLVKLPGVGKKTA 140

Query: 122 SRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
            R++ E+K +     +  +    +      +   +  S    A+SAL+ LGY   QA+  
Sbjct: 141 ERLVVEMKDRLKGWSAGDLFTPFTDAAPVDSTPTATNSAEEEAVSALLALGYKPTQASKV 200

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  ++K         ++IR AL+++
Sbjct: 201 VAQIIK---PGMSSEELIRDALKSM 222


>gi|227111608|ref|ZP_03825264.1| Holliday junction DNA helicase RuvA [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 205

 Score =  184 bits (466), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+  GV Y ++ P+     L ++     +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPQVLIEANGVGYEVHMPMTCFYELPELNQEAIIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  L  V GVG ++A+ +LS ++AT+ V ++  +    + ++PG+  K 
Sbjct: 61  FGFNDKQERALFRELIKVNGVGPKLALAILSGMSATQFVSAVEREEIGALIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMS--CVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   LS  +   +S   +    A    +      A +ALV LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLSGDLFNPVSDIPLASPAAADSRVSDPETEAAAALVALGYKPQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             +  + +     AD   +IR ALRA
Sbjct: 181 RMISKIAR---PDADCETLIRDALRA 203


>gi|77360814|ref|YP_340389.1| Holliday junction DNA helicase motor protein [Pseudoalteromonas
           haloplanktis TAC125]
 gi|90135604|sp|Q3IIJ1|RUVA_PSEHT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|76875725|emb|CAI86946.1| Holliday junction helicase, subunit A [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 205

 Score =  184 bits (466), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 106/207 (51%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L++V GV Y +  P+     L K+G+   ++    +R+D   L
Sbjct: 1   MIGRLNGILVEKQPPEILLEVSGVGYEVQMPMTCFYDLPKVGESAIVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++R  F  L    GVG ++ + +LS ++A + V  +  ++S  + ++PG+  K 
Sbjct: 61  FGFNNKVERALFRELLKANGVGPKLGLAILSGMSAQQFVSCVNNEDSTSLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQ--AHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +  +  + +    S     +  +      + A +A+SALV+LGY   QA 
Sbjct: 121 AERLVLEMKDRLKNWGNDLFTPFSDSAVIEPFSDATIANNAADDAVSALVSLGYKLPQAQ 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            AV SV K          +I+ +L+++
Sbjct: 181 KAVKSVSK---PDMSTEVLIKESLKSM 204


>gi|262171190|ref|ZP_06038868.1| holliday junction DNA helicase RuvA [Vibrio mimicus MB-451]
 gi|261892266|gb|EEY38252.1| holliday junction DNA helicase RuvA [Vibrio mimicus MB-451]
          Length = 204

 Score =  184 bits (466), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 101/206 (49%), Gaps = 4/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI++ G+ Y +  P+  +  L  IG+   ++    +R+D   L
Sbjct: 1   MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ + +LS +TA + V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVSERALFREVIKANGVGPKMGLAILSGMTANQFVFCVEKEDISTLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +     +  +    +      +      +    AISAL+ LGY   QA+ 
Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPATDAAPIDSAPAIAQNAQEEAISALLALGYKPPQASK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
           AV  V K         ++IR AL+++
Sbjct: 181 AVSQVAKA---GMSSEELIREALKSM 203


>gi|261211909|ref|ZP_05926196.1| holliday junction DNA helicase RuvA [Vibrio sp. RC341]
 gi|260839259|gb|EEX65891.1| holliday junction DNA helicase RuvA [Vibrio sp. RC341]
          Length = 204

 Score =  184 bits (466), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 51/206 (24%), Positives = 100/206 (48%), Gaps = 4/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI+V G+ Y +  P+  +  L  IG+   ++    +R+D   L
Sbjct: 1   MIGRLRGTLIEKLPPQILIEVGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ + +LS +TA + V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVSERALFREVIKANGVGPKMGLAILSGMTANQFVSCVEKEDISTLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +     +  +    +      +      +    A+SAL+ LGY   QA+ 
Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPATDAAPIDSVPMMAQNAQEEAVSALLALGYKPPQASK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            V  V K         ++IR AL+++
Sbjct: 181 VVSQVAKA---GMSCEELIREALKSM 203


>gi|295095544|emb|CBK84634.1| Holliday junction DNA helicase subunit RuvA [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 231

 Score =  183 bits (465), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 4/204 (1%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           IG+++G I       VL++V GV Y ++ P+     L + G    +F +  +R+D   L+
Sbjct: 29  IGRLRGIIIEKQPPLVLLEVGGVGYEVHMPMTCFYELPEAGKEAVVFTQFVVREDAQLLY 88

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  ++   + ++PGI  K A
Sbjct: 89  GFNNKQERTLFRELIKTNGVGPKLALAILSGMSAPQFVNAVEREDPAALIKLPGIGKKTA 148

Query: 122 SRIMTELKGKAISLSSVVQQDMSC-VNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
            R++ E+K +   L   +    +  V        S       A++ALV LGY   +A+  
Sbjct: 149 ERLIVEMKDRFKGLHGDLFTPAADLVLTSPGAPASDDDAEQEAVAALVALGYKPQEASRM 208

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + K     A    +IR ALRA
Sbjct: 209 VSKIAK---PDASSETLIREALRA 229


>gi|117618993|ref|YP_858104.1| Holliday junction DNA helicase RuvA [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|166229627|sp|A0KPA3|RUVA_AERHH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|117560400|gb|ABK37348.1| Holliday junction DNA helicase RuvA [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 204

 Score =  183 bits (465), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 98/206 (47%), Gaps = 4/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VL++V GV Y +  P+     L +IG   T+     +R+D   L
Sbjct: 1   MIGRLRGVVIEKQPPEVLLEVGGVGYEVQMPMSCFYDLPEIGKEATIHTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L    GVG ++A+ +LS +TAT+ V S+  +    + ++PG+  K 
Sbjct: 61  YGFNHKQERALFRELIKTNGVGPKLALAILSGMTATQFVLSVEREEISSLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +     S  +          +      P  +  A SALV LGY   QA+ 
Sbjct: 121 AERLVVEMKDRLKGWVSHDLFSPAEITLPARESALRAPDSSEEAASALVALGYKPQQASQ 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            V  V     +      IIR ALR++
Sbjct: 181 IVSKVAA---DGMSVEDIIREALRSL 203


>gi|161502989|ref|YP_001570101.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864336|gb|ABX20959.1| hypothetical protein SARI_01051 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 228

 Score =  183 bits (465), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 55/203 (27%), Positives = 97/203 (47%), Gaps = 3/203 (1%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           IG+++G I       VL++  GV Y ++ P+     L + G    +F    +R+D   L+
Sbjct: 27  IGRLRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPESGKEAIIFTHFVVREDAQLLY 86

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  ++   + ++PGI  K A
Sbjct: 87  GFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREDPAALVKLPGIGKKTA 146

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
            R++ E+K +   L   +      +        +       A++ALV LGY   +A+  V
Sbjct: 147 ERLIVEMKDRFKGLHGDLFTPAVDLVLMSPASPTSEDAEQEAVAALVALGYKPQEASRMV 206

Query: 182 VSVLKKEKNIADDSQIIRLALRA 204
             V   +   A    +IR ALRA
Sbjct: 207 SKVAHSD---ASSETLIRDALRA 226


>gi|229515226|ref|ZP_04404686.1| holliday junction DNA helicase RuvA [Vibrio cholerae TMA 21]
 gi|229347931|gb|EEO12890.1| holliday junction DNA helicase RuvA [Vibrio cholerae TMA 21]
          Length = 204

 Score =  183 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 51/206 (24%), Positives = 101/206 (49%), Gaps = 4/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI++ G+ Y +  P+  +  L  IG+   ++    +R+D   L
Sbjct: 1   MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ + +LS +TA + V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVNERALFREVIKANGVGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +     +  +    +      +      +    A+SAL+ LGY   QA+ 
Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPTTDAAPVDSTPVIAQNAQEEAMSALLALGYKPPQASK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
           AV  V K         ++IR AL+++
Sbjct: 181 AVSQVAKA---GMSSEELIREALKSM 203


>gi|297579365|ref|ZP_06941293.1| Holliday junction DNA helicase RuvA [Vibrio cholerae RC385]
 gi|297536959|gb|EFH75792.1| Holliday junction DNA helicase RuvA [Vibrio cholerae RC385]
          Length = 204

 Score =  183 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 51/206 (24%), Positives = 100/206 (48%), Gaps = 4/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI++ G+ Y +  P+  +  L  IG+   ++    +R+D   L
Sbjct: 1   MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ + +LS +TA + V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVNERALFREVIKANGVGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +        +    +      +      +    A+SAL+ LGY   QA+ 
Sbjct: 121 AERLVVEMKDRLKGWGVGDLFTPATDAAPVDSTPVIAQNAQEEAMSALLALGYKPPQASK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
           AV  V K         ++IR AL+++
Sbjct: 181 AVSQVAKA---GMSSEELIREALKSM 203


>gi|328473203|gb|EGF44051.1| Holliday junction DNA helicase RuvA [Vibrio parahaemolyticus 10329]
          Length = 204

 Score =  183 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 102/206 (49%), Gaps = 4/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLI+V G+ Y +  P+     L  IG+   ++    +R+D   L
Sbjct: 1   MIGRLRGILLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TA++ V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDVSTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +     +  +    +      +   S  S    A+SAL+ LGY   QA+ 
Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPFTDAAPTDSASASSNSAEEEAVSALLALGYKPTQASK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            V  + K         Q+IR AL+++
Sbjct: 181 VVSQIAK---PDMSSEQLIREALKSM 203


>gi|28897825|ref|NP_797430.1| Holliday junction DNA helicase RuvA [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260876984|ref|ZP_05889339.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus
           AN-5034]
 gi|260901352|ref|ZP_05909747.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus
           AQ4037]
 gi|31076902|sp|Q87QU8|RUVA_VIBPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|28806038|dbj|BAC59314.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308093747|gb|EFO43442.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus
           AN-5034]
 gi|308109588|gb|EFO47128.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus
           AQ4037]
          Length = 204

 Score =  183 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 102/206 (49%), Gaps = 4/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLI+V G+ Y +  P+     L  IG+   ++    +R+D   L
Sbjct: 1   MIGRLRGILLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TA++ V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDVSTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +     +  +    +      +   S  S    A+SAL+ LGY   QA+ 
Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPFTDAAPTDSAAASSNSAEEEAVSALLALGYKPTQASK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            V  + K         Q+IR AL+++
Sbjct: 181 VVSQIAK---PDMSSEQLIREALKSM 203


>gi|153217384|ref|ZP_01951135.1| Holliday junction DNA helicase RuvA [Vibrio cholerae 1587]
 gi|153830574|ref|ZP_01983241.1| Holliday junction DNA helicase RuvA [Vibrio cholerae 623-39]
 gi|229520306|ref|ZP_04409732.1| holliday junction DNA helicase RuvA [Vibrio cholerae TM 11079-80]
 gi|229523864|ref|ZP_04413269.1| holliday junction DNA helicase RuvA [Vibrio cholerae bv. albensis
           VL426]
 gi|229529131|ref|ZP_04418521.1| holliday junction DNA helicase RuvA [Vibrio cholerae 12129(1)]
 gi|124113602|gb|EAY32422.1| Holliday junction DNA helicase RuvA [Vibrio cholerae 1587]
 gi|148873936|gb|EDL72071.1| Holliday junction DNA helicase RuvA [Vibrio cholerae 623-39]
 gi|229332905|gb|EEN98391.1| holliday junction DNA helicase RuvA [Vibrio cholerae 12129(1)]
 gi|229337445|gb|EEO02462.1| holliday junction DNA helicase RuvA [Vibrio cholerae bv. albensis
           VL426]
 gi|229342672|gb|EEO07664.1| holliday junction DNA helicase RuvA [Vibrio cholerae TM 11079-80]
 gi|327484398|gb|AEA78805.1| Holliday junction DNA helicase RuvA [Vibrio cholerae LMA3894-4]
          Length = 204

 Score =  183 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 51/206 (24%), Positives = 101/206 (49%), Gaps = 4/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI++ G+ Y +  P+  +  L  IG+   ++    +R+D   L
Sbjct: 1   MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ + +LS +TA + V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVNERALFREVIKANGVGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +     +  +    +      +      +    A+SAL+ LGY   QA+ 
Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPATDAAPVDSTPVIAQNAQEEAMSALLALGYKPPQASK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
           AV  V K         ++IR AL+++
Sbjct: 181 AVSQVAKA---GMSSEELIREALKSM 203


>gi|258621408|ref|ZP_05716442.1| Holliday junction DNA helicase motor protein [Vibrio mimicus VM573]
 gi|258626836|ref|ZP_05721643.1| Holliday junction DNA helicase motor protein [Vibrio mimicus VM603]
 gi|262165955|ref|ZP_06033692.1| holliday junction DNA helicase RuvA [Vibrio mimicus VM223]
 gi|258580883|gb|EEW05825.1| Holliday junction DNA helicase motor protein [Vibrio mimicus VM603]
 gi|258586796|gb|EEW11511.1| Holliday junction DNA helicase motor protein [Vibrio mimicus VM573]
 gi|262025671|gb|EEY44339.1| holliday junction DNA helicase RuvA [Vibrio mimicus VM223]
          Length = 204

 Score =  183 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 101/206 (49%), Gaps = 4/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI++ G+ Y +  P+  +  L  IG+   ++    +R+D   L
Sbjct: 1   MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ + +LS +TA + V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVSERALFREVIKANGVGPKMGLAILSGMTANQFVSCVEKEDISTLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +     +  +    +      +      +    AISAL+ LGY   QA+ 
Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPATDAAPIDSAPAIAQNAQEEAISALLALGYKPPQASK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
           AV  V K         ++IR AL+++
Sbjct: 181 AVSQVAKA---GMSSEELIREALKSM 203


>gi|110833613|ref|YP_692472.1| Holliday junction DNA helicase RuvA [Alcanivorax borkumensis SK2]
 gi|110646724|emb|CAL16200.1| Holliday junction DNA helicase RuvA [Alcanivorax borkumensis SK2]
          Length = 201

 Score =  183 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 99/206 (48%), Gaps = 7/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L+DV GV Y +  P+     L + G   TL     +R+D   L
Sbjct: 2   MIGQLRGTLLEKRPPVLLLDVNGVGYEVEAPMTVFYDLPEAGAELTLHTHFVVREDAQLL 61

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  V GVG ++A+ +LS I A  L   I  Q++  + ++PGI  K 
Sbjct: 62  YGFADRYERELFRALIKVNGVGPKMALAILSGIEADRLARCIQDQDTTSLVKVPGIGKKT 121

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ +   +          V+ +Q           +AI+AL  LGY    A  A
Sbjct: 122 AERLVIEMRDRLDKIDGGPVSVPGRVDTDQPD-----DARSDAIAALEALGYRNKDAAVA 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V      ++      Q+IR AL++++
Sbjct: 177 VGKAA--DQEGMSSEQLIRKALKSLA 200


>gi|290475277|ref|YP_003468165.1| Holliday junction helicase subunit A [Xenorhabdus bovienii SS-2004]
 gi|289174598|emb|CBJ81392.1| Holliday junction helicase, subunit A [Xenorhabdus bovienii
           SS-2004]
          Length = 205

 Score =  183 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 104/206 (50%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VL++  GV Y ++ P+     L +IG   TLF +  +R+D   L
Sbjct: 1   MIGRLRGTVLEKQPPLVLLETNGVGYEVHMPMTCFYELPEIGQEATLFTQFIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V +I  +    + ++PG+  K 
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAIEQEAITSLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN--KEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   L+  +    + +N         S       A SALV+LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNQSNDINLPAVAKQANSNTDIEAEAASALVSLGYKLQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             V  V K     AD   +IR ALRA
Sbjct: 181 RMVSKVAK---PGADCETLIREALRA 203


>gi|146306303|ref|YP_001186768.1| Holliday junction DNA helicase motor protein [Pseudomonas mendocina
           ymp]
 gi|145574504|gb|ABP84036.1| Holliday junction DNA helicase subunit RuvA [Pseudomonas mendocina
           ymp]
          Length = 202

 Score =  183 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 108/205 (52%), Gaps = 5/205 (2%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           IG+++G +      ++L+DV GV Y +  P+ TL  L  +G+  TL     +R+D   L+
Sbjct: 3   IGRLRGTLAEKQPPHLLLDVNGVGYELEVPMTTLYRLPAVGETLTLHTHQVVREDAHLLY 62

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + ++PG+  K A
Sbjct: 63  GFFEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTAALTKVPGVGKKTA 122

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
            R++ ELK +  +  ++       V        S  S   +A+SAL++LGY   +A+ AV
Sbjct: 123 ERLLVELKDRFKAWETMPAIATLVVEPRLGATVS--SAENDAVSALISLGYKPQEASRAV 180

Query: 182 VSVLKKEKNIADDSQIIRLALRAIS 206
            +V +   +      +IR ALR ++
Sbjct: 181 AAVKE---DGLSSEDLIRRALRGMA 202


>gi|330721244|gb|EGG99343.1| Holliday junction DNA helicase RuvA [gamma proteobacterium
           IMCC2047]
          Length = 197

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 9/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+IKG +       + +DVQGV Y +  P+ T   L  +    +L+    +R+D   L
Sbjct: 1   MIGRIKGVLIEKSPPDICVDVQGVGYELQVPMNTFYRLPDVDHPVSLYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  +  + GVG ++ + +LS I A++ V  +   +   + ++PGI  K 
Sbjct: 61  YGFYEARERELFRAVIKINGVGPKLGLAILSGIEASDFVRVVHNNDVAALTKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ K            + +N   A           A+SAL+ LGY    A  A
Sbjct: 121 AERLVIEMRDKLKDWPEAPGDLQASLNSAAADGT------DEAVSALLALGYKPKDAEKA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + S+           ++IR AL++++
Sbjct: 175 IKSIA---VEGMSSQELIRQALKSMA 197


>gi|37199217|dbj|BAC95049.1| holliday junction resolvasome, DNA-binding subunit [Vibrio
           vulnificus YJ016]
          Length = 206

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 101/205 (49%), Gaps = 4/205 (1%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           IG+++G +       +LI+V G+ Y +  P+     L  IG+   ++    +R+D   L+
Sbjct: 4   IGRLRGILLEKQPPELLIEVNGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLLY 63

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF +  +R  F  +    GVG ++ + +LS +TA++ V S+  ++   + ++PG+  K A
Sbjct: 64  GFNTVKERALFREVIKANGVGPKLGLAILSGMTASQFVASVEREDISTLVKLPGVGKKTA 123

Query: 122 SRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
            R++ E+K +     +  +    +      +   S  S    A+SAL+ LGY   QA+  
Sbjct: 124 ERLVVEMKDRLKGWSAGDLFTPFTDAAPVDSGSTSSNSAEEEAVSALLALGYKPVQASKV 183

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  + K         Q+IR AL+++
Sbjct: 184 VSQIAK---PDMTSEQLIREALKSM 205


>gi|152970923|ref|YP_001336032.1| Holliday junction DNA helicase RuvA [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|206580323|ref|YP_002237747.1| Holliday junction DNA helicase RuvA [Klebsiella pneumoniae 342]
 gi|238895438|ref|YP_002920173.1| Holliday junction DNA helicase RuvA [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262041978|ref|ZP_06015160.1| Holliday junction DNA helicase RuvA [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288934605|ref|YP_003438664.1| Holliday junction DNA helicase RuvA [Klebsiella variicola At-22]
 gi|290508806|ref|ZP_06548177.1| Holliday junction DNA helicase RuvA [Klebsiella sp. 1_1_55]
 gi|330001163|ref|ZP_08303909.1| Holliday junction DNA helicase RuvA [Klebsiella sp. MS 92-3]
 gi|166230560|sp|A6TB31|RUVA_KLEP7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226698734|sp|B5XQ04|RUVA_KLEP3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|150955772|gb|ABR77802.1| Holliday junction DNA helicase motor protein [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|206569381|gb|ACI11157.1| Holliday junction DNA helicase RuvA [Klebsiella pneumoniae 342]
 gi|238547755|dbj|BAH64106.1| Holliday junction DNA helicase motor protein [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
 gi|259040676|gb|EEW41765.1| Holliday junction DNA helicase RuvA [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288889314|gb|ADC57632.1| Holliday junction DNA helicase RuvA [Klebsiella variicola At-22]
 gi|289778200|gb|EFD86197.1| Holliday junction DNA helicase RuvA [Klebsiella sp. 1_1_55]
 gi|328537774|gb|EGF63974.1| Holliday junction DNA helicase RuvA [Klebsiella sp. MS 92-3]
          Length = 203

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 55/204 (26%), Positives = 99/204 (48%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLETAGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVASLVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPAGPTADDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + +     A+   +IR ALRA
Sbjct: 181 VSKIAR---PDANSETLIREALRA 201


>gi|262404190|ref|ZP_06080745.1| holliday junction DNA helicase RuvA [Vibrio sp. RC586]
 gi|262349222|gb|EEY98360.1| holliday junction DNA helicase RuvA [Vibrio sp. RC586]
          Length = 204

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 51/206 (24%), Positives = 101/206 (49%), Gaps = 4/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI++ G+ Y +  P+  +  L  IG+   ++    +R+D   L
Sbjct: 1   MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ + +LS +TA + V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVSERALFREVIKANGVGPKMGLAILSGMTANQFVSCVEKEDISTLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +     +  +    +      +      +    AISAL+ LGY   QA+ 
Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPATDAAPIDSVPALAQNAQDEAISALLALGYKPPQASK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
           AV  + K         ++IR AL+++
Sbjct: 181 AVSQIAKA---GMSCEELIREALKSM 203


>gi|332993889|gb|AEF03944.1| Holliday junction DNA helicase motor protein [Alteromonas sp. SN2]
          Length = 206

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 99/207 (47%), Gaps = 6/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +       +L+D  GV Y I+ P+ +   L  +G+   ++    +R+D   L
Sbjct: 1   MIGRIRGTLAEKQPPEILVDANGVGYEIHMPMTSFYQLPAVGEEVVVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF   ++R  F  L    GVG ++ + +LS ++A + + ++   +   +  +PGI  K 
Sbjct: 61  FGFADKMERGLFRELIKANGVGPKLGLTILSGMSAGQFLSAVQNADVSALVSLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLS---SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A R++ ELK +        S+     S        +  +     +A SALV LGY   QA
Sbjct: 121 AERLVVELKDRLAKFGKVQSIAIPPPSGDLLNTNTLVEVNDTREDAQSALVALGYKPAQA 180

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRA 204
           +  + SV K+         +IR AL+A
Sbjct: 181 SKLIDSVYKEGMES---ESLIREALKA 204


>gi|88861319|ref|ZP_01135950.1| Holliday junction DNA helicase motor protein [Pseudoalteromonas
           tunicata D2]
 gi|88816698|gb|EAR26522.1| Holliday junction DNA helicase motor protein [Pseudoalteromonas
           tunicata D2]
          Length = 205

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 60/207 (28%), Positives = 102/207 (49%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L+DV GV Y ++ P+     L K G+  TL+    +R+D   L
Sbjct: 1   MIGRLSGILIEKQPPQILLDVAGVGYEVHLPMTCFYHLPKEGEKTTLYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  L    GVG ++ + +LS ++A + V+ +  +++  + ++PG+  K 
Sbjct: 61  FGFNHKAERALFRELLKANGVGPKLGLAILSGMSADQFVQCVQHEDATSLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSC--VNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +       +    S   V + Q       S   +AI+ALV LGY Q QA 
Sbjct: 121 AERLVLEMKDRLKDWGRDLFNPSSNELVLEMQNGPNVHDSAEDDAIAALVALGYKQAQAE 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
             V S+            +IR AL+++
Sbjct: 181 KTVKSLRA---PGKTSEVLIREALKSM 204


>gi|149366014|ref|ZP_01888049.1| Holliday junction DNA helicase [Yersinia pestis CA88-4125]
 gi|153949523|ref|YP_001401004.1| Holliday junction DNA helicase RuvA [Yersinia pseudotuberculosis IP
           31758]
 gi|161484795|ref|NP_669562.2| Holliday junction DNA helicase RuvA [Yersinia pestis KIM 10]
 gi|161511391|ref|NP_993241.2| Holliday junction DNA helicase RuvA [Yersinia pestis biovar
           Microtus str. 91001]
 gi|161760577|ref|YP_070557.2| Holliday junction DNA helicase RuvA [Yersinia pseudotuberculosis IP
           32953]
 gi|162420589|ref|YP_001606843.1| Holliday junction DNA helicase RuvA [Yersinia pestis Angola]
 gi|165928362|ref|ZP_02224194.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938889|ref|ZP_02227443.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166009183|ref|ZP_02230081.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166210491|ref|ZP_02236526.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167401440|ref|ZP_02306937.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167420007|ref|ZP_02311760.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167424505|ref|ZP_02316258.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167470862|ref|ZP_02335566.1| Holliday junction DNA helicase motor protein [Yersinia pestis FV-1]
 gi|170024378|ref|YP_001720883.1| Holliday junction DNA helicase RuvA [Yersinia pseudotuberculosis
           YPIII]
 gi|186895407|ref|YP_001872519.1| Holliday junction DNA helicase RuvA [Yersinia pseudotuberculosis
           PB1/+]
 gi|218929164|ref|YP_002347039.1| Holliday junction DNA helicase RuvA [Yersinia pestis CO92]
 gi|229894771|ref|ZP_04509951.1| component of RuvABC resolvasome, regulatory subunit [Yersinia
           pestis Pestoides A]
 gi|229897474|ref|ZP_04512630.1| component of RuvABC resolvasome, regulatory subunit [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229898120|ref|ZP_04513269.1| component of RuvABC resolvasome, regulatory subunit [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229901979|ref|ZP_04517100.1| component of RuvABC resolvasome, regulatory subunit [Yersinia
           pestis Nepal516]
 gi|270490837|ref|ZP_06207911.1| Holliday junction DNA helicase RuvA [Yersinia pestis KIM D27]
 gi|294503877|ref|YP_003567939.1| Holliday junction DNA helicase motor protein [Yersinia pestis
           Z176003]
 gi|20455249|sp|Q8ZEU6|RUVA_YERPE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|90146256|sp|Q66AU0|RUVA_YERPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|167012664|sp|A7FIC6|RUVA_YERP3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560143|sp|B2K323|RUVA_YERPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560144|sp|A9QYX3|RUVA_YERPG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560145|sp|B1JLL1|RUVA_YERPY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|115347775|emb|CAL20692.1| Holliday junction DNA helicase [Yersinia pestis CO92]
 gi|149292427|gb|EDM42501.1| Holliday junction DNA helicase [Yersinia pestis CA88-4125]
 gi|152961018|gb|ABS48479.1| Holliday junction DNA helicase RuvA [Yersinia pseudotuberculosis IP
           31758]
 gi|162353404|gb|ABX87352.1| Holliday junction DNA helicase RuvA [Yersinia pestis Angola]
 gi|165913252|gb|EDR31875.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165919645|gb|EDR36978.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165991738|gb|EDR44039.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166207671|gb|EDR52151.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166961702|gb|EDR57723.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167049136|gb|EDR60544.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167056387|gb|EDR66156.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169750912|gb|ACA68430.1| Holliday junction DNA helicase RuvA [Yersinia pseudotuberculosis
           YPIII]
 gi|186698433|gb|ACC89062.1| Holliday junction DNA helicase RuvA [Yersinia pseudotuberculosis
           PB1/+]
 gi|229680875|gb|EEO76970.1| component of RuvABC resolvasome, regulatory subunit [Yersinia
           pestis Nepal516]
 gi|229688836|gb|EEO80903.1| component of RuvABC resolvasome, regulatory subunit [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229693811|gb|EEO83860.1| component of RuvABC resolvasome, regulatory subunit [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229702244|gb|EEO90263.1| component of RuvABC resolvasome, regulatory subunit [Yersinia
           pestis Pestoides A]
 gi|262362004|gb|ACY58725.1| Holliday junction DNA helicase motor protein [Yersinia pestis
           D106004]
 gi|262365859|gb|ACY62416.1| Holliday junction DNA helicase motor protein [Yersinia pestis
           D182038]
 gi|270339341|gb|EFA50118.1| Holliday junction DNA helicase RuvA [Yersinia pestis KIM D27]
 gi|294354336|gb|ADE64677.1| Holliday junction DNA helicase motor protein [Yersinia pestis
           Z176003]
 gi|320015265|gb|ADV98836.1| component of RuvABC resolvasome, regulatory subunit [Yersinia
           pestis biovar Medievalis str. Harbin 35]
          Length = 204

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y +  P+     L ++G    +F +  +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLETNGVGYEVQLPMTCFYELPELGQEAIIFTQFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V GVG ++A+ +LS ++A + V ++  ++   + ++PG+  K 
Sbjct: 61  YGFNNKQERALFRELIKVNGVGPKLALAILSGMSAQQFVGAVEREDITTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN-KEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +   L+  +  +   ++    +   S       A SALV LGY   +A+ 
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNTGDISLPTASPQTSDADIEAEAASALVALGYKPQEASR 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  + K     AD   +IR ALRA
Sbjct: 181 LVSKIAK---PGADCETLIRDALRA 202


>gi|332534227|ref|ZP_08410072.1| holliday junction DNA helicase RuvA [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036307|gb|EGI72778.1| holliday junction DNA helicase RuvA [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 205

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 57/207 (27%), Positives = 105/207 (50%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L++V GV Y +  P+     L KIG+   ++    +R+D   L
Sbjct: 1   MIGRLNGILVEKQPPEILLEVSGVGYEVQMPMTCFYDLPKIGENAIVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++R  F  L    GVG ++ + +LS ++A + V  +  ++S  + ++PG+  K 
Sbjct: 61  FGFNNKVERALFRELLKANGVGPKLGLAILSGMSAKQFVSCVNNEDSTSLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDM--SCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +     + +      S V +  +      + A +A+SAL+ LGY   QA 
Sbjct: 121 AERLVLEMKDRLKDWGNDLFTPFSDSAVIEPMSDATIANNAADDAVSALLALGYKLPQAQ 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            AV S+ K          +IR +L+++
Sbjct: 181 KAVKSISK---PDMSTEVLIRESLKSM 204


>gi|62180473|ref|YP_216890.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161613551|ref|YP_001587516.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|224583600|ref|YP_002637398.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|75482773|sp|Q57NA2|RUVA_SALCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189045767|sp|A9MUX3|RUVA_SALPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254767385|sp|C0Q2F4|RUVA_SALPC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|62128106|gb|AAX65809.1| Holliday junction helicase subunit A [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161362915|gb|ABX66683.1| hypothetical protein SPAB_01271 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|224468127|gb|ACN45957.1| Holliday junction DNA helicase motor protein [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|322714948|gb|EFZ06519.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 203

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 55/204 (26%), Positives = 97/204 (47%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREELGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +      +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAVDLVLTSPASPTSEDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + +     A    +IR ALRA
Sbjct: 181 VNKIAR---PDASSETLIRDALRA 201


>gi|300717084|ref|YP_003741887.1| Holliday junction ATP-dependent DNA helicase [Erwinia billingiae
           Eb661]
 gi|299062920|emb|CAX60040.1| Holliday junction ATP-dependent DNA helicase [Erwinia billingiae
           Eb661]
          Length = 205

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 100/206 (48%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L ++     LF    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLEANGVGYEVHMPMTCFYELPELNQEAILFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PG+  K 
Sbjct: 61  FGFNSKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVEREEIAALVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSV--VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   +            +  E     +       A++ALV+LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGMHGDLFAADAPFALTSEVQPADAANDAEGEAVAALVSLGYKPQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             +  + +     AD   +IR ALRA
Sbjct: 181 RMISKLGR---PDADCETLIREALRA 203


>gi|269138790|ref|YP_003295491.1| holliday junction resolvasome, DNA-binding subunit [Edwardsiella
           tarda EIB202]
 gi|267984451|gb|ACY84280.1| holliday junction resolvasome, DNA-binding subunit [Edwardsiella
           tarda EIB202]
 gi|304558782|gb|ADM41446.1| Holliday junction DNA helicase RuvA [Edwardsiella tarda FL6-60]
          Length = 202

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 4/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       V+++  GV Y +  P+     L ++G    +F    +R+D   L
Sbjct: 1   MIGRLRGTILEKQPPQVVLETHGVGYEVQMPMTCFYELPQVGSEAVIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PG+  K 
Sbjct: 61  YGFNNKQERALFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREEVAALVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   LS  +      +        +       A++AL+ LGY   +A+  
Sbjct: 121 AERLVVEMKDRFKGLSGDLFTPTDDL-PPSTQPQAQADAEGEAVAALIALGYKPQEASRL 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  V       AD   +IR ALRA
Sbjct: 180 VNRVTVA---GADSETLIRDALRA 200


>gi|120554625|ref|YP_958976.1| Holliday junction DNA helicase RuvA [Marinobacter aquaeolei VT8]
 gi|166230564|sp|A1U1C0|RUVA_MARAV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|120324474|gb|ABM18789.1| Holliday junction DNA helicase subunit RuvA [Marinobacter aquaeolei
           VT8]
          Length = 209

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 60/208 (28%), Positives = 99/208 (47%), Gaps = 6/208 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +        L++  G+ Y I  P  T   L + G   TL     +R+D   L
Sbjct: 1   MIGRIRGMLIEKSPGQALVECSGLGYEIDIPYTTFFHLPETGQEVTLHTHFAVREDAQSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S LDR  F LL  V GVG ++A+G+LS + A + +  +  +++  + ++PG+  K 
Sbjct: 61  YGFASRLDRNLFRLLIKVNGVGPKLAVGILSGLDAQQFIRCVEARDANSLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSS---VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A R++ E+  +   L       Q D+           + P     A +AL+ LGY   +A
Sbjct: 121 AERLLIEMADRIGQLEGQFVPSQPDVPTGAGAATASQAGPDPREEAEAALIALGYKPQEA 180

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
             A+  V        +   +IRLAL+ +
Sbjct: 181 AKAISKVA---GPDMNSETLIRLALKNM 205


>gi|16760845|ref|NP_456462.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16765237|ref|NP_460852.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|29141463|ref|NP_804805.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56413186|ref|YP_150261.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|167994196|ref|ZP_02575288.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168234044|ref|ZP_02659102.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168241523|ref|ZP_02666455.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168259832|ref|ZP_02681805.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168462574|ref|ZP_02696505.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168820718|ref|ZP_02832718.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194446097|ref|YP_002041160.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194451798|ref|YP_002045948.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194471309|ref|ZP_03077293.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197247981|ref|YP_002146128.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197263523|ref|ZP_03163597.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197362112|ref|YP_002141749.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|198242475|ref|YP_002215191.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200389612|ref|ZP_03216223.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205352399|ref|YP_002226200.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207856584|ref|YP_002243235.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|213426405|ref|ZP_03359155.1| Holliday junction DNA helicase motor protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213580455|ref|ZP_03362281.1| Holliday junction DNA helicase motor protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213609154|ref|ZP_03368980.1| Holliday junction DNA helicase motor protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213859991|ref|ZP_03385695.1| Holliday junction DNA helicase motor protein [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|238912045|ref|ZP_04655882.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|289824023|ref|ZP_06543621.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|54039573|sp|P66747|RUVA_SALTI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|54042202|sp|P66746|RUVA_SALTY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|81361945|sp|Q5PN01|RUVA_SALPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226698738|sp|B5F3J6|RUVA_SALA4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226698739|sp|B5FSN7|RUVA_SALDC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226698740|sp|B5R1V8|RUVA_SALEP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226698741|sp|B5R8E2|RUVA_SALG2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560123|sp|B4T7Z3|RUVA_SALHS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560124|sp|B4SVE5|RUVA_SALNS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560125|sp|B5BH60|RUVA_SALPK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|25299990|pir||AC0743 Holliday junction DNA helicase [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16420431|gb|AAL20811.1| Holliday junction helicase subunit A [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16503142|emb|CAD05646.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137090|gb|AAO68654.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56127443|gb|AAV76949.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|194404760|gb|ACF64982.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194410102|gb|ACF70321.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194457673|gb|EDX46512.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|195634327|gb|EDX52679.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197093589|emb|CAR59052.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197211684|gb|ACH49081.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197241778|gb|EDY24398.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197936991|gb|ACH74324.1| holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199602057|gb|EDZ00603.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205272180|emb|CAR37038.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205327892|gb|EDZ14656.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205331994|gb|EDZ18758.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205339435|gb|EDZ26199.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205342743|gb|EDZ29507.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205350710|gb|EDZ37341.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206708387|emb|CAR32691.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|261247066|emb|CBG24885.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267993877|gb|ACY88762.1| Holliday junction DNA helicase motor protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301158416|emb|CBW17923.1| Holliday junction DNA helicase ruvA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312912889|dbj|BAJ36863.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320085488|emb|CBY95269.1| Holliday junction ATP-dependent DNA helicase ruvA [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|321224538|gb|EFX49601.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323130179|gb|ADX17609.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|326627451|gb|EGE33794.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332988789|gb|AEF07772.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 203

 Score =  182 bits (462), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 55/204 (26%), Positives = 97/204 (47%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREELGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +      +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAVDLVLTSPASPTSEDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + +     A    +IR ALRA
Sbjct: 181 VSKIAR---PDASSETLIRDALRA 201


>gi|168238525|ref|ZP_02663583.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194736016|ref|YP_002114930.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|204930984|ref|ZP_03221810.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|229560126|sp|B4TYR8|RUVA_SALSV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|194711518|gb|ACF90739.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197288628|gb|EDY28003.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|204320028|gb|EDZ05233.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|322616895|gb|EFY13803.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322618133|gb|EFY15025.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625804|gb|EFY22623.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322626256|gb|EFY23066.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632670|gb|EFY29415.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322639014|gb|EFY35707.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640454|gb|EFY37107.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644219|gb|EFY40764.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649542|gb|EFY45974.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655449|gb|EFY51757.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660228|gb|EFY56466.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322662909|gb|EFY59116.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668094|gb|EFY64253.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674146|gb|EFY70240.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322675500|gb|EFY71574.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322683086|gb|EFY79102.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686780|gb|EFY82758.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323195329|gb|EFZ80509.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199221|gb|EFZ84316.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323204054|gb|EFZ89069.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323207477|gb|EFZ92425.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210663|gb|EFZ95541.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217461|gb|EGA02180.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221952|gb|EGA06342.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323224438|gb|EGA08726.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323231483|gb|EGA15596.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323235925|gb|EGA20004.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240495|gb|EGA24538.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323245387|gb|EGA29387.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247807|gb|EGA31745.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323253606|gb|EGA37434.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323255035|gb|EGA38823.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323260268|gb|EGA43889.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323266859|gb|EGA50345.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269065|gb|EGA52521.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 203

 Score =  182 bits (462), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 55/204 (26%), Positives = 96/204 (47%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREELGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +      +                A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAVDLVLTSPASPGSEDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + +     A    +IR ALRA
Sbjct: 181 VSKIAR---PDASSETLIRDALRA 201


>gi|237809451|ref|YP_002893891.1| Holliday junction DNA helicase RuvA [Tolumonas auensis DSM 9187]
 gi|259495658|sp|C4LBN1|RUVA_TOLAT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|237501712|gb|ACQ94305.1| Holliday junction DNA helicase RuvA [Tolumonas auensis DSM 9187]
          Length = 206

 Score =  182 bits (461), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 54/208 (25%), Positives = 98/208 (47%), Gaps = 6/208 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G I       +L+DV GV Y +  P+     L  +G   T+     +R+D   L
Sbjct: 1   MIGRLHGIIIEKSPPEILLDVGGVGYELQLPMTCFYELPAVGQEATIITHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ ++S ++A + V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTRQERTLFRELLKANGVGPKLALAIMSGMSANQFVSCVEREDVSSLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL---SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A R++ E+K +               +     +  +    +    A++AL+ LGY   QA
Sbjct: 121 AERLIVEMKDRLKGWISHDLFTPYTDAAPVDHEPSLAPADTVESEAVAALLALGYKPQQA 180

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
           +  V  V+K E        +IR ALR++
Sbjct: 181 SLVVSKVIKPE---MTVENVIREALRSM 205


>gi|167552471|ref|ZP_02346224.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205322886|gb|EDZ10725.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 203

 Score =  182 bits (461), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 98/204 (48%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G I       VL++  GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRIRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREELGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L+  +      +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGLNGDLFTPAVDLVLTSPASPTSEDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + +     A    +IR ALRA
Sbjct: 181 VSKIAR---PDASSETLIRDALRA 201


>gi|89075787|ref|ZP_01162175.1| Holliday junction DNA helicase motor protein [Photobacterium sp.
           SKA34]
 gi|89048519|gb|EAR54094.1| Holliday junction DNA helicase motor protein [Photobacterium sp.
           SKA34]
          Length = 207

 Score =  181 bits (460), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 59/209 (28%), Positives = 99/209 (47%), Gaps = 7/209 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VL++V G+ Y +  P+     L +IG    +F    +R+D   L
Sbjct: 1   MIGRLRGIVIEKQPPEVLLEVGGIGYEVQMPMSCFYELPQIGQEAIIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  +    GVG ++ + +LS +TA++ V S+ L++   + +IPG+  K 
Sbjct: 61  YGFNKKSERELFREVIKANGVGPKLGLAILSAMTASQFVRSVELEDVTTLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSS----VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ E+K +              D +  N       +       A+SALV LGY    
Sbjct: 121 AERLVVEMKDRLKGWGEGDLFTPTLDTAASNAPIQDPSNQARAEDEAVSALVALGYKPQI 180

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A   V  V + E        IIR ALR++
Sbjct: 181 AAKVVSQVTQPE---MSSEAIIRDALRSM 206


>gi|90580117|ref|ZP_01235925.1| Holliday junction DNA helicase motor protein [Vibrio angustum S14]
 gi|90439002|gb|EAS64185.1| Holliday junction DNA helicase motor protein [Vibrio angustum S14]
          Length = 207

 Score =  181 bits (460), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 59/209 (28%), Positives = 99/209 (47%), Gaps = 7/209 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VL++V G+ Y +  P+     L +IG    +F    +R+D   L
Sbjct: 1   MIGRLRGIVIEKQPPEVLLEVGGIGYEVQMPMSCFYELPQIGQEAIIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  +    GVG ++ + +LS +TA++ V S+ L++   + +IPG+  K 
Sbjct: 61  YGFNKKSERELFREVIKANGVGPKLGLAILSAMTASQFVRSVELEDVTTLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSS----VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ E+K +              D +  N       +       A+SALV LGY    
Sbjct: 121 AERLVVEMKDRLKGWGEGDLFTPALDTAASNAPIQDPSNQARAEDEAVSALVALGYKPQI 180

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A   V  V + E        IIR ALR++
Sbjct: 181 AAKVVSQVTQPE---MSSEAIIRDALRSM 206


>gi|213649641|ref|ZP_03379694.1| Holliday junction DNA helicase motor protein [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
          Length = 203

 Score =  181 bits (460), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 54/204 (26%), Positives = 96/204 (47%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREELGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +       +      +        +       A++ALV LGY   +A+  
Sbjct: 121 AERLIVEMKDRFKGPHGDLFTPAVDLVLTSPASPTSEDAEQEAVAALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + +     A    +IR ALRA
Sbjct: 181 VSKIAR---PDASSETLIRDALRA 201


>gi|197335439|ref|YP_002155714.1| holliday junction DNA helicase RuvA [Vibrio fischeri MJ11]
 gi|226698745|sp|B5FCQ1|RUVA_VIBFM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|197316929|gb|ACH66376.1| holliday junction DNA helicase RuvA [Vibrio fischeri MJ11]
          Length = 207

 Score =  181 bits (460), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 55/209 (26%), Positives = 104/209 (49%), Gaps = 7/209 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++GN+       +LI+V G+ Y +  P+     L ++G    ++    +R+D   L
Sbjct: 1   MIGRLRGNLLEKQPPELLIEVSGIGYEVQMPMSCFYELPEVGSEAIIYTHYVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ + +LS +TA + V+S+  ++   + ++PG+  K 
Sbjct: 61  YGFNTKNERALFREVIKANGVGPKLGLAILSGMTAAQFVQSVEREDISTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSS----VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ E+K +     +        D + ++     I S  S    A+SAL+ LGY   Q
Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPATDAAPMDDGSEFITSPQSAVDEAVSALIALGYKPQQ 180

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A+  V  V K          +IR +L+++
Sbjct: 181 ASKTVSQVAK---PDMTSEVLIRESLKSM 206


>gi|260779157|ref|ZP_05888049.1| holliday junction DNA helicase RuvA [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605321|gb|EEX31616.1| holliday junction DNA helicase RuvA [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 224

 Score =  181 bits (460), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 99/206 (48%), Gaps = 5/206 (2%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           IG+++G +       +LI+V G+ Y +  P+     L  IG+   ++    +R+D   L+
Sbjct: 21  IGRLRGILLEKQPPELLIEVNGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLLY 80

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF +  +R  F  +    GVG ++ +G+LS +TA++ V  +  ++   + ++PG+  K A
Sbjct: 81  GFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDISTLVKLPGVGKKTA 140

Query: 122 SRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            R++ E+K +        +          + A      +    AISAL+ LGY   QA+ 
Sbjct: 141 ERLVVEMKDRLKGWGAGDLFTPHTDAAPVDSAPQVDQANAEEEAISALLALGYKPTQASK 200

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            V  V   +       ++IR AL+++
Sbjct: 201 VVSQVKTAD---MSSEELIREALKSM 223


>gi|254292161|ref|ZP_04962932.1| Holliday junction DNA helicase RuvA [Vibrio cholerae AM-19226]
 gi|150421924|gb|EDN13900.1| Holliday junction DNA helicase RuvA [Vibrio cholerae AM-19226]
          Length = 204

 Score =  181 bits (460), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 50/206 (24%), Positives = 101/206 (49%), Gaps = 4/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI++ G+ Y +  P+  +  L  IG+   ++    +R+D   L
Sbjct: 1   MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ + +LS +TA + V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVNERALFREVIKANGVGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSV-VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +     +  +    +      +      +    A+SAL+ LGY   QA+ 
Sbjct: 121 AERLVVEMKDRLKGWGAADLFTPATDAAPVDSTPVIAQNAQEEAMSALLALGYKPPQASK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
           A+  V K         ++IR AL+++
Sbjct: 181 ALSQVAKA---GMSSEELIREALKSM 203


>gi|330445532|ref|ZP_08309184.1| Holliday junction DNA helicase RuvA [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328489723|dbj|GAA03681.1| Holliday junction DNA helicase RuvA [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 207

 Score =  181 bits (459), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 58/209 (27%), Positives = 99/209 (47%), Gaps = 7/209 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VL++V G+ Y +  P+     L +IG    +F    +R+D   L
Sbjct: 1   MIGRLRGIVIEKQPPEVLLEVGGIGYEVQMPMSCFYELPEIGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  +    GVG ++ + +LS +TA++ V S+ L++   + +IPG+  K 
Sbjct: 61  YGFNKKSERELFREVIKANGVGPKLGLAILSAMTASQFVRSVELEDVTTLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSS----VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ E+K +              D +  N       +       A+SAL+ LGY    
Sbjct: 121 AERLVVEMKDRLKGWGEGDLFTPALDTAASNAPIQDPANQARAEDEAVSALIALGYKPQI 180

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A   V  V + E        IIR ALR++
Sbjct: 181 AAKVVSQVTQPE---MSSEAIIRDALRSM 206


>gi|238756969|ref|ZP_04618157.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia aldovae
           ATCC 35236]
 gi|238704799|gb|EEP97328.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia aldovae
           ATCC 35236]
          Length = 205

 Score =  181 bits (459), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 102/206 (49%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y +  P+     L  +G    +F +  +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLETNGVGYEVQLPMTCFYELPNVGQEAIIFTQFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V ++  ++   + ++PG+  K 
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC--SMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   L+  +  +   +    ++    S       A SALV LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNTGDIQLPASNSSQISDADIEAEAASALVALGYKPQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             V  + K     AD   +IR ALR+
Sbjct: 181 RLVSKIAK---PGADCETLIRDALRS 203


>gi|59711558|ref|YP_204334.1| Holliday junction DNA helicase motor protein [Vibrio fischeri
           ES114]
 gi|71649480|sp|Q5E6A0|RUVA_VIBF1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|59479659|gb|AAW85446.1| component of RuvABC resolvasome, regulatory subunit [Vibrio
           fischeri ES114]
          Length = 207

 Score =  181 bits (459), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 54/209 (25%), Positives = 104/209 (49%), Gaps = 7/209 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++GN+       +LI+V G+ Y +  P+     L ++G    ++    +R+D   L
Sbjct: 1   MIGRLRGNLLEKQPPELLIEVSGIGYEVQMPMSCFYELPEVGSEAIIYTHYVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ + +LS +TA + V+S+  ++   + ++PG+  K 
Sbjct: 61  YGFNTKNERALFREVIKANGVGPKLGLAILSGMTAAQFVQSVEREDISTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSS----VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ E+K +     +        D + ++     I S  S    A+SAL+ LGY   Q
Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPATDAAPMDDGSEFITSPQSAVDEAVSALIALGYKPQQ 180

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A+  V  + K          +IR +L+++
Sbjct: 181 ASKTVSQIAK---PDMTSEVLIRESLKSM 206


>gi|308049716|ref|YP_003913282.1| Holliday junction DNA helicase subunit RuvA [Ferrimonas balearica
           DSM 9799]
 gi|307631906|gb|ADN76208.1| Holliday junction DNA helicase subunit RuvA [Ferrimonas balearica
           DSM 9799]
          Length = 207

 Score =  181 bits (459), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 57/209 (27%), Positives = 106/209 (50%), Gaps = 7/209 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       V+++  GV Y +  P+ +   L ++G    +F    +R+D   L
Sbjct: 1   MIGRLRGLLVEKAAPEVVLECGGVGYEVQLPMTSFYQLPELGSEAVIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L    GVG ++A+G+LS ++A + V+++  +N   + ++PG+  K 
Sbjct: 61  YGFASKEERALFRELIKTNGVGPKMALGILSGMSAEQFVDAVQAENITGLTKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQD----MSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ E++ +  +    +       ++  N  +  + S P    +AI+ALV LGY    
Sbjct: 121 AERLVVEMRDRLKNFGGPLLTPYADRLAGTNPTENTLVSAPDPEEDAIAALVALGYKAPA 180

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A+  V  V           Q+IR AL+A+
Sbjct: 181 ASKVVAKVAA---PGMSSEQLIRDALKAM 206


>gi|256823080|ref|YP_003147043.1| Holliday junction DNA helicase RuvA [Kangiella koreensis DSM 16069]
 gi|256796619|gb|ACV27275.1| Holliday junction DNA helicase RuvA [Kangiella koreensis DSM 16069]
          Length = 205

 Score =  181 bits (458), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 60/207 (28%), Positives = 101/207 (48%), Gaps = 4/207 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG+I+G +      +V+I+   GV Y I  P+ T   L + G+   L     + ++   
Sbjct: 1   MIGRIRGTLIEKIPPFVIIETTAGVGYEIQVPMTTFYQLPEEGEQAILSTHMSIAENLHA 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF+S  DR  F  L  V GVG ++A+ +LS +   E V ++   N   + ++PG+  K
Sbjct: 61  LYGFISTKDRALFRELIKVNGVGPKLALAILSGMETDEFVMTVHDGNVDRLVKLPGVGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ E+  +    S       S  ++      +    +  A+SAL+ LGY    A+ 
Sbjct: 121 TAERLLVEMSDRLKDWSISAGLPSSQPSEASIAQTAKTDASQEAVSALIALGYKPQIASK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV  V     + A   ++IRLALR ++
Sbjct: 181 AVTQVAH---DDAKSEELIRLALRQLA 204


>gi|229470526|sp|B4RTT9|RUVA_ALTMD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
          Length = 206

 Score =  181 bits (458), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 61/207 (29%), Positives = 100/207 (48%), Gaps = 6/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +       +L+DV GV Y I+ P+ +   L  +G+   ++    +R+D   L
Sbjct: 1   MIGRIRGTLAEKQPPEILVDVAGVGYEIHMPMTSFYQLPAVGEEVVVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF   ++R  F  L    GVG ++ + +LS ++A + + S+  ++   +A +PGI  K 
Sbjct: 61  FGFADKMERGLFRELIKANGVGPKLGLAILSGMSAGQFLASVQNEDVSALASLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLS---SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A R++ ELK +        S+     S        I  +      A SAL+ LGY   QA
Sbjct: 121 AERLVVELKDRLAKFGKAQSIAVPPPSGDLLSPNTIVEVNDAREEAQSALIALGYKPAQA 180

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRA 204
           +  V SV  +         +IR AL+A
Sbjct: 181 SKLVESVYSEGMES---EALIREALKA 204


>gi|238754860|ref|ZP_04616210.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia ruckeri
           ATCC 29473]
 gi|238706871|gb|EEP99238.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia ruckeri
           ATCC 29473]
          Length = 204

 Score =  181 bits (458), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G I       VL++  GV Y I  P+     L +IG    +F +  +R+D   L
Sbjct: 1   MIGRIRGIILEKQPPLVLLETNGVGYEIQLPMTCFYELPEIGQEAIIFTQFIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PG+  K 
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAVEREEITTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN-KEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +   L+  +  + S +     +   S       A+SALV+LGY   +A+ 
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNTSDIPLPTTSAQVSAADAEAEAVSALVSLGYKPQEASR 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  + K      D   +IR ALR+
Sbjct: 181 LVSKIAK---PGTDCETLIRDALRS 202


>gi|209695355|ref|YP_002263284.1| Holliday junction DNA helicase RuvA [Aliivibrio salmonicida
           LFI1238]
 gi|226698724|sp|B6EGJ3|RUVA_ALISL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|208009307|emb|CAQ79573.1| holliday junction ATP-dependent DNA helicase RuvA [Aliivibrio
           salmonicida LFI1238]
          Length = 206

 Score =  181 bits (458), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 106/208 (50%), Gaps = 6/208 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++GN+       +LI+V G+ Y +  P+     L  IG    +++   +R+D   L
Sbjct: 1   MIGRLRGNLLEKQPPELLIEVSGIGYEVQMPMSCFYELPPIGTEAIIYIHYVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ + +LS +TA++ V+S+  ++   + ++PG+  K 
Sbjct: 61  YGFNTKKERALFREVIKANGVGPKLGLAILSGMTASQFVQSVEREDISTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSS---VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A R++ E+K +     +       D + ++     I S  S    A+SAL++LGY   QA
Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPADTTSMDDASDLISSPQSAQDEAVSALISLGYKPVQA 180

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
           +  V  V K          +IR +L+++
Sbjct: 181 SKMVSQVAK---PDMTSESLIRESLKSM 205


>gi|123442635|ref|YP_001006612.1| Holliday junction DNA helicase RuvA [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|166231457|sp|A1JRJ9|RUVA_YERE8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|122089596|emb|CAL12445.1| Holliday junction DNA helicase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 205

 Score =  181 bits (458), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y +  P+     L  IG    +F +  +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLETNGVGYEVQLPMTCFYELPDIGQEAIIFTQFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V ++  ++   + ++PG+  K 
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC--SMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   L+  +  +   +    ++    S       A SALV LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNTGDIQLPASNSSQISDADIEAEAASALVALGYKPQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             V  + K     AD   +IR ALRA
Sbjct: 181 RLVSKIAK---PGADCETLIRDALRA 203


>gi|153839740|ref|ZP_01992407.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus
           AQ3810]
 gi|149746738|gb|EDM57726.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus
           AQ3810]
          Length = 204

 Score =  180 bits (457), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 102/206 (49%), Gaps = 4/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLI++ G+ Y +  P+     L  IG+   ++    +R+D   L
Sbjct: 1   MIGRLRGILLEKQPPEVLIEINGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TA++ V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDVSTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +     +  +    +      +   S  S    A+SAL+ LGY   QA+ 
Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPFTDAAPTDSAAASSNSAEEEAVSALLALGYKPTQASK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            V  + K         Q+IR AL+++
Sbjct: 181 VVSQIAK---PDMSSEQLIREALKSM 203


>gi|90408541|ref|ZP_01216698.1| holliday junction DNA helicase RuvA [Psychromonas sp. CNPT3]
 gi|90310360|gb|EAS38488.1| holliday junction DNA helicase RuvA [Psychromonas sp. CNPT3]
          Length = 207

 Score =  180 bits (457), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 59/209 (28%), Positives = 104/209 (49%), Gaps = 7/209 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VL+DV GV Y I  P+ +   L ++G    ++    +R+D   L
Sbjct: 1   MIGRLRGVLLEKQPPEVLLDVSGVGYEIQLPMSSFYPLPEVGQEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F LL  V GVG ++A+ +LS ++A E V  I  +    + ++PG+  K 
Sbjct: 61  YGFADKHERAMFRLLIKVNGVGPKLALAILSGMSANEFVVCINNEAVSQLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSS----VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ E+K +  +         Q +   +    ++  S+ +    AISAL+ LGY    
Sbjct: 121 AERLVVEMKDRLKNWVGTDLLSPQAESMDMQNGLSNTLSINTAKDEAISALLALGYKPAS 180

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A   + +V +      D   +IR AL+++
Sbjct: 181 AEKCIRNVYQA---GMDCEDLIRSALKSM 206


>gi|238751590|ref|ZP_04613080.1| Holliday junction DNA helicase RuvA [Yersinia rohdei ATCC 43380]
 gi|238710152|gb|EEQ02380.1| Holliday junction DNA helicase RuvA [Yersinia rohdei ATCC 43380]
          Length = 204

 Score =  180 bits (457), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y +  P+     L ++G    +F +  +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLETNGVGYEVQLPMTCFYELPELGQEAIIFTQFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V ++  ++   + ++PG+  K 
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREDITTLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN-KEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +   L+  +  +   +     A   S       A SALV LGY   +A+ 
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNTGDIQLPASAAKTSDADIEAEAASALVALGYKPQEASR 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  + K     AD   +IR ALRA
Sbjct: 181 LVGKIAK---PGADCETLIRDALRA 202


>gi|126174263|ref|YP_001050412.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS155]
 gi|153000824|ref|YP_001366505.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS185]
 gi|160875532|ref|YP_001554848.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS195]
 gi|217973219|ref|YP_002357970.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS223]
 gi|304408864|ref|ZP_07390485.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS183]
 gi|307302867|ref|ZP_07582622.1| Holliday junction DNA helicase RuvA [Shewanella baltica BA175]
 gi|166200260|sp|A3D480|RUVA_SHEB5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166200261|sp|A6WNQ3|RUVA_SHEB8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189045769|sp|A9L3H8|RUVA_SHEB9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254767386|sp|B8EA74|RUVA_SHEB2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|125997468|gb|ABN61543.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS155]
 gi|151365442|gb|ABS08442.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS185]
 gi|160861054|gb|ABX49588.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS195]
 gi|217498354|gb|ACK46547.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS223]
 gi|304352685|gb|EFM17082.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS183]
 gi|306913227|gb|EFN43649.1| Holliday junction DNA helicase RuvA [Shewanella baltica BA175]
 gi|315267720|gb|ADT94573.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS678]
          Length = 205

 Score =  180 bits (457), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 107/207 (51%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LIDV GV Y +  P+ +   L ++     ++    +R+D   L
Sbjct: 1   MIGRLRGVLVEKQAPEILIDVNGVGYELQMPLTSFYELPEVNHETMVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  +R  F LL    GVG ++A+ +LS +TA E V  +   +   + ++PG+  K 
Sbjct: 61  YGFITKQERALFRLLIKTNGVGPKLALTILSGMTAGEFVGCVERDDIVTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQD--MSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E++ K  SL            +    +   ++ S   +AISAL++LGY   QA+
Sbjct: 121 AERLLVEMRDKLKSLMEASAGSEREFVLQSNYSPAPTVNSAEEDAISALISLGYKPPQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            +V +  K+     D   +I+ AL+++
Sbjct: 181 KSVSAAYKE---GMDSETLIKAALKSM 204


>gi|239995979|ref|ZP_04716503.1| Holliday junction DNA helicase motor protein [Alteromonas macleodii
           ATCC 27126]
          Length = 206

 Score =  180 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 60/207 (28%), Positives = 102/207 (49%), Gaps = 6/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +       +L+DV GV Y I+ P+ +   L  +G+   ++    +R+D   L
Sbjct: 1   MIGRIRGTLAEKQPPEILVDVAGVGYEIHMPMTSFYQLPAVGEEVVVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF   ++R  F  L    GVG ++ + +LS ++A++ + S+  ++   +  +PGI  K 
Sbjct: 61  FGFADKMERGLFRELIKANGVGPKLGLAILSGMSASQFLASVQNEDVSALVSLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLS---SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A R++ ELK +        S+     S        I ++      A SAL+ LGY   QA
Sbjct: 121 AERLVVELKDRLAKFGKAQSIAVPPPSGDLLSTNTIVAVNDAREEAQSALIALGYKPAQA 180

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRA 204
           +  V SV K+         +IR +L+A
Sbjct: 181 SKLVDSVYKEGMES---EALIRESLKA 204


>gi|260598336|ref|YP_003210907.1| Holliday junction DNA helicase RuvA [Cronobacter turicensis z3032]
 gi|260217513|emb|CBA31691.1| Holliday junction ATP-dependent DNA helicase ruvA [Cronobacter
           turicensis z3032]
          Length = 203

 Score =  180 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 58/204 (28%), Positives = 101/204 (49%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VL++  GV Y I+ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIVLEKQPPLVLLEAGGVGYEIHMPMTCFYELPETGKEAVVFTHFVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  FGFNNKQERTLFRELIKVNGVGPKLALAILSGMSAQQFVNAVEREEPAALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        ++      A++ALV+LGY   +A+  
Sbjct: 121 AERLVVEMKDRFKGLHGDLFTPAADLVLTSPASPAVDDAEAEAVAALVSLGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  V +     A    +IR ALRA
Sbjct: 181 VSKVAQ---PDASSETLIREALRA 201


>gi|292488538|ref|YP_003531422.1| Holliday junction ATP-dependent DNA helicase ruvA [Erwinia
           amylovora CFBP1430]
 gi|292899714|ref|YP_003539083.1| holliday junction DNA helicase [Erwinia amylovora ATCC 49946]
 gi|291199562|emb|CBJ46679.1| holliday junction DNA helicase [Erwinia amylovora ATCC 49946]
 gi|291553969|emb|CBA21014.1| Holliday junction ATP-dependent DNA helicase ruvA [Erwinia
           amylovora CFBP1430]
 gi|312172681|emb|CBX80937.1| Holliday junction ATP-dependent DNA helicase ruvA [Erwinia
           amylovora ATCC BAA-2158]
          Length = 204

 Score =  180 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 96/205 (46%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+  GV Y +  P+     L  I     +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPAVLIEASGVGYEVQMPMTCFYELPDIRQEAVIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L  V GVG ++A+ +LS ++A + V ++       + ++PG+  K 
Sbjct: 61  FGFNSKPERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVERGEIAALVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVV-QQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +   +   +   D       +    +       A++AL  LGY   +A+ 
Sbjct: 121 AERLVVEMKDRFKGMHGDLFASDAPFALTSEMPKETGNDAESEAVAALTALGYKPQEASR 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +  +    K  AD   +IR ALRA
Sbjct: 181 MIGKI---GKPDADCETLIREALRA 202


>gi|291617754|ref|YP_003520496.1| RuvA [Pantoea ananatis LMG 20103]
 gi|291152784|gb|ADD77368.1| RuvA [Pantoea ananatis LMG 20103]
          Length = 204

 Score =  180 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 100/205 (48%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L  +     +F +  +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLEAHGVGYEVHMPMTCFYELPDLNHEAVIFTQFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PG+  K 
Sbjct: 61  FGFNSKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVEKEEIAALVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVV-QQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +   +   +   D +                  A++ALV+LGY   +A+ 
Sbjct: 121 AERLVVEMKDRFKGMHGDLFGGDSAFTLTTPGPEPETNDAESEAVAALVSLGYKPQEASR 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +  V +     AD   +IR ALRA
Sbjct: 181 MISKVGR---PDADCETLIREALRA 202


>gi|318605500|emb|CBY26998.1| holliday junction DNA helicase RuvA [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 205

 Score =  180 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y +  P+     L  IG    +F +  +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLETNGVGYEVQLPMTCFYELPDIGQEAIIFTQFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V ++  ++   + ++PG+  K 
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC--SMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   L+  +  +   +    ++    S       A SALV LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNTGDIQLPASNSSQISEADIEAEAASALVALGYKPQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             V  + K     AD   +IR ALRA
Sbjct: 181 RLVSKIAK---PGADCEALIRDALRA 203


>gi|114563352|ref|YP_750865.1| Holliday junction DNA helicase RuvA [Shewanella frigidimarina NCIMB
           400]
 gi|122299598|sp|Q081N8|RUVA_SHEFN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|114334645|gb|ABI72027.1| Holliday junction DNA helicase RuvA [Shewanella frigidimarina NCIMB
           400]
          Length = 205

 Score =  180 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 107/207 (51%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       V++DV GV Y +  P+ +   L  +     LF    +R+D   L
Sbjct: 1   MIGRLSGILVEKQAPEVVLDVNGVGYELQVPMTSFYELPALNQAAMLFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  +R  F LL    GVG ++A+ +LS +TA+E V  +   +   + ++PG+  K 
Sbjct: 61  YGFITKQERALFRLLIKTNGVGPKLALTILSGMTASEFVSCVERDDIATLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E++ K  SL  +S   +    +        ++ S   +AISAL++LGY   QA+
Sbjct: 121 AERLVIEMRDKLKSLLEASAGSEREFMLQSNYTPAAAVDSAEEDAISALLSLGYKPAQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            +V +  K+         +I+ AL+++
Sbjct: 181 KSVSAAFKE---GMSSETLIKAALKSM 204


>gi|145297804|ref|YP_001140645.1| Holliday junction DNA helicase RuvA [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|166229628|sp|A4SJ25|RUVA_AERS4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|142850576|gb|ABO88897.1| holliday junction DNA helicase RuvA [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 204

 Score =  180 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 101/206 (49%), Gaps = 4/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VL++V G+ Y +  P+     L +IG   T+     +R+D   L
Sbjct: 1   MIGRLRGVVIEKQPPEVLLEVGGLGYEVQMPMSCFYDLPEIGKEVTIHTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L    GVG ++A+ +LS +TAT+ V S+  +    + ++PG+  K 
Sbjct: 61  YGFNHKQERALFRELIKTNGVGPKLALAILSGMTATQFVLSVEREEISSLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQ-AHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +     S      + ++      +   P  +  A SALV LGY   QA+ 
Sbjct: 121 AERLVVEMKDRLKGWVSHDLFSPAEISLPARESVLRAPDSSEEAASALVALGYKPQQASQ 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            V  + K+         IIR +LR++
Sbjct: 181 IVSKIAKE---GMSVEDIIRESLRSL 203


>gi|90411664|ref|ZP_01219674.1| Holliday junction DNA helicase motor protein [Photobacterium
           profundum 3TCK]
 gi|90327554|gb|EAS43907.1| Holliday junction DNA helicase motor protein [Photobacterium
           profundum 3TCK]
          Length = 206

 Score =  180 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 58/208 (27%), Positives = 98/208 (47%), Gaps = 6/208 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G I       VLIDV G+ Y +  P+     L ++G    +     +R+D   L
Sbjct: 1   MIGRLSGTILEKQPPEVLIDVGGIGYEVQMPMSCFYELPEVGQAAVICTHFIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  +    GVG ++ + +LS +TA++ V S+  ++   + +IPG+  K 
Sbjct: 61  YGFNKKSERELFREVIKANGVGPKLGLAILSAMTASQFVLSVENEDITTLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSS---VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A R++ E++ +               +  +  +    S       A+SAL+ LGY   QA
Sbjct: 121 AERLVIEMRDRLKGWGEGDLFTPASDAAASNAEVQQYSSARAEDEAVSALIALGYKAPQA 180

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
              V  V+K E        IIR ALR++
Sbjct: 181 AKVVSQVVKPE---MSSENIIREALRSM 205


>gi|127513004|ref|YP_001094201.1| Holliday junction DNA helicase RuvA [Shewanella loihica PV-4]
 gi|166200262|sp|A3QEP4|RUVA_SHELP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|126638299|gb|ABO23942.1| Holliday junction DNA helicase RuvA [Shewanella loihica PV-4]
          Length = 205

 Score =  180 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 57/207 (27%), Positives = 106/207 (51%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLI+  GV Y +  P+ +   L ++     ++    +R+D   L
Sbjct: 1   MIGRLRGLLVEKQAPEVLIETGGVGYEVQMPLTSFYELPELNQEAVIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  +R  F LL    GVG ++A+ +LS +TA E V+ +   +   + ++PG+  K 
Sbjct: 61  YGFITKQERALFRLLIKTNGVGPKLALTILSGMTAGEFVKCVEHDDIATLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQD--MSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E++ K  SL      +     +         + +   +AISAL+ LGY   QA+
Sbjct: 121 AERLLVEMRDKLKSLMEASHGNEREFVLQSNYTPAPVVNTAEEDAISALLALGYKPAQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            AV SV ++     D   +I+ +L+++
Sbjct: 181 KAVSSVFEE---GMDSETLIKASLKSM 204


>gi|312882586|ref|ZP_07742326.1| Holliday junction DNA helicase RuvA [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369746|gb|EFP97258.1| Holliday junction DNA helicase RuvA [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 205

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 53/207 (25%), Positives = 103/207 (49%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI+V G+ Y +  P+     L  IG+   ++    +R+D   L
Sbjct: 1   MIGRLRGILVEKQPPELLIEVNGLGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TA++ V S+  ++   + ++PG+  K 
Sbjct: 61  YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVASVEREDISTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +        +          ++    S+ +    A+SAL+ LGY   QA+
Sbjct: 121 AERLVVEMKDRLKGWSAGDLFTPYTDAAVADKLPESSVSNAEEEAVSALLALGYKPTQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
             V  V+          ++IR AL+++
Sbjct: 181 KVVSQVM---VEGMSSEKLIREALKSM 204


>gi|156933560|ref|YP_001437476.1| Holliday junction DNA helicase RuvA [Cronobacter sakazakii ATCC
           BAA-894]
 gi|166230549|sp|A7MEA2|RUVA_ENTS8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|156531814|gb|ABU76640.1| hypothetical protein ESA_01380 [Cronobacter sakazakii ATCC BAA-894]
          Length = 203

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 102/204 (50%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VL++  GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIVLEKQPPLVLLEAGGVGYEVHMPMTCFYELPETGKEAVVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  FGFNNKQERTLFRELIKVNGVGPKLALAILSGMSAQQFVNAVEREEPAALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L   +    + +        ++      A++ALV+LGY   +A+  
Sbjct: 121 AERLVVEMKDRFKGLHGDLFTPAADLVLTSPASPAVDDAEAEAVAALVSLGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  V + +   A    +IR ALRA
Sbjct: 181 VSKVAQAD---ASSETLIREALRA 201


>gi|167623851|ref|YP_001674145.1| Holliday junction DNA helicase RuvA [Shewanella halifaxensis
           HAW-EB4]
 gi|189045770|sp|B0TSA6|RUVA_SHEHH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|167353873|gb|ABZ76486.1| Holliday junction DNA helicase RuvA [Shewanella halifaxensis
           HAW-EB4]
          Length = 205

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 62/207 (29%), Positives = 109/207 (52%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +       VL+DV GV Y I  P+ +   L ++G    ++    +R+D   L
Sbjct: 1   MIGRIRGLLIEKQAPEVLVDVSGVGYEIQMPLTSFYELPELGQEAVIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+S  +R  F LL    GVG ++ + +LS +TA E V  +   +   + ++PG+  K 
Sbjct: 61  YGFISKQERSLFRLLIKANGVGPKLGLTILSGMTAREFVACVERDDIATLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E++ K  SL  +SV  +    +        ++ +   +AI+AL++LGY   QA+
Sbjct: 121 AERLLVEMRDKLKSLMEASVGSEREFMLQSNYTAPEAVNTAEEDAIAALLSLGYKPAQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            AV SV     +      +I+ AL+++
Sbjct: 181 KAVSSVYT---DGMSSETLIKSALKSM 204


>gi|325274574|ref|ZP_08140632.1| Holliday junction DNA helicase RuvA [Pseudomonas sp. TJI-51]
 gi|324100301|gb|EGB98089.1| Holliday junction DNA helicase RuvA [Pseudomonas sp. TJI-51]
          Length = 205

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 111/205 (54%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      +++IDV GV Y +  P+ TL  L K+G+  T+     +R+D   L
Sbjct: 1   MIGRLRGTLAEKQPPHLIIDVNGVGYELEVPMTTLYRLPKVGETVTVHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + ++PG+  K 
Sbjct: 61  YGFAEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALVRVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +         + V+       S  S   +AISALV+LGY   +A+ A
Sbjct: 121 AERLLVELKDRFKAW-ETSPAMFTLVSDGPLPAASASSAEADAISALVSLGYKPQEASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++  K+K      ++IR +L+ +
Sbjct: 180 IAAI--KDKAGLSSEELIRRSLKGM 202


>gi|119774975|ref|YP_927715.1| Holliday junction DNA helicase RuvA [Shewanella amazonensis SB2B]
 gi|166200259|sp|A1S6N9|RUVA_SHEAM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|119767475|gb|ABM00046.1| Holliday junction DNA helicase RuvA [Shewanella amazonensis SB2B]
          Length = 205

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 61/207 (29%), Positives = 108/207 (52%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++KG +   +   VLIDV GV Y +  P+ +   L   G    ++    +R+D   L
Sbjct: 1   MIGRLKGILVEKHAPEVLIDVGGVGYELQMPLTSFYELPLPGAEVIVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   +R  F LL    GVG ++A+ +LS +TA E +  +   +   + ++PG+  K 
Sbjct: 61  YGFIHKEERSLFRLLIKANGVGPKLALTILSGMTAKEFIGCLERDDIATLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E++ K  SL  +S+  +    +           +   +AI+AL++LGY   QA+
Sbjct: 121 AERLLVEMRDKLKSLMEASMGAEREFVLKSNFTPAPVAATVEEDAIAALLSLGYKPQQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            AV S  ++     D  Q+I+ AL+++
Sbjct: 181 KAVSSAFQE---GMDPEQLIKAALKSM 204


>gi|332161518|ref|YP_004298095.1| Holliday junction DNA helicase RuvA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325665748|gb|ADZ42392.1| Holliday junction DNA helicase RuvA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330860793|emb|CBX71080.1| holliday junction ATP-dependent DNA helicase ruvA [Yersinia
           enterocolitica W22703]
          Length = 205

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y +  P+     L  IG    +F +  +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLETNGVGYEVQLPMTCFYELPDIGQEAIIFTQFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V ++  ++   + ++PG+  K 
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC--SMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   L+  +  ++  +    ++    S       A SALV LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNIGDIQLPASNSSQISEADIEAEAASALVALGYKPQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             V  + K     AD   +IR ALRA
Sbjct: 181 RLVSKIAK---PGADCEALIRDALRA 203


>gi|85059239|ref|YP_454941.1| Holliday junction DNA helicase motor protein [Sodalis glossinidius
           str. 'morsitans']
 gi|123752615|sp|Q2NTI9|RUVA_SODGM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|84779759|dbj|BAE74536.1| holliday junction DNA helicase RuvA [Sodalis glossinidius str.
           'morsitans']
          Length = 205

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 98/206 (47%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPQVLLETHGVGYEVFMPMTCFYALPETGQEAVIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+   +R  F  L  V GVG ++A+ +LS ++A + + ++  Q    + ++PG+  K 
Sbjct: 61  FGFIHKQERVLFRELIKVNGVGPKLALAILSGMSAQQFISAVERQEINALVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM--PSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   LS  +           A             A++ALV LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLSGDLFVPQGAGEIPAAIDAPAMPADPEGEAVAALVALGYKPQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             V  V       +D   +IR ALRA
Sbjct: 181 RMVSKVASA---GSDCEMLIRDALRA 203


>gi|300023944|ref|YP_003756555.1| Holliday junction DNA helicase RuvA [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525765|gb|ADJ24234.1| Holliday junction DNA helicase RuvA [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 205

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 83/206 (40%), Positives = 124/206 (60%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++ + E ++++DV GV Y +    RTL  L K GD  TL ++TH+R+D IRL
Sbjct: 1   MIGKLKGKVDAIGESFLIVDVHGVGYEVQASSRTLRNL-KPGDDVTLTIDTHVREDAIRL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S+ +R WF  LQ++QGVGA+VA+ VL  +   E+  +++L N   + + PG+  K+
Sbjct: 60  FGFQSEFERSWFRTLQTIQGVGAKVALSVLGVLGPQEIANAVVLGNWAAVEEAPGVGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK KA SL S+     +      A +  +   A  AISAL NLGY   QA  A
Sbjct: 120 ALRIVAELKDKAPSL-SLAGLPATPGGGPAAAVAPVGLPAAEAISALTNLGYNPAQANQA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V    ++    AD + +I+ AL+ ++
Sbjct: 179 VALASRELGEAADTAALIKRALKELA 204


>gi|259908219|ref|YP_002648575.1| Holliday junction DNA helicase RuvA [Erwinia pyrifoliae Ep1/96]
 gi|224963841|emb|CAX55343.1| Holliday junction ATP-dependent DNA helicase [Erwinia pyrifoliae
           Ep1/96]
 gi|283478149|emb|CAY74065.1| Holliday junction ATP-dependent DNA helicase ruvA [Erwinia
           pyrifoliae DSM 12163]
 gi|310767866|gb|ADP12816.1| Holliday junction DNA helicase RuvA [Erwinia sp. Ejp617]
          Length = 204

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 99/205 (48%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+  GV Y +  P+     L ++     +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPAVLIEASGVGYEVQMPMTCFYELPELQQEAVIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L  V GVG ++A+ +LS ++A + V ++       + ++PG+  K 
Sbjct: 61  FGFNSKPERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVERGEIAALVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVV-QQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +   +   +   D       +    +       A++AL+ LGY   +A+ 
Sbjct: 121 AERLVVEMKDRFKGMHGDLFASDAPFALTSEMTKETGNDAESEAVAALIALGYKPQEASR 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +   +K  K  AD   +IR ALRA
Sbjct: 181 MI---VKTGKPDADCETLIREALRA 202


>gi|121998991|ref|YP_001003778.1| Holliday junction DNA helicase RuvA [Halorhodospira halophila SL1]
 gi|166230558|sp|A1WZ64|RUVA_HALHL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|121590396|gb|ABM62976.1| Holliday junction DNA helicase RuvA [Halorhodospira halophila SL1]
          Length = 204

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 52/204 (25%), Positives = 88/204 (43%), Gaps = 6/204 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +       ++++  G+ Y +  P+ T+  L + G    L     +R+D   L
Sbjct: 1   MIARLRGTLLEKRPPTLVVEANGLGYEVEAPLSTIEALPETGREVILHTHLSVREDGQTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L  V GVG ++ + +LS +   ELV  +   + K + Q+PGI  K 
Sbjct: 61  FGFRTRAERDLFRRLIRVSGVGPKLGLALLSGVDGEELVRCVRDDDPKRLTQVPGIGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +   +        +                  AI  LV LGY   +A   
Sbjct: 121 AERLIVELRDRLDGVGGGSTAAPAAGADH---PTGENDPVSEAIEGLVALGYKPPEAARM 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
             +  + E        IIR AL+ 
Sbjct: 178 ARNAAEPELGC---EAIIRRALQR 198


>gi|116748437|ref|YP_845124.1| Holliday junction DNA helicase RuvA [Syntrophobacter fumaroxidans
           MPOB]
 gi|166231451|sp|A0LGY7|RUVA_SYNFM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|116697501|gb|ABK16689.1| Holliday junction DNA helicase subunit RuvA [Syntrophobacter
           fumaroxidans MPOB]
          Length = 197

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 108/206 (52%), Gaps = 9/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +     DY++IDV GV YI+Y P+ T   L   GD   L + TH+R+D I+L
Sbjct: 1   MIGHLEGRLRHKAPDYIVIDVHGVGYIVYVPLSTFYDLPGPGDTVALNIHTHIREDAIQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++  F+ L +V GVG R+A+ +LS +T  +L   I+ Q    +  IPG+  KI
Sbjct: 61  YGFRTVAEKDMFLRLITVNGVGPRLAVNILSGLTPDDLHRIILQQEGFRLKSIPGVGKKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL+ K         +  +          +  S   +A SALVNLGY   +A  A
Sbjct: 121 AERILLELRDKMSVKKGREAEQPA---------PAAESSYGDAYSALVNLGYRPAEAEKA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +   +K         ++++  LR ++
Sbjct: 172 LGKAIKSLGADPPVEKLLKETLRLLA 197


>gi|304396235|ref|ZP_07378117.1| Holliday junction DNA helicase RuvA [Pantoea sp. aB]
 gi|304356604|gb|EFM20969.1| Holliday junction DNA helicase RuvA [Pantoea sp. aB]
          Length = 204

 Score =  179 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++GNI       VL++  GV Y IY P+     L ++     +F    +R+D   L
Sbjct: 1   MIGRLRGNILEKQPPLVLLEAHGVGYEIYMPMTCFYELPELQHEAVIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PG+  K 
Sbjct: 61  FGFNSKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVEKEEIASLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVV-QQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +   +   +   D +      +           A++ALV+LGY   +A+ 
Sbjct: 121 AERLVVEMKDRFKGMHGDLFGGDSAFTLTTPSAEPETNDAESEAVAALVSLGYKPQEASR 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +  V +     AD   +IR ALRA
Sbjct: 181 MISKVGR---PDADCETLIREALRA 202


>gi|301155728|emb|CBW15196.1| component of RuvABC resolvasome, regulatory subunit [Haemophilus
           parainfluenzae T3T1]
          Length = 203

 Score =  179 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 67/204 (32%), Positives = 100/204 (49%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++KG +       +L+DVQGV Y +  P+ +   L +IG   TLF    +R+D   L
Sbjct: 1   MIGRLKGILLEKQPPEILLDVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  +   +I  +    + +IPG+  K 
Sbjct: 61  FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVDQFAYAIEREELSKLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK   +        S      + +    S A  AI+AL+ LGY    A   
Sbjct: 121 AERLLVELKGKFKDVRQSDFFVESKHIPSTSELRQAESSADEAIAALIALGYKPTDAEKM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  V K +       Q+IR AL+A
Sbjct: 181 VKKVAKAD---LSSEQLIREALKA 201


>gi|330828297|ref|YP_004391249.1| Holliday junction ATP-dependent DNA helicase ruvA [Aeromonas
           veronii B565]
 gi|328803433|gb|AEB48632.1| Holliday junction ATP-dependent DNA helicase ruvA [Aeromonas
           veronii B565]
          Length = 229

 Score =  179 bits (453), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 4/205 (1%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           IG+++G +       VL++V GV Y +  P+     L +IG   T+     +R+D   L+
Sbjct: 27  IGRLRGIVIEKQPPEVLLEVGGVGYEVQMPMSCFYDLPEIGKEATIHTHFVVREDAQLLY 86

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF    +R  F  L    GVG ++A+ +LS +TAT+ V S+  +    + ++PG+  K A
Sbjct: 87  GFNHKQERALFRELIKTNGVGPKLALAILSGMTATQFVLSVEREEISSLVKLPGVGKKTA 146

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC-SMPSFAINAISALVNLGYGQDQATTA 180
            R++ E+K +     S      + V    +      P     A SALV LGY   QA+  
Sbjct: 147 ERLVVEMKDRLKGWVSHDLFSPAMVTLPASEPELRAPDVTEEAASALVALGYKPQQASQI 206

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  + K+         IIR +LR++
Sbjct: 207 VSKIAKE---GMSVEDIIRESLRSL 228


>gi|152979457|ref|YP_001345086.1| Holliday junction DNA helicase motor protein [Actinobacillus
           succinogenes 130Z]
 gi|171704337|sp|A6VQA4|RUVA_ACTSZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|150841180|gb|ABR75151.1| Holliday junction DNA helicase RuvA [Actinobacillus succinogenes
           130Z]
          Length = 204

 Score =  179 bits (453), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 98/205 (47%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L+DVQG+ Y +  P+ +   L   G  CT+F    +R+D   L
Sbjct: 1   MIGRLQGKLIEKQPPEILLDVQGIGYELLLPMTSFYNLPDTGQECTVFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  DR  F  L    GVG ++A+ +LS ++  E   +I  +    + +IPG+  K 
Sbjct: 61  FGFSTKTDRTLFRELIKTNGVGPKLALAILSAMSVHEFAYAIEREELSKLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELKGK   L       +   +           +    A++ALV LGY   +A  
Sbjct: 121 AERLLVELKGKFKGLRQPDFFVESKHITVPDIVSAEKETPNDEAVAALVALGYKPPEAAK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  V   +       Q+IR AL+A
Sbjct: 181 MVKKVANGD---LTSEQLIREALKA 202


>gi|153875446|ref|ZP_02003246.1| Holliday junction ATP-dependent DNA helicase ruvA [Beggiatoa sp.
           PS]
 gi|152068090|gb|EDN66754.1| Holliday junction ATP-dependent DNA helicase ruvA [Beggiatoa sp.
           PS]
          Length = 203

 Score =  179 bits (453), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 54/204 (26%), Positives = 105/204 (51%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +       +++DVQGV Y ++ P+ T   L +I    +L     +R+D   L
Sbjct: 1   MISRLRGLLIEKQPPLLVVDVQGVGYEVFAPMSTFYNLPEINAEISLLTHLSIREDAHVL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL++ +R  F  L  V G+G ++A+ +LS +  +  V+ +   ++  + +IPG+  K+
Sbjct: 61  YGFLNESERGLFRDLIRVSGIGPKLALSILSSMELSMFVQCVNNNDTARLIRIPGVGKKM 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ +  + ++      S           + +   +AISAL+ LGY    AT  
Sbjct: 121 AERLVVEMRDRLKNWNTTNNTAPSPTTTSSTLTLGIATPIEDAISALIALGYKPQDATRW 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V +V ++         +IR AL++
Sbjct: 181 VQAVAEE---GLTSEVLIRRALQS 201


>gi|254504698|ref|ZP_05116849.1| Holliday junction DNA helicase RuvA [Labrenzia alexandrii DFL-11]
 gi|222440769|gb|EEE47448.1| Holliday junction DNA helicase RuvA [Labrenzia alexandrii DFL-11]
          Length = 205

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 84/206 (40%), Positives = 133/206 (64%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   ED+V++DV GV Y ++CP R L  L + G+   LF+ET +R+D IRL
Sbjct: 1   MIGKLKGTIDSYGEDHVILDVHGVGYQVHCPSRILQALPRAGEAAVLFIETIVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ +R+WF +L +VQGVGA+VA+G+L  + A+E+  +I L +   I++ PG+  ++
Sbjct: 61  YGFAAEAEREWFRILMTVQGVGAKVALGILGILKASEVANAIALGDKATISRAPGVGKRV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI++ELK KA  L+S+ Q  ++       ++ + P     A+SAL NLGYGQ QA+ A
Sbjct: 121 AERILSELKDKAPGLASIDQDTIAVSQTVADNVAARP--VAEAVSALTNLGYGQPQASAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V   ++     A    +IRL L+ ++
Sbjct: 179 VAKAMQSAGEDATTETLIRLGLKELA 204


>gi|322832435|ref|YP_004212462.1| Holliday junction DNA helicase RuvA [Rahnella sp. Y9602]
 gi|321167636|gb|ADW73335.1| Holliday junction DNA helicase RuvA [Rahnella sp. Y9602]
          Length = 204

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 104/205 (50%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L ++G    +F +  +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLLETNGVGYEVHMPMTCFYELPELGQEAIIFTQFIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PG+  K 
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAVEKEEITALIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN-KEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +   L+  +  + + +     A           A++AL++LGY   +A+ 
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNHTDITLPASASKAKESDAEGEAVAALISLGYKPPEASR 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +  V K     A+   +IR ALRA
Sbjct: 181 MISKVAK---PGAESETLIREALRA 202


>gi|325579043|ref|ZP_08148999.1| crossover junction ATP-dependent DNA helicase RuvA [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159278|gb|EGC71412.1| crossover junction ATP-dependent DNA helicase RuvA [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 203

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 65/203 (32%), Positives = 98/203 (48%), Gaps = 3/203 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L+DVQGV Y +  P+ +   L +IG   TLF    +R+D   L
Sbjct: 1   MIGRLTGILLEKQPPEILLDVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  +   +I  +    + +IPG+  K 
Sbjct: 61  FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK   +        S      + +    S A  A++ALV LGY    A   
Sbjct: 121 AERLLVELKGKFKDVRQSDFFVESKHIPSTSELRQAESSADEAVAALVALGYKPTDAEKM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  V K +       Q+IR AL+
Sbjct: 181 VKKVAKAD---LTSEQLIREALK 200


>gi|261493369|ref|ZP_05989895.1| crossover junction endonuclease RuvA [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261496635|ref|ZP_05993015.1| crossover junction endonuclease RuvA [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261307838|gb|EEY09161.1| crossover junction endonuclease RuvA [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261311013|gb|EEY12190.1| crossover junction endonuclease RuvA [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 201

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 67/203 (33%), Positives = 103/203 (50%), Gaps = 5/203 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G I       +L+DVQGV Y +  P+ +   L +IG+  T+F    +R+D   L
Sbjct: 1   MIGRLHGKIIEKQPPEILLDVQGVGYELLLPMTSFYSLPQIGEEATIFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++ ++   +I  +    + +IPGI  K 
Sbjct: 61  FGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFATAIENEELAKLTKIPGIGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK   ++         V+ EQ    + P  A  A+ AL+ LGY    A   
Sbjct: 121 AERLLVELKGKFKRMAQ--SDFFVEVSHEQIVASNTPDPANEALDALIALGYKPADAEKM 178

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           +  V    K+ A   Q+IR AL+
Sbjct: 179 IKKV---NKSGATSEQLIREALK 198


>gi|308125357|ref|ZP_05774780.2| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus K5030]
 gi|308113231|gb|EFO50771.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus K5030]
          Length = 223

 Score =  178 bits (452), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 101/205 (49%), Gaps = 4/205 (1%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           IG+++G +       VLI+V G+ Y +  P+     L  IG+   ++    +R+D   L+
Sbjct: 21  IGRLRGILLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLLY 80

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF +  +R  F  +    GVG ++ +G+LS +TA++ V  +  ++   + ++PG+  K A
Sbjct: 81  GFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDVSTLVKLPGVGKKTA 140

Query: 122 SRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
            R++ E+K +     +  +    +      +   S  S    A+SAL+ LGY   QA+  
Sbjct: 141 ERLVVEMKDRLKGWGAGDLFTPFTDAAPTDSAAASSNSAEEEAVSALLALGYKPTQASKV 200

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  + K         Q+IR AL+++
Sbjct: 201 VSQIAK---PDMSSEQLIREALKSM 222


>gi|119944489|ref|YP_942169.1| Holliday junction DNA helicase RuvA [Psychromonas ingrahamii 37]
 gi|166230588|sp|A1SSV5|RUVA_PSYIN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|119863093|gb|ABM02570.1| Holliday junction DNA helicase subunit RuvA [Psychromonas
           ingrahamii 37]
          Length = 207

 Score =  178 bits (452), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 56/209 (26%), Positives = 99/209 (47%), Gaps = 7/209 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLI+V G+ Y +  P+ +   L   G    ++    +R+D   L
Sbjct: 1   MIGRLRGVLLEKQPPEVLIEVSGIGYEVQLPMSSFYALPDAGQEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V+ I       + ++PG+  K 
Sbjct: 61  YGFADKHERAMFRELIKVNGVGPKLALAILSGMSANQFVQCIHNDAVTTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSV----VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ E+K +  + +         D      E  +  +  +    AISALV+LGY    
Sbjct: 121 AERLVVEMKDRLKNWTGADLLTPASDKMVFENEFTNSAASGNAKDEAISALVSLGYKPVL 180

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A  A+  V        D   +IR +L+++
Sbjct: 181 AEKAIQQVY---VEGMDCEALIRSSLKSM 206


>gi|254360614|ref|ZP_04976763.1| crossover junction endonuclease RuvA [Mannheimia haemolytica
           PHL213]
 gi|153091154|gb|EDN73159.1| crossover junction endonuclease RuvA [Mannheimia haemolytica
           PHL213]
          Length = 201

 Score =  178 bits (451), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 67/203 (33%), Positives = 103/203 (50%), Gaps = 5/203 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G I       +L+DVQGV Y +  P+ +   L +IG+  T+F    +R+D   L
Sbjct: 1   MIGRLHGKIIEKQPPEILLDVQGVGYELLLPMTSFYSLPQIGEEATIFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++ ++   +I  +    + +IPGI  K 
Sbjct: 61  FGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFATAIENEELAKLTKIPGIGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK   ++         V+ EQ    + P  A  A+ AL+ LGY    A   
Sbjct: 121 AERLLVELKGKFKGMAQ--SDFFVEVSHEQIVASNTPDPANEALDALIALGYKPADAEKM 178

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           +  V    K+ A   Q+IR AL+
Sbjct: 179 IKKV---NKSGATSEQLIREALK 198


>gi|88811437|ref|ZP_01126692.1| Holliday junction DNA helicase motor protein [Nitrococcus mobilis
           Nb-231]
 gi|88791326|gb|EAR22438.1| Holliday junction DNA helicase motor protein [Nitrococcus mobilis
           Nb-231]
          Length = 203

 Score =  178 bits (451), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 101/204 (49%), Gaps = 6/204 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LIDVQGV Y +  P+ T   L   G+  TL     +++D   L
Sbjct: 1   MIGRLRGILLEKQPPRLLIDVQGVGYEVEAPMSTFYELPAQGEAITLRTHLAIKEDGHTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ +R  F  L  V GVG ++A+  LS +   E +  +  +++  + ++PG+  K 
Sbjct: 61  YGFHTEQERALFRSLIRVSGVGPKMALAFLSGMRTEEFLWCVRQRDTAALIRLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ +  +L+    Q  +      +           A+SAL+ LGY   +A   
Sbjct: 121 AERLIVEMQDRLSALA---TQASTAAGASFSAAGGANEAFTEAMSALLALGYKTPEAQQL 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           +  + + E       ++IRLALR 
Sbjct: 178 LAGLAEAE---LSSEELIRLALRK 198


>gi|161936318|ref|YP_129329.2| Holliday junction DNA helicase RuvA [Photobacterium profundum SS9]
 gi|90135510|sp|Q6LT49|RUVA_PHOPR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
          Length = 206

 Score =  178 bits (451), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 58/208 (27%), Positives = 98/208 (47%), Gaps = 6/208 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G I       VLIDV G+ Y +  P+     L ++G    +     +R+D   L
Sbjct: 1   MIGRLSGTILEKQPPEVLIDVGGIGYEVQMPMSCFYELPEVGQAAVICTHFIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  +    GVG ++ + +LS +TA++ V S+  ++   + +IPG+  K 
Sbjct: 61  YGFNKKSERELFREVIKANGVGPKLGLAILSAMTASQFVLSVENEDITTLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSS---VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A R++ E++ +               +  +  +    S       A+SAL+ LGY   QA
Sbjct: 121 AERLVIEMRDRLKGWGEGDLFTPASDAAASNAEIQKYSSARAEDEAVSALIALGYKALQA 180

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
              V  V+K E        IIR ALR++
Sbjct: 181 AKVVSQVVKPE---MSSENIIREALRSM 205


>gi|307545151|ref|YP_003897630.1| Holliday junction DNA helicase motor protein [Halomonas elongata
           DSM 2581]
 gi|307217175|emb|CBV42445.1| Holliday junction DNA helicase motor protein [Halomonas elongata
           DSM 2581]
          Length = 203

 Score =  178 bits (451), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 52/207 (25%), Positives = 98/207 (47%), Gaps = 6/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV GV Y +   + TL  L   G+  +L+    +R D   L
Sbjct: 1   MIGRLRGTLLEKQPPWLVVDVAGVGYELEASMTTLVALPGCGEDVSLYTHLSVRDDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + +R  F  L  V G+G ++A+ +LS +     +  ++  + K + ++PG+  K 
Sbjct: 61  YGFAREQERSLFRALIKVNGIGPKLALAILSGMDEDAFIRCVMDDDIKALTRLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ +        Q          A   S      +A +ALV+LGY   +AT  
Sbjct: 121 AERLVIEMRDRFPHWQDSTQVSAGDAG-MGATTPSPKDPLADAEAALVSLGYKPSEATRM 179

Query: 181 VVSVLKKEKNIADDSQIIRLAL-RAIS 206
               L   ++      +I+ AL R ++
Sbjct: 180 ----LSGLEDEGSTEAMIKAALARRMA 202


>gi|238919502|ref|YP_002933017.1| Holliday junction DNA helicase RuvA [Edwardsiella ictaluri 93-146]
 gi|238869071|gb|ACR68782.1| holliday junction DNA helicase RuvA, putative [Edwardsiella
           ictaluri 93-146]
          Length = 204

 Score =  178 bits (451), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 56/203 (27%), Positives = 99/203 (48%), Gaps = 4/203 (1%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           IG+++G I       V+++  GV Y +  P+     L ++G    +F    +R+D   L+
Sbjct: 4   IGRLRGTILEKQPPQVVLEAHGVGYEVQMPMTCFYELPQVGSEAVIFTHFVVREDAQLLY 63

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF +  +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PG+  K A
Sbjct: 64  GFNNKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVEREEVAALVKLPGVGKKTA 123

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
            R++ E+K +   LS  +    +      A   +       A++AL+ LGY   +A+  V
Sbjct: 124 ERLVVEMKDRFKGLSGDLFTP-ADAQLPSAQPQAQADAEGEAVAALIALGYKPQEASRLV 182

Query: 182 VSVLKKEKNIADDSQIIRLALRA 204
             V       AD   +IR ALRA
Sbjct: 183 NRVAVA---GADSETLIRDALRA 202


>gi|157962184|ref|YP_001502218.1| Holliday junction DNA helicase RuvA [Shewanella pealeana ATCC
           700345]
 gi|189045771|sp|A8H546|RUVA_SHEPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|157847184|gb|ABV87683.1| Holliday junction DNA helicase RuvA [Shewanella pealeana ATCC
           700345]
          Length = 205

 Score =  177 bits (450), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 61/207 (29%), Positives = 108/207 (52%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +       VL+DV GV Y +  P+ +   L ++G    ++    +R+D   L
Sbjct: 1   MIGRIRGILIEKQAPEVLVDVSGVGYELQMPLTSFYELPELGQEAVIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+S  +R  F LL    GVG ++ + +LS +TA E V  +   +   + ++PG+  K 
Sbjct: 61  YGFVSKQERSLFRLLIKANGVGPKLGLTILSGMTAGEFVACVERDDIATLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E++ K  SL  +SV  +    +         + +   +AI+AL++LGY   QA+
Sbjct: 121 AERLLVEMRDKLKSLMEASVGSEREFMLQSNYKASEVVNTAEEDAIAALLSLGYKPAQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            AV SV     +      +I+ AL+++
Sbjct: 181 KAVSSVYT---DGMSSETLIKSALKSM 204


>gi|188533631|ref|YP_001907428.1| Holliday junction DNA helicase RuvA [Erwinia tasmaniensis Et1/99]
 gi|229560030|sp|B2VJ94|RUVA_ERWT9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|188028673|emb|CAO96535.1| Holliday junction ATP-dependent DNA helicase [Erwinia tasmaniensis
           Et1/99]
          Length = 204

 Score =  177 bits (450), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+  GV Y +  P+     L  I     +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPVVLIEASGVGYEVQMPMTCFYELPDIQHEAIIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PG+  K 
Sbjct: 61  FGFNSKPERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVEREEIAALVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVV-QQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +   +   +   D       +    +       A++AL  LGY   +A+ 
Sbjct: 121 AERLVVEMKDRFKGMHGDLFASDAPFALTSEMPKETANDAEGEAVAALTALGYKPQEASR 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +V V    K  AD   +IR ALRA
Sbjct: 181 MIVKV---GKPDADCETLIREALRA 202


>gi|329893679|ref|ZP_08269813.1| Holliday junction DNA helicase RuvA [gamma proteobacterium
           IMCC3088]
 gi|328923606|gb|EGG30918.1| Holliday junction DNA helicase RuvA [gamma proteobacterium
           IMCC3088]
          Length = 205

 Score =  177 bits (450), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 61/204 (29%), Positives = 96/204 (47%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG I+G +       ++++  GV Y I  P+ TL  L  +GD   +     +R+D   L
Sbjct: 1   MIGSIRGRLIVKQPPDIVVEAAGVGYEIQVPMTTLFQLPALGDDVLILTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+ D DRQ F  L  V GVG ++A+ +LS + A      +   +   +  +PG+  K 
Sbjct: 61  YGFVDDTDRQLFRQLIKVNGVGPKLALAILSGMDAVAFARCVGRNDVSALVALPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ +     S +               +    A +A SALV LGY   +A+  
Sbjct: 121 AERLIVEMRDRLGDWLSQLSPQGENAGGIVGATIAHDPIA-DAESALVALGYKPQEASRL 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V SV        D   +IRLALR+
Sbjct: 180 VQSVAGD--QDLDSETLIRLALRS 201


>gi|126668399|ref|ZP_01739356.1| Holliday junction DNA helicase motor protein [Marinobacter sp.
           ELB17]
 gi|126627108|gb|EAZ97748.1| Holliday junction DNA helicase motor protein [Marinobacter sp.
           ELB17]
          Length = 209

 Score =  177 bits (450), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 58/208 (27%), Positives = 105/208 (50%), Gaps = 6/208 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +        +++ QG+ Y +  P+ T   L   G   TL     +R+D   L
Sbjct: 1   MIGRIRGILLEKKPAQAMVECQGLGYEVDIPLSTFLNLPDPGQELTLHTHFVVREDAQSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S LDR  F LL  V GVG ++A+G+LS ++A++ + S+  +++  + ++PG+  K 
Sbjct: 61  FGFSSRLDRDLFRLLIKVNGVGPKLAVGILSGLSASQFIRSVQARDTSALVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNK---EQAHICSMPSFAINAISALVNLGYGQDQA 177
           A R++ E+  +   L    +   +           + +       A +AL+ LGY   +A
Sbjct: 121 AERLLIEMTDRIGQLEGQFELTAASAPGATLPANGMPAANDPREEAEAALIALGYKPQEA 180

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
             A+  + +   +   + Q+IR+ALR +
Sbjct: 181 AKAISRIAE---DGMTNEQLIRMALRNM 205


>gi|34499678|ref|NP_903893.1| Holliday junction DNA helicase RuvA [Chromobacterium violaceum ATCC
           12472]
 gi|44888390|sp|Q7NQB7|RUVA_CHRVO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|34105529|gb|AAQ61883.1| holliday junction DNA helicase [Chromobacterium violaceum ATCC
           12472]
          Length = 197

 Score =  177 bits (450), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 64/205 (31%), Positives = 105/205 (51%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       V++DV GV Y +  P+ T   L  +G  CTLF    +R+D   L
Sbjct: 1   MIGRLSGKLIEKLPPQVVVDVNGVGYEVDVPMTTFYQLPALGQPCTLFTHLAVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +RQ F  L  V G+GA++A+ +LS +TA EL  ++  ++ K ++ +PGI  K 
Sbjct: 61  YGFASKEERQTFRQLIKVTGIGAKIALAILSGMTADELAIAVASEDIKRLSAVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK            +          + P    + ++AL+ LGY + +A  A
Sbjct: 121 AERLVLELRGKL-------ATGGNLTVPGGLPFAATPDEKSDIVNALLALGYNEKEAAAA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
                K        S+ +RLAL+++
Sbjct: 174 ----TKSLPADVTVSEGVRLALKSL 194


>gi|118588334|ref|ZP_01545743.1| Holliday junction DNA helicase motor protein [Stappia aggregata IAM
           12614]
 gi|118439040|gb|EAV45672.1| Holliday junction DNA helicase motor protein [Stappia aggregata IAM
           12614]
          Length = 205

 Score =  177 bits (450), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 85/206 (41%), Positives = 132/206 (64%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   ED+V++DV GV Y ++CP R L  L + G+   LF+ET +R+D IRL
Sbjct: 1   MIGKLKGTIDSYGEDHVILDVHGVGYQVHCPSRILQGLPRPGEAAVLFIETIVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + +R+WF +L +VQGVGA+VA+G+L  + A+E+  +I L +  VI++ PG+  ++
Sbjct: 61  YGFGIEAEREWFRILMTVQGVGAKVALGILGILKASEVANAIALGDKAVISRAPGVGKRV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI++ELK KA  L++V Q  ++       ++ + P     A+SAL NLGY Q QA+ A
Sbjct: 121 AERIISELKDKAPGLATVDQGTIAVSQTIADNVAARP--VAEAVSALTNLGYAQAQASGA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V   L+     A    +IRL L+ ++
Sbjct: 179 VAKALQSAGEDATTETLIRLGLKELA 204


>gi|262276112|ref|ZP_06053921.1| holliday junction DNA helicase RuvA [Grimontia hollisae CIP 101886]
 gi|262219920|gb|EEY71236.1| holliday junction DNA helicase RuvA [Grimontia hollisae CIP 101886]
          Length = 209

 Score =  177 bits (449), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 55/211 (26%), Positives = 103/211 (48%), Gaps = 9/211 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L++V GV Y +  P+     L ++G+   ++    +R+D   L
Sbjct: 1   MIGRLRGILLEKQPPEILLEVNGVGYEVSMPMSCFYELPEVGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + ++R  F  +    GVG ++ + +LS +TAT+ V+S+  ++   + +IPG+  K 
Sbjct: 61  YGFNTTVERALFREVIKANGVGPKLGLAILSGMTATQFVDSVEREDVSTLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLS------SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           A R++ E++ +  +              +   N  +  + +       AISAL+ LGY  
Sbjct: 121 AERLVIEMRDRLKNWHAFDLFTPHADAAVRRANGTETVVAASTDPKDEAISALIALGYKA 180

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
            QA   V  V     +      IIR ALR++
Sbjct: 181 AQAEKVVKQVA---VDGMKSEAIIRDALRSM 208


>gi|183599000|ref|ZP_02960493.1| hypothetical protein PROSTU_02444 [Providencia stuartii ATCC 25827]
 gi|188021215|gb|EDU59255.1| hypothetical protein PROSTU_02444 [Providencia stuartii ATCC 25827]
          Length = 205

 Score =  177 bits (449), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 103/206 (50%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VL+++QGV Y ++ P+     L +IG    +F    +R+D   L
Sbjct: 1   MIGRLRGIVLEKQPPIVLLELQGVGYEVHMPMTCFYELPEIGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V +I  +    + ++PGI  K 
Sbjct: 61  YGFNDKQERALFKELIKVNGVGPKLALAILSGMSAQQFVSAIEQEAISSLVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCV--NKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   L+  +    S +        + S       A +ALV LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNQHSDIKLPDVNVKVSSRADIEAEAATALVALGYKPQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             V  V K     +D   +IR ALRA
Sbjct: 181 RMVSKVAK---PDSDCESLIRDALRA 203


>gi|120598878|ref|YP_963452.1| Holliday junction DNA helicase RuvA [Shewanella sp. W3-18-1]
 gi|146293036|ref|YP_001183460.1| Holliday junction DNA helicase RuvA [Shewanella putrefaciens CN-32]
 gi|166200263|sp|A4Y6S8|RUVA_SHEPC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166200265|sp|A1RJQ3|RUVA_SHESW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|120558971|gb|ABM24898.1| Holliday junction DNA helicase RuvA [Shewanella sp. W3-18-1]
 gi|145564726|gb|ABP75661.1| Holliday junction DNA helicase RuvA [Shewanella putrefaciens CN-32]
 gi|319426434|gb|ADV54508.1| Holliday junction DNA helicase RuvA [Shewanella putrefaciens 200]
          Length = 205

 Score =  177 bits (449), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 108/207 (52%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L+DV GV Y +  P+ +   L +I     ++    +R+D   L
Sbjct: 1   MIGRLRGVLVEKQAPEILMDVNGVGYELQMPLTSFYELPEIDHETVVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  +R  F LL    GVG ++A+ +LS +TA+E V  +   +   + ++PG+  K 
Sbjct: 61  YGFITKQERALFRLLIKTNGVGPKLALTILSGMTASEFVGCVERDDIVTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQD--MSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E++ K  SL            +    +   ++ S   +AISAL++LGY   QA+
Sbjct: 121 AERLLVEMRDKLKSLMEASAGSEREFVLQSNYSPTPTVNSAEEDAISALISLGYKPPQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            +V +  K+     D   +I+ AL+++
Sbjct: 181 KSVSAAYKE---GMDSETLIKAALKSM 204


>gi|254490165|ref|ZP_05103356.1| Holliday junction DNA helicase RuvA [Methylophaga thiooxidans
           DMS010]
 gi|224464651|gb|EEF80909.1| Holliday junction DNA helicase RuvA [Methylophaga thiooxydans
           DMS010]
          Length = 198

 Score =  177 bits (449), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 99/204 (48%), Gaps = 7/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       +++DV GV Y +  P+ T   L  + D  TLF    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPELVLDVHGVGYELSAPMSTFFNLPALNDEVTLFTHMVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           + F ++ +R  F  L  V GVGA++A+ +LS         S+   ++  + ++PG+  K 
Sbjct: 61  YAFATERERLLFRSLLKVNGVGAKLALTILSGSDVDTFARSVQEGDTASLTRLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ +   +SS +  D    +    H+         A+ ALV LGY   +A   
Sbjct: 121 AERLIVEMRDRLKEVSSAMGLDAIVTD----HVKPAAGAKSEAVEALVALGYKAAEADKM 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           + S    +    +  Q+IR AL+ 
Sbjct: 177 LRSF---DTEGMNTEQLIRQALQR 197


>gi|253989949|ref|YP_003041305.1| Holliday junction DNA helicase RuvA [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211639070|emb|CAR67683.1| holliday junction atp-dependent dna helicase ruva (ec 3.6.1.-)
           [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253781399|emb|CAQ84562.1| holliday junction ATP-dependent DNA helicase RuvA [Photorhabdus
           asymbiotica]
          Length = 205

 Score =  177 bits (449), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 102/206 (49%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VL++  GV Y ++ P+     L  IG    LF    +R+D   L
Sbjct: 1   MIGRLRGIVLEKQPPLVLLETNGVGYEVHMPMTCFYELPDIGQETVLFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V +I  +    + ++PG+  K 
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAIEQEAIASLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN--KEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   L+  +    S +N         S       A +ALV+LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNQNSDINLPATAKQTTSDADIEAEAAAALVSLGYKPQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             V  V+K     AD   +IR ALRA
Sbjct: 181 RMVSKVVK---PGADCETLIREALRA 203


>gi|92118982|ref|YP_578711.1| Holliday junction DNA helicase RuvA [Nitrobacter hamburgensis X14]
 gi|91801876|gb|ABE64251.1| Holliday junction DNA helicase subunit RuvA [Nitrobacter
           hamburgensis X14]
          Length = 206

 Score =  177 bits (449), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 90/206 (43%), Positives = 132/206 (64%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   EDYV++DV GV Y ++C  RTL  L   G    L +ET++R+DQI+L
Sbjct: 2   MIGKLKGIIDSYGEDYVILDVGGVGYQVHCASRTLQALPSPGAAAVLSIETYVREDQIKL 61

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +D +R+WF LLQ+VQGVGARVA+ VL  ++  +L  +I L++   +A+ PG+  K+
Sbjct: 62  YGFRTDHEREWFRLLQTVQGVGARVALAVLGTLSPADLANAIALRDKASVARTPGVGPKV 121

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA + ++V    +             P    +AISALVNLGYGQ QAT A
Sbjct: 122 AERIVTELKDKAPAFANVDPAVVHLAG--AIDDARAPRPVRDAISALVNLGYGQPQATAA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +    +   + A+ +Q+IRL L+ ++
Sbjct: 180 IAVASRSAGDDAETAQLIRLGLKELA 205


>gi|108807436|ref|YP_651352.1| Holliday junction DNA helicase RuvA [Yersinia pestis Antiqua]
 gi|108811697|ref|YP_647464.1| Holliday junction DNA helicase RuvA [Yersinia pestis Nepal516]
 gi|145598360|ref|YP_001162436.1| Holliday junction DNA helicase RuvA [Yersinia pestis Pestoides F]
 gi|21959100|gb|AAM85813.1|AE013828_4 Holliday junction helicase subunit B [Yersinia pestis KIM 10]
 gi|45436564|gb|AAS62118.1| Holliday junction helicase subunit B [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51589648|emb|CAH21278.1| Holliday junction DNA helicase [Yersinia pseudotuberculosis IP
           32953]
 gi|108775345|gb|ABG17864.1| Holliday junction DNA helicase subunit RuvA [Yersinia pestis
           Nepal516]
 gi|108779349|gb|ABG13407.1| Holliday junction DNA helicase subunit RuvA [Yersinia pestis
           Antiqua]
 gi|145210056|gb|ABP39463.1| Holliday junction DNA helicase subunit RuvA [Yersinia pestis
           Pestoides F]
          Length = 226

 Score =  177 bits (449), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 4/204 (1%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           IG+++G I       VL++  GV Y +  P+     L ++G    +F +  +R+D   L+
Sbjct: 24  IGRLRGIILEKQPPLVLLETNGVGYEVQLPMTCFYELPELGQEAIIFTQFVVREDAQLLY 83

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF +  +R  F  L  V GVG ++A+ +LS ++A + V ++  ++   + ++PG+  K A
Sbjct: 84  GFNNKQERALFRELIKVNGVGPKLALAILSGMSAQQFVGAVEREDITTLVKLPGVGKKTA 143

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVN-KEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
            R++ E+K +   L+  +  +   ++    +   S       A SALV LGY   +A+  
Sbjct: 144 ERLVVEMKDRFKGLNGDLFNNTGDISLPTASPQTSDADIEAEAASALVALGYKPQEASRL 203

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + K     AD   +IR ALRA
Sbjct: 204 VSKIAK---PGADCETLIRDALRA 224


>gi|315122880|ref|YP_004063369.1| Holliday junction DNA helicase RuvA [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496282|gb|ADR52881.1| Holliday junction DNA helicase RuvA [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 208

 Score =  177 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 166/208 (79%), Positives = 193/208 (92%), Gaps = 1/208 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGKIKGNIEGLYEDYVLIDVQG+CYI+YCPIRTLSCLGKIGDFCTLFVETH+RQDQIRL
Sbjct: 1   MIGKIKGNIEGLYEDYVLIDVQGICYIVYCPIRTLSCLGKIGDFCTLFVETHVRQDQIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLSDL+R+WF+LLQSVQGVGARVAMGVLSRIT  ELV+SIILQN+K++AQIPGI  K+
Sbjct: 61  FGFLSDLERKWFVLLQSVQGVGARVAMGVLSRITPVELVDSIILQNNKILAQIPGIGAKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI-CSMPSFAINAISALVNLGYGQDQATT 179
           ++RIM ELKGKA+SLSS  ++++SC+N E++++  SM S AI+AISALVNLGYGQDQAT 
Sbjct: 121 SNRIMIELKGKAVSLSSSEKKEISCLNGEKSNVCESMSSSAIDAISALVNLGYGQDQATV 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207
           AVVS+LKKEKNI DDSQIIRLALR ++C
Sbjct: 181 AVVSILKKEKNITDDSQIIRLALREMTC 208


>gi|254449000|ref|ZP_05062454.1| Holliday junction DNA helicase RuvA [gamma proteobacterium
           HTCC5015]
 gi|198261394|gb|EDY85685.1| Holliday junction DNA helicase RuvA [gamma proteobacterium
           HTCC5015]
          Length = 205

 Score =  177 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 55/204 (26%), Positives = 105/204 (51%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +      ++L+DV GV Y +  P+ T+  L   G    + + TH+R+D I+L
Sbjct: 1   MIGRLSGTLISKQAPHLLVDVNGVGYEVEAPLSTVFELPAEGQAVVVLIHTHVREDAIQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           F F +D++R++F  L  + GVGA++A+ ++S  +A    + +  +++  + ++PG+  K 
Sbjct: 61  FAFGTDIERRFFRSLIKINGVGAKMALAIMSGASAETFAQWVDQEDTAALTKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ +      +            A   +  S    A++AL  LGY   +A   
Sbjct: 121 AERLVIEMRDRLDKEVFMGAVPSLPKAGVSATASAPMSREDEAVAALEGLGYRAAEARKM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  V +   +     ++IRLAL+ 
Sbjct: 181 VAKVAQ---DDLPTEEMIRLALQQ 201


>gi|114321641|ref|YP_743324.1| Holliday junction DNA helicase RuvA [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|122310889|sp|Q0A5Q3|RUVA_ALHEH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|114228035|gb|ABI57834.1| Holliday junction DNA helicase subunit RuvA [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 208

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 97/207 (46%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +   +   +L+DV GV Y +  P+ T   L       TL+    +R D   L
Sbjct: 1   MIGRLHGTVAERHPPALLLDVGGVGYELEAPMSTFYALPAGDQAVTLWTHLAVRDDGQAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F +L  + GVG ++A+ +LS + A  L   I  ++   + ++PG+  K 
Sbjct: 61  YGFASRAERDLFRVLIRISGVGPKLALALLSGMNAEGLQRCIEREDVATLTRLPGVGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSC---VNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A R++ EL+ +   L       +       ++            +A+SALV LGY   +A
Sbjct: 121 AQRLIVELRDRLDGLLPAASGGVPARTGSGEQLDAPAGPQGSREDAVSALVALGYKPAEA 180

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRA 204
              V +V     N     ++IR AL+A
Sbjct: 181 GRLVNAV--PGANDLPSEELIRRALQA 205


>gi|149375111|ref|ZP_01892883.1| Holliday junction DNA helicase motor protein [Marinobacter algicola
           DG893]
 gi|149360475|gb|EDM48927.1| Holliday junction DNA helicase motor protein [Marinobacter algicola
           DG893]
          Length = 210

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 58/209 (27%), Positives = 100/209 (47%), Gaps = 7/209 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +        L++  G+ Y +  P  T   L + G    L     +R+D   L
Sbjct: 1   MIGRIRGILIEKSPAQALVECAGLGYEVDIPYTTFFNLPETGAELVLHTHFVVREDAQSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S LDR  F LL  V GVG ++A G+LS + A + +  +  +++  + ++PG+  K 
Sbjct: 61  YGFSSRLDRDLFRLLIKVNGVGPKLAAGILSGLDANQFIRCVEARDANALVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSS----VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ E+  +   L               +   A + +       A +AL+ LGY   +
Sbjct: 121 AERLLIEMTDRIGQLEGQFIPASPNATVTSDSANAGVVAGHDPREEAEAALIALGYKPQE 180

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A+ A+  V ++        ++IRLALRA+
Sbjct: 181 ASKAISKVAEE---SMSSQELIRLALRAM 206


>gi|228473784|ref|ZP_04058529.1| holliday junction DNA helicase RuvA [Capnocytophaga gingivalis ATCC
           33624]
 gi|228274805|gb|EEK13628.1| holliday junction DNA helicase RuvA [Capnocytophaga gingivalis ATCC
           33624]
          Length = 196

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 96/205 (46%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +      Y++ID  GV Y +   + T S L        ++    +++D   L
Sbjct: 1   MITHLQGRLVEKTPTYLVIDCNGVGYWVNISLHTFSQLSDT-QQLKIYTYLQIKEDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R+ F LL SV GVGA  A  +LS ++  +L  +I+  + + I  + GI  K 
Sbjct: 60  FGFFDKFEREIFSLLISVSGVGANTARVMLSSLSPAQLQSAIVNSDVRTIQSVKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K + L+      ++            PS    A++AL  LGY +  A   
Sbjct: 120 AQRIILDLKEKMVKLTGDNASLVAA--------SQSPSNKEEALAALEVLGYPRKAAEAV 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +L +        Q+I+ AL+ +
Sbjct: 172 VNKILTQSGQEFSVEQLIKQALKQL 196


>gi|46143844|ref|ZP_00133975.2| COG0632: Holliday junction resolvasome, DNA-binding subunit
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126207771|ref|YP_001052996.1| Holliday junction DNA helicase RuvA [Actinobacillus
           pleuropneumoniae L20]
 gi|303252521|ref|ZP_07338684.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307247270|ref|ZP_07529319.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307249498|ref|ZP_07531486.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307256311|ref|ZP_07538094.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307260744|ref|ZP_07542433.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|166229626|sp|A3MZ05|RUVA_ACTP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|126096563|gb|ABN73391.1| holliday junction ATP-dependent DNA helicase RuvA [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|302648489|gb|EFL78682.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306856243|gb|EFM88397.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306858491|gb|EFM90559.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306865137|gb|EFM97037.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306869583|gb|EFN01371.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 201

 Score =  176 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 66/204 (32%), Positives = 100/204 (49%), Gaps = 5/204 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G I       ++IDVQGV Y +  P+ +   L ++G+  T+F    +R+D   L
Sbjct: 1   MIGRLHGKIIEKQPPEMVIDVQGVGYEVLLPMTSFYSLPQVGEEATIFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++ ++   ++  +    + +IPGI  K 
Sbjct: 61  FGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFANAVENEELAKLTKIPGIGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK   ++     +   V    A     P  A  A  ALV LGY    A   
Sbjct: 121 AERLLVELKGKFKGVAQSDFFEEHSVETIVATHSHDP--ADEARDALVALGYKLADAEKM 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           +  V    K  A   Q+IR AL+A
Sbjct: 179 IKKV---NKAGATSEQLIREALKA 199


>gi|300723091|ref|YP_003712389.1| Holliday junction helicase subunit A [Xenorhabdus nematophila ATCC
           19061]
 gi|297629606|emb|CBJ90209.1| Holliday junction helicase, subunit A [Xenorhabdus nematophila ATCC
           19061]
          Length = 205

 Score =  176 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 105/206 (50%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VL++  GV Y ++ P+     L +IG    LF +  +R+D   L
Sbjct: 1   MIGRLRGTVLEKQPPLVLLETNGVGYEVHMPMTCFYELPEIGQQAILFTQFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V +I  +    + ++PG+  K 
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAIEQEAIASLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA--HICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   L+  +    S +N   A     S       A +ALV+LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNQSSDINLPAAAKQTNSDADIEAEAAAALVSLGYKPQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             V  V+K     AD   +IR ALRA
Sbjct: 181 RMVSKVVK---PGADCETLIREALRA 203


>gi|288939916|ref|YP_003442156.1| Holliday junction DNA helicase RuvA [Allochromatium vinosum DSM
           180]
 gi|288895288|gb|ADC61124.1| Holliday junction DNA helicase RuvA [Allochromatium vinosum DSM
           180]
          Length = 211

 Score =  176 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 60/210 (28%), Positives = 102/210 (48%), Gaps = 9/210 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I   +   +L+DV GV Y +  P+ T   L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLQGRILAKHPPQLLLDVNGVGYELEAPMSTFYGLPAVGETATLLTHLAVREDAWTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+ + DR  F  L  V GVGAR+A+ +LS + A    + +  +++  + ++PGI  K 
Sbjct: 61  YGFIRERDRALFRALIKVTGVGARMALAILSGMDAARFAQCVEQEDATALTRLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDM------SCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           A R++ E++ +   +       +             A + +      +A+SALV LGY  
Sbjct: 121 AERLIIEMRDRLGGVMIAPGAALPSAAGQPASGTTTADVVAEDQALADAVSALVALGYKP 180

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRA 204
             A     +V   +       +IIR ALR+
Sbjct: 181 PDANRMARAV---DDGAKTAEEIIRAALRS 207


>gi|260912903|ref|ZP_05919388.1| crossover junction endoribonuclease subunit A [Pasteurella dagmatis
           ATCC 43325]
 gi|260632893|gb|EEX51059.1| crossover junction endoribonuclease subunit A [Pasteurella dagmatis
           ATCC 43325]
          Length = 204

 Score =  176 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 101/205 (49%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +       +L+DVQGV Y +  P+ +   L +IG   +LF    +R+D   L
Sbjct: 1   MIGHLTGRLVEKQPPEILLDVQGVGYELLLPMTSFYNLPEIGQKTSLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  E V +I  +    + +IPG+  K 
Sbjct: 61  FGFSQKTDRTLFRELIKTNGVGPKLALAILSAMSVNEFVYAIEREELSKLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELKGK   ++      +   +   +  + S  +    A+SALV LGY   +A  
Sbjct: 121 AERLLVELKGKFKDVTQGDFFIESKHLPDVKVSMQSSDAPNDEAVSALVALGYKPVEAEK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  + K         Q+IR AL+A
Sbjct: 181 MVKRITK---PDLSSEQLIREALKA 202


>gi|298370450|ref|ZP_06981766.1| holliday junction DNA helicase RuvA [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298281910|gb|EFI23399.1| holliday junction DNA helicase RuvA [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 193

 Score =  176 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 106/205 (51%), Gaps = 14/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++KG +        +IDV GV Y +   ++T   L   G+   L+ +  +R+D   L
Sbjct: 1   MIGRLKGILVEKNPPQAVIDVNGVGYEVDVSMQTFYRLPATGEAVQLYTQLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L  V G+GA+ A+G+LS ++A EL +++  ++ K ++  PGI  K 
Sbjct: 61  FGFATADERATFRQLVKVSGIGAKTALGILSAMSADELAQAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK           +S V+   A + +      + +S L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKL----------VSAVSDGPAALSAAADGTDDIVSTLLALGYSEREAKAA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V    K      D  + +RLAL+ +
Sbjct: 171 V----KGLPKGTDVGEGVRLALKNL 191


>gi|46912737|emb|CAG19527.1| Putative holliday junction DNA helicase RuvA [Photobacterium
           profundum SS9]
          Length = 228

 Score =  176 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 57/207 (27%), Positives = 97/207 (46%), Gaps = 6/207 (2%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           IG++ G I       VLIDV G+ Y +  P+     L ++G    +     +R+D   L+
Sbjct: 24  IGRLSGTILEKQPPEVLIDVGGIGYEVQMPMSCFYELPEVGQAAVICTHFIVREDAQLLY 83

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF    +R+ F  +    GVG ++ + +LS +TA++ V S+  ++   + +IPG+  K A
Sbjct: 84  GFNKKSERELFREVIKANGVGPKLGLAILSAMTASQFVLSVENEDITTLVKIPGVGKKTA 143

Query: 122 SRIMTELKGKAISLSS---VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
            R++ E++ +               +  +  +    S       A+SAL+ LGY   QA 
Sbjct: 144 ERLVIEMRDRLKGWGEGDLFTPASDAAASNAEIQKYSSARAEDEAVSALIALGYKALQAA 203

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
             V  V+K E        IIR ALR++
Sbjct: 204 KVVSQVVKPE---MSSENIIREALRSM 227


>gi|261855148|ref|YP_003262431.1| Holliday junction DNA helicase RuvA [Halothiobacillus neapolitanus
           c2]
 gi|261835617|gb|ACX95384.1| Holliday junction DNA helicase RuvA [Halothiobacillus neapolitanus
           c2]
          Length = 206

 Score =  176 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 63/203 (31%), Positives = 104/203 (51%), Gaps = 3/203 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++KG +      ++L+DVQGV Y +  P+ TL  L   G   TL + T +R+D   L
Sbjct: 1   MIGRLKGILVNKQPPWILLDVQGVGYEVEVPLSTLFDLPANGQEATLLIHTVVREDAFLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  +++R+ F  L  V GVGA++A+GVLS + A E   +I   +   + ++PG+  K 
Sbjct: 61  YGFSREVERKLFRHLLKVTGVGAKLALGVLSGMNAEEFAGAIARNDIAALIRLPGVGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ +           ++    +   +  +      A+SAL  LGY   ++   
Sbjct: 121 AERLVIEMRDRLAE-GFFDGATLATAAGKMGDVVPLAGADQEAMSALEALGYKPAESQRM 179

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V +V           QIIRLAL+
Sbjct: 180 VKAV--PGAETLPVEQIIRLALK 200


>gi|170726918|ref|YP_001760944.1| Holliday junction DNA helicase RuvA [Shewanella woodyi ATCC 51908]
 gi|229560127|sp|B1KGY0|RUVA_SHEWM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|169812265|gb|ACA86849.1| Holliday junction DNA helicase RuvA [Shewanella woodyi ATCC 51908]
          Length = 205

 Score =  176 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 51/207 (24%), Positives = 102/207 (49%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L++V G+ Y +  P+ +   L  +     ++    +R+D   L
Sbjct: 1   MIGRLRGVLVEKQAPEILLEVAGLGYEVQMPLTSFYELPDLNQEAQIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  +R  F LL    GVG ++ + +LS +TA E V  +   +   + ++PG+  K 
Sbjct: 61  YGFITKQERALFRLLIKTNGVGPKLGLTILSGMTAGEFVACVERDDIATLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQD--MSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E++ K  SL            +         + +   +AI+AL++LGY   QA+
Sbjct: 121 AERLLVEMRDKLKSLLETSAGSEREFMLKSNYTPAPVVNTAEEDAIAALLSLGYKPAQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            AV +  K+         +I+ +L+++
Sbjct: 181 KAVSAAFKE---GMSSEDLIKSSLKSM 204


>gi|226942024|ref|YP_002797098.1| RuvA [Laribacter hongkongensis HLHK9]
 gi|254766965|sp|C1D5S2|RUVA_LARHH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226716951|gb|ACO76089.1| RuvA [Laribacter hongkongensis HLHK9]
          Length = 202

 Score =  176 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 104/206 (50%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +   +   +L+D  GV Y +  P+ T   L  + +   L+    +R+D   L
Sbjct: 1   MIGRLSGTLLEKHPPQILVDAGGVGYEVDVPMSTFCRLPGLNEPVVLWTHMAVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R+ F  L  + GVG ++A+ +LS +   EL  ++  ++ K ++++PGI  K 
Sbjct: 61  FGFAGRAERELFRQLIRISGVGGKLALALLSSLEPDELARAVAQEDIKTLSRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK  SL S     +S      A +        +   AL  LGY   +A  A
Sbjct: 121 AERLILELRGKLGSLPS--ADLLSPAPAAGAALLVENDERADISQALQALGYSAREAEAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + SV     +  D +  IRLAL+A++
Sbjct: 179 LKSV----PDGTDVATGIRLALKALA 200


>gi|332878178|ref|ZP_08445907.1| Holliday junction DNA helicase RuvA [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332683916|gb|EGJ56784.1| Holliday junction DNA helicase RuvA [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 194

 Score =  176 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +       V+ID QGV Y +   + T + L + G+   L+    +++D   L
Sbjct: 1   MITQLQGKLVEKNPTNVVIDCQGVGYFVNISLNTYAALPE-GEAIKLYTYLQIKEDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R+ F+LL SV GVGA  A  +LS +TA ++  +I+      I  + GI  K 
Sbjct: 60  YGFLTKAEREVFVLLISVSGVGAGTARTMLSSLTAAQVRNAIVNGEVATIQSVKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K + L       +S V+               A+SAL  LG+ + QA   
Sbjct: 120 AQRVVLDLKDKMLKLQDFADAPISAVSTH----------KEEALSALEVLGFVRKQAEKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +++   +      II+ AL+++
Sbjct: 170 VDKIVQAAPDSLSVEDIIKQALKSL 194


>gi|90417110|ref|ZP_01225038.1| Holliday junction DNA helicase RuvA [marine gamma proteobacterium
           HTCC2207]
 gi|90331126|gb|EAS46382.1| Holliday junction DNA helicase RuvA [marine gamma proteobacterium
           HTCC2207]
          Length = 199

 Score =  176 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 104/205 (50%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LIDVQGV Y +   + T   +  +G+  TL     +R+D  +L
Sbjct: 1   MIGRLQGKVIEKQAPDLLIDVQGVGYEVLVSLNTFFGVPGVGEITTLHTHFVVREDVQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +RQ F  L  V GVG ++A+ +LS ++A +    +   +   + ++PG+  K 
Sbjct: 61  YGFGTQSERQLFRHLIKVNGVGPKMALAILSGMSANDFAICVHNNDIATLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ K   +      D +          + P  +  A SAL+ LGY    A   
Sbjct: 121 AERLLIEMRDKIGDM------DATAAGSATGAQEAKPDISQEAESALIALGYKPADAAKI 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  V  +  ++ D  ++IRLAL+++
Sbjct: 175 ISRVATE--SVNDAGELIRLALKSM 197


>gi|307245098|ref|ZP_07527191.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307254053|ref|ZP_07535900.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258509|ref|ZP_07540246.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306853987|gb|EFM86199.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306862978|gb|EFM94925.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867413|gb|EFM99264.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 201

 Score =  176 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 66/204 (32%), Positives = 100/204 (49%), Gaps = 5/204 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G I       ++IDVQGV Y +  P+ +   L ++G+  T+F    +R+D   L
Sbjct: 1   MIGRLHGKIIEKQPPEMVIDVQGVGYEVLLPMTSFYSLPQVGEEATIFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++ ++   ++  +    + +IPGI  K 
Sbjct: 61  FGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFANAVEHEELAKLTKIPGIGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK   ++     +   V    A     P  A  A  ALV LGY    A   
Sbjct: 121 AERLLVELKGKFKGVAQSDFFEEHSVETIVATHSHDP--ADEARDALVALGYKLADAEKM 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           +  V    K  A   Q+IR AL+A
Sbjct: 179 IKKV---NKAGATSEQLIREALKA 199


>gi|304393330|ref|ZP_07375258.1| holliday junction DNA helicase RuvA [Ahrensia sp. R2A130]
 gi|303294337|gb|EFL88709.1| holliday junction DNA helicase RuvA [Ahrensia sp. R2A130]
          Length = 205

 Score =  176 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 86/206 (41%), Positives = 131/206 (63%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++   ED+V++DVQGV Y ++C  RT+  L   G+   L +ETH+R+ +I+L
Sbjct: 1   MIGKLKGTVDSFGEDWVILDVQGVGYQVHCSTRTMGTLPAAGEAAQLAIETHVRETEIKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +DL+R WF LLQ+VQGVGARVA+ +L  +T  E+  +I LQ+   +A+ PG+  K+
Sbjct: 61  YGFTADLERNWFRLLQNVQGVGARVALAILGTLTPGEIASAIALQDKATVARAPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK KA +LS      +    +++    +  S   +A+SAL NLGY   QA+ A
Sbjct: 121 AQRIVAELKDKAPALSGDATGTIGL--QQELGAGAASSAVQDAVSALTNLGYSSQQASAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V   L K  + A  + +IR+ L+ +S
Sbjct: 179 VKLALDKAGDDAPSATLIRMGLKELS 204


>gi|212635161|ref|YP_002311686.1| Holliday junction DNA helicase RuvA [Shewanella piezotolerans WP3]
 gi|226725447|sp|B8CNY0|RUVA_SHEPW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|212556645|gb|ACJ29099.1| DNA recombination protein, RuvA [Shewanella piezotolerans WP3]
          Length = 205

 Score =  176 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 66/207 (31%), Positives = 109/207 (52%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +       VLIDV GV Y I  P+ +   L +IG    +F    +R+D   L
Sbjct: 1   MIGRIRGLLVEKQAPEVLIDVSGVGYEIQMPLTSFYELPEIGLEAVVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+S  +R  F LL    GVG ++A+ +LS +TA E V  +   +   + ++PG+  K 
Sbjct: 61  YGFISKQERALFRLLIKTNGVGPKLALTILSGMTAGEFVACVERDDIATLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E++ K  SL  +SV  +    +           +   +AI+AL++LGY   QA+
Sbjct: 121 AERLLVEMRDKLKSLMEASVGSEREFMLQSNYTAPVVANTAEEDAIAALLSLGYKPAQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            AV +V     +  D   +I+ AL+++
Sbjct: 181 KAVSAVY---VDGIDSESLIKSALKSM 204


>gi|302671008|ref|YP_003830968.1| holliday junction DNA helicase RuvA [Butyrivibrio proteoclasticus
           B316]
 gi|302395481|gb|ADL34386.1| holliday junction DNA helicase RuvA [Butyrivibrio proteoclasticus
           B316]
          Length = 207

 Score =  176 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 103/206 (50%), Gaps = 1/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E L +   +IDV G+ Y +     T+  +  IG+   L+  T++++D   L
Sbjct: 1   MIAYVNGILENLEDGNAVIDVNGIGYNVNISGSTMDRMPGIGEMVKLYTYTNVKEDAFTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLS  +   F LL +V G+G +  + +LS +T  +L  +I+  +SK +++ PGI  K 
Sbjct: 61  FGFLSRDELNLFKLLITVNGIGPKGGLAILSVMTPDDLRFAILAGDSKSLSKAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  EL+ K       +    S    +   +    S    A++ALV LGY    A  A
Sbjct: 121 AERITLELRDKLKLSEDELLGGTSASAADIGSMDGDNSARDEAVAALVALGYNSSDAMKA 180

Query: 181 VVSVLKKEKN-IADDSQIIRLALRAI 205
           V  VL   K    D   +++LAL+ +
Sbjct: 181 VRKVLASSKEAGEDTEILLKLALKEM 206


>gi|190149554|ref|YP_001968079.1| holliday junction ATP-dependent DNA helicase RuvA [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303249558|ref|ZP_07335765.1| holliday junction ATP-dependent DNA helicase RuvA [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307251815|ref|ZP_07533717.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307262875|ref|ZP_07544499.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|229470525|sp|B3H0C5|RUVA_ACTP7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189914685|gb|ACE60937.1| holliday junction ATP-dependent DNA helicase RuvA [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302651632|gb|EFL81781.1| holliday junction ATP-dependent DNA helicase RuvA [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306860722|gb|EFM92733.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306871780|gb|EFN03500.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 201

 Score =  176 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 67/204 (32%), Positives = 100/204 (49%), Gaps = 5/204 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G I       ++IDVQGV Y +  P+ +   L +IG+  T+F    +R+D   L
Sbjct: 1   MIGRLHGKIIEKQPPEMVIDVQGVGYEVLLPMTSFYSLPQIGEEATIFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++ ++   ++  +    + +IPGI  K 
Sbjct: 61  FGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFANAVEHEELAKLTKIPGIGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK   ++     +   V    A     P  A  A  ALV LGY    A   
Sbjct: 121 AERLLVELKGKFKGVAQSDFFEEHSVETIVATHSHDP--ADEARDALVALGYKLADAEKM 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           +  V    K  A   Q+IR AL+A
Sbjct: 179 IKKV---NKAGATSEQLIREALKA 199


>gi|88800180|ref|ZP_01115748.1| Holliday junction DNA helicase motor protein [Reinekea sp. MED297]
 gi|88777026|gb|EAR08233.1| Holliday junction DNA helicase motor protein [Reinekea sp. MED297]
          Length = 201

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 64/205 (31%), Positives = 103/205 (50%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +       +L+DV G+ Y I CP+ T+  L   G+  TL     +R+D   L
Sbjct: 1   MIGRIQGTLLENKAPELLVDVHGLGYEIQCPLSTIFALPATGEIVTLHTHLAIREDAHVL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  + GVG ++A+ +LS +     ++SI  Q+   + +IPG+  K 
Sbjct: 61  YGFATQKERTLFRTLIKISGVGPKLALAILSGMETNRFIQSIQDQDPGALVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K K   L S    ++    +      S      +A  AL+ LGY   QA+ A
Sbjct: 121 AERLIVEMKDKLAQLGSQ-GAELITPMEALVEKNSRTDALQDAEGALIALGYKPTQASKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +V     +      IIR AL+A+
Sbjct: 180 VSNVAA---DGMSSEDIIRAALKAM 201


>gi|56477680|ref|YP_159269.1| Holliday junction DNA helicase RuvA [Aromatoleum aromaticum EbN1]
 gi|81357290|sp|Q5P2U6|RUVA_AZOSE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|56313723|emb|CAI08368.1| Holliday junction DNA helicase [Aromatoleum aromaticum EbN1]
          Length = 199

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 99/206 (48%), Gaps = 9/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       +++D  GV Y I  P+ T   L   G+  +LF    +R+D   L
Sbjct: 1   MIGRITGILLEKNPPQIVVDTHGVGYEIDVPMSTFYGLPATGESLSLFTHLAIREDGHFL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L  V G+GAR A+ VLS ++ ++L +++ LQ +  + +IPGI  K 
Sbjct: 61  YGFASADERAAFRQLLKVSGIGARTALSVLSGLSVSDLAQAVALQETGRLVKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K               +              + ++AL+ LGY   +A +A
Sbjct: 121 AERLLLELRDKLGR-----ALPGFGASTVPGAAAQPADSRSDILNALLALGYSDKEAQSA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + ++          S  IR AL+ +S
Sbjct: 176 LKAI----PPETGVSDGIRQALKLLS 197


>gi|149910565|ref|ZP_01899204.1| Holliday junction DNA helicase motor protein [Moritella sp. PE36]
 gi|149806408|gb|EDM66381.1| Holliday junction DNA helicase motor protein [Moritella sp. PE36]
          Length = 206

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 98/205 (47%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L+DV GV Y I  P+     LG +     ++    +R+D   L
Sbjct: 1   MIGRLRGTLLEKQPPEILLDVNGVGYEIKLPMSCFYELGDVDKEVIVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + ++R  F  L  V GVG ++ + +LS +TA +    +   +   + ++PG+  K 
Sbjct: 61  YGFNNKMERLMFRELIKVNGVGPKLGLAILSGMTANQFAHCVEHDDINSLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E++ +  +  +  +    +   + Q +  +  +    A  AL+ LGY   Q   
Sbjct: 121 AERLLVEMRDRLKNWVTQDLFTPEADKAQLQGYGNTASNAIEEAEEALIGLGYKPAQVAK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +  V +         +IIRL+LRA
Sbjct: 181 MIKQVAQ---PSMSCEEIIRLSLRA 202


>gi|331007236|ref|ZP_08330443.1| Holliday junction DNA helicase RuvA [gamma proteobacterium
           IMCC1989]
 gi|330418952|gb|EGG93411.1| Holliday junction DNA helicase RuvA [gamma proteobacterium
           IMCC1989]
          Length = 207

 Score =  174 bits (442), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 101/205 (49%), Gaps = 2/205 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +      Y+LIDV GV Y +  P+ +   L   G+   L     + ++  +L
Sbjct: 1   MIGRLSGVLIEKQAPYLLIDVAGVGYEVQAPMTSFYPLPVTGEKVILHTHLSVSENAHQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           F F +  +R+ F  L  V GVG ++A+ +LS +   E V+ +   N   + ++PG+  K 
Sbjct: 61  FAFYTLEERRLFRTLIKVSGVGPKMALAILSGMPVNEFVQCVKGDNVAALVRVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC-SMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +   L+       + VN E A       +   +A SAL+ LGY    A  
Sbjct: 121 AERLIIEVKDRLGDLAEWESGGAANVNAESATPELLSNAVVADAESALIALGYKPTVAAQ 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            + +  K E ++     +IRLAL++
Sbjct: 181 MISAAQKIE-SVTSSEALIRLALKS 204


>gi|145632564|ref|ZP_01788298.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae 3655]
 gi|229845014|ref|ZP_04465151.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae 6P18H1]
 gi|144986759|gb|EDJ93311.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae 3655]
 gi|229812148|gb|EEP47840.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae 6P18H1]
          Length = 204

 Score =  174 bits (442), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 65/204 (31%), Positives = 104/204 (50%), Gaps = 4/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L++VQGV Y +  P+ +   L +IG   TLF    +R+D   L
Sbjct: 1   MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHFVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  +   +I  +    + +IPG+  K 
Sbjct: 61  FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELKGK   +  S    + + +    +   S+ + +  AISAL+ LGY   +A  
Sbjct: 121 AERLLVELKGKFKGVKQSDFFVESTHIPSVPSIEPSVENSSDEAISALIALGYKPSEAEK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
            V  V K E       Q+IR AL+
Sbjct: 181 MVKRVAKPE---LTSEQVIREALK 201


>gi|157375170|ref|YP_001473770.1| Holliday junction DNA helicase RuvA [Shewanella sediminis HAW-EB3]
 gi|189045772|sp|A8FUW9|RUVA_SHESH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|157317544|gb|ABV36642.1| Holliday junction DNA helicase RuvA [Shewanella sediminis HAW-EB3]
          Length = 205

 Score =  174 bits (442), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 108/207 (52%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L++VQG+ Y +  P+ +   L ++     ++    +R+D   L
Sbjct: 1   MIGRLRGLLVEKQAPEILLEVQGLGYEVQMPLTSFYELPELNQEAIVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  +R  F LL    GVG ++A+ +LS +TA+E V  +   +   + ++PG+  K 
Sbjct: 61  YGFITKQERALFRLLIKTNGVGPKLALTILSGMTASEFVACVERDDIATLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQD--MSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E++ K  SL            +         + +   +AI+AL++LGY   QA+
Sbjct: 121 AERLLVEMRDKLKSLMEASAGSEREFMLKSNYTPAPVINTAEEDAIAALLSLGYKPAQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            AV +V +   +  D   +I+ +L+++
Sbjct: 181 KAVSAVYQ---DGMDSETLIKSSLKSM 204


>gi|37526027|ref|NP_929371.1| Holliday junction DNA helicase motor protein [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|44888380|sp|Q7N548|RUVA_PHOLL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|36785457|emb|CAE14404.1| Holliday junction DNA helicase [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 205

 Score =  174 bits (442), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 100/206 (48%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VL++  GV Y ++ P+     L   G    LF    +R+D   L
Sbjct: 1   MIGRLRGIVLEKQPPLVLLETNGVGYEVHMPMTCFYELPDAGQEAVLFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V +I  +    + ++PG+  K 
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAIEREAIVSLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN--KEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   L+  +    S +N         S       A +ALV+LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNQSSDINLPATAKQTTSDADSEAEAAAALVSLGYKPQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             V  + K     AD   +IR ALRA
Sbjct: 181 RMVSKIAK---PGADCETLIREALRA 203


>gi|326795234|ref|YP_004313054.1| Holliday junction ATP-dependent DNA helicase ruvA [Marinomonas
           mediterranea MMB-1]
 gi|326545998|gb|ADZ91218.1| Holliday junction ATP-dependent DNA helicase ruvA [Marinomonas
           mediterranea MMB-1]
          Length = 199

 Score =  174 bits (442), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 108/205 (52%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +I G +       +L+DV G+ Y +Y  + T+  L  IG+   L     +++D   L
Sbjct: 1   MISRIVGTLIEKMPPELLVDVNGIGYEVYASMTTIYDLASIGETVVLHTHLQVKEDSHTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F +L  V G+G ++A+ +LS ++ +EL+E++   N   + +IPG+  K 
Sbjct: 61  YGFHSKDERAVFRVLIKVNGIGPKMALAILSSMSTSELIENVQESNVDALVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K   L    +QD+    K    + + P     A +ALV LGY   +A+ A
Sbjct: 121 AERLIIELRDK---LGQAAKQDLFSTPKVLKQVQADP--RQEAEAALVALGYKPQEASKA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V +   + +D   II+ AL+ +
Sbjct: 176 VAKVPQ---DGSDSETIIKAALKGM 197


>gi|225374901|ref|ZP_03752122.1| hypothetical protein ROSEINA2194_00524 [Roseburia inulinivorans DSM
           16841]
 gi|225213284|gb|EEG95638.1| hypothetical protein ROSEINA2194_00524 [Roseburia inulinivorans DSM
           16841]
          Length = 203

 Score =  174 bits (442), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 106/206 (51%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +E   EDY++++  G+ Y I+   +T   L  +G+   ++   H+R+D + L
Sbjct: 1   MYAYIKGTLEETGEDYIVVEAGGIGYQIFTTGQTFQYLPSMGEEVKVYTYLHVREDAMIL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  D   F LL  V G+G + A+ +LS +T  +L  +++  ++K IA+ PG+  K 
Sbjct: 61  FGFLTKDDLFVFRLLLGVSGIGPKGALAILSVMTTDDLRFAVLGDDAKAIAKAPGVGAKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K     +  Q+     N  Q            AI ALV LGY   +A  A
Sbjct: 121 AQRLILELKDKLSLEDAFEQKLAKNDNPVQNKA---KGAKNEAIEALVALGYSSSEALKA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +  +  +  D   I++ AL+ ++
Sbjct: 178 LNGI--EITDDTDVEDILKAALKNMA 201


>gi|296313720|ref|ZP_06863661.1| holliday junction DNA helicase RuvA [Neisseria polysaccharea ATCC
           43768]
 gi|296839643|gb|EFH23581.1| holliday junction DNA helicase RuvA [Neisseria polysaccharea ATCC
           43768]
          Length = 194

 Score =  174 bits (441), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 103/205 (50%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL +++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK ++           V        S      + +S L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLVA---------HTVTDGLFAAPSENDETNDIVSTLLALGYSEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V        D  + +RLAL+ +
Sbjct: 172 VKGV----PKGTDVGEGVRLALKNL 192


>gi|240949538|ref|ZP_04753878.1| Holliday junction DNA helicase RuvA [Actinobacillus minor NM305]
 gi|240296111|gb|EER46772.1| Holliday junction DNA helicase RuvA [Actinobacillus minor NM305]
          Length = 200

 Score =  174 bits (441), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 65/203 (32%), Positives = 100/203 (49%), Gaps = 6/203 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G I       +L+DVQGV Y +  P+ +   L +IG+  T+F    +R+D   L
Sbjct: 1   MIGRLHGKIIEKQPPEMLLDVQGVGYELLLPMTSFYNLPQIGEETTIFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++ ++   ++  +    + +IPGI  K 
Sbjct: 61  FGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFANAVENEELAKLTKIPGIGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK   LS   Q D+      +  + S    +  A  AL+ LGY    A   
Sbjct: 121 AERLLVELKGKFKGLS---QTDLFIEQPHETIMASSVEPSDEARDALIALGYKPADAEKM 177

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           +  V       A   Q+IR AL+
Sbjct: 178 IKKV---NLVGATSEQLIREALK 197


>gi|86574402|gb|ABD08959.1| Holliday junction DNA helicase subunit RuvA [Rhodopseudomonas
           palustris HaA2]
          Length = 222

 Score =  174 bits (441), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 90/206 (43%), Positives = 131/206 (63%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   EDYV++DV GV Y ++C  RTL  L   G+   L +ET++R+DQI+L
Sbjct: 18  MIGKLKGIIDSYGEDYVVLDVHGVGYQVHCASRTLQALPAPGEAAVLSIETYVREDQIKL 77

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +D +R+WF LLQ+VQ VGA+VA+ VLS +   +L  +I L++   +A+ PG+  K+
Sbjct: 78  FGFRTDTEREWFRLLQTVQSVGAKVALAVLSTLPPNDLANAIALRDKAAVARTPGVGPKV 137

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK K  +L +V    +        H    P    +AISALVNLGYGQ QA  A
Sbjct: 138 AERIVTELKDKVPALGNVDPAVVHLSGALDDHRAPRP--VTDAISALVNLGYGQPQAAAA 195

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +  +   + A  +Q+I+L L+ +S
Sbjct: 196 IAAASRAAGDDAATAQLIKLGLKELS 221


>gi|189424313|ref|YP_001951490.1| Holliday junction DNA helicase RuvA [Geobacter lovleyi SZ]
 gi|229560034|sp|B3E790|RUVA_GEOLS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189420572|gb|ACD94970.1| Holliday junction DNA helicase RuvA [Geobacter lovleyi SZ]
          Length = 200

 Score =  174 bits (441), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 64/205 (31%), Positives = 100/205 (48%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G I     D+V++DV GV Y +  P  T   L + G   TL + T +R+D I L
Sbjct: 1   MIALLTGQIAHKSPDHVILDVHGVGYRVMIPFSTYYELPEEGQ-ATLHIHTSVREDAILL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++ +F LL SV G+G ++A  +LS I   +L  ++   +   ++ IPGI  K 
Sbjct: 60  YGFRTRTEKSFFQLLISVSGIGPKLARDILSNIQPPQLAAALQQGDLHKLSAIPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK KA  L S        V +         S   +  SALVNLGY   Q    
Sbjct: 120 AERLVLELKDKAGKLDSGSIPAGDAVGR----SLPAGSVLDDVSSALVNLGYKDPQVRKV 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +       A   ++++ AL+ +
Sbjct: 176 LAEL--DCAGSASVEEVLKQALKIL 198


>gi|257465001|ref|ZP_05629372.1| Holliday junction DNA helicase RuvA [Actinobacillus minor 202]
 gi|257450661|gb|EEV24704.1| Holliday junction DNA helicase RuvA [Actinobacillus minor 202]
          Length = 200

 Score =  174 bits (441), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 65/203 (32%), Positives = 100/203 (49%), Gaps = 6/203 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G I       +L+DVQGV Y +  P+ +   L +IG+  T+F    +R+D   L
Sbjct: 1   MIGRLHGKIIEKQPPEMLLDVQGVGYELLLPMTSFYNLPQIGEDTTIFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++ ++   ++  +    + +IPGI  K 
Sbjct: 61  FGFAQKQDRMLFRELIKTNGVGPKLALAILSAMSVSQFASAVENEELAKLTKIPGIGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK   LS   Q D+      +  + S    +  A  AL+ LGY    A   
Sbjct: 121 AERLLVELKGKFKGLS---QTDLFIEQPHETIMTSSAEPSDEARDALIALGYKPADAEKM 177

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           +  V       A   Q+IR AL+
Sbjct: 178 IKKV---NLVGATSEQLIREALK 197


>gi|332290325|ref|YP_004421177.1| Holliday junction DNA helicase RuvA [Gallibacterium anatis UMN179]
 gi|330433221|gb|AEC18280.1| Holliday junction DNA helicase RuvA [Gallibacterium anatis UMN179]
          Length = 202

 Score =  174 bits (440), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 60/204 (29%), Positives = 98/204 (48%), Gaps = 4/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +       +L++V G+ Y +  P+ +   L ++     ++    +R+D   L
Sbjct: 1   MIGHLRGILLEKSPPEILLEVNGIGYEVLLPMTSFYHLPEVNMEAAIYTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++ +E   +I  +    + +IPG+  K 
Sbjct: 61  FGFYHKQDRTLFRELIKTNGVGPKLALAILSAMSVSEFSYAIEREELSKLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK  +        +     +        S   +AISALV LGY   +A   
Sbjct: 121 AERLIVELKGKFKAYQHDDFF-IEQTTTQSGIDTEKVSATDDAISALVALGYKPAEAEKM 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  V K E    D  Q+IR AL++
Sbjct: 180 VKRVAKPEW---DSEQLIREALKS 200


>gi|284007614|emb|CBA73228.1| Holliday junction ATP-dependent DNA helicase [Arsenophonus
           nasoniae]
          Length = 204

 Score =  174 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 101/205 (49%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL+++ GV Y ++ P+     L +IG    L  +  +R+D   L
Sbjct: 1   MIGRLRGTILEKQPPIVLLELNGVGYEVHMPMTCFYELPEIGQEVVLLTQFIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V +I  +    + ++PG+  K 
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAYQFVSAIEQEAIASLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCV-NKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +   L+  + +  +       A   +       A+SAL++LGY    A+ 
Sbjct: 121 AERLVVEMKDRFKGLNGDLFKQSAIDLPGSSAAKQNSHDIEAEAVSALISLGYKPQDASR 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +  V        +   +IR ALRA
Sbjct: 181 MIGRVAN---GATNCEALIREALRA 202


>gi|145636553|ref|ZP_01792221.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae PittHH]
 gi|145270378|gb|EDK10313.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae PittHH]
          Length = 204

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 103/205 (50%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L++VQGV Y +  P+ +   L +IG   TLF    +R+D   L
Sbjct: 1   MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHFVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  +   +I  +    + +IPG+  K 
Sbjct: 61  FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELKGK   +  S    + + +    +      + +  AISAL+ LGY   +A  
Sbjct: 121 AERLLVELKGKFKGIKQSDFFVESTHIRSVPSIEPHTENSSDEAISALIALGYKPSEAEK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  V K E       Q+IR AL+A
Sbjct: 181 MVKRVAKPE---LTSEQVIREALKA 202


>gi|254674127|emb|CBA09911.1| holliday junction DNA helicase [Neisseria meningitidis alpha275]
 gi|325145258|gb|EGC67537.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis
           M01-240013]
          Length = 194

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL +++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK ++           V               + +S L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLVA---------HTVTDGLFAAAPAADETEDIVSTLLALGYSEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V        D  + +RLAL+ +
Sbjct: 172 VKGV----PEGTDVGEGVRLALKNL 192


>gi|192289700|ref|YP_001990305.1| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris
           TIE-1]
 gi|229560122|sp|B3QHS2|RUVA_RHOPT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|192283449|gb|ACE99829.1| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris
           TIE-1]
          Length = 205

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 93/206 (45%), Positives = 133/206 (64%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   EDYV++DVQGV Y ++C  RTL  L   G+  TL +ET++R+DQI+L
Sbjct: 1   MIGKLKGIIDSYGEDYVILDVQGVGYQVHCASRTLQALPSPGEAATLSIETYVREDQIKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +D +R+WF LLQ+VQ VGA+VA+ VLS +   +L  +I L++   +A+ PG+  K+
Sbjct: 61  FGFRTDTEREWFRLLQTVQSVGAKVALAVLSTLPPHDLANAIALRDKAAVARTPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK K  +LS+V    +             P    +AISALVNLGYGQ QA  A
Sbjct: 121 AERIVTELKDKVPALSAVDPAVVKLSG--AIDDNRAPRAVTDAISALVNLGYGQPQAAAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V +  +     A+ +Q+I+L L+ +S
Sbjct: 179 VATASRTAGEDAETAQLIKLGLKELS 204


>gi|162138516|ref|YP_487870.2| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris
           HaA2]
          Length = 205

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 90/206 (43%), Positives = 131/206 (63%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   EDYV++DV GV Y ++C  RTL  L   G+   L +ET++R+DQI+L
Sbjct: 1   MIGKLKGIIDSYGEDYVVLDVHGVGYQVHCASRTLQALPAPGEAAVLSIETYVREDQIKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +D +R+WF LLQ+VQ VGA+VA+ VLS +   +L  +I L++   +A+ PG+  K+
Sbjct: 61  FGFRTDTEREWFRLLQTVQSVGAKVALAVLSTLPPNDLANAIALRDKAAVARTPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK K  +L +V    +        H    P    +AISALVNLGYGQ QA  A
Sbjct: 121 AERIVTELKDKVPALGNVDPAVVHLSGALDDHRAPRP--VTDAISALVNLGYGQPQAAAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +  +   + A  +Q+I+L L+ +S
Sbjct: 179 IAAASRAAGDDAATAQLIKLGLKELS 204


>gi|150397836|ref|YP_001328303.1| Holliday junction DNA helicase RuvA [Sinorhizobium medicae WSM419]
 gi|166200266|sp|A6UCT8|RUVA_SINMW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|150029351|gb|ABR61468.1| Holliday junction DNA helicase RuvA [Sinorhizobium medicae WSM419]
          Length = 205

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 95/206 (46%), Positives = 140/206 (67%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + ED+V++DV GV Y+ +C  RTL+ LG+ G+   LF+ET++R+DQ++L
Sbjct: 1   MIGKLKGTIDEIGEDHVVLDVHGVGYVAHCSARTLAKLGRAGEAAVLFIETYVREDQLKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLS L+R+WF LLQSVQGVG++VA+ VLS +T  EL  +I LQ+   I++ PG+  K+
Sbjct: 61  FGFLSALEREWFRLLQSVQGVGSKVALAVLSTLTPGELANAIALQDKTSISRAPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA +    +   +    +    + + P    +A+SAL NLGY +DQA  A
Sbjct: 121 AVRIVTELKNKAPAFVGEMAPSIGLKQELGEGVAAAP--VSDAVSALTNLGYSRDQAANA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + LK     AD +++IRL L+ +S
Sbjct: 179 VAAALKNGGEGADSARLIRLGLKELS 204


>gi|311694932|gb|ADP97805.1| Holliday junction ATP-dependent DNA helicase RuvA [marine bacterium
           HP15]
          Length = 209

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 60/209 (28%), Positives = 98/209 (46%), Gaps = 7/209 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +        L++  G+ Y +  P  T   L + GD  TL     +R+D   L
Sbjct: 1   MIGRIRGILVEKAPGQALVECAGLGYEVDIPYTTFFHLPETGDEVTLHTHFAVREDAQSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S LDR  F LL  V GVG ++A+G+LS + A + +  +  ++S  + ++PG+  K 
Sbjct: 61  YGFASSLDRDLFRLLIKVNGVGPKLAVGILSGLDAQQFIRCVENRDSASLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSS----VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ E+  +   L         +               P     A +AL+ LGY   +
Sbjct: 121 AERLLIEMADRIGQLEGQFVPTSPEATGVGQPGGQGPAGGPVATEEAEAALIALGYKPQE 180

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A  A+  V ++         +IRLALR +
Sbjct: 181 AAKAISKVAEE---GMSSETLIRLALRNM 206


>gi|304312895|ref|YP_003812493.1| Holliday junction resolvasome DNA-binding subunit [gamma
           proteobacterium HdN1]
 gi|301798628|emb|CBL46860.1| Holliday junction resolvasome DNA-binding subunit [gamma
           proteobacterium HdN1]
          Length = 208

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 53/207 (25%), Positives = 90/207 (43%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +       ++IDV GV Y +  P+ T   L  +G+   L     +R+D   L
Sbjct: 1   MITHLSGTLRHKQAPQLVIDVSGVGYELDAPMTTFYRLPSLGERVELLTHLVVREDAHVL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L  V G+G +VA+ +LS I   + V  I   +   + +IPG+  K 
Sbjct: 61  FGFATQEERSLFRALIKVTGIGPKVALAILSGIEVPQFVRCINCHDVSALIRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN--KEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E++ +           +   +   E             A +AL+ LGY   +A 
Sbjct: 121 AERLIVEMQDRLPRTLETSLTALQEESLLGENTRPQQAHRPLDEAEAALIALGYKPQEAA 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
             + ++           Q+IR AL+ +
Sbjct: 181 RCLNAL---NTEGLSSEQLIRQALKNM 204


>gi|39934175|ref|NP_946451.1| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris
           CGA009]
 gi|81563776|sp|Q6NAT0|RUVA_RHOPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|39648023|emb|CAE26543.1| RuvA; Holliday branch migration protein [Rhodopseudomonas palustris
           CGA009]
          Length = 205

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 93/206 (45%), Positives = 133/206 (64%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   EDYV++DVQGV Y ++C  RTL  L   G+  TL +ET++R+DQI+L
Sbjct: 1   MIGKLKGIIDSYGEDYVILDVQGVGYQVHCASRTLQALPSPGEAATLSIETYVREDQIKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +D +R+WF LLQ+VQ VGA+VA+ VLS +   +L  +I L++   +A+ PG+  K+
Sbjct: 61  FGFRTDTEREWFRLLQTVQSVGAKVALAVLSTLPPHDLANAIALRDKAAVARTPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK K  +LS+V    +             P    +AISALVNLGYGQ QA  A
Sbjct: 121 AERIVTELKDKVPALSAVDPAVVKLSG--AIDDNRAPRAVADAISALVNLGYGQPQAAAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V +  +     A+ +Q+I+L L+ +S
Sbjct: 179 VATASRTAGEDAETAQLIKLGLKELS 204


>gi|118581082|ref|YP_902332.1| Holliday junction DNA helicase RuvA [Pelobacter propionicus DSM
           2379]
 gi|166230581|sp|A1ASF4|RUVA_PELPD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|118503792|gb|ABL00275.1| Holliday junction DNA helicase subunit RuvA [Pelobacter propionicus
           DSM 2379]
          Length = 198

 Score =  173 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 108/205 (52%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G I     D++++DV GV Y +  P  T   L + G   +L + T +R+D I+L
Sbjct: 1   MIALLTGQIAQKSPDHIILDVNGVGYRVQIPFSTYYDLPEEG-TVSLHIHTSVREDAIQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + L++ +F LL SV GVG R+A  +LS I   +L +++   + ++++ +PGI  K 
Sbjct: 60  YGFRTSLEKSFFQLLLSVSGVGPRLARDILSNIQPAQLAQALGQGDIRMLSAVPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K   L      D+S V   +           + +SAL+NLGY + Q    
Sbjct: 120 AERLVLELKEKVGKL------DLSSVVVPEPRQMPEDDLLEDVVSALLNLGYKEPQVRKV 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +     + A    +++ AL+++
Sbjct: 174 LAGL--NPGSDASLEGVLKQALKSL 196


>gi|158422139|ref|YP_001523431.1| Holliday junction DNA helicase RuvA [Azorhizobium caulinodans ORS
           571]
 gi|172048036|sp|A8IM99|RUVA_AZOC5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|158329028|dbj|BAF86513.1| DNA recombination protein [Azorhizobium caulinodans ORS 571]
          Length = 206

 Score =  173 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 80/206 (38%), Positives = 135/206 (65%), Gaps = 1/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++   ED++++DV GV Y+++C  RTL  L ++G+   LF+ETH+R+DQIRL
Sbjct: 1   MIGKLKGTVDSFGEDHLILDVHGVGYLVHCSGRTLQALPRVGEAAVLFIETHVREDQIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+++ +R+WF LLQ +QG+G + A+ +LS +  ++L +++ L +   +A+  G+  ++
Sbjct: 61  FGFVTEAEREWFRLLQGIQGIGTKTALAILSTLKPSDLAQAVALGDKTALARANGVGPRV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+TELK K  + ++            +A   +  + A +A+SALVNLGYGQ QA TA
Sbjct: 121 ATRIVTELKDKVPAFTAADPGLARLAADVEATEAAGGALA-DAVSALVNLGYGQAQAHTA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +  +K    A    +IRL L+ ++
Sbjct: 180 IAAAGRKAGEDATTETLIRLGLKELA 205


>gi|161510997|ref|YP_087904.2| Holliday junction DNA helicase motor protein [Mannheimia
           succiniciproducens MBEL55E]
 gi|88941980|sp|Q65UP1|RUVA_MANSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
          Length = 204

 Score =  173 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 98/205 (47%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L+DV G+ Y +  P+ +   L +IG    LF    +R+D   L
Sbjct: 1   MIGRLQGILLEKQPPEILLDVHGIGYELLLPMTSFYNLPEIGQETVLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  DR  F  L    GVG ++A+ +LS ++  E   +I  +    + +IPG+  K 
Sbjct: 61  FGFSAKTDRTLFRELIKTNGVGPKLALAILSAMSVNEFAYAIEHEELSKLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELKGK   +       + S V        S    A  A++AL+ LGY    A  
Sbjct: 121 AERLLVELKGKFKGIKQPDFFVESSHVGAVDPVTTSPEVPAEEAVAALMALGYKASDAEK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  + K         Q+IR AL+A
Sbjct: 181 MVKRIAKPH---LTSEQLIREALKA 202


>gi|86134376|ref|ZP_01052958.1| Holliday junction ATP-dependent DNA helicase RuvA [Polaribacter sp.
           MED152]
 gi|85821239|gb|EAQ42386.1| Holliday junction ATP-dependent DNA helicase RuvA [Polaribacter sp.
           MED152]
          Length = 193

 Score =  173 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 106/205 (51%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +       V+ID  GV Y+++  + T S L +  +   L+    +R D   L
Sbjct: 1   MITQVRGRLVEKSPTEVVIDCNGVGYLLHISLNTFSGLPE-DENVVLYTHLSIRDDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF++  +R+ F LL SV GVG  +A  + S +T+ E+ ++I  +N  VI  + GI  K 
Sbjct: 60  FGFINKTEREVFKLLISVSGVGPSIARTMCSSMTSDEIQQAIASENVAVIQSVKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K +   ++ +  +S  N               A+SAL  LG+ + Q+   
Sbjct: 120 AQRVIVDLKDKILKTFNIDEVSVSASNTN----------KDEALSALEVLGFNRKQSDKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +VLK   + A    II+LAL+ +
Sbjct: 170 VNTVLKANPD-ASVENIIKLALKNL 193


>gi|222055417|ref|YP_002537779.1| Holliday junction DNA helicase RuvA [Geobacter sp. FRC-32]
 gi|254766963|sp|B9LZC5|RUVA_GEOSF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|221564706|gb|ACM20678.1| Holliday junction DNA helicase RuvA [Geobacter sp. FRC-32]
          Length = 199

 Score =  173 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +     D++++DV GV Y +  P  T   L + G   +L + TH+++D I L
Sbjct: 1   MIALLTGKLAHKSPDFIILDVNGVGYRVQIPFSTYYALPEGGSSVSLNIFTHVKEDAINL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +++ F LL SV G+G ++  G+LS I A  L +++I  +   +A IPGI  K 
Sbjct: 61  YGFRTMEEKEMFQLLISVSGIGPKLGNGILSNIEAQNLSDALIRGDLARLATIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K   L          + ++ A   +      + +SALVNLGY +      
Sbjct: 121 AERLVLELREKVKKLGH------GPLQQDVAPADAHNDMRDDVVSALVNLGYKEAVVQKT 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +       A    +++ AL+ +
Sbjct: 175 VDEI--GVAADATVESLLKQALKKL 197


>gi|261378519|ref|ZP_05983092.1| holliday junction DNA helicase RuvA [Neisseria cinerea ATCC 14685]
 gi|269145069|gb|EEZ71487.1| holliday junction DNA helicase RuvA [Neisseria cinerea ATCC 14685]
          Length = 194

 Score =  173 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   +F +  +R+D   L
Sbjct: 1   MISRLTGKLVEKTPPQIVIDVNGVGYEADVSMQTFYNLPPLGETVQVFTQLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL +++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK I            V        S      + +S L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLI---------THTVTDGLFATPSENDETNDIVSTLLALGYSEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +        D  + +RLAL+ +
Sbjct: 172 VKGI----PKGTDVGEGVRLALKNL 192


>gi|52306819|gb|AAU37319.1| RuvA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 215

 Score =  173 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 98/205 (47%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L+DV G+ Y +  P+ +   L +IG    LF    +R+D   L
Sbjct: 12  MIGRLQGILLEKQPPEILLDVHGIGYELLLPMTSFYNLPEIGQETVLFTHLVVREDAHLL 71

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  DR  F  L    GVG ++A+ +LS ++  E   +I  +    + +IPG+  K 
Sbjct: 72  FGFSAKTDRTLFRELIKTNGVGPKLALAILSAMSVNEFAYAIEHEELSKLVKIPGVGKKT 131

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELKGK   +       + S V        S    A  A++AL+ LGY    A  
Sbjct: 132 AERLLVELKGKFKGIKQPDFFVESSHVGAVDPVTTSPEVPAEEAVAALMALGYKASDAEK 191

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  + K         Q+IR AL+A
Sbjct: 192 MVKRIAKPH---LTSEQLIREALKA 213


>gi|316932642|ref|YP_004107624.1| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris
           DX-1]
 gi|315600356|gb|ADU42891.1| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris
           DX-1]
          Length = 205

 Score =  173 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 92/206 (44%), Positives = 132/206 (64%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   EDYV++DV GV Y ++C  RTL  L   G+  TL +ET++R+DQI+L
Sbjct: 1   MIGKLKGVIDSYGEDYVILDVHGVGYQVHCASRTLQALPSPGEAATLSIETYVREDQIKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +D +R+WF LLQ+VQ VGA+VA+ VLS +   +L  +I L++   +A+ PG+  K+
Sbjct: 61  FGFRTDTEREWFRLLQTVQSVGAKVALAVLSTLPPHDLANAIALRDKAAVARTPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK K  +LS+V    +        +    P    +AISALVNLGYGQ QA  A
Sbjct: 121 AERIVTELKDKVPALSNVDPAVVHLSGAIDDNTA--PRAVADAISALVNLGYGQPQAAAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V +  +     A  +Q+I+L L+ +S
Sbjct: 179 VAAASRSAGEDAATAQLIKLGLKELS 204


>gi|325205349|gb|ADZ00802.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis
           M04-240196]
          Length = 194

 Score =  173 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL +++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK ++           V               + +S L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLVA---------HTVTDGLFAAAPAADETEDIVSTLLALGYSEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V        D  + +RLAL+ +
Sbjct: 172 VKGV----PKGTDVGEGVRLALKNL 192


>gi|325135068|gb|EGC57696.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis M13399]
          Length = 194

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL  ++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK ++           V               + +S L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLVA---------HAVTDGLFAAAPAADETEDIVSTLLALGYSEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V        D  + +RLAL+ +
Sbjct: 172 VKGV----PEGTDVGEGVRLALKNL 192


>gi|322514922|ref|ZP_08067937.1| crossover junction ATP-dependent DNA helicase RuvA [Actinobacillus
           ureae ATCC 25976]
 gi|322119110|gb|EFX91264.1| crossover junction ATP-dependent DNA helicase RuvA [Actinobacillus
           ureae ATCC 25976]
          Length = 201

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 65/204 (31%), Positives = 99/204 (48%), Gaps = 5/204 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G I       ++IDVQGV Y +  P+ +   L ++G+  T+F    +R+D   L
Sbjct: 1   MIGRLHGKIIEKQPPEMVIDVQGVGYEVLLPMTSFYSLPQVGEEATIFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++ ++   ++  +    + +IP I  K 
Sbjct: 61  FGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFANAVENEELAKLTKIPSIGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK   ++     +   V    A     P  A  A  ALV LGY    A   
Sbjct: 121 AERLLVELKGKFKGVAQSDFFEEHSVEMIVATHSHDP--ADEAQDALVALGYKLADADKM 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           +  V    K  A   Q+IR AL+A
Sbjct: 179 IKKV---NKAGATSEQLIREALKA 199


>gi|260467057|ref|ZP_05813237.1| Holliday junction DNA helicase RuvA [Mesorhizobium opportunistum
           WSM2075]
 gi|259029166|gb|EEW30462.1| Holliday junction DNA helicase RuvA [Mesorhizobium opportunistum
           WSM2075]
          Length = 206

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 84/207 (40%), Positives = 132/207 (63%), Gaps = 3/207 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++ + ED+ L+D+ GV Y+ YC  RTL+ L   G+   LF+ET++R+D +RL
Sbjct: 1   MIGKLKGTLDEIDEDHCLVDIHGVGYVAYCSARTLAALPSPGEAVVLFIETYVREDMLRL 60

Query: 61  FGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +GF S L+R+WF LL  +V GVGA+VA+ +LS +T  +L  +I L++  ++++ PG+  K
Sbjct: 61  YGFQSQLEREWFRLLMNNVPGVGAKVALAILSTLTPADLANAIALRDIAMVSRAPGVGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           +A RI+TELK KA + +      +    +    +   P    +A+SALVNLGY +D A  
Sbjct: 121 VAERIVTELKNKAPAYAGAASGTIGLKQELGDGVAPAP--ITDAVSALVNLGYSRDTAAN 178

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV + LK     AD S++IR  L+ ++
Sbjct: 179 AVSAALKTAGEDADASKLIRFGLKELA 205


>gi|15676189|ref|NP_273321.1| Holliday junction DNA helicase motor protein [Neisseria
           meningitidis MC58]
 gi|20455266|sp|Q9K1A2|RUVA_NEIMB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|7225489|gb|AAF40719.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis MC58]
 gi|261391796|emb|CAX49251.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis 8013]
 gi|316985194|gb|EFV64146.1| holliday junction DNA helicase RuvA [Neisseria meningitidis H44/76]
 gi|325137090|gb|EGC59686.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis M0579]
 gi|325139154|gb|EGC61700.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis
           ES14902]
 gi|325141101|gb|EGC63604.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis CU385]
 gi|325199468|gb|ADY94923.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis H44/76]
 gi|325202908|gb|ADY98362.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis
           M01-240149]
 gi|325207293|gb|ADZ02745.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis
           NZ-05/33]
          Length = 194

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL  ++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK ++           V               + +S L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLVA---------HTVTDGLFAAAPAADETEDIVSTLLALGYSEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V        D  + +RLAL+ +
Sbjct: 172 VKGV----PEGTDVGEGVRLALKNL 192


>gi|152996211|ref|YP_001341046.1| Holliday junction DNA helicase RuvA [Marinomonas sp. MWYL1]
 gi|189045756|sp|A6VXD2|RUVA_MARMS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|150837135|gb|ABR71111.1| Holliday junction DNA helicase RuvA [Marinomonas sp. MWYL1]
          Length = 200

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 100/205 (48%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       +++DV G+ Y +   + T+  L +IG   TLF    +++D   L
Sbjct: 1   MIGRIVGTLIEKTPPELMVDVNGIGYEVSASMTTIYDLPQIGGQVTLFTHLLVKEDSHTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   +R  F +L  V G+G ++A+ +LS +++ EL+ ++   +   + +IPG+  K 
Sbjct: 61  YGFIDKNERALFRVLIKVNGIGPKMALAILSSMSSEELITNVQESDVTALTRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K               +               A +AL++LGY   +A  A
Sbjct: 121 AERLIIELRDKLGQ-----AAKTDLFSAPAVLRQVQADPRQEAEAALISLGYKPQEAAKA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  V     + A+   +I+ AL+ +
Sbjct: 176 IAGVP---VDAANSEDVIKAALKGM 197


>gi|113460415|ref|YP_718477.1| Holliday junction DNA helicase RuvA [Haemophilus somnus 129PT]
 gi|170717663|ref|YP_001783495.1| Holliday junction DNA helicase RuvA [Haemophilus somnus 2336]
 gi|123131938|sp|Q0I1M4|RUVA_HAES1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189045755|sp|B0UVK3|RUVA_HAES2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|112822458|gb|ABI24547.1| Holliday junction DNA helicase subunit RuvA [Haemophilus somnus
           129PT]
 gi|168825792|gb|ACA31163.1| Holliday junction DNA helicase RuvA [Haemophilus somnus 2336]
          Length = 204

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 67/205 (32%), Positives = 101/205 (49%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L+DVQGV Y +  P+ +   L ++G   TLF    +R+D   L
Sbjct: 1   MIGRVTGILVEKQAPEILLDVQGVGYELLLPMTSFYNLPEVGQETTLFTHFVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  E V +I  +    + +IPG+  K 
Sbjct: 61  FGFSHKQDRSLFRELIKTNGVGPKLALAILSAMSVNEFVYAIEQEELSKLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELKGK   L  +      S +   +            A+SAL+ LGY   +A  
Sbjct: 121 AERLLVELKGKFKGLQQTDFFIKSSHLPGIKCSKLDQSLQLDEAVSALIALGYKPIEAEK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  VLK +       Q+IR AL+A
Sbjct: 181 MVKKVLKAD---LTSEQLIREALKA 202


>gi|161870798|ref|YP_001599971.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis 053442]
 gi|189045759|sp|A9M3B7|RUVA_NEIM0 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|161596351|gb|ABX74011.1| Holliday junction DNA helicase [Neisseria meningitidis 053442]
 gi|308388484|gb|ADO30804.1| Holliday junction DNA helicase [Neisseria meningitidis alpha710]
 gi|325130991|gb|EGC53718.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis
           OX99.30304]
 gi|325131591|gb|EGC54298.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis M6190]
 gi|325143104|gb|EGC65451.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis
           961-5945]
 gi|325143174|gb|EGC65520.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis
           961-5945]
 gi|325197549|gb|ADY93005.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis G2136]
          Length = 194

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL +++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK ++           V               + +S L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLVA---------HTVTDGLFAAAPAADETEDIVSTLLALGYSEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V        D  + +RLAL+ +
Sbjct: 172 VKGV----PEGTDVGEGVRLALKNL 192


>gi|309379780|emb|CBX21556.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 194

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 103/205 (50%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFCNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +RQ F  L  V G+GA+ A+G+LS +TA EL  ++  ++ K ++  PGI  K 
Sbjct: 61  FGFATNEERQTFRQLIKVSGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK ++           V               + +S L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLVA---------HTVTDGLFAAAPAADETEDIVSTLLALGYSEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V       AD  + +RLAL+ +
Sbjct: 172 VKGV----PKGADVGEGVRLALKNL 192


>gi|77163677|ref|YP_342202.1| DNA recombination protein, RuvA [Nitrosococcus oceani ATCC 19707]
 gi|254435109|ref|ZP_05048616.1| Holliday junction DNA helicase RuvA [Nitrosococcus oceani AFC27]
 gi|90135436|sp|Q3JES4|RUVA_NITOC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|76881991|gb|ABA56672.1| Holliday junction DNA helicase subunit RuvA [Nitrosococcus oceani
           ATCC 19707]
 gi|207088220|gb|EDZ65492.1| Holliday junction DNA helicase RuvA [Nitrosococcus oceani AFC27]
          Length = 199

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 102/205 (49%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++L+DVQGV Y +  P+ T   L  +G    L+    +R D   L
Sbjct: 1   MIGRLRGILLEKRAPFLLLDVQGVGYELEAPLSTFYVLPAMGAEVILYTHLVVRDDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           + F S+ +R  F  L  V GVGA++ +G+LS I A      +   ++  + ++PG+  K 
Sbjct: 61  YAFASEKERGLFRSLIRVNGVGAKLGLGILSGIEAESFTRCVQEGDTVSLTRLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ + + +       M    +      S P     A+SALV LGY  ++A+ A
Sbjct: 121 AERLIVEMRDRLLDMPESGVAGM----RPDRVDGSAPGTVAEAVSALVALGYKPNEASRA 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +   +       +IIR AL+ +
Sbjct: 177 VRRL---DTEALTTEEIIRQALQRM 198


>gi|78221965|ref|YP_383712.1| Holliday junction DNA helicase RuvA [Geobacter metallireducens
           GS-15]
 gi|123729330|sp|Q39XN7|RUVA_GEOMG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|78193220|gb|ABB30987.1| Holliday junction DNA helicase subunit RuvA [Geobacter
           metallireducens GS-15]
          Length = 199

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 107/205 (52%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +     D ++IDV GV Y +  P  T   L   G   +L + TH+++D I L
Sbjct: 1   MIARLTGMLAHKSPDAIIIDVNGVGYRVQIPFSTYYELPDEGKTVSLSIYTHVKEDAISL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  ++++F +L SV G+G ++A  +LS I   EL  +I+  N   ++ IPGI  K 
Sbjct: 61  FGFRTVAEKEFFQVLISVSGIGPKMARDILSNIQPDELAGAILQGNLVRLSSIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K   +      D++   KE A   + P  A +  SALVNLGY +      
Sbjct: 121 AERLVLELKEKVRKM------DVAPSTKEAAPSEAPPEVADDVASALVNLGYKEAVVRKV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +  +  + A    ++R AL+ +
Sbjct: 175 LAEMAIE--SGASTEAVLRQALKIL 197


>gi|304413290|ref|ZP_07394763.1| DNA-binding subunit of Holliday junction resolvasome [Candidatus
           Regiella insecticola LSR1]
 gi|304284133|gb|EFL92526.1| DNA-binding subunit of Holliday junction resolvasome [Candidatus
           Regiella insecticola LSR1]
          Length = 202

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 104/204 (50%), Gaps = 4/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y I  PI     L + G    +F +  +R++   L
Sbjct: 1   MIGRLRGIILEKQPPQVLLETHGVGYEIQLPISCFYQLPEAGQEAIIFTQFVVREEAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PG+  K 
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAPQFVHAVEQEEISTLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L+  +  + +      + + ++ + A  A+SAL+ LGY   +A+  
Sbjct: 121 AERLVVEMKDRIKGLNGDLFTNSTAAPLSASLLTTVNNEA-EAVSALITLGYKPQEASRL 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           +  +   E    D   +IR ALRA
Sbjct: 180 INKIATAE---MDCETLIREALRA 200


>gi|75676909|ref|YP_319330.1| Holliday junction DNA helicase motor protein [Nitrobacter
           winogradskyi Nb-255]
 gi|90135442|sp|Q3SP13|RUVA_NITWN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|74421779|gb|ABA05978.1| Holliday junction DNA helicase subunit RuvA [Nitrobacter
           winogradskyi Nb-255]
          Length = 205

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 94/206 (45%), Positives = 132/206 (64%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   EDYV++DV GV Y ++C  RTL  L   G    L +ET++R+DQI+L
Sbjct: 1   MIGKLKGVIDSYGEDYVILDVGGVGYQVHCASRTLQALPSPGQAAVLSIETYVREDQIKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +D +R+WF LLQ+VQGVGARVA+ VL  ++  +L  +I L++   +A+ PGI  K+
Sbjct: 61  FGFRTDHEREWFRLLQTVQGVGARVALAVLGTLSPADLASAIALRDKASVARTPGIGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA S ++V    +             P    +AISALVNLGYGQ QAT A
Sbjct: 121 AERIVTELKDKAPSFANVDPTVVHLAGDLDDQRAPRP--VRDAISALVNLGYGQPQATAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +  +     A+ +Q+IRL L+ +S
Sbjct: 179 IAAASRGAGENAETAQLIRLGLKELS 204


>gi|154246996|ref|YP_001417954.1| Holliday junction DNA helicase RuvA [Xanthobacter autotrophicus
           Py2]
 gi|229560140|sp|A7IJV4|RUVA_XANP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|154161081|gb|ABS68297.1| Holliday junction DNA helicase RuvA [Xanthobacter autotrophicus
           Py2]
          Length = 205

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 87/206 (42%), Positives = 132/206 (64%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++ L ED+V++DV GV Y+++C  RTLS L + G+   LF+ETH+R+DQIRL
Sbjct: 1   MIGKLKGVVDTLEEDHVILDVHGVGYLVHCSGRTLSALPRAGEAAALFIETHVREDQIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R WF LLQ +QG+G + A+ VLS ++A+EL ++I L +   +A+ PG+  ++
Sbjct: 61  FGFSSAAERDWFRLLQGIQGIGTKTALAVLSTLSASELTQAIALGDKTTVARAPGVGPRV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+TELK K    S    + ++          +    A +A+SALVNLGYG  QA  A
Sbjct: 121 ATRIITELKDKMPGFS--ASEPLAAQLGGGGVASAQGGAAADAVSALVNLGYGVPQANAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + + L+     A    +IRL L+ ++
Sbjct: 179 IAAALRGAGEGAKTEVLIRLGLKELA 204


>gi|82703833|ref|YP_413399.1| Holliday junction DNA helicase RuvA [Nitrosospira multiformis ATCC
           25196]
 gi|123740585|sp|Q2Y5G4|RUVA_NITMU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|82411898|gb|ABB76007.1| Holliday junction DNA helicase subunit RuvA [Nitrosospira
           multiformis ATCC 25196]
          Length = 197

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 103/206 (50%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +   +   VL+DVQGV Y I  P+ T   L  +G   TL     +R+D   L
Sbjct: 1   MIGRISGLLLEKFPPLVLVDVQGVGYEIDVPMSTFYNLPAVGTQITLHTHFVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +RQ F  L  + GVGAR A+ +LS ++  +L +++  Q+   + +IPGI  K 
Sbjct: 61  FGFATEGERQAFRQLVKISGVGARTALALLSGLSVADLHQTVSNQDPARLIRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K     S +           A      +   + ++AL++LGY   +A  A
Sbjct: 121 AERLLLELRDKLDLGVSAIPG--------AAGARRPSTMGSDVLNALLSLGYNDREANWA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  +          S  IR AL+ +S
Sbjct: 173 VSQLSVDL----SVSDGIRQALKFLS 194


>gi|224827243|ref|ZP_03700337.1| Holliday junction DNA helicase RuvA [Lutiella nitroferrum 2002]
 gi|224600532|gb|EEG06721.1| Holliday junction DNA helicase RuvA [Lutiella nitroferrum 2002]
          Length = 197

 Score =  172 bits (436), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +++DV GV Y +  P+ T   L  +G+  TL+    +R+D   L
Sbjct: 1   MIGRLTGQLIEKLPPQIVVDVGGVGYEVDVPMSTFYLLPALGEKTTLYTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R+ F  L  V G+GA++A+ +LS ++A EL  ++  ++ K ++ +PGI  K 
Sbjct: 61  FGFASKGERETFRQLIKVGGIGAKIALAILSGLSADELALAVASEDLKRLSSVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK            +          + P    + ++AL+ LGY   +A  A
Sbjct: 121 AERLVLELRGKL-------ATGGAVTTPGGLPFAATPDDKSDIVNALLALGYNDKEAAAA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
                K        S  +RLAL+++
Sbjct: 174 ----TKCLPPEVTVSDGVRLALKSL 194


>gi|325203380|gb|ADY98833.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis
           M01-240355]
          Length = 194

 Score =  172 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL  ++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK ++           V               + +S L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLVA---------HTVTDGLFAAAPAADETEDIVSTLLALGYSEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V        D  + +RLAL+ +
Sbjct: 172 VKGV----PKGTDVGEGVRLALKNL 192


>gi|39996178|ref|NP_952129.1| Holliday junction DNA helicase RuvA [Geobacter sulfurreducens PCA]
 gi|81702836|sp|Q74E87|RUVA_GEOSL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|39982943|gb|AAR34402.1| Holliday junction DNA helicase RuvA [Geobacter sulfurreducens PCA]
 gi|298505192|gb|ADI83915.1| Holliday junction DNA helicase RuvA [Geobacter sulfurreducens
           KN400]
          Length = 199

 Score =  172 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 64/205 (31%), Positives = 104/205 (50%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +     D ++IDV GV Y +  P  T   L + G   +L + TH+++D I L
Sbjct: 1   MIALLTGRLAHKSPDAIIIDVNGVGYRVQIPFSTYYELPEEGKTVSLSIHTHVKEDSISL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  ++++F LL SV G+G ++A  +LS I   EL  +I+  N   ++ IPGI  K 
Sbjct: 61  FGFRTLAEKEFFQLLISVSGIGPKMARDILSNIQPEELAAAIVQGNLVRLSSIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K   +      D++   +E     +    A +  SALVNLGY +      
Sbjct: 121 AERLVLELKEKVRKM------DVAPSAQEAPSSEAPAEVADDVASALVNLGYKEAVVRKV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +  +    A    ++R AL+ +
Sbjct: 175 LAEMSIE--PDASTEAVLRQALKVL 197


>gi|260060653|ref|YP_003193733.1| Holliday junction DNA helicase RuvA [Robiginitalea biformata
           HTCC2501]
 gi|88784783|gb|EAR15952.1| Holliday junction DNA helicase motor protein [Robiginitalea
           biformata HTCC2501]
          Length = 193

 Score =  172 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 101/205 (49%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +   +  +++I+  GV Y +   + T S L    +   ++    +R+D   L
Sbjct: 1   MIEHLTGRLIEKHPTHLVIECAGVGYFVNISLNTFSALPDE-EQLRIYTHLQVREDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R+ F LL SV GVGA  A  +LS +T  +L E+I   +   I  + GI  K 
Sbjct: 60  FGFYSVAEREAFRLLISVSGVGASTARTMLSSMTPAQLREAIASGDVPAIQAVKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +L+ K + +  + +  +              +    A+SAL  LGY + Q+  A
Sbjct: 120 AQRVILDLRDKILKIYDLDEVSL----------KPDNTNKEEALSALEVLGYSRKQSEKA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +VL+++ + A    II+  L+ +
Sbjct: 170 VDTVLRQDPS-ASVEGIIKQTLKNL 193


>gi|163751784|ref|ZP_02159001.1| Holliday junction DNA helicase RuvA [Shewanella benthica KT99]
 gi|161328348|gb|EDP99508.1| Holliday junction DNA helicase RuvA [Shewanella benthica KT99]
          Length = 205

 Score =  172 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 51/207 (24%), Positives = 104/207 (50%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI+V G+ Y +  P+ +   L ++     ++    +R+D   L
Sbjct: 1   MIGRLRGVLLEKQAPEILIEVSGLGYEVQMPLTSFYELPELNQEAIVYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  +R  F LL    GVG ++A+ +LS +T+ E V  +   +   + ++PG+  K 
Sbjct: 61  YGFMTKQERALFRLLIKTNGVGPKLALTILSGMTSVEFVACVERDDIATLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQD--MSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E++ K  SL            +         + +   +AI+AL+ LGY   QA+
Sbjct: 121 AERLLVEMRDKLKSLMEASAGSEREFMLKSNYRPAKIVNTAEDDAIAALLALGYKPAQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            +V +  K   +     ++I+ +L+++
Sbjct: 181 KSVSAAYK---DGMSSQELIKASLKSM 204


>gi|73540190|ref|YP_294710.1| Holliday junction DNA helicase motor protein [Ralstonia eutropha
           JMP134]
 gi|90135661|sp|Q475R7|RUVA_RALEJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|72117603|gb|AAZ59866.1| Holliday junction DNA helicase subunit RuvA [Ralstonia eutropha
           JMP134]
          Length = 193

 Score =  172 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 105/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L   G   TL  +  +R+D   L
Sbjct: 1   MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGQPVTLLTQLIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L  + G+GAR+A+ VLS ++ +EL ++I LQ +  + ++PGI  K 
Sbjct: 61  YGFGSAAERNTFRELIKITGIGARMALAVLSGMSVSELAQAITLQEAGRLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+M ELKGK                        +   A++ ++AL+ LGY + +A TA
Sbjct: 121 AERLMLELKGKL-----------GAELGHAPGAAPVHDSAVDILNALLALGYSEKEAATA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  V          S  I+LAL+A+S
Sbjct: 170 IKQV----PAGTGVSDGIKLALKALS 191


>gi|240017426|ref|ZP_04723966.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae FA6140]
 gi|240081568|ref|ZP_04726111.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae FA19]
 gi|240113847|ref|ZP_04728337.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae MS11]
 gi|240126556|ref|ZP_04739442.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae
           SK-92-679]
 gi|240129018|ref|ZP_04741679.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268597664|ref|ZP_06131831.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           FA19]
 gi|268599915|ref|ZP_06134082.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           MS11]
 gi|268685136|ref|ZP_06151998.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           SK-92-679]
 gi|268687398|ref|ZP_06154260.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268551452|gb|EEZ46471.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           FA19]
 gi|268584046|gb|EEZ48722.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           MS11]
 gi|268625420|gb|EEZ57820.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           SK-92-679]
 gi|268627682|gb|EEZ60082.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 194

 Score =  172 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL  ++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK ++           V               + +S L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLVA---------HTVTDRLFAASPAADETEDIVSTLLALGYNEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V        D  + +RLAL+ +
Sbjct: 172 VKGV----PKGTDVGEGVRLALKNL 192


>gi|295132466|ref|YP_003583142.1| Holliday junction ATP-dependent DNA helicase RuvA [Zunongwangia
           profunda SM-A87]
 gi|294980481|gb|ADF50946.1| Holliday junction ATP-dependent DNA helicase RuvA [Zunongwangia
           profunda SM-A87]
          Length = 193

 Score =  172 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 98/205 (47%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +      YV++D  GV Y ++  + T S +    +   +F    +++D   L
Sbjct: 1   MIHHLKGKLVEKNPTYVVVDCNGVGYFVHISLNTFSKIKDE-EQIAIFTHLQVKEDSHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R+ F LL SV G+GA  A  +LS +  T++ ++I   +   I  I GI  K 
Sbjct: 60  FGFQEKSEREIFRLLISVSGIGASTARTMLSSLDPTQIRDAIASGDVATIQSIKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K + +  + +            +    +    A+SAL  LGY + QA   
Sbjct: 120 AQRVILDLKDKIVKIFGIDE----------VFVEQSNTIKEEALSALETLGYARKQADKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  ++K+         +I+LAL+ +
Sbjct: 170 LNKLIKEI-EDPTVETLIKLALKNL 193


>gi|95931133|ref|ZP_01313858.1| Holliday junction DNA helicase RuvA [Desulfuromonas acetoxidans DSM
           684]
 gi|95132823|gb|EAT14497.1| Holliday junction DNA helicase RuvA [Desulfuromonas acetoxidans DSM
           684]
          Length = 199

 Score =  172 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 115/206 (55%), Gaps = 8/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G I     D V++DV GV Y +  P+ +   L +     TL + TH+R+D ++L
Sbjct: 1   MIARLCGTIVSKTIDQVIVDVNGVGYQVSVPLSSFYQL-EENQTATLQIYTHVREDALQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  ++Q F+LL S+ G+G +VA+ +LS +    L + ++ +++K +A +PGI  K 
Sbjct: 60  FGFQSLDEKQMFILLLSISGIGPKVALNILSHMDCHALRDCLLQEDAKRLATLPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K   L     Q      +   H     +   +A+SAL+NLGY + QA+ A
Sbjct: 120 ADRLILELREKVRKLYPEQPQTTQAAPEGVLH----NNHHDDALSALINLGYKEKQASAA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  + ++    +   ++++ AL+ +S
Sbjct: 176 LSRLTRE---FSSMEEMLKAALQQLS 198


>gi|182677007|ref|YP_001831153.1| Holliday junction DNA helicase RuvA [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|229560003|sp|B2IAW4|RUVA_BEII9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|182632890|gb|ACB93664.1| Holliday junction DNA helicase RuvA [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 205

 Score =  172 bits (435), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 88/206 (42%), Positives = 131/206 (63%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++   ED+V++DVQGV YI++C  RTL  L K G    L +E  +R+D IRL
Sbjct: 1   MIGKLTGLVDSQGEDHVILDVQGVGYIVFCSSRTLRLLPKPGASTALLIEMQVREDAIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S+++R WF LLQSVQGVGA+VA+ +   ++ATEL ++I LQ+   + + PG+  K+
Sbjct: 61  FGFPSEVERDWFRLLQSVQGVGAKVALALQGLLSATELAQAIALQDKASLGRAPGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+R++TELK K  +L  V    ++          + P  A +AI+ALVNLGYG+ QA  A
Sbjct: 121 AARLITELKDKMPALGPV--DSLTAKLTIAEAEGTAPVAAQDAITALVNLGYGRPQAAAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + L+     A  + +IR  L+ ++
Sbjct: 179 VATSLEALGETAPLADLIRRGLKELA 204


>gi|271500732|ref|YP_003333757.1| Holliday junction DNA helicase RuvA [Dickeya dadantii Ech586]
 gi|270344287|gb|ACZ77052.1| Holliday junction DNA helicase RuvA [Dickeya dadantii Ech586]
          Length = 205

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 101/206 (49%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++V GV Y ++ P+     L  +G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIVEKQPPQVLLEVGGVGYEVHMPMTCFYELPDLGQEAVIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L  V GVG ++A+ +LS ++A + V ++  Q    + ++PG+  K 
Sbjct: 61  FGFNNKQERSLFRELIKVNGVGPKLALAILSGMSAQQFVSAVERQEINALVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA--HICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   L+  +    S +    A  +          A +ALV LGY   +A 
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNAASDIALPAATGNTTPETDPLAEAEAALVALGYKPQEAG 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             V  V +     AD   +IR ALRA
Sbjct: 181 RMVSKVSR---PGADCETLIRDALRA 203


>gi|121634135|ref|YP_974380.1| Holliday junction DNA helicase motor protein [Neisseria
           meningitidis FAM18]
 gi|166230574|sp|A1KRU4|RUVA_NEIMF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|120865841|emb|CAM09573.1| Holliday junction DNA helicase [Neisseria meningitidis FAM18]
          Length = 194

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL +++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK ++           V               + +  L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLVA---------HAVTDGLFAAAPAADETEDIVGTLLALGYSEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V        D  + +RLAL+ +
Sbjct: 172 VKGV----PKGTDVGEGVRLALKNL 192


>gi|285808235|gb|ADC35769.1| Holliday junction DNA helicase RuvA [uncultured bacterium 293]
          Length = 198

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 100/206 (48%), Gaps = 9/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G I        +IDV GV Y +  P+ T   LG  GD  TL V TH+R+D I L
Sbjct: 1   MIAQLTGRIARKEPQEAVIDVGGVGYRVTIPVSTFYRLGVDGDTITLRVHTHLREDTIAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +   F  L +V  VG ++A+ +LS I   EL++++   +   + +IPG+  K 
Sbjct: 61  FGFATASEHDLFEKLITVANVGPKLAVNILSGIETDELIQALRGGDLARLTRIPGVGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K                          +   + +SALV+LGY + +A  A
Sbjct: 121 AERLVLELKDKMPK--------PGTAAAAPDAPPDGGAEREDVLSALVHLGYSRAEAERA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V    ++  +      ++R  LR++S
Sbjct: 173 VERATREGGSHR-FEDLLRQVLRSLS 197


>gi|119477229|ref|ZP_01617465.1| Holliday junction DNA helicase motor protein [marine gamma
           proteobacterium HTCC2143]
 gi|119449592|gb|EAW30830.1| Holliday junction DNA helicase motor protein [marine gamma
           proteobacterium HTCC2143]
          Length = 202

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       +L+DV GV Y I  P+ T+  L ++G    L     +R+D   L
Sbjct: 1   MIGRITGVLLEKQAPELLVDVNGVGYEIQAPMTTIYQLPEVGQVVVLHTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  V GVG ++A+ +LS I   E V  +   ++  + ++PG+  K 
Sbjct: 61  YGFAELQERRLFRALIKVNGVGPKLALTILSGIETDEFVRCVRDGDTLSLVRLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +          D   V+          S    A SAL+ LGY   +A   
Sbjct: 121 AERLLVEMKDRLKDWQIDSITDEFRVSGMGFS----NSITAEAESALIALGYKPQEAAK- 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
                    ++    Q+IR AL+ +
Sbjct: 176 -AIAAANNDSMTSSEQLIRAALKNM 199


>gi|304389092|ref|ZP_07371136.1| crossover junction ATP-dependent DNA helicase RuvA [Neisseria
           meningitidis ATCC 13091]
 gi|304336965|gb|EFM03155.1| crossover junction ATP-dependent DNA helicase RuvA [Neisseria
           meningitidis ATCC 13091]
          Length = 194

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL +++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK ++           V               + +  L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLVA---------HTVTDGLFAAAPAADETEDIVGTLLALGYSEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V        D  + +RLAL+ +
Sbjct: 172 VKGV----PKGTDVGEGVRLALKNL 192


>gi|299134170|ref|ZP_07027363.1| Holliday junction DNA helicase RuvA [Afipia sp. 1NLS2]
 gi|298590917|gb|EFI51119.1| Holliday junction DNA helicase RuvA [Afipia sp. 1NLS2]
          Length = 205

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 94/206 (45%), Positives = 136/206 (66%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   EDYV++DVQGV Y++ C  RTL  L   G+   L +ET++R+DQIRL
Sbjct: 1   MIGKLKGLIDSYGEDYVVLDVQGVGYLVSCSARTLQALPSPGEAAVLSIETYVREDQIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF SD++R+WF LLQ+VQGVGA+VA+ VLS +  ++L  +I L++   +A+ PG+  K+
Sbjct: 61  FGFRSDIEREWFRLLQTVQGVGAKVALAVLSTLPPSDLANAIALRDKAAVARTPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA + +SV    +   +         P    +AISALVNLGYGQ QA  A
Sbjct: 121 AERIVTELKDKAPAFASVDPAVVHLASAVDDDRAPGP--VRDAISALVNLGYGQPQAAAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + S  +     A+ +++IRL L+ ++
Sbjct: 179 IASASRDAGEGAETTKLIRLGLKELA 204


>gi|293390518|ref|ZP_06634852.1| holliday junction DNA helicase RuvA [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951052|gb|EFE01171.1| holliday junction DNA helicase RuvA [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 204

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 99/205 (48%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +       +L+DVQG+ Y +  P+ +   L ++G    LF    +R+D   L
Sbjct: 1   MIGHLTGILMEKQPPEILLDVQGIGYELLLPMTSFYNLPEVGKQTRLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  E   +I  +    + +IPGI  K 
Sbjct: 61  FGFAQKADRTLFRELIKTNGVGPKLALAILSAMSVDEFAYAIEREELSRLVKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELKGK   + ++        + +    I +    +  A++ALV LGY    A  
Sbjct: 121 AERLLVELKGKFKEVKTNDFFVQADHLPRFSTEISATVEPSNEAVAALVALGYKPLDAEK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  V K E       QIIR AL+A
Sbjct: 181 MVKKVSKPE---LSSEQIIREALKA 202


>gi|148263482|ref|YP_001230188.1| Holliday junction DNA helicase RuvA [Geobacter uraniireducens Rf4]
 gi|146396982|gb|ABQ25615.1| Holliday junction DNA helicase subunit RuvA [Geobacter
           uraniireducens Rf4]
          Length = 199

 Score =  171 bits (434), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +     D++++D+ GV Y +  P  T   L   G   TL + TH+++D I L
Sbjct: 1   MIALLAGKLAHKSPDFIILDIGGVGYRVQIPFSTYYALPDAGGVVTLNIYTHVKEDAINL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +++ F LL SV GVG ++  G+LS I A  L +++I  +   ++ IPGI  K 
Sbjct: 61  YGFRTMAEKEMFQLLISVSGVGPKLGNGILSNIEAENLSDALIRGDLARLSAIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K   +          + ++            + ISALVNLGY +     A
Sbjct: 121 AERLVLELREKVKKMGP------FSIREDAPPSPGRQDIRDDVISALVNLGYKEAVVQKA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++       A    I++ AL+ +
Sbjct: 175 LEAI--DIPADASVESILKQALKKL 197


>gi|218768952|ref|YP_002343464.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis Z2491]
 gi|20455265|sp|Q9JSM5|RUVA_NEIMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|121052960|emb|CAM09314.1| Holliday junction DNA helicase [Neisseria meningitidis Z2491]
 gi|254671573|emb|CBA09225.1| holliday junction DNA helicase [Neisseria meningitidis alpha153]
 gi|319411250|emb|CBY91657.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis WUE
           2594]
          Length = 194

 Score =  171 bits (434), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL +++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK ++           V               + +  L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLVA---------HAVTDGLFAAAPAADETEDIVGTLLALGYSEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V        D  + +RLAL+ +
Sbjct: 172 VKGV----PEGTDVGEGVRLALKNL 192


>gi|59802051|ref|YP_208763.1| Holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           FA 1090]
 gi|194099623|ref|YP_002002754.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae
           NCCP11945]
 gi|239999822|ref|ZP_04719746.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae 35/02]
 gi|240014978|ref|ZP_04721891.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae DGI18]
 gi|240116581|ref|ZP_04730643.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae PID18]
 gi|240118805|ref|ZP_04732867.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae PID1]
 gi|240122047|ref|ZP_04735009.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae PID24-1]
 gi|240124344|ref|ZP_04737300.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae PID332]
 gi|254494604|ref|ZP_05107775.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           1291]
 gi|260439658|ref|ZP_05793474.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae DGI2]
 gi|268595632|ref|ZP_06129799.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           35/02]
 gi|268602250|ref|ZP_06136417.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           PID18]
 gi|268604516|ref|ZP_06138683.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           PID1]
 gi|268682971|ref|ZP_06149833.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           PID332]
 gi|291042899|ref|ZP_06568640.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           DGI2]
 gi|293398091|ref|ZP_06642296.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae F62]
 gi|75355491|sp|Q5F636|RUVA_NEIG1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560109|sp|B4RPG0|RUVA_NEIG2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|59718946|gb|AAW90351.1| putative Holliday junction DNA helicase [Neisseria gonorrhoeae FA
           1090]
 gi|193934913|gb|ACF30737.1| Holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           NCCP11945]
 gi|226513644|gb|EEH62989.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           1291]
 gi|268549021|gb|EEZ44439.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           35/02]
 gi|268586381|gb|EEZ51057.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           PID18]
 gi|268588647|gb|EEZ53323.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           PID1]
 gi|268623255|gb|EEZ55655.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           PID332]
 gi|291013333|gb|EFE05299.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           DGI2]
 gi|291611354|gb|EFF40424.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae F62]
 gi|317165112|gb|ADV08653.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 194

 Score =  171 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL  ++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK ++           V               + +S L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLVA---------HTVTDGLFAASPAADETEDIVSTLLALGYNEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V        D  + +RLAL+ +
Sbjct: 172 VKGV----PKGTDVGEGVRLALKNL 192


>gi|190575569|ref|YP_001973414.1| Holliday junction DNA helicase RuvA [Stenotrophomonas maltophilia
           K279a]
 gi|254522833|ref|ZP_05134888.1| Holliday junction DNA helicase RuvA [Stenotrophomonas sp. SKA14]
 gi|229560132|sp|B2FRN6|RUVA_STRMK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|190013491|emb|CAQ47126.1| putative Holliday junction DNA helicase [Stenotrophomonas
           maltophilia K279a]
 gi|219720424|gb|EED38949.1| Holliday junction DNA helicase RuvA [Stenotrophomonas sp. SKA14]
          Length = 197

 Score =  171 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 55/204 (26%), Positives = 97/204 (47%), Gaps = 10/204 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV GV Y +  P+ T   L ++G   TL+     ++D + L
Sbjct: 1   MIGRLRGIVAYKAPPWLVVDVNGVGYELEAPMSTFYDLPELGREVTLYTHYSQKEDSVSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + +R+ F  +Q V G+GA++A+ VLS +T  E    +   +   + +IPGI  K 
Sbjct: 61  YGFLREGERRLFRDVQKVSGIGAKIALAVLSGVTVEEFARMVQAGDITALTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +A    +                 +      +A  AL  LGY   +A   
Sbjct: 121 AERMVLELRDRAAQFGAGGALPTGSG-------PAPADPLSDATVALQQLGYKPAEAARM 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
                 +   +A     IR AL++
Sbjct: 174 ARDAFNEGDEVATV---IRKALQS 194


>gi|146338241|ref|YP_001203289.1| Holliday junction DNA helicase RuvA [Bradyrhizobium sp. ORS278]
 gi|166230522|sp|A4YMC6|RUVA_BRASO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|146191047|emb|CAL75052.1| Holliday junction DNA helicase ruvA [Bradyrhizobium sp. ORS278]
          Length = 205

 Score =  171 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 89/206 (43%), Positives = 135/206 (65%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK++G I+   ED+V+IDV GV Y ++C  RTL  L   G+  TL +ET++R+DQI+L
Sbjct: 1   MIGKLRGLIDSYAEDFVIIDVGGVGYQVHCSARTLQALPSPGEAATLSIETYVREDQIKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF SD++R+WF LLQ+VQGVGA+VA+ VL  +   +L  +I L++   +A+ PG+  K+
Sbjct: 61  FGFRSDVEREWFRLLQTVQGVGAKVALAVLGTLPPADLGNAIALRDKAAVARTPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA + ++V    +      +      P    +AISAL+NLGYGQ QA  A
Sbjct: 121 AERIVTELKDKAPAFANVDPGVVRLSGAIEESRAPQP--VADAISALINLGYGQPQAAAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +  +   + A+ +Q+IRL L+ ++
Sbjct: 179 IAAASRAAGDKAETAQLIRLGLKELA 204


>gi|145590058|ref|YP_001156655.1| Holliday junction DNA helicase RuvA [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|189045760|sp|A4T027|RUVA_POLSQ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|145048464|gb|ABP35091.1| Holliday junction DNA helicase RuvA [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 193

 Score =  171 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 105/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +  ++   +L+D QGV Y I  P+ TL  L ++    TL     +R+D  +L
Sbjct: 1   MIGRIQGTLVSVHPPRLLVDCQGVGYEIDVPMSTLYQLPEVNQKITLLTHFQVREDAQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++++R+ F  L  + GVG+R A+ VLS ++  EL ++I LQ +  + Q+PGI  K 
Sbjct: 61  FGFATEIEREAFRQLIKISGVGSRTALAVLSGMSVNELAQAIALQEAGRLTQVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+  ELKGK      +       +                 + AL++LGY + +A  A
Sbjct: 121 AERLCLELKGKLAPDLGITGGKPQAI-----------EATSEVLQALLSLGYSEKEALLA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +          S  IR+ L+ +S
Sbjct: 170 LKQI----PPETSVSDGIRMGLKYLS 191


>gi|326335182|ref|ZP_08201379.1| crossover junction ATP-dependent DNA helicase RuvA [Capnocytophaga
           sp. oral taxon 338 str. F0234]
 gi|325692712|gb|EGD34654.1| crossover junction ATP-dependent DNA helicase RuvA [Capnocytophaga
           sp. oral taxon 338 str. F0234]
          Length = 196

 Score =  171 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 96/205 (46%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G++      YV+ID  G+ Y +   + T S L    +   L+    +++D   L
Sbjct: 1   MITQLQGHLVEKTPTYVIIDCNGIGYWVNISLNTFSQLSDS-EQIKLYTYLQIKEDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R+ F LL SV GVGA  A  +LS ++  +L  +I+  + + I  + GI  K 
Sbjct: 60  FGFFEKFEREIFSLLISVSGVGANTARVMLSSLSPAQLQSAIVNNDVRTIQSVKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +L+ K + L        S        +     +   A+SAL  LGY Q  A   
Sbjct: 120 AQRIILDLREKMLKL--------SSEGNIAPTVSQQQHYKEEALSALEVLGYPQKIAENV 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +L          ++I+ AL+ +
Sbjct: 172 VNKILSHATGEVSVEELIKQALKQL 196


>gi|297539687|ref|YP_003675456.1| Holliday junction DNA helicase RuvA [Methylotenera sp. 301]
 gi|297259034|gb|ADI30879.1| Holliday junction DNA helicase RuvA [Methylotenera sp. 301]
          Length = 192

 Score =  171 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 108/206 (52%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       VLID  GV Y    P+ T   L  IG+   +     +R+D   L
Sbjct: 1   MIGRLNGILLEKTPPLVLIDCNGVGYECEVPMSTFYNLPAIGEKVVMLTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF SD +R  F  L  V G+GA+ A+ +LS ++  +LV+++ +Q++ ++ ++PG+  K 
Sbjct: 61  YGFGSDQERATFRQLLKVNGIGAKSALSILSGLSIDDLVQAVAMQDTAMLTRVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K            +      ++     S + + ++AL++LGY + +A  A
Sbjct: 121 AERLLLELKDKF-----------TVAGLSPSNSNQPKSASSDVLNALISLGYNEREALAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  +       A  ++ I+LAL+++S
Sbjct: 170 VKLL----PADATVAEGIKLALKSLS 191


>gi|261400495|ref|ZP_05986620.1| holliday junction DNA helicase RuvA [Neisseria lactamica ATCC
           23970]
 gi|269209755|gb|EEZ76210.1| holliday junction DNA helicase RuvA [Neisseria lactamica ATCC
           23970]
          Length = 194

 Score =  171 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 102/205 (49%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFCNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL  ++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK ++           V               + +S L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLVA---------HTVTDGLFAAAPAADETEDIVSTLLALGYSEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V       AD  + +RLAL+ +
Sbjct: 172 VKGV----PKGADVGEGVRLALKNL 192


>gi|87118957|ref|ZP_01074855.1| Holliday junction DNA helicase RuvA [Marinomonas sp. MED121]
 gi|86165348|gb|EAQ66615.1| Holliday junction DNA helicase RuvA [Marinomonas sp. MED121]
          Length = 199

 Score =  171 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 104/205 (50%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +++DV GV Y +   + T   L  IG+  TL+    +++D   L
Sbjct: 1   MIGRLVGYLVEKVPPELMLDVNGVGYELTASMTTFYELPAIGEKVTLYTHFQVKEDAQSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           + F    +R  F +L  V GVG ++A+ VLS +++ EL+ ++   +   + +IPG+  K 
Sbjct: 61  YAFKQKDERALFRILIKVNGVGPKMALSVLSSMSSDELIANVQDSDVTALTRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K   L    +QD+    +    + + P     A +ALV+LGY   +A  A
Sbjct: 121 AERLIIELRDK---LGQAAKQDLFATPEVLRQVQADP--RQEAEAALVSLGYKPQEAAKA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  V     +     Q+I+ AL+ +
Sbjct: 176 IAKVP---VSSDSSEQVIKSALKNM 197


>gi|226329884|ref|ZP_03805402.1| hypothetical protein PROPEN_03797 [Proteus penneri ATCC 35198]
 gi|225200679|gb|EEG83033.1| hypothetical protein PROPEN_03797 [Proteus penneri ATCC 35198]
          Length = 206

 Score =  171 bits (433), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 60/207 (28%), Positives = 99/207 (47%), Gaps = 6/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG+I+G I       VLI+   GV Y I  P+     L  IG    ++ +  +R+D   
Sbjct: 1   MIGRIRGIILEKQPPVVLIEAGSGVGYEINMPMTCFYELPDIGQEAIIYTQFIVREDAQL 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    +R  F  L  V GVG ++A+ +LS ++A + V +I  ++   + ++PG+  K
Sbjct: 61  LYGFNQKQERALFRELIKVNGVGPKLALAILSGMSARQFVTAIENESISSLVKLPGVGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQ--DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            A R++ E+K +   L+  + +  D+       +           A +AL+ LGY   +A
Sbjct: 121 TAERLVVEMKDRFKGLNGDLFENSDIELPESTPSKAPKAADIEAEASAALIALGYKPQEA 180

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRA 204
              +  V K      D   +IR ALRA
Sbjct: 181 AKMISKVAK---LGTDSETLIREALRA 204


>gi|188580172|ref|YP_001923617.1| Holliday junction DNA helicase RuvA [Methylobacterium populi BJ001]
 gi|229560102|sp|B1Z924|RUVA_METPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|179343670|gb|ACB79082.1| Holliday junction DNA helicase RuvA [Methylobacterium populi BJ001]
          Length = 208

 Score =  171 bits (433), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 88/209 (42%), Positives = 133/209 (63%), Gaps = 5/209 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++   ED+V++DV GV Y+++C  RTL  L K G+   L +ETH+R+D IRL
Sbjct: 1   MIGKLKGIVDSYGEDFVILDVNGVGYVVHCSARTLQRLPKPGEATDLAIETHVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF SD +R+WF LLQ+VQGVG RVA+GVLS +   +L  +I   +   +A+ PG+  ++
Sbjct: 61  YGFRSDAEREWFRLLQTVQGVGTRVALGVLSVLEPAQLATAIATGDKGAVARAPGVGPRL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+R++ ELK KA + + V    ++     +      P    +AISALVNLGY Q QA+ A
Sbjct: 121 AARLVAELKDKAPAFAPVDPALVALTGAVEDRTAPQP--VADAISALVNLGYPQVQASAA 178

Query: 181 VVSVLKKEKNIADDSQ---IIRLALRAIS 206
           + + LK   + A+  +   +IRL LR ++
Sbjct: 179 IAAALKGLGDGAETVEAKTLIRLGLRELA 207


>gi|325128974|gb|EGC51825.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis N1568]
          Length = 194

 Score =  171 bits (433), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKNPPQIIIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL +++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK ++           V               + +  L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLVA---------HAVTDGLFAAAPAADETEDIVGTLLALGYSEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V        D  + +RLAL+ +
Sbjct: 172 VKGV----PKGTDVGEGVRLALKNL 192


>gi|313669264|ref|YP_004049548.1| Holliday junction DNA helicase [Neisseria lactamica ST-640]
 gi|313006726|emb|CBN88196.1| Holliday junction DNA helicase [Neisseria lactamica 020-06]
          Length = 194

 Score =  171 bits (432), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFCNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL  ++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK ++           V        S      + +  L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLVA---------HTVTDGLFAAPSENDETNDIVGTLLALGYSEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V        D  + +RLAL+ +
Sbjct: 172 VKGV----PKGTDVGEGVRLALKNL 192


>gi|197301661|ref|ZP_03166731.1| hypothetical protein RUMLAC_00387 [Ruminococcus lactaris ATCC
           29176]
 gi|197299101|gb|EDY33631.1| hypothetical protein RUMLAC_00387 [Ruminococcus lactaris ATCC
           29176]
          Length = 205

 Score =  171 bits (432), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 99/207 (47%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  + E   ++DV GV Y IY P + LS L  +G    +    ++R+D ++L
Sbjct: 1   MISYIRGELCDIEEQKAIVDVNGVGYGIYMPQQALSLLPPMGQQVKIHTYLNIREDAMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  D   F LL  V G+G +  + +LS ++  EL  +++  ++K I+  PGI  K 
Sbjct: 61  FGFLTKEDLNVFRLLIGVNGIGPKAGLNILSCLSPDELRFAVLSGDAKAISATPGIGKKT 120

Query: 121 ASRIMTELKGKA--ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A +++ ELK K     +           +       +  +    A+ AL  LGYG  ++ 
Sbjct: 121 AEKLILELKDKLNIEDMLEHAAHGGDSEDLASGTDTASNTMQAEAVQALTALGYGSAESL 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            AV          +    I++ AL+ +
Sbjct: 181 RAVKK---SSPECSSVEDILKEALKFL 204


>gi|54294187|ref|YP_126602.1| holliday junction DNA helicase [Legionella pneumophila str. Lens]
 gi|54297206|ref|YP_123575.1| Holliday junction DNA helicase RuvA [Legionella pneumophila str.
           Paris]
 gi|148358830|ref|YP_001250037.1| Holliday junction DNA helicase RuvA [Legionella pneumophila str.
           Corby]
 gi|296106875|ref|YP_003618575.1| holliday junction DNA helicase RuvA [Legionella pneumophila 2300/99
           Alcoy]
 gi|81368758|sp|Q5WX47|RUVA_LEGPL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|81370703|sp|Q5X5R9|RUVA_LEGPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230562|sp|A5IBE1|RUVA_LEGPC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|53750991|emb|CAH12402.1| holliday junction DNA helicase [Legionella pneumophila str. Paris]
 gi|53754019|emb|CAH15490.1| holliday junction DNA helicase [Legionella pneumophila str. Lens]
 gi|148280603|gb|ABQ54691.1| Holliday junction DNA helicase RuvA [Legionella pneumophila str.
           Corby]
 gi|295648776|gb|ADG24623.1| holliday junction DNA helicase RuvA [Legionella pneumophila 2300/99
           Alcoy]
 gi|307610000|emb|CBW99532.1| holliday junction DNA helicase [Legionella pneumophila 130b]
          Length = 199

 Score =  171 bits (432), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 93/207 (44%), Gaps = 11/207 (5%)

Query: 1   MIGKIKGNIEGL-YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG + G I        +++DV GV Y +   + T   +        L + T +R+D + 
Sbjct: 1   MIGWLHGQIIDKHQPGKLVLDVNGVGYDVETSLNTFFQIENGNQPIGLHIHTIVREDALL 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL   +R  F  L  V GVG ++AM VLS I+  E ++ I  +N+ ++ ++PGI  K
Sbjct: 61  LYGFLDKEERSLFRSLIKVNGVGPKLAMTVLSSISPKEFIQCIHQENAALLTKLPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ E++         V                       AISAL  LGY   +A  
Sbjct: 121 TAERLVVEMRDSIKQFDGSVSDTF-------QKQAGSTHSQQEAISALEALGYKPQEAWK 173

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
            V  +   +       Q+IR AL+ +S
Sbjct: 174 VVNKI---DNGNKSCEQLIREALQILS 197


>gi|226324735|ref|ZP_03800253.1| hypothetical protein COPCOM_02521 [Coprococcus comes ATCC 27758]
 gi|225207183|gb|EEG89537.1| hypothetical protein COPCOM_02521 [Coprococcus comes ATCC 27758]
          Length = 203

 Score =  171 bits (432), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 104/205 (50%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  L ED V++DV GV Y I+   + +  L  +G    +    ++++D ++L
Sbjct: 1   MISYIRGELVALEEDKVIVDVGGVGYGIFMSGQAMGQLPPVGSKVKIHTYLNVKEDAMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+      F LL  V G+G +  +G+L+++T  EL  +++ ++ K I+  PGI  K 
Sbjct: 61  YGFLNRDALSVFKLLIGVSGIGPKGGLGILAQLTPDELRFAVMSKDIKAISTAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK K   +  V+   +   N       +      +A+ AL  LGYG  +A  A
Sbjct: 121 AEKLIVELKDKL-KIEDVLDHQVEAANGADEDTVNAQGLQADAVQALTALGYGSTEALQA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V  +         +++ AL+ +
Sbjct: 180 VRKV--EMDESTTVEDLLKGALKYL 202


>gi|257095744|ref|YP_003169385.1| Holliday junction DNA helicase RuvA [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048268|gb|ACV37456.1| Holliday junction DNA helicase RuvA [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 191

 Score =  171 bits (432), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 100/206 (48%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       V++DV G+ Y +  P+ T   L   G+  +L     +R+D   L
Sbjct: 1   MIGRLSGILLEKNPPQVVLDVHGIGYELDVPMSTFYNLPANGEQVSLLTHFVVREDGQFL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +R  F  L  + GVGAR+A+ VLS ++ ++L + +  Q    + ++PGI  K 
Sbjct: 61  YGFASEPERFAFRQLLKISGVGARLALSVLSGLSVSDLAQVVARQEVGRLTKVPGIGTKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK               +   A I        + ++AL+ LGY   +A  A
Sbjct: 121 AERLLLELKGKL-------------ADALPASIAPADGARSDILNALLALGYNDREAAAA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +     +    S  IR AL+ +S
Sbjct: 168 MKLL----PDETTTSDGIRQALKLLS 189


>gi|163753887|ref|ZP_02161010.1| Holliday junction DNA helicase [Kordia algicida OT-1]
 gi|161326101|gb|EDP97427.1| Holliday junction DNA helicase [Kordia algicida OT-1]
          Length = 193

 Score =  171 bits (432), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 97/205 (47%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +       V+I+  GV Y I   + T S +    +   LF   H+R+D   L
Sbjct: 1   MITHIQGKLVEKNPTDVVIECNGVGYFINISLTTYSQIPNQ-ENIKLFTHLHVREDAQTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F LL SV G+G   A  +LS +T+ ++ E+I   +   I  + GI  K 
Sbjct: 60  YGFFQKAERAVFRLLISVSGIGTSTARTMLSSLTSEQICEAIGSGDVPTIQGVKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K + L  + +  MS             +     +SAL  LGY + Q+   
Sbjct: 120 AQRVIIELKDKVLKLYDLDEVSMS----------QNNTNKEETLSALEVLGYTRKQSERV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  ++K+        Q+I++AL+ +
Sbjct: 170 LDKIIKEMPAG-SVEQLIKMALKNL 193


>gi|299533018|ref|ZP_07046405.1| Holliday junction DNA helicase RuvA [Comamonas testosteroni S44]
 gi|298719242|gb|EFI60212.1| Holliday junction DNA helicase RuvA [Comamonas testosteroni S44]
          Length = 191

 Score =  171 bits (432), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 99/205 (48%), Gaps = 16/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +       VL+D  GV Y +  P+ T   L   G    L     +R+D   L
Sbjct: 1   MIGKLTGTLLEKNPPEVLVDCAGVGYEVQVPMSTFYNLPANGAKVALLTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +RQ F  L  + G+G R+A+ VLS ++  +L +++  Q +  + ++PGI  K 
Sbjct: 61  FGFATARERQTFRELIKITGIGPRMALAVLSGMSIDDLADAVSQQQAGRLVKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK               +     + +  +   + + AL+ LGY   +A+ A
Sbjct: 121 AERLLLELKGKI------------GADTGAQSLFANNNDQNDILQALMALGYSDKEASAA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +          S+ I+LAL+A+
Sbjct: 169 LKKL----PPDVGVSEGIKLALKAL 189


>gi|251793066|ref|YP_003007792.1| Holliday junction DNA helicase RuvA [Aggregatibacter aphrophilus
           NJ8700]
 gi|247534459|gb|ACS97705.1| holliday junction DNA helicase RuvA [Aggregatibacter aphrophilus
           NJ8700]
          Length = 204

 Score =  171 bits (432), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 64/205 (31%), Positives = 98/205 (47%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +       +L+DVQGV Y +  P+ +   L ++G   +LF    +R+D   L
Sbjct: 1   MIGHLTGILMEKQPPEILLDVQGVGYELLLPMTSFYNLPEVGKQTSLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  E   +I  +    + +IPGI  K 
Sbjct: 61  FGFSQKTDRTLFRELIKTNGVGPKLALAILSAMSVDEFAYAIEREELSRLVKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSS-VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELKGK   + +         +    A   +    +  A++AL+ LGY    A  
Sbjct: 121 AERLLVELKGKFKEVKTHDFFVQGDHLPSVNAETVATIEPSNEAVAALIALGYKPLDAEK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  V K E       Q+IR AL+A
Sbjct: 181 MVKKVSKPE---LSSEQLIREALKA 202


>gi|71279553|ref|YP_268842.1| Holliday junction DNA helicase RuvA [Colwellia psychrerythraea 34H]
 gi|90134812|sp|Q483C5|RUVA_COLP3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|71145293|gb|AAZ25766.1| Holliday junction DNA helicase RuvA [Colwellia psychrerythraea 34H]
          Length = 211

 Score =  171 bits (432), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 58/213 (27%), Positives = 107/213 (50%), Gaps = 11/213 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI+  GV Y +  P+ ++  L ++    T++    +R+D   L
Sbjct: 1   MIGRLRGMLVEKNSPEILIECAGVGYEVTMPMTSIYALPELEQQATIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + ++R+ F LL  V GVG ++A+ +LS ++A + V  +   +   I +IPG+  K 
Sbjct: 61  YGFANKVERKLFRLLIKVNGVGPKLALAILSNMSADQFVSCVRHDDISAIVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM--------PSFAINAISALVNLGY 172
           A R++ E++ +     +     +S        + +              +AI+AL++LGY
Sbjct: 121 AERLLIEMRDRLKDWQAQQIHLVSDDGVIPEQLSAELSQETTFVNDNKGDAINALLSLGY 180

Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
            Q QA  AV SV  +         IIR AL+++
Sbjct: 181 KQVQADKAVKSVYNR---GMSSENIIRDALKSM 210


>gi|328542537|ref|YP_004302646.1| Holliday junction ATP-dependent DNA helicase ruvA [polymorphum
           gilvum SL003B-26A1]
 gi|326412283|gb|ADZ69346.1| Holliday junction ATP-dependent DNA helicase ruvA [Polymorphum
           gilvum SL003B-26A1]
          Length = 205

 Score =  171 bits (432), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 84/206 (40%), Positives = 125/206 (60%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++   ED+V++DV GV Y ++CP R L  L + G+   LF+ET +R+D IRL
Sbjct: 1   MIGKLKGIVDSYGEDHVVLDVHGVGYQVHCPSRVLQGLPRTGEAAVLFIETLVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + +R+WF LL +VQGVGA+VA+ VL  + A E+  +I L +   I++ PG+  ++
Sbjct: 61  YGFAQEAEREWFRLLMTVQGVGAKVALAVLGVLKAGEIANAIALGDKATISRAPGVGKRV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK KA   +S+    ++        + + P     A+SAL NLGY Q QA+ A
Sbjct: 121 AERILAELKDKAPGYASIDADTLAVAQAVGDDVAARP--VAEAVSALTNLGYAQPQASAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V   LK     A    +IRL LR ++
Sbjct: 179 VARALKAAGEAATTETLIRLGLRELA 204


>gi|261868502|ref|YP_003256424.1| Holliday junction DNA helicase RuvA [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413834|gb|ACX83205.1| holliday junction DNA helicase RuvA [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 204

 Score =  171 bits (432), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 99/205 (48%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +       +L+DVQG+ Y +  P+ +   L ++G    LF    +R+D   L
Sbjct: 1   MIGHLTGILMEKQPPEILLDVQGIGYELLLPMTSFYNLPEVGKQTCLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  E   +I  +    + +IPGI  K 
Sbjct: 61  FGFAQKADRTLFRELIKTNGVGPKLALAILSAMSVDEFAYAIEREELSRLVKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELKGK   + ++        + +    I +    +  A++ALV LGY    A  
Sbjct: 121 AERLLVELKGKFKEVKTNDFFVQADHLPRFSTEISATVEPSNEAVAALVALGYKPLDAEK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  V K E       QIIR AL+A
Sbjct: 181 MVKKVSKPE---LSSEQIIREALKA 202


>gi|27376647|ref|NP_768176.1| Holliday junction DNA helicase RuvA [Bradyrhizobium japonicum USDA
           110]
 gi|44888480|sp|Q89U81|RUVA_BRAJA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|27349788|dbj|BAC46801.1| holliday junction DNA helicase [Bradyrhizobium japonicum USDA 110]
          Length = 205

 Score =  171 bits (432), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 89/206 (43%), Positives = 132/206 (64%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   ED+V++DV GV Y ++C  RTL  L   G+   L +ET++R+DQI+L
Sbjct: 1   MIGKLKGLIDSYGEDFVILDVGGVGYQVHCSTRTLQHLPSPGEAAVLSIETYVREDQIKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +D +R+WF LLQ+VQGVGA+VA+ VL  +  ++L  +I L++   +A+ PG+  K+
Sbjct: 61  FGFRTDQEREWFRLLQTVQGVGAKVALAVLGTLAPSDLANAIALRDKAAVARTPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA + ++V    +             P    +AISALVNLGYGQ QA  A
Sbjct: 121 AERIVTELKDKAPAFANVDPAVVHLAGAVDDQRAPRP--VADAISALVNLGYGQPQAAAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + S  +     A+ +Q+IRL L+ ++
Sbjct: 179 IASASRSAGEGAETAQLIRLGLKELA 204


>gi|213963573|ref|ZP_03391826.1| holliday junction DNA helicase RuvA [Capnocytophaga sputigena
           Capno]
 gi|213953853|gb|EEB65182.1| holliday junction DNA helicase RuvA [Capnocytophaga sputigena
           Capno]
          Length = 194

 Score =  170 bits (431), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +      +V+ID  GV Y +   + T S L + G+   L+    +++D   L
Sbjct: 1   MITQLQGKLIEKNPTHVVIDCHGVGYFVNISLNTYSALPE-GEAIKLYTYLQIKEDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R+ F+LL SV GVGA  A  +LS +TA  +  +II  +   I  + GI  K 
Sbjct: 60  YGFLTKAEREVFVLLLSVSGVGASTARTMLSSLTAAHVRSAIINGDVATIQAVKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K + L    +  ++ +N               A++AL  LG+ + QA   
Sbjct: 120 AQRVVLDLKDKMLKLQDFEEVSINTLNTN----------KEEALAALEVLGFVRKQAEKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +++K         +II+ AL+ +
Sbjct: 170 VDTIVKLNNEELSVEEIIKQALKRL 194


>gi|294054968|ref|YP_003548626.1| Holliday junction DNA helicase RuvA [Coraliomargarita akajimensis
           DSM 45221]
 gi|293614301|gb|ADE54456.1| Holliday junction DNA helicase RuvA [Coraliomargarita akajimensis
           DSM 45221]
          Length = 199

 Score =  170 bits (431), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 59/204 (28%), Positives = 102/204 (50%), Gaps = 6/204 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++KG ++      V++DV+GV Y ++ P+ T   +  +G+ C LF+ +  R+D   L
Sbjct: 1   MIARLKGTVDESTPLLVVLDVKGVGYEVHIPVTTAEQIPAVGETCNLFIHSVYREDSATL 60

Query: 61  FGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +GF S  DR +F LL   V G+G ++ + +LSR++   L  +I   +  ++++ PGI  K
Sbjct: 61  YGFASREDRDFFRLLVEKVSGIGPKIGISILSRMSVNVLQAAIASSDVALLSKCPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ ELK K        Q   S  + +        S   +A+ +L  LGY    A  
Sbjct: 121 TAERLVIELKDKV-----YTQAPSSNTSSKHNANPDTSSAFQDAVGSLTTLGYKNADADK 175

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
            +    ++    A    +IR AL+
Sbjct: 176 LIRKAAQRIGTDASVEDLIREALK 199


>gi|242239574|ref|YP_002987755.1| Holliday junction DNA helicase RuvA [Dickeya dadantii Ech703]
 gi|242131631|gb|ACS85933.1| Holliday junction DNA helicase RuvA [Dickeya dadantii Ech703]
          Length = 204

 Score =  170 bits (431), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLI+  GV Y ++ P+     L ++G    +F    +R+D   L
Sbjct: 1   MIGRLRGIVLEKQPPLVLIEAAGVGYEVHMPMTCFYELPELGQESVIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PG+  K 
Sbjct: 61  FGFNNKQERSLFRELIKVNGVGPKLALAILSGMSAQQFVFAVEREEIGALVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN-KEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +   L+  +    S ++    A     P     A +ALV LGY   +A  
Sbjct: 121 AERLVVEMKDRFKGLNGDLFTAASDISLPATAGKADEPDPQAEAEAALVALGYKPQEAAR 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  V +     AD   +IR ALRA
Sbjct: 181 MVSKVAR---PDADCETLIREALRA 202


>gi|91978630|ref|YP_571289.1| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris
           BisB5]
 gi|123735096|sp|Q130V1|RUVA_RHOPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|91685086|gb|ABE41388.1| Holliday junction DNA helicase subunit RuvA [Rhodopseudomonas
           palustris BisB5]
          Length = 205

 Score =  170 bits (431), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 90/206 (43%), Positives = 133/206 (64%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   EDYV++DV GV Y ++C  RTL  L   G+  TL +ET++R+DQI+L
Sbjct: 1   MIGKLKGLIDSYGEDYVILDVHGVGYQVHCSSRTLQALPSPGEAATLSIETYVREDQIKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +D +R+WF LLQ+VQ VGA+VA+ VLS +   +L  +I L++   +A+ PG+  K+
Sbjct: 61  FGFRTDHEREWFRLLQTVQSVGAKVALAVLSTLPPNDLANAIALRDKAAVARTPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI++ELK K  +LS+V    +        +    P    +AISALVNLGYGQ QA  A
Sbjct: 121 AERIVSELKDKVPALSNVDPAVVQLSGALDDNRAPRP--VTDAISALVNLGYGQPQAAAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +  +   + A  +Q+I+L L+ +S
Sbjct: 179 IAAAARAAGDDAATAQLIKLGLKELS 204


>gi|305665237|ref|YP_003861524.1| Holliday junction DNA helicase motor protein [Maribacter sp.
           HTCC2170]
 gi|88709990|gb|EAR02222.1| Holliday junction DNA helicase motor protein [Maribacter sp.
           HTCC2170]
          Length = 193

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 102/205 (49%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +      +V+I+  GV Y +   + T S L  + +  +L+    +++D   L
Sbjct: 1   MITHLKGKLVEKNPTHVIIECAGVGYFVNISLHTFSNLKDV-ENISLYTHLQVKEDSHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R+ F LL SV G+G+  A  +LS ++  ++ ++I   +   I  I GI  K 
Sbjct: 60  FGFAEKSEREIFRLLLSVSGIGSSTARTMLSSLSPAQIRDAIANGDVATIQGIKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +L+ K + +  + +  +S          S  +    A+SAL  LG+ + QA   
Sbjct: 120 AQRVILDLRDKILKVYDIDEVSLS----------SNNTNKEEALSALEVLGFARRQAEKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  VL ++ ++     II+ AL+ +
Sbjct: 170 VDKVLSQDSSL-SVENIIKHALKNL 193


>gi|148258116|ref|YP_001242701.1| Holliday junction DNA helicase RuvA [Bradyrhizobium sp. BTAi1]
 gi|166230521|sp|A5ERK1|RUVA_BRASB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|146410289|gb|ABQ38795.1| Holliday junction DNA helicase subunit RuvA [Bradyrhizobium sp.
           BTAi1]
          Length = 205

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 89/206 (43%), Positives = 134/206 (65%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   ED+V++DV GV Y ++C  RTL  L   G+  TL +ET++R+DQI+L
Sbjct: 1   MIGKLKGLIDSYAEDFVILDVGGVGYQVHCSARTLQALPSPGEAATLSIETYVREDQIKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF SD++R+WF LLQ+VQGVGA+VA+ VL  +   +L  +I L++   +A+ PG+  K+
Sbjct: 61  FGFRSDVEREWFRLLQTVQGVGAKVALAVLGTLPPADLANAIALRDKAAVARTPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA + + V    +      +      P    +AISAL+NLGYGQ QA  A
Sbjct: 121 AERIVTELKDKAPAFADVDPGVIRLSGAIEDSRAPQP--IADAISALINLGYGQPQAAAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +  +   + A+ +Q+IRL L+ ++
Sbjct: 179 IAAASRAAGDKAETAQLIRLGLKELA 204


>gi|227823320|ref|YP_002827292.1| Holliday junction DNA helicase RuvA [Sinorhizobium fredii NGR234]
 gi|254767382|sp|C3MIH6|RUVA_RHISN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|227342321|gb|ACP26539.1| holliday junction DNA helicase RuvA [Sinorhizobium fredii NGR234]
          Length = 205

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 92/206 (44%), Positives = 139/206 (67%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + ED+V++DV GV Y+ YC  RTL+ LG  G+   LF+ET++R+DQ+RL
Sbjct: 1   MIGKLKGTIDEIGEDFVVLDVHGVGYVAYCSARTLAKLGSAGEAAVLFIETYVREDQLRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLS L+R+WF LLQ+VQGVG++VA+ +L+ +T  EL  +I LQ+   +A+ PG+  K+
Sbjct: 61  FGFLSALEREWFRLLQTVQGVGSKVALALLTTLTPGELANAIALQDKTSVARAPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA + +  +   +    +    + + P    +A+SAL NLGY +DQA  A
Sbjct: 121 AVRIVTELKNKAPAFAGEMSASIGLKQELGEGVAAAP--VSDAVSALTNLGYSRDQAANA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + LK      D +++IRL L+ ++
Sbjct: 179 VAAALKNGGEGGDSAKLIRLGLKELA 204


>gi|254805692|ref|YP_003083913.1| holliday junction DNA helicase [Neisseria meningitidis alpha14]
 gi|254669234|emb|CBA08082.1| holliday junction DNA helicase [Neisseria meningitidis alpha14]
          Length = 194

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 100/205 (48%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   LF +  +R+D   L
Sbjct: 1   MISRLTGKLVEKTPPQIVIDVNGVGYEADVSMQTFCNLPPVGESVQLFTQLIIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V G+GA+ A+G+LS +TA EL  ++  ++ K ++  PGI  K 
Sbjct: 61  FGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK ++           V               + +  L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLVA---------HTVTDGLFAAAPAADETEDIVGTLLALGYSEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V        D  + +RLAL+ +
Sbjct: 172 VKGV----PKGTDVGEGVRLALKNL 192


>gi|91216982|ref|ZP_01253945.1| Holliday junction DNA helicase motor protein [Psychroflexus torquis
           ATCC 700755]
 gi|91184853|gb|EAS71233.1| Holliday junction DNA helicase motor protein [Psychroflexus torquis
           ATCC 700755]
          Length = 193

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 99/205 (48%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +      ++++D  G+ Y +   + T S L K  +  T++    +++D   L
Sbjct: 1   MITQLRGRLLEKNPTHIVVDCNGIGYEVNISLHTFSRL-KGEEQITIYTHLQVKEDSHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   +R  F  L SV G+GA  A  +LS +T  ++VE+I  ++S  I  I GI  K 
Sbjct: 60  YGFMEKAERLVFRQLLSVSGIGANTARMMLSSLTPEQVVEAISTEDSDTIQSIKGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K            S     +       S    A+SAL  LGY + Q+   
Sbjct: 120 AQRVILDLKDKIR----------SSEEYSEIVNTPSNSNKEEALSALETLGYTRKQSGKI 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +     + A+   II+LAL+ +
Sbjct: 170 ISKICNNNPD-ANVEDIIKLALKNL 193


>gi|322420882|ref|YP_004200105.1| Holliday junction DNA helicase RuvA [Geobacter sp. M18]
 gi|320127269|gb|ADW14829.1| Holliday junction DNA helicase RuvA [Geobacter sp. M18]
          Length = 199

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 100/205 (48%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G I     D+V++DV GV Y ++ P  T   L   G   TL + T +++D I L
Sbjct: 1   MIALLTGKIAYKAPDHVILDVNGVGYHVFIPFSTYYALPAEGGTATLQIHTSVKEDAINL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +++ F LL  V GVG ++A  +LS     EL ES++  +   ++ IPGI  K 
Sbjct: 61  YGFRTQQEKELFQLLIGVSGVGPKLANSILSNSEPAELAESLVSGDLARLSAIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K   L       ++      A          + +SAL+NLGY +     A
Sbjct: 121 AERLVLELKEKIRKLG------IAQPATSAAAAPVRQETREDVLSALINLGYKESVVQKA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +  K    A    +++ AL+ +
Sbjct: 175 LGEL--KFPEDATVEALLKQALKVL 197


>gi|332184195|gb|AEE26449.1| Holliday junction DNA helicase RuvA [Francisella cf. novicida 3523]
          Length = 216

 Score =  170 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 59/212 (27%), Positives = 103/212 (48%), Gaps = 12/212 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +       +LIDV G+ Y ++ P+ T   LG I    +L+    +R+D  +L
Sbjct: 1   MISFIKGVLIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQISLYTHFVVREDAQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S +D++ F  L  V G+GAR A+ +LS + +  L+  I  ++  ++A +PGI  K 
Sbjct: 61  YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSC---------VNKEQAHICSMPSFAINAISALVNLG 171
           A R++ E+  K + +++ +    S            +         S    ++ AL+ LG
Sbjct: 121 AERLVVEIYDKLLKMANEIYAQSSGTKVANLDSQAPQVPTPTVLANSIFNESVDALLALG 180

Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
           Y Q  A     S +    +    +++IR AL+
Sbjct: 181 YKQKDAEKMARSAM---GDATTAAEVIRKALQ 209


>gi|120434550|ref|YP_860244.1| Holliday junction ATP-dependent DNA helicase RuvA [Gramella
           forsetii KT0803]
 gi|166230555|sp|A0LXS4|RUVA_GRAFK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|117576700|emb|CAL65169.1| Holliday junction ATP-dependent DNA helicase RuvA [Gramella
           forsetii KT0803]
          Length = 193

 Score =  170 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 100/205 (48%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +      YV+I+  G+ Y I   + T S +    +  +++    +++D   L
Sbjct: 1   MIHHLKGQLIEKNPTYVVIECNGIGYYINISLHTFSLIPDS-EAVSVYTHLQVKEDSHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F LL SV GVG   A  +LS +   E+ E+I  ++   I  + GI  K 
Sbjct: 60  YGFAEKSEREIFRLLISVSGVGTSTARMMLSSLQPREVTEAIASEDVATIQSVKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K + +          +  ++  +    +    A+SAL  LGY + QA   
Sbjct: 120 AQRVILDLKDKVLKV----------LGDDEVFVSQSNTNKEEALSALEILGYNRRQAGKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +LK++   +    II++AL+ +
Sbjct: 170 VEKILKEDPE-STVESIIKMALKKL 193


>gi|254429429|ref|ZP_05043136.1| Holliday junction DNA helicase RuvA [Alcanivorax sp. DG881]
 gi|196195598|gb|EDX90557.1| Holliday junction DNA helicase RuvA [Alcanivorax sp. DG881]
          Length = 200

 Score =  170 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 96/206 (46%), Gaps = 7/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L+DV GV Y +  P+     L   G   TL     +R+D   L
Sbjct: 1   MIGQLRGTLLEKRPPVLLLDVGGVGYEVEAPMTVFYDLPDAGAELTLHTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L  V GVG ++A+ +LS I A  L   I  Q++  + ++PGI  K 
Sbjct: 61  YGFADRYERELFRALIKVNGVGPKMALAILSGIEADRLARCIQDQDTTSLVKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+  +   +          V+  Q           +AI+AL  LGY    A  A
Sbjct: 121 AERLVIEMSDRLDKIDGGPVSLPGRVDTRQPD-----DARSDAIAALEALGYRNKDAAAA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V     ++       Q+IR AL++++
Sbjct: 176 VAKAADEDG--LSSEQLIRKALKSLA 199


>gi|160896673|ref|YP_001562255.1| Holliday junction DNA helicase RuvA [Delftia acidovorans SPH-1]
 gi|229560027|sp|A9BUG7|RUVA_DELAS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|160362257|gb|ABX33870.1| Holliday junction DNA helicase RuvA [Delftia acidovorans SPH-1]
          Length = 190

 Score =  170 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 99/206 (48%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +       VL+D  GV Y +  P+ T   L   G   +L     +R+D   L
Sbjct: 1   MIGKLTGTLLEKNPPEVLVDCGGVGYEVQVPMSTFYNLPASGAKVSLLTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +RQ F  L  + G+G R+A+ VLS ++  +L +++ LQ    + ++PGI  K 
Sbjct: 61  YGFGTHSERQAFRELIKITGIGPRMALSVLSGMSVEDLAQAVTLQEVGRLVKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK  +                A    + +   + + AL+ LGY    A  A
Sbjct: 121 AERLLLELKGKIGA-------------DTGAQSLFVNNDQNDIVQALMALGYSDKDAAAA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +          ++ I+LAL+A++
Sbjct: 168 LKKL----PPDVGVTEGIKLALKALA 189


>gi|147677361|ref|YP_001211576.1| holliday junction resolvasome, DNA-binding subunit [Pelotomaculum
           thermopropionicum SI]
 gi|146273458|dbj|BAF59207.1| holliday junction resolvasome, DNA-binding subunit [Pelotomaculum
           thermopropionicum SI]
          Length = 211

 Score =  170 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 98/205 (47%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +  +    V++DV G+ Y +  P+  L+ L   G+   L+    +R++   L
Sbjct: 16  MISYIKGKLAEVQAGAVVLDVGGIGYRVQVPLSVLNKLPARGEDVLLYTHLAVREEGFFL 75

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +  +F+ L  V G+G +VA+ +L+  +  EL   II  ++  + ++PG+  K 
Sbjct: 76  YGFSDQNELGFFLKLLGVSGIGPKVALAILTIFSPDELGRIIIGGDTAALTRVPGVGKKT 135

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K    +   +            +        +A+ AL  LGY   +A  A
Sbjct: 136 AGRIILELKDKVTETTLERE-----------PLSGRSGVEADAVEALEALGYTAAEALKA 184

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  VLK        ++I+R ALR +
Sbjct: 185 VKEVLKG-PGQPSAAEIVREALRLL 208


>gi|251789856|ref|YP_003004577.1| Holliday junction DNA helicase RuvA [Dickeya zeae Ech1591]
 gi|247538477|gb|ACT07098.1| Holliday junction DNA helicase RuvA [Dickeya zeae Ech1591]
          Length = 205

 Score =  170 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 100/206 (48%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLI+  GV Y ++ P+     L  +G    +F    +R+D   L
Sbjct: 1   MIGRLRGIVLEKQPPLVLIEAGGVGYEVHMPMTCFYELPDLGQEAVIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L  V GVG ++A+ +LS ++A + V ++  Q    + ++PG+  K 
Sbjct: 61  FGFNNKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAVERQEINTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMS--CVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   L+  +    S   +  +             A +ALV LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNADSDMALPAQTGEAAPQADPQAEAEAALVALGYKPQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             V  V +     AD   +IR ALRA
Sbjct: 181 RMVNKVSR---PGADCETLIRDALRA 203


>gi|209886413|ref|YP_002290270.1| holliday junction DNA helicase RuvA [Oligotropha carboxidovorans
           OM5]
 gi|226698735|sp|B6JIZ6|RUVA_OLICO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|209874609|gb|ACI94405.1| holliday junction DNA helicase RuvA [Oligotropha carboxidovorans
           OM5]
          Length = 205

 Score =  170 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 94/206 (45%), Positives = 137/206 (66%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   EDYV++DVQGV Y+++C  RTL  L   G+   L +ET++R+DQI+L
Sbjct: 1   MIGKLKGVIDSYGEDYVILDVQGVGYLVHCATRTLQALPSSGEAAVLSIETYVREDQIKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF SD++R+WF LLQ+VQGVGA+VA+ VLS +  ++L  +I L++   +A+ PG+  K+
Sbjct: 61  FGFRSDIEREWFRLLQTVQGVGAKVALAVLSTLPPSDLANAIALRDKAAVARTPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA + ++V    +             P    +AISALVNLGYGQ QA  A
Sbjct: 121 AERIVTELKDKAPAFANVDPAVVHLAGAVDDDRAPRP--VKDAISALVNLGYGQPQAAAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + SV +     A+ +Q+IRL L+ ++
Sbjct: 179 IASVARDAGEGAETAQLIRLGLKELA 204


>gi|52841519|ref|YP_095318.1| Holliday junction DNA helicase RuvA [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|81377601|sp|Q5ZW00|RUVA_LEGPH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|52628630|gb|AAU27371.1| Holliday junction DNA helicase RuvA [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 199

 Score =  170 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 93/207 (44%), Gaps = 11/207 (5%)

Query: 1   MIGKIKGNIEGL-YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG + G I        +++DV GV Y +   + T   +        L + T +R+D + 
Sbjct: 1   MIGWLHGQIIDKHQPGKLVLDVNGVGYDVETSLNTFFQIENGNQPVGLHIHTIVREDALL 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL   +R  F  L  V GVG ++AM VLS I+  E ++ I  +N+ ++ ++PGI  K
Sbjct: 61  LYGFLDKEERSLFRSLIKVNGVGPKLAMTVLSSISPKEFIQCIHQENAALLTKLPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ E++         V                       AISAL  LGY   +A  
Sbjct: 121 TAERLVVEMRDSIKQFDGSVSDTF-------QKQAGSTHSQQEAISALEALGYKPQEAWK 173

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
            +  +   +       Q+IR AL+ +S
Sbjct: 174 VMNKI---DNGNKSCEQLIREALQILS 197


>gi|15602842|ref|NP_245914.1| Holliday junction DNA helicase motor protein [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|13431841|sp|P57893|RUVA_PASMU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|12721303|gb|AAK03061.1| RuvA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 204

 Score =  170 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 67/205 (32%), Positives = 98/205 (47%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +   +   +L+DVQGV Y +  P+ +   L  IG    LF    +R+D   L
Sbjct: 1   MIGHLTGRLVEKHPPEILLDVQGVGYELLLPMTSFYQLPDIGQQTALFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  E   +I  +    + +IPG+  K 
Sbjct: 61  FGFSQKTDRTLFRELIKTNGVGPKLALAILSAMSVEEFAYAIEREELSKLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF-AINAISALVNLGYGQDQATT 179
           A R++ ELKGK   +        S   K+  H  +     A  AISAL+ LGY   +A  
Sbjct: 121 AERLLVELKGKFKGIQQEDFFIESQHLKQPEHALNEQDIPASEAISALIALGYKAAEAEK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  + K         Q+IR AL+A
Sbjct: 181 LVKKISK---PALSSEQLIREALKA 202


>gi|224456850|ref|ZP_03665323.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370278|ref|ZP_04986283.1| holliday junction DNA helicase [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874591|ref|ZP_05247301.1| holliday junction DNA helicase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|90135024|sp|Q5NH17|RUVA_FRATT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|151568521|gb|EDN34175.1| holliday junction DNA helicase [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840590|gb|EET19026.1| holliday junction DNA helicase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282158951|gb|ADA78342.1| holliday junction DNA helicase, subunit A [Francisella tularensis
           subsp. tularensis NE061598]
          Length = 216

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 12/212 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +       +LIDV G+ Y ++ P+ T   LG I    +L+    +R+D  +L
Sbjct: 1   MISFIKGVLIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQVSLYTHFVVREDAQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S +D++ F  L  V G+GAR A+ +LS + +  L+  I  ++  ++A +PGI  K 
Sbjct: 61  YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDM---------SCVNKEQAHICSMPSFAINAISALVNLG 171
           A R++ E+  K + +++ +             S   +    +    S    ++ AL+ LG
Sbjct: 121 AERLVVEIYDKLLKMANEIYAQTSGTTTTSQDSQAQQAPTSVVLANSIFNESVDALLALG 180

Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
           Y Q  A     S +    +    +++IR AL+
Sbjct: 181 YKQKDAEKMARSAM---GDATTVAEVIRKALQ 209


>gi|83312317|ref|YP_422581.1| Holliday junction DNA helicase RuvA [Magnetospirillum magneticum
           AMB-1]
 gi|123726899|sp|Q2W2A3|RUVA_MAGMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|82947158|dbj|BAE52022.1| Holliday junction resolvasome, DNA-binding subunit
           [Magnetospirillum magneticum AMB-1]
          Length = 212

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 80/207 (38%), Positives = 121/207 (58%), Gaps = 3/207 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K+KG I+ L +D+ ++D  GV Y++ C  +TL+ L + G    LFVET +R+D I L
Sbjct: 1   MIAKLKGLIDSLGDDWAVVDCNGVGYLVACSSKTLARL-ETGTAAALFVETQVREDAISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL   +R WF LL +VQGVGA+VA+ +LS  +  +L++ I  Q+   + +  G+  K+
Sbjct: 60  FGFLETGERDWFRLLTTVQGVGAKVALAILSVASPDQLLQIIAAQDKAGLTRANGVGPKL 119

Query: 121 ASRIMTELKGKAIS--LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A RI+TELK KA    L       +       A + +      +A+SALVNLGY + +A 
Sbjct: 120 AVRILTELKDKAGKIALGGFSPGGIKDALSASAPLPAASGRMEDAVSALVNLGYKRLEAF 179

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            AV    ++  + AD S +IR AL+ +
Sbjct: 180 QAVGETARELGDEADSSALIRAALKHL 206


>gi|33594301|ref|NP_881945.1| Holliday junction DNA helicase motor protein [Bordetella pertussis
           Tohama I]
 gi|33602977|ref|NP_890537.1| Holliday junction DNA helicase motor protein [Bordetella
           bronchiseptica RB50]
 gi|44888431|sp|Q7VTT9|RUVA_BORPE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|44888438|sp|Q7WGB6|RUVA_BORBR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|33564376|emb|CAE43681.1| holliday junction DNA helicase [Bordetella pertussis Tohama I]
 gi|33568608|emb|CAE34366.1| holliday junction DNA helicase [Bordetella bronchiseptica RB50]
 gi|332383712|gb|AEE68559.1| Holliday junction DNA helicase RuvA [Bordetella pertussis CS]
          Length = 190

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 67/205 (32%), Positives = 104/205 (50%), Gaps = 17/205 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       V +DV GV Y I  P+ TL  L + G   TLF    +R+D   L
Sbjct: 1   MIGRITGTLIEKSPPVVCVDVNGVGYEIDVPMSTLYALPETGARVTLFTHLVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L  V G+GAR A+ VLS ++  EL ++I LQ +  + ++PGI  K 
Sbjct: 61  YGFGSSAERSTFRELIKVTGIGARTALAVLSGLSVAELSQAITLQETGRLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++GK  +                A   +      + ++AL+ LGY   ++  A
Sbjct: 121 AERLLLEMRGKLGA-------------DIGATPHAASGHQSDILNALLALGYSDKESQAA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +     +  D S+ IRLAL+A+
Sbjct: 168 LKKL----PDGVDVSEGIRLALKAL 188


>gi|163758803|ref|ZP_02165890.1| Holliday junction DNA helicase motor protein [Hoeflea phototrophica
           DFL-43]
 gi|162284093|gb|EDQ34377.1| Holliday junction DNA helicase motor protein [Hoeflea phototrophica
           DFL-43]
          Length = 205

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 101/206 (49%), Positives = 141/206 (68%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG IE + ED+VLIDV GVCY+ +C  RTLS LG  G+   LF+ET++R+DQ++L
Sbjct: 1   MIGKLKGTIEEIDEDHVLIDVHGVCYVAFCSSRTLSRLGSAGEAAVLFIETYVREDQLKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + L+R+WF LLQSVQGVGA+VA+ VLS +T +EL  +I LQ+  ++A+ PGI  K+
Sbjct: 61  FGFETALEREWFRLLQSVQGVGAKVALAVLSTLTTSELANAIALQDKAMVARAPGIGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK KA +LS      M    +    + S P    +A+SAL NLGY +DQA  A
Sbjct: 121 AQRIVAELKNKAPALSGDAGSTMGLKQELGEGVASAP--IADAVSALCNLGYSRDQAANA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + +K     AD +++IRL L+ ++
Sbjct: 179 VAAAMKTAGEDADSAKLIRLGLKELA 204


>gi|153855299|ref|ZP_01996465.1| hypothetical protein DORLON_02479 [Dorea longicatena DSM 13814]
 gi|149752298|gb|EDM62229.1| hypothetical protein DORLON_02479 [Dorea longicatena DSM 13814]
          Length = 204

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 100/205 (48%), Gaps = 2/205 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +EG+ ED V++DV GV Y IY     +  L  +G    +    H+++D ++L
Sbjct: 1   MITYIRGILEGMEEDKVIVDVGGVGYGIYMAGTAMGRLPALGKEVKIHTHLHVKEDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  + + F LL  V G+G +  +G+LS +   +L  ++   + K I   PGI  K 
Sbjct: 61  YGFLTRDELRVFRLLIGVSGIGPKGGLGILSALGPDDLRFAVASNDVKAIQAAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK K     ++     +  N               A+ ALV LGYG  +A  A
Sbjct: 121 AEKLILELKDKLKLEDALENAANAVQNTADTSAGMANEMTGEAVQALVALGYGNTEALKA 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V  +         ++R +L+ +
Sbjct: 181 VRQV--EITEEMSVEDVLRQSLKYM 203


>gi|332519991|ref|ZP_08396455.1| Holliday junction DNA helicase RuvA [Lacinutrix algicola 5H-3-7-4]
 gi|332044550|gb|EGI80744.1| Holliday junction DNA helicase RuvA [Lacinutrix algicola 5H-3-7-4]
          Length = 193

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 97/205 (47%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +       V+ID  GV Y++   + T S +    +   LF    +++D   L
Sbjct: 1   MITHIKGKMVEKNPTDVVIDCNGVGYLLNISLNTFSQIPDQ-ESIHLFTHLQVKEDAHSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F LL SV G+G   A  +LS +T  ++ E I   +  +I  I GI  K 
Sbjct: 60  YGFFTKGEREVFRLLISVSGIGTNTARTMLSSLTPKQIREGIATADVALIQSIKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K + +  + +            +    +    A+SAL  LG+ + QA   
Sbjct: 120 AQRVILDLKDKILKIYDIDE----------VSVNRNNTNKDEALSALEVLGFAKKQAERV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  ++  +   A    II+LAL+ +
Sbjct: 170 VDKIVVAQPE-ASVEAIIKLALKNL 193


>gi|264680422|ref|YP_003280332.1| Holliday junction DNA helicase RuvA [Comamonas testosteroni CNB-2]
 gi|262210938|gb|ACY35036.1| Holliday junction DNA helicase RuvA [Comamonas testosteroni CNB-2]
          Length = 191

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 98/205 (47%), Gaps = 16/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +       VL+D  GV Y +  P+ T   L   G    L     +R+D   L
Sbjct: 1   MIGKLTGTLLEKNPPEVLVDCAGVGYEVQVPMSTFYNLPANGAKVALLTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +RQ F  L  + G+G R+A+ VLS ++  +L +++  Q +  + ++PGI  K 
Sbjct: 61  FGFGTARERQTFRELIKITGIGPRMALAVLSGMSIDDLADAVSQQQAGRLVKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK               +     + +  +   +   AL+ LGY   +A+ A
Sbjct: 121 AERLLLELKGKI------------GADTGAQSLFANNNDQNDIQQALMALGYSDKEASAA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +          S+ I+LAL+A+
Sbjct: 169 LKKL----PPDVGVSEGIKLALKAL 189


>gi|325267123|ref|ZP_08133791.1| crossover junction ATP-dependent DNA helicase RuvA [Kingella
           denitrificans ATCC 33394]
 gi|324981361|gb|EGC17005.1| crossover junction ATP-dependent DNA helicase RuvA [Kingella
           denitrificans ATCC 33394]
          Length = 194

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 100/205 (48%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       ++IDVQGV Y +   ++T   L   G+   L+ +  +R+D   L
Sbjct: 1   MIGRLHGILAEKQPPQIVIDVQGVGYEVEVSMQTFYTLPAAGEAVRLYTQLIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  L  V G+GA+ A+G+LS +++ EL +++  ++ K ++ +PGI  K 
Sbjct: 61  FGFADAGERATFRQLIKVSGIGAKTALGILSALSSDELAQAVAQEDVKRLSSVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK            S          +      + +  L+ LGY + +A  A
Sbjct: 121 AERMILELRGKLAG---------SSAADTALFAAAAQDSRQDVVQTLMALGYSEKEAQAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
                K   +  +  + +R AL+ +
Sbjct: 172 ----CKSLPDDVEVGEGVRQALKLM 192


>gi|187925318|ref|YP_001896960.1| Holliday junction DNA helicase RuvA [Burkholderia phytofirmans
           PsJN]
 gi|229560013|sp|B2SYK1|RUVA_BURPP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|187716512|gb|ACD17736.1| Holliday junction DNA helicase RuvA [Burkholderia phytofirmans
           PsJN]
          Length = 193

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 107/206 (51%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++LID  GV Y +  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGVLLEKNPPHLLIDCNGVGYEVDVPMSTFYNLPSTGERVVLLTQMIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  + G+GAR+A+ VLS ++  EL +++ +Q++  + ++PGI  K 
Sbjct: 61  YGFGTAEERSTFRELLKISGIGARMALAVLSGMSVHELAQTVTMQDAARLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK                   A   S    A + ++AL+ LGY + +A TA
Sbjct: 121 AERLLLELKGKI-----------GADLGAMAGAASASDHASDILNALLALGYSEKEALTA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V +V          S+ I+LAL+A+S
Sbjct: 170 VKNV----PAGTGVSEGIKLALKALS 191


>gi|56707779|ref|YP_169675.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670250|ref|YP_666807.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           tularensis FSC198]
 gi|56604271|emb|CAG45291.1| holliday junction DNA helicase, subunit A [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110320583|emb|CAL08674.1| holliday junction DNA helicase, subunit A [Francisella tularensis
           subsp. tularensis FSC198]
          Length = 217

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 12/212 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +       +LIDV G+ Y ++ P+ T   LG I    +L+    +R+D  +L
Sbjct: 2   MISFIKGVLIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQVSLYTHFVVREDAQQL 61

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S +D++ F  L  V G+GAR A+ +LS + +  L+  I  ++  ++A +PGI  K 
Sbjct: 62  YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 121

Query: 121 ASRIMTELKGKAISLSSVVQQDM---------SCVNKEQAHICSMPSFAINAISALVNLG 171
           A R++ E+  K + +++ +             S   +    +    S    ++ AL+ LG
Sbjct: 122 AERLVVEIYDKLLKMANEIYAQTSGTTTTSQDSQAQQAPTSVVLANSIFNESVDALLALG 181

Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
           Y Q  A     S +    +    +++IR AL+
Sbjct: 182 YKQKDAEKMARSAM---GDATTVAEVIRKALQ 210


>gi|167627795|ref|YP_001678295.1| Holliday junction DNA helicase RuvA [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|167597796|gb|ABZ87794.1| Holliday junction DNA helicase, subunit A [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 218

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 12/212 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +       +LIDV G+ Y ++ P+ T   LG+I    +L+    +R+D  +L
Sbjct: 2   MISFIKGTLIEKDPTALLIDVNGLGYEVFVPMTTFYSLGEINSQVSLYTHFVVREDAQQL 61

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + +D++ F  L  V G+GAR A+ +LS + +T L+  I  ++  ++A +PGI  K 
Sbjct: 62  YGFKTKVDKKVFQELIKVSGIGARTAIAILSGMDSTTLLHCIENKDYGLLATVPGIGKKT 121

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKE---------QAHICSMPSFAINAISALVNLG 171
           A R++ E+  K + +++ +    S  +           Q       S    ++ AL+ LG
Sbjct: 122 AERLVVEIYDKLLKMANEIYSQSSNTSASINANSVQHAQTPAAISNSIFSESVDALLALG 181

Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
           Y Q  A   +   +         ++ IR AL+
Sbjct: 182 YKQKDAEKMIRGTI---GESTTAAEAIRKALQ 210


>gi|209965101|ref|YP_002298016.1| Holliday junction DNA helicase RuvA [Rhodospirillum centenum SW]
 gi|226698737|sp|B6ITI5|RUVA_RHOCS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|209958567|gb|ACI99203.1| holliday junction DNA helicase RuvA [Rhodospirillum centenum SW]
          Length = 206

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 76/206 (36%), Positives = 113/206 (54%), Gaps = 1/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K+ G ++    D+ ++DV GV Y++    RTL  L   G+  +L  E  + +D I+L
Sbjct: 1   MIAKLTGLLDSTGLDWAIVDVGGVGYLVSASARTLRRLAAPGEAVSLLTEMWVSEDNIQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R WF LL +VQGVGARVA+ +LS ++  EL  SI  Q+   + Q  G+  K+
Sbjct: 61  FGFADTEERDWFRLLTTVQGVGARVALNLLSALSPAELTNSIAAQDRTALCQADGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ ELK K  S  +      +      A          +A+SALVNLGY + +A TA
Sbjct: 121 AARILNELKEKVASFGAPAPAAATAGKG-GAAPAGPAGAVADAVSALVNLGYRRVEAFTA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V +V ++    A  S +IR  L+ +S
Sbjct: 180 VNAVAQRLGPEAGVSDLIRAGLKELS 205


>gi|222149652|ref|YP_002550609.1| Holliday junction DNA helicase RuvA [Agrobacterium vitis S4]
 gi|254766936|sp|B9JRI6|RUVA_AGRVS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|221736634|gb|ACM37597.1| Holliday junction DNA helicase RuvA [Agrobacterium vitis S4]
          Length = 205

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 94/206 (45%), Positives = 141/206 (68%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + +D+VL+DV GVCY+ +C  RTL+ LG  G+   LF+ET++R+DQ++L
Sbjct: 1   MIGKLKGTIDEIGDDHVLVDVHGVCYVAHCSSRTLARLGSPGEAIVLFIETYVREDQLKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+S L+R+WF LLQSVQGVGA+VA+ +L+ +T +EL  +I LQ+   IA+ PG+  K+
Sbjct: 61  FGFMSALEREWFNLLQSVQGVGAKVALAILATLTPSELANAIALQDKPAIARAPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++TELK KA + +      +    +    + S P    +A+SAL NLGY +DQA  A
Sbjct: 121 ALRLVTELKNKAPAFTGDAGSAIGLKQELGEGVASAP--VSDAVSALTNLGYSRDQAANA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + + LK     AD +++IRL L+ +S
Sbjct: 179 IAAALKNGGEGADSAKLIRLGLKELS 204


>gi|220921373|ref|YP_002496674.1| Holliday junction DNA helicase RuvA [Methylobacterium nodulans ORS
           2060]
 gi|254767374|sp|B8IM27|RUVA_METNO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|219945979|gb|ACL56371.1| Holliday junction DNA helicase RuvA [Methylobacterium nodulans ORS
           2060]
          Length = 205

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 88/206 (42%), Positives = 130/206 (63%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++   ED+V++DV GV Y+++C  RTL  L  +G+   L +ETH+R+D IRL
Sbjct: 1   MIGKLKGVVDSYGEDFVILDVHGVGYVVHCSARTLQRLPPVGEAADLAIETHVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF SD +R+WF LLQ+VQGVG RVA+GVLS +   +L  +I   +   IA+ PG+  ++
Sbjct: 61  YGFRSDAEREWFRLLQTVQGVGTRVALGVLSVLEPADLATAIATGDKGAIARAPGVGPRL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+R++ ELK KA + + V    +      +      P    +AISALVNLGY Q QA+ A
Sbjct: 121 AARLVAELKDKAPAFAPVDPALIRLAGAVEERTAPQP--VADAISALVNLGYPQIQASAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + L+     A+   +IRL LR ++
Sbjct: 179 VAAALQGAGEGAEAKTLIRLGLRELA 204


>gi|117923791|ref|YP_864408.1| Holliday junction DNA helicase RuvA [Magnetococcus sp. MC-1]
 gi|166230563|sp|A0L4V9|RUVA_MAGSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|117607547|gb|ABK43002.1| Holliday junction DNA helicase subunit RuvA [Magnetococcus sp.
           MC-1]
          Length = 204

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 106/206 (51%), Gaps = 4/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++KG++   + D+V++DV GV Y ++  + T + L  +G+ C L+  TH+R+D   L
Sbjct: 1   MIAQLKGSLAAKHPDHVVMDVHGVGYRVFISLATYNELPTVGEACLLYTVTHVREDAFLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+  R+ F LL SV G+G ++A+  LS  T   L+ ++  ++  ++  IPG+  K 
Sbjct: 61  YGFHSESQRKVFNLLTSVNGIGTKLALAALSSHTPEALLTALSREDLTLLCTIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+  ELK K  +L               A+            SAL+NLGY   Q   A
Sbjct: 121 AQRMAMELKDKLGALPMAAPTTAIGAATMAANPA---GLREEVASALLNLGYKPPQVDAA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +      I D S  ++ AL+ ++
Sbjct: 178 LAKLFSA-GEITDISVALKGALKLLA 202


>gi|91785164|ref|YP_560370.1| Holliday junction DNA helicase motor protein [Burkholderia
           xenovorans LB400]
 gi|296157351|ref|ZP_06840187.1| Holliday junction DNA helicase RuvA [Burkholderia sp. Ch1-1]
 gi|123358465|sp|Q13UC1|RUVA_BURXL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|91689118|gb|ABE32318.1| DNA recombination protein, RuvA [Burkholderia xenovorans LB400]
 gi|295892687|gb|EFG72469.1| Holliday junction DNA helicase RuvA [Burkholderia sp. Ch1-1]
          Length = 193

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 106/206 (51%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y +  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGVLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPSTGERVVLLTQMIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  + G+GAR+A+ VLS ++  EL +++ +Q++  + ++PGI  K 
Sbjct: 61  YGFGTAEERSTFRELLKISGIGARMALAVLSGMSVHELAQTVTMQDAARLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK                   A   S    A + ++AL+ LGY + +A  A
Sbjct: 121 AERLLLELKGKI-----------GADLGAMAGAASASDHASDILNALLALGYSEKEALAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V +V          S+ I+LAL+A+S
Sbjct: 170 VKNV----PAGTGVSEGIKLALKALS 191


>gi|85714394|ref|ZP_01045382.1| Holliday junction DNA helicase motor protein [Nitrobacter sp.
           Nb-311A]
 gi|85698841|gb|EAQ36710.1| Holliday junction DNA helicase motor protein [Nitrobacter sp.
           Nb-311A]
          Length = 205

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 93/206 (45%), Positives = 134/206 (65%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   EDYV++DV GV Y ++C  RTL  L   G+   L +ET++R+DQI+L
Sbjct: 1   MIGKLKGIIDSYGEDYVILDVGGVGYQVHCASRTLQALPSPGEAAVLSIETYVREDQIKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +D +R+WF LLQSVQGVGARVA+ VL  ++  +L  ++ L++   +A+ PG+  K+
Sbjct: 61  FGFRTDHEREWFRLLQSVQGVGARVALAVLGTLSPADLASAVALRDKASVARTPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA S ++V    +  V          P    +AISALVNLGYGQ QAT A
Sbjct: 121 AERIVTELKDKAPSFANVDPAVVHLVGAVDDRRAPGP--VTDAISALVNLGYGQPQATAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +  +     A+ +Q+IRL L+ ++
Sbjct: 179 IAAAARGAGENAETAQLIRLGLKELA 204


>gi|332292213|ref|YP_004430822.1| Holliday junction DNA helicase RuvA [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332170299|gb|AEE19554.1| Holliday junction DNA helicase RuvA [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 193

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 97/205 (47%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +      +V++D  GV Y I   + T   LG   +   L     +++D   L
Sbjct: 1   MITHLSGRLIEKNPTHVVLDCNGVGYFINISLHTFGRLGDS-EALKLHTHLQVKEDSHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+  ++R+ F LL SV G+GA  A  +LS +   ++ ++I   +   I  I GI  K 
Sbjct: 60  FGFVEVMEREIFRLLLSVSGIGASTARTMLSSLDPHQIKQAIASNDVATIQSIKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K + +  +  +                +    A+SAL  LG+ + QA   
Sbjct: 120 AQRVILDLKDKILKVYDMSSE----------SAVQSNTSKEEALSALETLGFARKQAEKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             +++K++ + A    II+ AL+ +
Sbjct: 170 CTAIVKEKPD-ASVETIIKEALKKL 193


>gi|296535992|ref|ZP_06898136.1| crossover junction ATP-dependent DNA helicase RuvA [Roseomonas
           cervicalis ATCC 49957]
 gi|296263678|gb|EFH10159.1| crossover junction ATP-dependent DNA helicase RuvA [Roseomonas
           cervicalis ATCC 49957]
          Length = 207

 Score =  169 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 113/206 (54%), Gaps = 1/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++  ++   + DV GV Y++ C  RTL+ L       +L +ET +R+D I L
Sbjct: 1   MIGKLTGKLDSQFDGGCIFDVNGVGYLVACSARTLAALPAPPGIGSLLIETVVREDAILL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R W+  L  +QGVG +VA+G+LS ++  +L  ++I  +   I + PG+  K+
Sbjct: 61  YGFADATERDWYRTLTGIQGVGPKVALGLLSTLSPADLARALIAGDKGAINRAPGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+R++ EL+ K  +L +        V    A +        +AISAL NLG+ + +A  A
Sbjct: 121 AARLVAELRDKVGALPTGPGLSAGTV-TIAAQLPPADRAQADAISALTNLGWKRPEAAGA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  V +K    A    +IR AL+ ++
Sbjct: 180 VQRVAEKLGEGAGLESLIREALKELA 205


>gi|317131997|ref|YP_004091311.1| Holliday junction DNA helicase RuvA [Ethanoligenens harbinense
           YUAN-3]
 gi|315469976|gb|ADU26580.1| Holliday junction DNA helicase RuvA [Ethanoligenens harbinense
           YUAN-3]
          Length = 199

 Score =  169 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 91/206 (44%), Gaps = 9/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +        +I   GV +       TL  L   G+   L+   ++R+D + L
Sbjct: 1   MIYSLKGTLTHTGPGMAVISCGGVGFKCLTTANTLGALPPPGEEAFLYTHLNVREDALDL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +   F +L  V GVG + A+ +LS  T  +   S+   ++K + + PGI  KI
Sbjct: 61  YGFGSEEELHCFRMLIGVSGVGPKAALSILSGTTPAQFAFSVASGDAKALTRAPGIGSKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K        +Q  +               A  A+SALV LGY   +A  A
Sbjct: 121 AQRIVLELKDKING-----EQAAANFTGGTPVPAVSGGSAAEAVSALVVLGYSGTEAQGA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V               IIR ALR ++
Sbjct: 176 VNRC----DPAQSVEDIIRQALRLLA 197


>gi|258593140|emb|CBE69451.1| Holliday junction DNA helicase ruvA [NC10 bacterium 'Dutch
           sediment']
          Length = 208

 Score =  169 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 104/206 (50%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +       ++IDV GV Y ++ P+ T   L +I     L + TH+R+D I+L
Sbjct: 1   MIAQLRGLLASKDPGQIVIDVNGVGYQVFVPLSTFYQLPEIQQEVHLRIYTHVREDAIQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F LL  V G+G R+A  +LS I   E + +++  ++  +  IPG+  K 
Sbjct: 61  YGFHAIEERITFELLTGVSGIGPRLAANILSGIAVEEFIPAVLEGDTARLKAIPGVGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K   +          V  ++           + +SAL+NLG  + +A+ A
Sbjct: 121 AERIILELKDKVTEVPCR-----GRVVVDRQPSPERDRTIEDVVSALLNLGCSRKEASAA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
             +      +  D   +++ AL+ +S
Sbjct: 176 AEAAHHTVGDGTDFETLVKQALKHLS 201


>gi|221064959|ref|ZP_03541064.1| Holliday junction DNA helicase RuvA [Comamonas testosteroni KF-1]
 gi|220709982|gb|EED65350.1| Holliday junction DNA helicase RuvA [Comamonas testosteroni KF-1]
          Length = 191

 Score =  169 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 16/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +       VL+D  GV Y +  P+ T   L   G    L     +R+D   L
Sbjct: 1   MIGKLTGTLLEKNPPEVLVDCAGVGYEVQVPMSTFYNLPANGAKVALLTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +RQ F  L  + G+G R+A+ VLS ++  +L +++  Q +  + ++PGI  K 
Sbjct: 61  FGFATARERQTFRELIKITGIGPRMALAVLSGMSIDDLADAVSQQQAGRLVKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK               +     + +  S   +   AL+ LGY   +A+ A
Sbjct: 121 AERLLLELKGKI------------GADTGAQSLFANNSEQNDIQQALMALGYSDKEASAA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +          S+ I+LAL+A+
Sbjct: 169 LKKL----PPEVGVSEGIKLALKAL 189


>gi|113866527|ref|YP_725016.1| Holliday junction DNA helicase RuvA [Ralstonia eutropha H16]
 gi|123033276|sp|Q0KEC3|RUVA_RALEH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|113525303|emb|CAJ91648.1| holliday junction resolvasome, DNA-binding subunit RuvA [Ralstonia
           eutropha H16]
          Length = 193

 Score =  169 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 103/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y +  P+ T   L  +G   TL  +  +R+D   L
Sbjct: 1   MIGRIAGTLIEKNPPHLLVDCHGVGYEVDVPMSTFYNLPAVGQPVTLLTQLIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  + G+GAR+A+ VLS ++  EL ++I LQ +  + +IPGI  K 
Sbjct: 61  YGFGTASERNTFRELIKITGIGARMALAVLSGMSVPELAQAITLQEAGRLTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+              ++  +           ++P  A++ ++AL+ LGY + +A  A
Sbjct: 121 AERL-----------LLELKGKLGAELGHVPGTPAVPDSAVDVLNALLALGYSEKEAAAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  V          S  I+LAL+A+S
Sbjct: 170 IKQV----PAGTGVSDGIKLALKALS 191


>gi|315634723|ref|ZP_07890007.1| crossover junction ATP-dependent DNA helicase RuvA [Aggregatibacter
           segnis ATCC 33393]
 gi|315476671|gb|EFU67419.1| crossover junction ATP-dependent DNA helicase RuvA [Aggregatibacter
           segnis ATCC 33393]
          Length = 204

 Score =  169 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 97/205 (47%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +       +L+DVQGV Y +  P+ +   L ++G   +LF    +R+D   L
Sbjct: 1   MIGHLTGILMEKQPPEILLDVQGVGYELLLPMTSFYHLPEVGKQTSLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  E   +I  +    + +IPG+  K 
Sbjct: 61  FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVDEFAYAIEREELSKLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELKGK   + ++        +        +    +  A++AL+ LGY    A  
Sbjct: 121 AERLLVELKGKFKGVKNNDFFMQADHLPSLSMETIATAEPSNEAVAALIALGYKPVDAEK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  V K         Q+IR AL+A
Sbjct: 181 MVKKVSK---PALSSEQLIREALKA 202


>gi|225568080|ref|ZP_03777105.1| hypothetical protein CLOHYLEM_04153 [Clostridium hylemonae DSM
           15053]
 gi|225163033|gb|EEG75652.1| hypothetical protein CLOHYLEM_04153 [Clostridium hylemonae DSM
           15053]
          Length = 205

 Score =  169 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 2/205 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  + ED V++DV GV Y IY   +++S L   G    +    ++++D ++L
Sbjct: 1   MISYIRGELAAVEEDKVIVDVGGVGYGIYMSGQSMSLLPSAGREVKIHTYLNVKEDAMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  D   F L+  V G+G +  +G+LS ++  +L  ++I  + K I   PGI  K 
Sbjct: 61  FGFLTRDDLDIFRLIIGVNGIGPKGGLGILSALSPDDLRFAVISNDVKAIQAAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK K      +        N   A   S+      A+ ALV LGYG  ++  A
Sbjct: 121 AEKLILELKDKLRIEDVLEHAAHGSENTSAAAAASVNEVQSEAVQALVALGYGSTESLKA 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V  +     +   +++ AL+ +
Sbjct: 181 VKQV--EIAEHMEVEDVLKSALKHM 203


>gi|86140746|ref|ZP_01059305.1| Holliday junction DNA helicase motor protein [Leeuwenhoekiella
           blandensis MED217]
 gi|85832688|gb|EAQ51137.1| Holliday junction DNA helicase motor protein [Leeuwenhoekiella
           blandensis MED217]
          Length = 193

 Score =  169 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 101/205 (49%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +       V+I+  GV Y +   + T S L + G+   L+   H+++D   L
Sbjct: 1   MITFLRGKLIEKNHTDVVIECHGVGYFVNISLHTFSLLPE-GESIMLYTYLHIKEDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F LL SV GVG  +A  +LS +  +++ ++I   + K I  + GI  K 
Sbjct: 60  YGFAHKSEREIFKLLISVSGVGTSIARTMLSSLEPSQVKQAIATGDVKTIQGVKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K + +  +           +    +  +    A+SAL  LG+ + QA   
Sbjct: 120 AQRVILDLKDKILKVYDI----------NEVSPIADNTNKEEALSALETLGFARKQAEKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             ++++ E   A    II+LAL+ +
Sbjct: 170 CTTIVRDEPQ-ASVETIIKLALKKL 193


>gi|253688206|ref|YP_003017396.1| Holliday junction DNA helicase RuvA [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|259495651|sp|C6DFF1|RUVA_PECCP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|251754784|gb|ACT12860.1| Holliday junction DNA helicase RuvA [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 205

 Score =  169 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+  GV Y ++ P+     L ++     +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPQVLIEANGVGYEVHMPMTCFYELPELNQEAIIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  L  V GVG ++A+ +LS ++AT+ V ++  +    + ++PG+  K 
Sbjct: 61  FGFNDKQERALFRELIKVNGVGPKLALAILSGMSATQFVSAVEREEIGALIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMS--CVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   LS  +   +S   +    +           A +ALV LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLSGDLFNPVSDIPLASPASAESRASDPEAEAAAALVALGYKPQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             +  + + E   AD   +IR ALRA
Sbjct: 181 RMISKIARPE---ADCETLIRDALRA 203


>gi|241668355|ref|ZP_04755933.1| Holliday junction DNA helicase RuvA [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254876888|ref|ZP_05249598.1| holliday junction DNA helicase ruvA [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254842909|gb|EET21323.1| holliday junction DNA helicase ruvA [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 217

 Score =  169 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 59/212 (27%), Positives = 105/212 (49%), Gaps = 12/212 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +       +LIDV G+ Y ++ P+ T   LG+I    +L+    +R+D  +L
Sbjct: 1   MISFIKGTLIEKDPTALLIDVNGLGYEVFVPMTTFYSLGEINSQISLYTHFVVREDAQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + +D++ F  L  V G+GAR A+ +LS + +T L+  I  ++  ++A +PGI  K 
Sbjct: 61  YGFKTKVDKKVFQELIKVSGIGARTAIAILSGMDSTTLLHCIENKDYGLLATVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVV---------QQDMSCVNKEQAHICSMPSFAINAISALVNLG 171
           A R++ E+  K + +++ +           + + V   Q       S    ++ AL+ LG
Sbjct: 121 AERLVVEIYDKLLKMANEIYSQSSSTSASVNANSVQHTQTPAAISNSIFSESVDALLALG 180

Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
           Y Q  A   +   +         ++ IR AL+
Sbjct: 181 YKQKDAEKMIRGTI---GESTTAAEAIRKALQ 209


>gi|208779418|ref|ZP_03246764.1| holliday junction DNA helicase RuvA [Francisella novicida FTG]
 gi|254372980|ref|ZP_04988469.1| hypothetical protein FTCG_00553 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570707|gb|EDN36361.1| hypothetical protein FTCG_00553 [Francisella novicida GA99-3549]
 gi|208745218|gb|EDZ91516.1| holliday junction DNA helicase RuvA [Francisella novicida FTG]
 gi|332678321|gb|AEE87450.1| Holliday junction DNA helicase RuvA [Francisella cf. novicida Fx1]
          Length = 216

 Score =  169 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 59/212 (27%), Positives = 103/212 (48%), Gaps = 12/212 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +       +LIDV G+ Y ++ P+ T   LG I    +L+    +R+D  +L
Sbjct: 1   MISFIKGVLIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQVSLYTHFVVREDAQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S +D++ F  L  V G+GAR A+ +LS + +  L+  I  ++  ++A +PGI  K 
Sbjct: 61  YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDM---------SCVNKEQAHICSMPSFAINAISALVNLG 171
           A R++ E+  K + +++ +             S   +         S    ++ AL+ LG
Sbjct: 121 AERLVVEIYDKLLKMANEIYAQTSGTTTTSQDSQAQQAPTSAVLANSIFNESVDALLALG 180

Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
           Y Q  A     S +    +    +++IR AL+
Sbjct: 181 YKQKDAEKMARSAM---GDATTAAEVIRKALQ 209


>gi|33152771|ref|NP_874124.1| Holliday junction DNA helicase motor protein [Haemophilus ducreyi
           35000HP]
 gi|38372436|sp|Q7VKV4|RUVA_HAEDU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|33148995|gb|AAP96513.1| Holliday junction DNA helicase RuvA [Haemophilus ducreyi 35000HP]
          Length = 201

 Score =  169 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 61/204 (29%), Positives = 97/204 (47%), Gaps = 5/204 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G I       ++IDVQG+ Y +  P+ +   L ++G+  T+F    +R+D   L
Sbjct: 1   MIGRLYGKIIEKQPPEMVIDVQGIGYEVLLPMTSFYHLPQVGEEATIFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  +   ++  +    + +IPG+  K 
Sbjct: 61  FGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVVQFANAVENEELVKLTKIPGVGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK   ++              A      S    A  AL+ LGY    A   
Sbjct: 121 AERLLVELKGKFKGIAQTDFFVEHSHETMVATYEIDAS--EEARDALLALGYKLTDAEKM 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           +  V    K+ A   Q+IR AL+A
Sbjct: 179 IKKV---HKSGATSEQLIRDALKA 199


>gi|33598084|ref|NP_885727.1| Holliday junction DNA helicase motor protein [Bordetella
           parapertussis 12822]
 gi|44888435|sp|Q7W4T9|RUVA_BORPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|33566642|emb|CAE38852.1| holliday junction DNA helicase [Bordetella parapertussis]
          Length = 190

 Score =  169 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 67/205 (32%), Positives = 103/205 (50%), Gaps = 17/205 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       V +DV GV Y I  P+ TL  L + G   TLF    +R+D   L
Sbjct: 1   MIGRITGTLIEKSPPVVCVDVNGVGYEIDVPMSTLYALPETGARVTLFTHLVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L  V G+GAR A+ VLS ++  EL ++I LQ +  + ++PGI  K 
Sbjct: 61  YGFGSSAERSTFRELIKVTGIGARTALAVLSGLSVAELSQAITLQETGRLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++GK  +                A   +      + ++AL+ LGY   ++  A
Sbjct: 121 AERLLLEMRGKLGA-------------DIGATPHAAGGHQSDILNALLALGYSDKESQAA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +        D S+ IRLAL+A+
Sbjct: 168 LKKL----PEGVDVSEGIRLALKAL 188


>gi|291612984|ref|YP_003523141.1| Holliday junction DNA helicase RuvA [Sideroxydans lithotrophicus
           ES-1]
 gi|291583096|gb|ADE10754.1| Holliday junction DNA helicase RuvA [Sideroxydans lithotrophicus
           ES-1]
          Length = 192

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 107/206 (51%), Gaps = 16/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +++DVQGV Y +  P+ T   L  + +   L  +  +R+D   L
Sbjct: 1   MIGRLSGTLLEKNPPQIVLDVQGVGYEVDVPMSTFYNLPALHEKVVLHTQLIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  +R  F  L  + GVG ++A+ VLS ++  +L  ++  +++  + +IPG+  K 
Sbjct: 61  FGFLTHEERVAFRQLLKISGVGPKLALSVLSGLSLADLALAVANKDASRLTRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK     +             A   S+PS + + ++AL+ LGY + +A  A
Sbjct: 121 AERLLLELQGKFAVAGA------------GAMAGSVPSSSSDIVNALLGLGYNEKEADWA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
              + K+    A  +  IR AL+ +S
Sbjct: 169 AKQLPKE----AGVADGIRQALKLLS 190


>gi|226945719|ref|YP_002800792.1| Holliday junction DNA helicase RuvA [Azotobacter vinelandii DJ]
 gi|226720646|gb|ACO79817.1| holliday junction DNA helicase RuvA [Azotobacter vinelandii DJ]
          Length = 204

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 108/205 (52%), Gaps = 5/205 (2%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           IG+++G +      ++L++  GV Y +  P+ TL  L  + +  TL     +R+D   L+
Sbjct: 5   IGRLRGILVEKQPPHLLVEANGVGYEVEVPMTTLYRLPSLNEPVTLHTHLVVREDAHLLY 64

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +   + K + ++PG+  K A
Sbjct: 65  GFCERRERELFRELIRLNGVGPKLALALMSSLELDELVRCVQAGDIKALTRVPGVGKKTA 124

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
            R++ ELK +  +  S+    ++ +  E      + S   +A+SALV LG+   +A+ AV
Sbjct: 125 ERLLIELKDRFKAWESL--PTVASLTLESNPDIGIASAESDALSALVALGFKPQEASRAV 182

Query: 182 VSVLKKEKNIADDSQIIRLALRAIS 206
            +V ++        ++IR ALR ++
Sbjct: 183 AAVQEE---GLSSEELIRRALRGMA 204


>gi|134302038|ref|YP_001122007.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|166230553|sp|A4IY85|RUVA_FRATW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|134049815|gb|ABO46886.1| holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 216

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 12/212 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +       +LIDV G+ Y ++ P+ T   LG I    +L+    +R+D  +L
Sbjct: 1   MISFIKGVLIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQVSLYTHFIVREDAQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S +D++ F  L  V G+GAR A+ +LS + +  L+  I  ++  ++A +PGI  K 
Sbjct: 61  YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDM---------SCVNKEQAHICSMPSFAINAISALVNLG 171
           A R++ E+  K + +++ +             S   +    +    S    ++ AL+ LG
Sbjct: 121 AERLVVEIYDKLLKMANEIYAQTSGTTTTSQDSQAQQAPTSVVLANSIFNESVDALLALG 180

Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
           Y Q  A     S +    +    +++IR AL+
Sbjct: 181 YKQKDAEKMARSAM---GDATTAAEVIRKALQ 209


>gi|307130888|ref|YP_003882904.1| component of RuvABC resolvasome, regulatory subunit [Dickeya
           dadantii 3937]
 gi|306528417|gb|ADM98347.1| component of RuvABC resolvasome, regulatory subunit [Dickeya
           dadantii 3937]
          Length = 205

 Score =  168 bits (426), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 100/206 (48%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLI+  GV Y ++ P+     L  +G    +F    +R+D   L
Sbjct: 1   MIGRLRGIVLEKQPPLVLIEASGVGYEVHMPMTCFYELPDLGQEAVIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L  V GVG ++A+ +LS ++A + V ++  Q    + ++PG+  K 
Sbjct: 61  FGFNNKQERSLFRELIKVNGVGPKLALAILSGMSAQQFVSAVERQEINALVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAH--ICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   L+  +    S +   +A             A +ALV LGY   +A 
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNAASDIALPEAAGKAEPEADPQAEAEAALVALGYKPQEAG 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             V  V +     AD   +IR ALRA
Sbjct: 181 RMVSKVAR---PGADCETLIREALRA 203


>gi|85858586|ref|YP_460788.1| holliday junction DNA helicase [Syntrophus aciditrophicus SB]
 gi|123725225|sp|Q2LRA9|RUVA_SYNAS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|85721677|gb|ABC76620.1| holliday junction DNA helicase [Syntrophus aciditrophicus SB]
          Length = 204

 Score =  168 bits (426), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 107/206 (51%), Gaps = 3/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +I+G +       V+ID  G+ Y +  P+ T   L  +G   +LFV T  +QD I L
Sbjct: 1   MIAQIRGKLILKTVSMVIIDNHGIGYEVMIPLSTYYELPDVGSEVSLFVYTFFKQDSILL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF ++ ++Q F L+ SV G+G R+A+ VLS I ++EL+ +I   +   + ++PG+  K+
Sbjct: 61  VGFCTENEKQLFKLMISVSGIGPRLAVNVLSGINSSELIHAIANNDLNRLLKVPGLGRKM 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K    +S  Q         +           +AISAL+NLGY    A  A
Sbjct: 121 AQRVILELRDKVSGWTSKEQITF---INNKKDAIDQSVMEEDAISALINLGYKSQAAKDA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  V+ +         I++ AL+ ++
Sbjct: 178 IDRVISEGGENKSLDVILKKALKVLA 203


>gi|307944538|ref|ZP_07659878.1| holliday junction DNA helicase RuvA [Roseibium sp. TrichSKD4]
 gi|307772287|gb|EFO31508.1| holliday junction DNA helicase RuvA [Roseibium sp. TrichSKD4]
          Length = 205

 Score =  168 bits (426), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 86/206 (41%), Positives = 127/206 (61%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+    D+V+IDV GV Y ++CP R L  L + G+   LF+ET +R+D IRL
Sbjct: 1   MIGKLKGTIDSYGGDHVIIDVHGVGYQVHCPSRILQSLPRAGEAAVLFIETVVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF  + +R+WF LL +VQGVGA+VA+G+L  + A+E+  +I L +   I + PG+  ++
Sbjct: 61  FGFGDEAEREWFRLLTTVQGVGAKVALGILGILKASEIANAIALSDKATITRAPGVGKRV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI++ELK KA S +SV    ++        + + P     A+SAL NLGYGQ QA  A
Sbjct: 121 AERILSELKDKAPSYASVDDATVAVSQSVSDDVAARP--VAEAVSALTNLGYGQPQAAAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V   ++     A    +IRL L+ ++
Sbjct: 179 VARAVQSAGEDATTETLIRLGLKELA 204


>gi|125972705|ref|YP_001036615.1| Holliday junction DNA helicase subunit RuvA [Clostridium
           thermocellum ATCC 27405]
 gi|256004864|ref|ZP_05429838.1| Holliday junction DNA helicase RuvA [Clostridium thermocellum DSM
           2360]
 gi|281416893|ref|ZP_06247913.1| Holliday junction DNA helicase RuvA [Clostridium thermocellum JW20]
 gi|166230544|sp|A3DBU3|RUVA_CLOTH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|125712930|gb|ABN51422.1| Holliday junction DNA helicase subunit RuvA [Clostridium
           thermocellum ATCC 27405]
 gi|255991174|gb|EEU01282.1| Holliday junction DNA helicase RuvA [Clostridium thermocellum DSM
           2360]
 gi|281408295|gb|EFB38553.1| Holliday junction DNA helicase RuvA [Clostridium thermocellum JW20]
 gi|316941059|gb|ADU75093.1| Holliday junction DNA helicase RuvA [Clostridium thermocellum DSM
           1313]
          Length = 202

 Score =  168 bits (426), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 108/206 (52%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I+G +E    D+++++  GV Y I+  + T+S +G+IG    ++   ++R+D I L
Sbjct: 1   MFAYIRGRLEYKNNDFLIVESNGVGYRIFTSLSTISGIGEIGQEVKVYTYLYVREDVISL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +   F LL SV GVG + A+ VLS I+ +    ++I  + K + +  GI  KI
Sbjct: 61  YGFLTQEELNVFELLISVSGVGPKAAVSVLSAISPSRFSLAVITDDVKTLTKAQGIGKKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K                K    + +  S    A+SAL+ LGY   +A  A
Sbjct: 121 AQRIILELKDKIKKEQLTEYAQSEEGGKV---LDTDSSKMAEAVSALMVLGYSPAEANKA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V +V +++    D   II+ AL+ ++
Sbjct: 178 VSAVYRED---MDIETIIKNALKGLA 200


>gi|325981222|ref|YP_004293624.1| Holliday junction ATP-dependent DNA helicase ruvA [Nitrosomonas sp.
           AL212]
 gi|325530741|gb|ADZ25462.1| Holliday junction ATP-dependent DNA helicase ruvA [Nitrosomonas sp.
           AL212]
          Length = 193

 Score =  168 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 107/206 (51%), Gaps = 16/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +   +   VL++VQGV Y I  P+ T   L  IG   TL+    +R+D   L
Sbjct: 1   MIGRLTGKLLEKHPPQVLLEVQGVGYEIDVPMSTFYDLPTIGVEITLYTHLVIREDMHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +RQ F  L  + G+GAR A+ +LS ++  +L  ++ +Q+S  + ++PGI  K 
Sbjct: 61  FGFATEPERQTFRQLIKISGIGARTALALLSGLSVADLHHAVSIQDSARLVKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K         + +S  ++             + ++AL++LGY   +A+ A
Sbjct: 121 AERLLLELRDKLDLALLSSDRVLSSTSE------------SDILNALLSLGYSDREASWA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +          S  IR AL+ +S
Sbjct: 169 IKQISSNAM----VSDGIRQALQLLS 190


>gi|170746561|ref|YP_001752821.1| Holliday junction DNA helicase RuvA [Methylobacterium radiotolerans
           JCM 2831]
 gi|229560103|sp|B1M6A3|RUVA_METRJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|170653083|gb|ACB22138.1| Holliday junction DNA helicase RuvA [Methylobacterium radiotolerans
           JCM 2831]
          Length = 205

 Score =  168 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 88/206 (42%), Positives = 130/206 (63%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++   ED+V++DV GV YI++C  RTL  + K+G+   L +ETH+R+D IRL
Sbjct: 1   MIGKLKGVVDSFGEDFVILDVSGVGYIVHCSARTLQRMPKVGEPAELSIETHVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF SD +R+WF LLQ+VQGVGARVA+GVLS +    L  +I   +   I++ PG+  ++
Sbjct: 61  YGFRSDAEREWFRLLQTVQGVGARVALGVLSVLEPEALASAIATGDKGSISRAPGVGPRL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+R+  ELK KA + + V    ++     +      P    +A+SALVNLGY Q QA  A
Sbjct: 121 AARLAAELKDKAPAFAPVDPALVALAGAVEEGAAPQP--VADAVSALVNLGYPQVQAAAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + + LK     A+   +IRL LR ++
Sbjct: 179 IAAALKGAGEGAEAKVLIRLGLRELA 204


>gi|187931869|ref|YP_001891854.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|229560033|sp|B2SH67|RUVA_FRATM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|187712778|gb|ACD31075.1| holliday junction DNA helicase, subunit A [Francisella tularensis
           subsp. mediasiatica FSC147]
          Length = 216

 Score =  168 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 12/212 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +       +LIDV G+ Y ++ P+ T   LG I    +L+    +R+D  +L
Sbjct: 1   MISFIKGVLIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQVSLYTHFVVREDAQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S +D++ F  L  V G+GAR A+ +LS + +  L+  I  ++  ++A +PGI  K 
Sbjct: 61  YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDM---------SCVNKEQAHICSMPSFAINAISALVNLG 171
           A R++ E+  K + +++ +             S   +    +    S    ++ AL+ LG
Sbjct: 121 AERLVIEIYDKLLKMANEIYAQTSGTTTTSQDSQAQQAPTSVVLANSIFNESVDALLALG 180

Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
           Y Q  A     S +    +    +++IR AL+
Sbjct: 181 YKQKDAEKMARSAM---GDATTAAEVIRKALQ 209


>gi|89256283|ref|YP_513645.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314735|ref|YP_763458.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156502349|ref|YP_001428414.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|167011087|ref|ZP_02276018.1| holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254367618|ref|ZP_04983639.1| holliday junction DNA helicase subunit A [Francisella tularensis
           subsp. holarctica 257]
 gi|254369266|ref|ZP_04985278.1| holliday junction DNA helicase [Francisella tularensis subsp.
           holarctica FSC022]
 gi|290953118|ref|ZP_06557739.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313646|ref|ZP_06804230.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           holarctica URFT1]
 gi|122325244|sp|Q0BM63|RUVA_FRATO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|123094517|sp|Q2A3Q7|RUVA_FRATH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230551|sp|A7NBV5|RUVA_FRATF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|89144114|emb|CAJ79371.1| holliday junction DNA helicase, subunit A [Francisella tularensis
           subsp. holarctica LVS]
 gi|115129634|gb|ABI82821.1| crossover junction endodeoxyribonuclease [Francisella tularensis
           subsp. holarctica OSU18]
 gi|134253429|gb|EBA52523.1| holliday junction DNA helicase subunit A [Francisella tularensis
           subsp. holarctica 257]
 gi|156252952|gb|ABU61458.1| holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|157122216|gb|EDO66356.1| holliday junction DNA helicase [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 216

 Score =  168 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 12/212 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +       +LIDV G+ Y ++ P+ T   LG I    +L+    +R+D  +L
Sbjct: 1   MISFIKGVLIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQVSLYTHFVVREDAQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S +D++ F  L  V G+GAR A+ +LS + +  L+  I  ++  ++A +PGI  K 
Sbjct: 61  YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDM---------SCVNKEQAHICSMPSFAINAISALVNLG 171
           A R++ E+  K + +++ +             S   +    +    S    ++ AL+ LG
Sbjct: 121 AERLVVEIYDKLLKMANEIYAQTSGTTTTSQDSQAQQAPTSVVLANSIFNESVDALLALG 180

Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
           Y Q  A     S +    +    +++IR AL+
Sbjct: 181 YKQKDAEKMARSAM---GDATTAAEVIRKALQ 209


>gi|154252563|ref|YP_001413387.1| Holliday junction DNA helicase RuvA [Parvibaculum lavamentivorans
           DS-1]
 gi|171769603|sp|A7HUZ7|RUVA_PARL1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|154156513|gb|ABS63730.1| Holliday junction DNA helicase RuvA [Parvibaculum lavamentivorans
           DS-1]
          Length = 205

 Score =  168 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 86/206 (41%), Positives = 121/206 (58%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK++G ++   ED+ +IDV GV Y + C  RTL  L   G   TL +ET +  + IRL
Sbjct: 1   MIGKLRGIVDSTGEDWAVIDVGGVGYHVTCSSRTLRNLPPAGGAVTLSIETKVSDEAIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF +D +R+WF LL +VQGVG RVA+GVL  +   +L  +I L + K ++  PG+  K+
Sbjct: 61  IGFTTDSEREWFRLLLAVQGVGTRVALGVLGTLAPADLARAIALDDKKAVSAAPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+TELK K      +       VN E     S P  A +A+SALVNLGY Q QA  A
Sbjct: 121 AARIVTELKDKVPDSMGLSAALEVGVNGEAVSSVSAP--ARDAVSALVNLGYPQAQAMGA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V +  K+  + A   Q+IR  L+ ++
Sbjct: 179 VAAAAKRLDDAASTEQLIRHGLKELA 204


>gi|227329529|ref|ZP_03833553.1| Holliday junction DNA helicase RuvA [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 205

 Score =  168 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 101/206 (49%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+  GV Y ++ P+     L ++     +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPQVLIEANGVGYEVHMPMTCFYELPELNQEAVIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  L  V GVG ++A+ +LS ++AT+ V ++  +    + ++PG+  K 
Sbjct: 61  FGFNDKQERALFRELIKVNGVGPKLALAILSGMSATQFVSAVEREEIGALIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMS--CVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   LS  +   +S   +         +      A +ALV LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLSGDLFNPVSDIPLASPATADSRVGEPEAEAAAALVALGYKPQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             +  + +     AD   +IR ALRA
Sbjct: 181 RMISKIAR---PDADCETLIRDALRA 203


>gi|188591242|ref|YP_001795842.1| holliday junction DNA helicase ruva [Cupriavidus taiwanensis LMG
           19424]
 gi|229560026|sp|B2AH73|RUVA_CUPTR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|170938136|emb|CAP63122.1| subunit A of RuvABC Holliday junction resolvasome, regulatory
           subunit [Cupriavidus taiwanensis LMG 19424]
          Length = 193

 Score =  168 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 104/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L  +G   TL  +  +R+D   L
Sbjct: 1   MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPAVGQPVTLLTQLIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L  + G+GAR+A+ VLS ++  EL ++I LQ +  + +IPGI  K 
Sbjct: 61  YGFGSAAERNTFRELIKITGIGARMALAVLSGMSVPELAQAITLQEAGRLTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+              ++  +           ++P  A++ ++AL+ LGY + +A  A
Sbjct: 121 AERL-----------LLELKGKLGAELGHAPGTPAVPDSAVDVLNALLALGYSEKEAAAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  V          S+ I+LAL+A+S
Sbjct: 170 IKQV----PAGTGVSEGIKLALKALS 191


>gi|238788520|ref|ZP_04632313.1| Holliday junction DNA helicase RuvA [Yersinia frederiksenii ATCC
           33641]
 gi|238723433|gb|EEQ15080.1| Holliday junction DNA helicase RuvA [Yersinia frederiksenii ATCC
           33641]
          Length = 194

 Score =  168 bits (425), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 54/194 (27%), Positives = 93/194 (47%), Gaps = 3/194 (1%)

Query: 11  GLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQ 70
                 VL++  GV Y +  P+     L  +G    +F +  +R+D   L+GF    +R 
Sbjct: 2   EKQPPLVLLETNGVGYEVQLPMTCFYELPDLGQEAIIFTQFVVREDAQLLYGFNDKQERA 61

Query: 71  WFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
            F  L  V GVG ++A+ +LS ++A + V ++  ++   + ++PG+  K A R++ E+K 
Sbjct: 62  LFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKTAERLVVEMKD 121

Query: 131 KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKN 190
           +   L+  +  +   +    A           A+SALV LGY   +A+  V  + K    
Sbjct: 122 RFKGLNGDLFNNTGDIQLPSASQTPDADIEAEAVSALVALGYKPQEASRLVSKIAK---P 178

Query: 191 IADDSQIIRLALRA 204
            AD   +IR ALRA
Sbjct: 179 GADCETLIRDALRA 192


>gi|296447311|ref|ZP_06889239.1| Holliday junction DNA helicase RuvA [Methylosinus trichosporium
           OB3b]
 gi|296255176|gb|EFH02275.1| Holliday junction DNA helicase RuvA [Methylosinus trichosporium
           OB3b]
          Length = 204

 Score =  168 bits (425), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 90/206 (43%), Positives = 133/206 (64%), Gaps = 3/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++   +D+V++DVQGV Y+++C  RTL  L + G+  +L +ET +R+D IRL
Sbjct: 1   MIGKLKGVVDSYGDDFVILDVQGVGYVVHCSTRTLQKLPRAGEAASLAIETQVREDSIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +D +R WF LLQSVQGVGA+VA+ +LS +   EL  +I  Q+  ++A+  G+  K+
Sbjct: 61  FGFSADAERDWFRLLQSVQGVGAKVALAILSILGPGELASAIAGQDKAMVARASGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ ELK KA + +++   D +          S P  A +AISALVNLGYG+ QA  A
Sbjct: 121 AARIVAELKDKAPAFAAL---DPALARLSGETEASAPQAAQDAISALVNLGYGRPQAAAA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + LK     AD   +IR  L+ ++
Sbjct: 178 VAASLKALGESADTGALIRRGLKELA 203


>gi|167856020|ref|ZP_02478765.1| holliday junction ATP-dependent DNA helicase RuvA [Haemophilus
           parasuis 29755]
 gi|167852859|gb|EDS24128.1| holliday junction ATP-dependent DNA helicase RuvA [Haemophilus
           parasuis 29755]
          Length = 202

 Score =  168 bits (425), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 61/203 (30%), Positives = 100/203 (49%), Gaps = 4/203 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G I       +++DVQGV Y +  P+ +   L  + +   +F    +R+D   L
Sbjct: 1   MIGRLCGRIIEKSPPSMVLDVQGVGYEVLMPMTSFYNLPDLNEDTMIFTHLVIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+   +R  F  L    GVG ++A+ +LS ++ +E + +I  +    + +IPGI  K 
Sbjct: 61  FGFVQKQERMLFRELIKTNGVGPKLALAILSAMSVSEFMSAIEQEELAKLIKIPGIGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK  +L       +       +     P     AI AL++LGY    A   
Sbjct: 121 AERLLVELKGKFSTLFHHEISILQPSGNLLSMESMSP--VNEAIDALISLGYKAADAEKM 178

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  V +K  + +   Q+IR AL+
Sbjct: 179 VKKVNRK--SESTSEQLIREALK 199


>gi|68248920|ref|YP_248032.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae
           86-028NP]
 gi|81336669|sp|Q4QNM5|RUVA_HAEI8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|68057119|gb|AAX87372.1| holliday junction DNA helicase RuvA [Haemophilus influenzae
           86-028NP]
          Length = 204

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L++VQGV Y +  P+ +   L +IG   TLF    +R+D   L
Sbjct: 1   MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  +   +I  +    + +IPG+  K 
Sbjct: 61  FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELKGK   +  S    + + +    +      S +  AISAL+ LGY   +A  
Sbjct: 121 AERLLVELKGKFKGIKQSDFFVESTHIPLSPSIESHSESSSDEAISALIALGYKPAEAEK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  V K E       Q+IR AL+A
Sbjct: 181 MVKRVAKPE---LTSEQVIREALKA 202


>gi|145634688|ref|ZP_01790397.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae PittAA]
 gi|145638774|ref|ZP_01794383.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae PittII]
 gi|148827465|ref|YP_001292218.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae PittGG]
 gi|260582589|ref|ZP_05850379.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae NT127]
 gi|166230557|sp|A5UGC9|RUVA_HAEIG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|145268233|gb|EDK08228.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae PittAA]
 gi|145272369|gb|EDK12277.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae PittII]
 gi|148718707|gb|ABQ99834.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae PittGG]
 gi|260094400|gb|EEW78298.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae NT127]
 gi|301169022|emb|CBW28619.1| component of RuvABC resolvasome, regulatory subunit [Haemophilus
           influenzae 10810]
 gi|309750264|gb|ADO80248.1| Holliday junction resolvasome, DNA-binding subunit [Haemophilus
           influenzae R2866]
          Length = 204

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L++VQGV Y +  P+ +   L +IG   TLF    +R+D   L
Sbjct: 1   MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  +   +I  +    + +IPG+  K 
Sbjct: 61  FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELKGK   +  S    + + +    +      S +  AISAL+ LGY   +A  
Sbjct: 121 AERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESSSDEAISALIALGYKPAEAEK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  V K E       Q+IR AL+A
Sbjct: 181 MVKRVAKPE---LTSEQVIREALKA 202


>gi|167759024|ref|ZP_02431151.1| hypothetical protein CLOSCI_01371 [Clostridium scindens ATCC 35704]
 gi|167663431|gb|EDS07561.1| hypothetical protein CLOSCI_01371 [Clostridium scindens ATCC 35704]
          Length = 203

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 106/205 (51%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +E L ED V+IDV G+ Y ++   + +  L  IG    +    ++++D ++L
Sbjct: 1   MISYLKGTLEALEEDKVVIDVGGIGYGVFMSGQAMGLLPSIGKEVKIHTYLNIKEDAMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  D + F LL  V G+G +  +GVLS ++  EL  +++  + K I Q PGI  K 
Sbjct: 61  YGFLTKDDLEVFKLLIGVNGIGPKGGLGVLSALSPDELRFAVMSNDVKAICQAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ EL+ K         + ++  N+ Q           NA+ AL  LGYG  +A  A
Sbjct: 121 AEKLILELRDKLR--LEDALEHLASENEVQGAAAYQGEVQSNAVQALAALGYGSTEALKA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V        +  ++++ AL+ +
Sbjct: 179 VRQV--DITENMEVEEVLKQALKLM 201


>gi|255020124|ref|ZP_05292194.1| Holliday junction DNA helicase RuvA [Acidithiobacillus caldus ATCC
           51756]
 gi|254970417|gb|EET27909.1| Holliday junction DNA helicase RuvA [Acidithiobacillus caldus ATCC
           51756]
          Length = 191

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 49/206 (23%), Positives = 88/206 (42%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G+I   +  ++ ++V G+ Y +  P+     L   G   TL     +R+D   L
Sbjct: 1   MIAFLRGHILERHPPWLWLEVNGIGYELEMPLSAFFQLPADGAALTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V G+G +VA+  LS +   +L  ++   + + +  IPG+  + 
Sbjct: 61  YGFRERAERDIFRQLIKVSGIGGKVALACLSGMDVEQLRAALRDGDVRRLTAIPGVGART 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K               +               AI+AL +LGY    A+ A
Sbjct: 121 AERLIVELRDKL-------------ASGSVGATPVAGDPRQEAIAALQSLGYKATDASQA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
               L          ++IR  L+ ++
Sbjct: 168 ----LAGLDPGLSVEELIRQGLKTLA 189


>gi|187479251|ref|YP_787276.1| Holliday junction DNA helicase RuvA [Bordetella avium 197N]
 gi|123765963|sp|Q2KVY6|RUVA_BORA1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|115423838|emb|CAJ50389.1| holliday junction DNA helicase [Bordetella avium 197N]
          Length = 190

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 67/206 (32%), Positives = 103/206 (50%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       V +DV G+ Y I  P+ TL  L   G   TLF    +R+D   L
Sbjct: 1   MIGRITGTLIEKTPPVVYVDVNGIGYEIDVPMSTLYALPDTGARVTLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+GAR A+ VLS ++  EL ++I LQ S  + ++PGI  K 
Sbjct: 61  YGFGTASERAAFRELVKVSGIGARTALAVLSGMSVAELAQAITLQESGRLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++GK  +                A   ++P    + ++AL+ LGY + ++  A
Sbjct: 121 AERLLLEMRGKLGA-------------DIGATPHAVPDSQSDILNALLALGYSEKESLAA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
               LK        S  IR AL+A++
Sbjct: 168 ----LKTLPEGLGVSDGIRQALKALA 189


>gi|254374431|ref|ZP_04989913.1| holliday junction DNA helicase RuvA [Francisella novicida
           GA99-3548]
 gi|151572151|gb|EDN37805.1| holliday junction DNA helicase RuvA [Francisella novicida
           GA99-3548]
          Length = 216

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 59/212 (27%), Positives = 103/212 (48%), Gaps = 12/212 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +       +LIDV G+ Y ++ P+ T   LG I    +L+    +R+D  +L
Sbjct: 1   MISFIKGALIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQVSLYTHFVVREDAQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S +D++ F  L  V G+GAR A+ +LS + +  L+  I  ++  ++A +PGI  K 
Sbjct: 61  YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDM---------SCVNKEQAHICSMPSFAINAISALVNLG 171
           A R++ E+  K + +++ +             S   +         S    ++ AL+ LG
Sbjct: 121 AERLVVEIYDKLLKMANEIYAQTSGTTTTSQDSQAQQAPTSAVLANSIFNESVDALLALG 180

Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
           Y Q  A     S +    +    +++IR AL+
Sbjct: 181 YKQKDAEKMARSAM---GDATTAAEVIRKALQ 209


>gi|145631439|ref|ZP_01787209.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae R3021]
 gi|144982976|gb|EDJ90485.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae R3021]
          Length = 204

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L++VQGV Y +  P+ +   L +IG   TLF    +R+D   L
Sbjct: 1   MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHFVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  +   +I  +    + +IPG+  K 
Sbjct: 61  FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELKGK   +  S    + + +    +      S +  AISAL+ LGY   +A  
Sbjct: 121 AERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESSSDEAISALIALGYKPAEAEK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  V K E       Q+IR AL+A
Sbjct: 181 MVKRVAKPE---LTSEQVIREALKA 202


>gi|330991872|ref|ZP_08315821.1| Holliday junction ATP-dependent DNA helicase ruvA
           [Gluconacetobacter sp. SXCC-1]
 gi|329760893|gb|EGG77388.1| Holliday junction ATP-dependent DNA helicase ruvA
           [Gluconacetobacter sp. SXCC-1]
          Length = 207

 Score =  167 bits (424), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 114/206 (55%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +  +  D  +IDV GV Y++    RTL+ L +  +   + VET +R+D I L
Sbjct: 1   MIAQLRGLLAQVEADRCVIDVGGVGYLVQASSRTLAVLPQPPELALVLVETVVREDAILL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R WF LL +VQGVGA+VA+ +LS +   EL+ +I   +  ++ +  G+  ++
Sbjct: 61  YGFAEASERAWFRLLTTVQGVGAKVALAILSVLPPPELMMAIGSGDKTMLTRAGGVGARL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TEL+ K   + + +      V        +  S A +A+ AL  LG+ + +A   
Sbjct: 121 AQRIVTELRDKCEGMPTGMVATGGGVPGVTITRPTAHSVAADAVLALSGLGFRRGEAQPV 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  V+++ +   D   +IR AL+ ++
Sbjct: 181 VERVIERHEGQVDLDIVIRDALKELA 206


>gi|319775819|ref|YP_004138307.1| holliday junction DNA helicase RuvA [Haemophilus influenzae F3047]
 gi|317450410|emb|CBY86626.1| holliday junction DNA helicase RuvA [Haemophilus influenzae F3047]
          Length = 204

 Score =  167 bits (424), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 104/205 (50%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L++VQGV Y +  P+ +   L +IG   TLF    +R+D   L
Sbjct: 1   MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  +   +I  +    + +IPG+  K 
Sbjct: 61  FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELKGK   +  S    + + +    +      S +  AISAL+ LGY   +A  
Sbjct: 121 AERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESSSDEAISALIALGYKPAEAEK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  V+K E       Q+IR AL+A
Sbjct: 181 MVKRVVKPE---LTSEQVIREALKA 202


>gi|118497616|ref|YP_898666.1| holliday junction DNA helicase, subunit A [Francisella tularensis
           subsp. novicida U112]
 gi|195536317|ref|ZP_03079324.1| holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           novicida FTE]
 gi|166230552|sp|A0Q6P7|RUVA_FRATN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|118423522|gb|ABK89912.1| holliday junction DNA helicase, subunit A [Francisella novicida
           U112]
 gi|194372794|gb|EDX27505.1| holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           novicida FTE]
          Length = 216

 Score =  167 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 59/212 (27%), Positives = 103/212 (48%), Gaps = 12/212 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +       +LIDV G+ Y ++ P+ T   LG I    +L+    +R+D  +L
Sbjct: 1   MISFIKGVLIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQVSLYTHFVVREDAQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S +D++ F  L  V G+GAR A+ +LS + +  L+  I  ++  ++A +PGI  K 
Sbjct: 61  YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDM---------SCVNKEQAHICSMPSFAINAISALVNLG 171
           A R++ E+  K + +++ +             S   +         S    ++ AL+ LG
Sbjct: 121 AERLVVEIYDKLLKMANEIYAQTSGTTTTSQDSQAQQAPTSAVLANSIFNESVDALLALG 180

Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
           Y Q  A     S +    +    +++IR AL+
Sbjct: 181 YKQKDAEKMSRSAM---GDATTAAEVIRKALQ 209


>gi|332285258|ref|YP_004417169.1| Holliday junction DNA helicase motor protein [Pusillimonas sp.
           T7-7]
 gi|330429211|gb|AEC20545.1| Holliday junction DNA helicase motor protein [Pusillimonas sp.
           T7-7]
          Length = 192

 Score =  167 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 103/206 (50%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       V +DV GV Y I  P+ TL  L   G   TL+    +R+D   L
Sbjct: 1   MIGRITGTLIEKTPPIVCVDVGGVGYEIDVPMSTLYDLPDNGATITLYTHLAVREDAHTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  +R  F  L  V G+GAR A+ VLS ++  EL  +I  Q + ++ ++PGI  K 
Sbjct: 61  YGFLSSKERSAFRALIKVTGIGARTALAVLSGMSVDELANAITQQETGLLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK     +     ++                 + ++AL++LGY   +   A
Sbjct: 121 AERLLLELRGKLGGDLAHGAGTVAAG-------------RDDILNALLSLGYSNSETQAA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
               LK      D ++ IRLAL++++
Sbjct: 168 ----LKNLPEGVDVAEGIRLALKSLA 189


>gi|325286780|ref|YP_004262570.1| Holliday junction ATP-dependent DNA helicase ruvA [Cellulophaga
           lytica DSM 7489]
 gi|324322234|gb|ADY29699.1| Holliday junction ATP-dependent DNA helicase ruvA [Cellulophaga
           lytica DSM 7489]
          Length = 193

 Score =  167 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 99/205 (48%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +      +++I+  GV Y +   + TLS +    +   L+    +++D   L
Sbjct: 1   MITHLRGKLVEKNPTFLVIECNGVGYFVNISLHTLSKVSDA-ENIQLYTHLQVKEDSHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R+ F LL SV G+G  +A  +LS ++  ++ ++I   +   I  + GI  K 
Sbjct: 60  FGFAEKSEREIFRLLISVSGIGPSIARTMLSSLSPAQVRDAIAGGDVATIQSVKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K + +  + +   S          S  +    A+SAL  LG+ + QA   
Sbjct: 120 AQRVILDLKDKVLKIYDIDEVSTS----------SNNTNKEEALSALEVLGFARKQAEKT 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V+ ++        II+LAL+ +
Sbjct: 170 VDVVVSQDP-TLSVENIIKLALKNL 193


>gi|166031914|ref|ZP_02234743.1| hypothetical protein DORFOR_01615 [Dorea formicigenerans ATCC
           27755]
 gi|166028367|gb|EDR47124.1| hypothetical protein DORFOR_01615 [Dorea formicigenerans ATCC
           27755]
          Length = 203

 Score =  167 bits (423), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 108/205 (52%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +   YED V++DV GV Y IY   +++S L  IG    +    ++++D ++L
Sbjct: 1   MISYIRGELAAQYEDKVIVDVGGVGYGIYMSAQSMSKLPPIGSEVKIHTYLNVKEDSMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  D   F LL  V G+G +    +LS ++  +L  +++  + K I+  PGI  K 
Sbjct: 61  FGFLTVDDLNVFKLLIGVSGIGPKGGQAILSVLSPDDLRFAVMADDVKAISSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK K  S+   ++  ++     +A + +       A+ ALV LGYG  +A  A
Sbjct: 121 AQKLIVELKDKL-SIEDALEHAITEDGALKAQMSTGGEIQSEAVQALVALGYGNTEALKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V  +        ++++ AL+ +
Sbjct: 180 VKQV--EITPDMQVEELLKRALKFM 202


>gi|319941758|ref|ZP_08016080.1| Holliday junction DNA helicase RuvA [Sutterella wadsworthensis
           3_1_45B]
 gi|319804691|gb|EFW01558.1| Holliday junction DNA helicase RuvA [Sutterella wadsworthensis
           3_1_45B]
          Length = 193

 Score =  167 bits (423), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 99/205 (48%), Gaps = 14/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +LIDV GV Y +  P+ T   L ++G   TL     +R+D   L
Sbjct: 1   MIGRLHGKLLEKNPPQILIDVSGVGYEVDVPMSTFCNLPEVGGELTLHTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  + GVG ++A+ +LS IT  +L +++    + ++ ++PGI  K 
Sbjct: 61  YGFATLAERAVFRALIKISGVGPKIALALLSGITVDQLKDAVDRGETGLLTKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK     +             A          +  +AL+ LGY + +A  A
Sbjct: 121 AERLVLELKGKLAGTGAAT----------AAAAVPTSGARADVAAALIALGYSEREAAAA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
                KK       +  +RLAL+++
Sbjct: 171 ----TKKLPEDCTVNDGLRLALKSL 191


>gi|261365694|ref|ZP_05978577.1| holliday junction DNA helicase RuvA [Neisseria mucosa ATCC 25996]
 gi|288565789|gb|EFC87349.1| holliday junction DNA helicase RuvA [Neisseria mucosa ATCC 25996]
          Length = 194

 Score =  167 bits (423), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 99/205 (48%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   L+ +  +R+D   L
Sbjct: 1   MISRLTGRLIEKNPPQIVIDVNGVGYEADVSMQTFYNLPALGETVQLYTQLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L  V G+GA+ A+G+LS ++A EL  ++  ++ K ++  PGI  K 
Sbjct: 61  FGFATADERATFRQLVKVSGIGAKTALGILSAMSADELARAVADEDIKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK +S                           + ++ L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLVS---------HATADGLFAATPAADETDDIVNTLIALGYNEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +        +  + +RLAL+ +
Sbjct: 172 IKGI----PKGTEVGEGVRLALKNL 192


>gi|86131995|ref|ZP_01050591.1| Holliday junction ATP-dependent DNA helicase RuvA [Dokdonia
           donghaensis MED134]
 gi|85817329|gb|EAQ38509.1| Holliday junction ATP-dependent DNA helicase RuvA [Dokdonia
           donghaensis MED134]
          Length = 193

 Score =  167 bits (423), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 99/205 (48%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +      +V++D  GV Y I   + T   LG  G+   L+    +++D   L
Sbjct: 1   MITHLSGRLIEKNPTHVVLDCNGVGYFINISLHTFGQLGD-GEALKLYTHLQVKEDSHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+  ++R+ F LL SV G+GA  A  +LS +   ++ ++I   +   I  I GI  K 
Sbjct: 60  YGFMEVMEREIFRLLLSVSGIGASTARTMLSSLEPNQIKQAIASNDVATIQSIKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           + R++ +LK K + +  +  +                +    A+SAL  LG+ + QA   
Sbjct: 120 SQRVILDLKDKILKVYDISTE----------SAVQSNTNKEEALSALETLGFARKQAEKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
            +++ K++ + A    II+ AL+ +
Sbjct: 170 CLAITKEKPD-ASVETIIKEALKKL 193


>gi|50121417|ref|YP_050584.1| Holliday junction DNA helicase RuvA [Pectobacterium atrosepticum
           SCRI1043]
 gi|81644878|sp|Q6D4A1|RUVA_ERWCT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|49611943|emb|CAG75392.1| holliday junction DNA helicase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 205

 Score =  167 bits (423), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 100/206 (48%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+  GV Y ++ P+     L ++     +F    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPQVLIEANGVGYEVHMPMTCFYELPELNQEAIIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  L  V GVG ++A+ +LS ++AT+ V ++  +    + ++PG+  K 
Sbjct: 61  FGFNDKQERALFRELIKVNGVGPKLALAILSGMSATQFVSAVEREEIGALIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM--PSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   LS  +   +S +                  A +ALV LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLSGDLFNSVSDIPLTSPANVDNRVGEPEAEAAAALVALGYKPQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             +  + +     AD   +IR ALRA
Sbjct: 181 RMISKIAR---PDADCETLIRDALRA 203


>gi|237654483|ref|YP_002890797.1| Holliday junction DNA helicase RuvA [Thauera sp. MZ1T]
 gi|237625730|gb|ACR02420.1| Holliday junction DNA helicase RuvA [Thauera sp. MZ1T]
          Length = 200

 Score =  167 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 104/206 (50%), Gaps = 8/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       +L+D  GV Y I  P+ T   L   G   +L     +R+D   L
Sbjct: 1   MIGRITGTLLEKNPPQILVDAHGVGYEIDVPMSTFYNLPATGGTVSLHTHFVVREDGHFL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +R  F  L  V GVGAR+A+ VLS ++  +L +++ LQ +  + +IPGI  K 
Sbjct: 61  FGFATEEERATFRQLLKVSGVGARMALAVLSGLSVNDLAQAVALQEAGRLVKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K           M+      A   + P    + ++AL+ LGY + +A +A
Sbjct: 121 AERLLLELRDKLGK----ALPSMTGARLAAAAPGAAPDAKSDILNALLALGYNEREALSA 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  + +        S  IR AL+A+S
Sbjct: 177 MKGLAEDVG----VSDGIRQALKALS 198


>gi|329123663|ref|ZP_08252223.1| crossover junction ATP-dependent DNA helicase RuvA [Haemophilus
           aegyptius ATCC 11116]
 gi|327469862|gb|EGF15327.1| crossover junction ATP-dependent DNA helicase RuvA [Haemophilus
           aegyptius ATCC 11116]
          Length = 204

 Score =  167 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 104/205 (50%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L++VQGV Y +  P+ +   L +IG   TLF    +R+D   L
Sbjct: 1   MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  +   +I  +    + +IPG+  K 
Sbjct: 61  FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELKGK   +  S    + + +    +      S +  AISAL+ LGY   +A  
Sbjct: 121 AERLLVELKGKFKGVKQSDFFVESTHIRLSPSIESHSESSSDEAISALIALGYKPAEAEK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  V+K E       Q+IR AL+A
Sbjct: 181 MVKRVVKPE---LTSEQVIREALKA 202


>gi|225410073|ref|ZP_03761262.1| hypothetical protein CLOSTASPAR_05294 [Clostridium asparagiforme
           DSM 15981]
 gi|225042421|gb|EEG52667.1| hypothetical protein CLOSTASPAR_05294 [Clostridium asparagiforme
           DSM 15981]
          Length = 207

 Score =  167 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 65/208 (31%), Positives = 104/208 (50%), Gaps = 4/208 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +  + ED ++++  GV   I+ P+  L  L  IG   T++    +R+D + L
Sbjct: 1   MISYIKGPLTAIEEDVIVVEAGGVGMGIHVPLSVLDRLPGIGREVTVYTYFQVREDAMSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  DR  F  L  V GVG + A+G+LS +T  +L  +I+  ++K I++ PGI  K 
Sbjct: 61  YGFLNRQDRDMFRQLIGVNGVGPKAALGILSTMTPDDLRMAIVTGDAKAISRAPGIGPKT 120

Query: 121 ASRIMTELKGKAI--SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ +LK K     +   +               SM   A  A+ ALV LGY   +A 
Sbjct: 121 AQRLILDLKDKISMEEMLGNLALPCDGGASAALGTASMGEAAKEAVQALVALGYSNMEAN 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
            AV  V  +         +++ +LR +S
Sbjct: 181 KAVKQV--EVTETMTAEDVLKASLRYLS 206


>gi|294141122|ref|YP_003557100.1| Holliday junction DNA helicase RuvA [Shewanella violacea DSS12]
 gi|293327591|dbj|BAJ02322.1| Holliday junction DNA helicase RuvA [Shewanella violacea DSS12]
          Length = 205

 Score =  167 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 50/207 (24%), Positives = 103/207 (49%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +LI+V G+ Y +  P+ +   L ++     ++    +R+D   L
Sbjct: 1   MIGRLRGLLIEKQAPEILIEVSGLGYEVQMPLTSFYELPELNQEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  +R  F LL    GVG ++A+ +LS +T+ E V  +   +   + ++PG+  K 
Sbjct: 61  YGFITKQERALFRLLIKTNGVGPKLALTILSGMTSAEFVACVERDDIATLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQD--MSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E++ K  SL            +         + +   +AI+ L+ LGY   QA+
Sbjct: 121 AERLLIEMRDKLKSLMEASAGSEREFMLKTNYTPTKIVNTAEEDAIAVLLALGYKSAQAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            +V +  K   +     ++I+ +L+++
Sbjct: 181 KSVSAAYK---DGMTSEELIKSSLKSM 204


>gi|90426276|ref|YP_534646.1| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris
           BisB18]
 gi|122995259|sp|Q20X09|RUVA_RHOPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|90108290|gb|ABD90327.1| Holliday junction DNA helicase subunit RuvA [Rhodopseudomonas
           palustris BisB18]
          Length = 205

 Score =  167 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 95/206 (46%), Positives = 135/206 (65%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   EDYV++DVQGV Y ++C  RTL  L + G    L +ET++R+DQI+L
Sbjct: 1   MIGKLKGLIDSYGEDYVILDVQGVGYQVHCSARTLQALPQAGGAAVLSIETYVREDQIKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF SDL+R+WF LLQ+VQGVGA+VA+ VLS +   +L  +I L++   +A+  G+  K+
Sbjct: 61  FGFRSDLEREWFRLLQTVQGVGAKVALAVLSTLPPADLANAIALRDKAAVARTSGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA + +SV    ++          S P    +AISALVNLGYGQ QA  A
Sbjct: 121 AERIVTELKDKAPAFASVDPAVVALSG--ALDERSAPRPVTDAISALVNLGYGQPQAAAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + S  +     A+ +Q+I+L L+ +S
Sbjct: 179 IASASRSAGEGAETAQLIKLGLKELS 204


>gi|163786536|ref|ZP_02180984.1| Holliday junction DNA helicase [Flavobacteriales bacterium ALC-1]
 gi|159878396|gb|EDP72452.1| Holliday junction DNA helicase [Flavobacteriales bacterium ALC-1]
          Length = 193

 Score =  167 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 98/205 (47%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +       V+ID  GV Y I   + T S +    +   L+    +R+D   L
Sbjct: 1   MITHLEGKLVEKNPTDVVIDCNGVGYFINISLHTFSQIPDR-ENLRLYTYLQVREDSHSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R+ F LL SV G+GA  A  +LS +T  ++ E I   +  +I  + GI  K 
Sbjct: 60  YGFSSKTEREIFKLLISVSGIGANTARTMLSSLTPDQVKEGIASGDVALIQSVKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K + +  + +  +              +    A+SAL  LG+ + Q+   
Sbjct: 120 AQRVIIDLKDKVLKVYGIDELSL----------IPNNTHKDEALSALDVLGFNKKQSEKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +L+ + +     QII+ AL+ +
Sbjct: 170 VDRILQTQPDAL-VEQIIKEALKNL 193


>gi|148825408|ref|YP_001290161.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae PittEE]
 gi|229846401|ref|ZP_04466509.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae 7P49H1]
 gi|166230556|sp|A5UAH7|RUVA_HAEIE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|148715568|gb|ABQ97778.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae PittEE]
 gi|229810494|gb|EEP46212.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae 7P49H1]
          Length = 204

 Score =  167 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L++VQGV Y +  P+ +   L +IG   TLF    +R+D   L
Sbjct: 1   MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  +   +I  +    + +IPG+  K 
Sbjct: 61  FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELKGK   +  S    + + +    +      S +  AISAL+ LGY   +A  
Sbjct: 121 AERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESSSDEAISALIALGYKPVEAEK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  V K E       Q+IR AL+A
Sbjct: 181 MVKRVAKPE---LTSEQVIREALKA 202


>gi|144898113|emb|CAM74977.1| Holliday junction ATP-dependent DNA helicase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 209

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 84/205 (40%), Positives = 124/205 (60%), Gaps = 2/205 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K+KG I+ L +D+ ++DV GV Y+++C  RTL  L ++G    L VETH+R+D I L
Sbjct: 1   MIAKLKGLIDSLGDDFTVVDVGGVGYLVFCSGRTLGRL-QVGIAAALHVETHVREDHIHL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL   +R WF LL +VQGVGA+VA+ +LS  T  +L+++I  Q+  ++ +  G+  K+
Sbjct: 60  YGFLEPGERDWFNLLITVQGVGAKVALAILSVATPEQLLQTIAAQDKVMLTRASGVGPKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA  +S       +        +        +AISALVNLGY + +A  A
Sbjct: 120 ALRILTELKDKAGKMSLGGFASSAGTAAISTPVGD-GGLMEDAISALVNLGYKRLEAFEA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V K+    AD S +IR AL+ +
Sbjct: 179 VGIVAKELGEGADSSTLIRHALKRL 203


>gi|146299412|ref|YP_001194003.1| Holliday junction DNA helicase RuvA [Flavobacterium johnsoniae
           UW101]
 gi|57236796|gb|AAW49008.1| RuvA [Flavobacterium johnsoniae UW101]
 gi|146153830|gb|ABQ04684.1| Holliday junction DNA helicase RuvA [Flavobacterium johnsoniae
           UW101]
          Length = 193

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 100/205 (48%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +       V+ID  GV Y +   + T S +    DF  L+    +++D   L
Sbjct: 1   MIAHLQGKLVEKNPTEVVIDCGGVGYHVNISLHTFSLIPNA-DFIKLYTHLQIKEDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   +R+ F +L SV G+GA +A  +LS I   +++ +I   +  VI  I GI  K 
Sbjct: 60  YGFVEKSEREIFRMLLSVSGIGAGIARTMLSSIEPRQIINAIASGDVGVIQSIKGIGNKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K + L  + +            +    +    A+SAL  LG+ +  +   
Sbjct: 120 AQRVILDLKEKVLKLYDLDE----------VSVVQNNTNRDEALSALEVLGFVRKTSEKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  ++K++   A    II+ AL+++
Sbjct: 170 VEKIVKEDPE-ATVETIIKKALKSL 193


>gi|134299518|ref|YP_001113014.1| Holliday junction DNA helicase RuvA [Desulfotomaculum reducens
           MI-1]
 gi|172044284|sp|A4J536|RUVA_DESRM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|134052218|gb|ABO50189.1| Holliday junction DNA helicase subunit RuvA [Desulfotomaculum
           reducens MI-1]
          Length = 199

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 105/206 (50%), Gaps = 10/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +      +V+IDV G+ Y +  P  T   L  +G    LF    +R+D I+ 
Sbjct: 1   MIAYIKGLLAADGPGWVVIDVNGIGYHVSIPSTT--QLPALGHEVKLFTHMSVREDGIQF 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF  + +++ F+LL +V GVG +VA+ V+S +  + L  +I +++   + ++PG+  K 
Sbjct: 59  FGFAKEDEKECFLLLLNVAGVGPKVALAVVSHLPPSNLRSAIAIEDVNQLVKVPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K   +++V    +                   A+ AL+ LGY Q +A  A
Sbjct: 119 AQRILLELKDKLKGMAAVEHSTL-------QQSVITTGSGDEAVEALLALGYSQGEARDA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V    K      D S +I++AL+ ++
Sbjct: 172 VKKAQKSAPE-EDLSALIKIALKELA 196


>gi|16272267|ref|NP_438479.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae Rd
           KW20]
 gi|260581219|ref|ZP_05849038.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae RdAW]
 gi|1173330|sp|P44632|RUVA_HAEIN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|1573280|gb|AAC21976.1| Holliday junction DNA helicase (ruvA) [Haemophilus influenzae Rd
           KW20]
 gi|260092144|gb|EEW76088.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae RdAW]
          Length = 204

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 65/204 (31%), Positives = 102/204 (50%), Gaps = 4/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L++VQGV Y +  P+ +   L +IG   TLF    +R+D   L
Sbjct: 1   MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  +   +I  +    + +IPG+  K 
Sbjct: 61  FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELKGK   +  S    + + +    +      S +  AISAL+ LGY   +A  
Sbjct: 121 AERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESSSDEAISALIALGYKPVEAEK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203
            V  V K E       Q+IR AL+
Sbjct: 181 MVKRVAKPE---LTSEQVIREALK 201


>gi|238916873|ref|YP_002930390.1| Holliday junction DNA helicase RuvA [Eubacterium eligens ATCC
           27750]
 gi|259495642|sp|C4Z030|RUVA_EUBE2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|238872233|gb|ACR71943.1| Holliday junction DNA helicase RuvA [Eubacterium eligens ATCC
           27750]
          Length = 207

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 61/207 (29%), Positives = 106/207 (51%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +  +  D ++++  G+ Y IY P      L  +G    ++   ++++D+  L
Sbjct: 1   MISYIKGELAEILPDVIVVEANGIGYNIYVPGSVPGELPSVGSEVKIYTYMNVKEDECSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  D   F +L  V G+G + A+G LS ITA +L  +++  +   I  +PGI  K 
Sbjct: 61  FGFLTRDDLSMFKMLICVNGIGPKAALGALSNITADDLRFAVLADDVAAIKALPGIGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMS--CVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A +I+ ELK K   L  V +  +S        +++ ++     +A+ ALV+LGY    A 
Sbjct: 121 AQKIIIELKDKL-KLDEVFESALSKNKKADNNSNVSNVMMIRNDAVEALVSLGYSSKDAL 179

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            AV  V  ++    D   +++ AL+ +
Sbjct: 180 VAVKEV--EDIENKDSETVLKEALKKL 204


>gi|258514397|ref|YP_003190619.1| Holliday junction DNA helicase RuvA [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257778102|gb|ACV61996.1| Holliday junction DNA helicase RuvA [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 203

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 105/205 (51%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G I  +  + V++DV GV Y I+ P    S L   G+   L     +++D ++L
Sbjct: 1   MIAFLRGKIVFIEANSVVLDVSGVGYRIFVPASCQSKLPAAGEEMLLLTYLSVKEDSLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   +R+ F++L +V G+G + A+ VLS ++  +L  ++  ++ K + ++PGI  K 
Sbjct: 61  YGFIEQQERELFVMLLNVGGIGPKGALSVLSCLSPAQLYLAVAREDIKAVMKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K        ++           +    + A +A+ AL  LGY   +A   
Sbjct: 121 AQRLILELKDKLKGRVQPGEETT------PETVSGSQNEAEDALFALEALGYSVSEAIVV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  VL+        S++++ AL+ +
Sbjct: 175 VQEVLRSSSKNISASELLKNALQKL 199


>gi|296132699|ref|YP_003639946.1| Holliday junction DNA helicase RuvA [Thermincola sp. JR]
 gi|296031277|gb|ADG82045.1| Holliday junction DNA helicase RuvA [Thermincola potens JR]
          Length = 200

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 104/206 (50%), Gaps = 9/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  + EDY++IDV GV Y +Y P   +  L   G   T+F   ++R+D ++L
Sbjct: 2   MISFLRGELNYIGEDYIIIDVHGVGYKVYVPASFIGKLPACGQPVTVFTHLYVREDVMQL 61

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    + + F +L  V G+G +VA+ VLS + A+   ++I+ +   V+ Q+PGI  K 
Sbjct: 62  YGFPDREELELFEVLLQVSGIGPKVAVSVLSAVPASSFKQAIVNEQVGVLTQVPGIGKKT 121

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K   L    Q      N               A+ AL+ LGY  ++A  A
Sbjct: 122 AQRMILELKDKLGKLPGRGQAPPVSAN--------FAPNTEEAVQALIALGYAPNEARKA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  V+     +    + I+ AL  ++
Sbjct: 174 VNKVVNTHPELG-VEESIKKALLELA 198


>gi|225012191|ref|ZP_03702628.1| Holliday junction DNA helicase RuvA [Flavobacteria bacterium
           MS024-2A]
 gi|225003746|gb|EEG41719.1| Holliday junction DNA helicase RuvA [Flavobacteria bacterium
           MS024-2A]
          Length = 193

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 97/205 (47%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +I G +       V+ID  G+ Y +   + T S LG   +   LF    +R+D   L
Sbjct: 1   MITQIIGRLVEKSPTQVVIDCHGIGYEVNISLNTYSQLGD-DENIKLFTHLQIREDSHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++R  F LL SV G+GA +A  +LS +   ++  +II ++   I  I GI +K 
Sbjct: 60  FGFFTPMERSVFRLLLSVSGIGASIARTMLSSLEPQQIQRAIISEDLNTIKSIKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K ++L    +                 +    A+SAL  LGY + Q+   
Sbjct: 120 AQRVLIELKDKMLNLYEGEEIQSFA----------NNTIKEEALSALEVLGYSRKQSEKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + + ++     +    +I+ AL  +
Sbjct: 170 IDNAIQSAPE-SSVEGLIKAALNKL 193


>gi|309972527|gb|ADO95728.1| Holliday junction resolvasome, DNA-binding subunit [Haemophilus
           influenzae R2846]
          Length = 204

 Score =  166 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 102/205 (49%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L++VQGV Y +  P+ +   L +IG   TLF    +R+D   L
Sbjct: 1   MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  +   +I  +    + +IPG+  K 
Sbjct: 61  FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELKGK   +  S    + + +    +      S +  AISAL+ LGY   +A  
Sbjct: 121 AERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESSSDEAISALIALGYKPVEAEK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  V K         Q+IR AL+A
Sbjct: 181 MVKRVAK---PALTSEQVIREALKA 202


>gi|323138242|ref|ZP_08073314.1| Holliday junction DNA helicase RuvA [Methylocystis sp. ATCC 49242]
 gi|322396494|gb|EFX99023.1| Holliday junction DNA helicase RuvA [Methylocystis sp. ATCC 49242]
          Length = 205

 Score =  166 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 89/206 (43%), Positives = 135/206 (65%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   ED+V++DV GV Y+++C  RTL  L + G+   L +ET +R+D IRL
Sbjct: 1   MIGKLKGLIDSYGEDFVILDVNGVGYVVHCSSRTLQKLPRAGEAAALAIETQVREDSIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++++R WF LLQ+VQGVGA+VA+G+LS ++++E+  +I  Q+  ++A+ PG+  K+
Sbjct: 61  FGFEAEVERDWFRLLQTVQGVGAKVALGILSILSSSEIASAIATQDKAMVARAPGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ ELK KA +  +V           +    S PS   +AISALVNLGYG+ QA  A
Sbjct: 121 AARIVAELKDKAPAFGAVDPVVAKLAG--EDADASAPSAVRDAISALVNLGYGRPQAAAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + +K     A+   +IR  LR ++
Sbjct: 179 VAASVKALGEGAETGALIRQGLRELA 204


>gi|332716453|ref|YP_004443919.1| Holliday junction ATP-dependent DNA helicase ruvA [Agrobacterium
           sp. H13-3]
 gi|325063138|gb|ADY66828.1| Holliday junction ATP-dependent DNA helicase ruvA [Agrobacterium
           sp. H13-3]
          Length = 205

 Score =  166 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 98/206 (47%), Positives = 140/206 (67%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG IE +  DYVL+DV GVCY+ YC  RTLS +G  G+   LF+ET++R+DQ+RL
Sbjct: 1   MIGKLKGTIEEIGTDYVLVDVHGVCYVAYCSARTLSKIGSAGEAVVLFIETYVREDQLRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLS L+R+WF LLQSVQGVG++VA+ VLS ++ +EL  +I LQ+  +I++ PG+  K+
Sbjct: 61  FGFLSALEREWFNLLQSVQGVGSKVALAVLSTLSPSELANAIALQDKVMISRAPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++TEL+ KA + +      +    +    + S P    +A+SAL NLGY +DQA  A
Sbjct: 121 AVRLVTELRNKAPAFAGEASASIGLKQELGEGVASAP--VADAVSALTNLGYSRDQAANA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + LK      D +++IRL LR +S
Sbjct: 179 VAAALKNGGEGGDSAKLIRLGLRELS 204


>gi|88705605|ref|ZP_01103315.1| Holliday junction DNA helicase ruvA [Congregibacter litoralis KT71]
 gi|88700118|gb|EAQ97227.1| Holliday junction DNA helicase ruvA [Congregibacter litoralis KT71]
          Length = 195

 Score =  166 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 6/195 (3%)

Query: 10  EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69
                  +L+DV GV Y +  P+ TL  L  +G+  TL     +R+D   L+GF+S  DR
Sbjct: 2   LQKQPPEILVDVGGVGYELQVPMTTLFQLPALGEVVTLLTHHAVREDAQTLYGFVSARDR 61

Query: 70  QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           + F  L  V GVG ++A+ +LS +       ++   +   +  +PG+  K A R++ E++
Sbjct: 62  ELFRHLIKVNGVGPKLALTILSGMDGERFARAVHDDDLSALVALPGVGKKTAERLLIEMR 121

Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189
            +          + + + +             +A  ALV LGY   +A   V  V     
Sbjct: 122 DRVSGWLEPGPGESANLGQ----AGPSSDKLGDAEGALVALGYKPAEAARLVARV--DND 175

Query: 190 NIADDSQIIRLALRA 204
           +I+D  ++IRLALR+
Sbjct: 176 DISDSEELIRLALRS 190


>gi|311748060|ref|ZP_07721845.1| holliday junction DNA helicase RuvA [Algoriphagus sp. PR1]
 gi|126575044|gb|EAZ79402.1| holliday junction DNA helicase RuvA [Algoriphagus sp. PR1]
          Length = 199

 Score =  166 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 56/203 (27%), Positives = 100/203 (49%), Gaps = 6/203 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +      YVLIDV G+ Y +   ++T S +    +   L    H+++D   L
Sbjct: 1   MIDYLHGKLVFKDPTYVLIDVGGIGYHVKISLQTYSQIKDE-EQIKLLTYLHIKEDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +++ F+LL S+ GVG    + +LS ++  E+ +SI+  +   I  + GI  K 
Sbjct: 60  YGFKNADEKRLFLLLISINGVGPNTGLMILSSLSTEEIEQSILSGDVATIQHVKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K          D S  + +   + +  +    A+ AL+ LG+ +  A   
Sbjct: 120 AQRIILELKDKVGK-----ATDSSSGDSQVGFLNAHNNLREEALKALITLGFPKTAAEKN 174

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           + +VLKK        ++I+ +L+
Sbjct: 175 IRAVLKKTTGEISLEELIKASLK 197


>gi|292670920|ref|ZP_06604346.1| crossover junction endoribonuclease subunit A [Selenomonas noxia
           ATCC 43541]
 gi|292647541|gb|EFF65513.1| crossover junction endoribonuclease subunit A [Selenomonas noxia
           ATCC 43541]
          Length = 200

 Score =  166 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 74/205 (36%), Positives = 110/205 (53%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +   + DY  +DV  V Y ++   +T + L  +G+   L++ TH+R+D I L
Sbjct: 1   MIGFLRGKVTYTFPDYCFLDVHDVGYRVFVSHQTRNHL-SVGEEVMLYIHTHVREDAILL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +   F  L  + G+G +VA G+LS ITA E    I  ++ K I ++PGI  K 
Sbjct: 60  YGFFSQEEYDLFQHLIGISGIGPKVAQGILSAITANEFYRLIHQKDVKAITKLPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K   L+S    D S  +       SM      A  AL+NLG+GQ +    
Sbjct: 120 AERIILELKDK---LTSSSFDDDSFADHAAGFADSMGDKISEATEALLNLGFGQSE---- 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + SVLKK+ +     +IIR AL  +
Sbjct: 173 IQSVLKKKMDWESTEEIIRYALAEL 197


>gi|254000106|ref|YP_003052169.1| Holliday junction DNA helicase RuvA [Methylovorus sp. SIP3-4]
 gi|253986785|gb|ACT51642.1| Holliday junction DNA helicase RuvA [Methylovorus sp. SIP3-4]
          Length = 192

 Score =  166 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 104/206 (50%), Gaps = 16/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +I G +       V+ID  GV Y    P+ T   L  +G+   L  +  +R+D   L
Sbjct: 1   MISRISGVLIEKAPPQVVIDCHGVGYECEVPMSTFYNLPALGEKVVLLTQFIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +D +RQ F  L  V G+GA+ A+ +LS ++  +L +++ LQ + ++ ++PGI  K 
Sbjct: 61  YGFGTDRERQTFRQLLKVNGIGAKSALSILSGLSVDDLAQAVALQETALLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K              V+   A      S + + ++AL+ LGY + +A  A
Sbjct: 121 AERLLLELKDKF------------SVDGLTAPAGQPKSASGDVLNALLALGYNEREAMAA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  +          +  IRLAL+++S
Sbjct: 169 VKQL----PADVVVADGIRLALKSLS 190


>gi|255066950|ref|ZP_05318805.1| holliday junction DNA helicase RuvA [Neisseria sicca ATCC 29256]
 gi|255048775|gb|EET44239.1| holliday junction DNA helicase RuvA [Neisseria sicca ATCC 29256]
          Length = 194

 Score =  166 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 99/205 (48%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  +G+   L+ +  +R+D   L
Sbjct: 1   MISRLTGKLIEKNPPQIVIDVNGVGYEADVSMQTFYNLPALGETVQLYTQLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L  V G+GA+ A+G+LS ++A EL  ++  ++ K ++  PGI  K 
Sbjct: 61  FGFATADERATFRQLVKVSGIGAKTALGILSAMSADELARAVADEDIKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK +S                           + ++ L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLVS---------HAAADGLFAAAPAADETDDIVNTLIALGYNEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +        +  + +RLAL+ +
Sbjct: 172 IKGI----PKGTEVGEGVRLALKNL 192


>gi|297183449|gb|ADI19581.1| holliday junction resolvasome, DNA-binding subunit [uncultured
           Acidobacteria bacterium HF0770_27F21]
          Length = 192

 Score =  166 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 99/206 (48%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     +YV++DV GV Y +Y P+ +   +G+IGD   L + TH+R D  +L
Sbjct: 1   MIAALRGLLHEKTPEYVIVDVGGVGYQVYLPLPSFYEIGEIGDEVLLRIHTHVRDDTFKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     ++ F  L SV G+G ++A+ +LS +    L+ +I+  +   ++ IPG+  K 
Sbjct: 61  YGFKDLPQQRLFERLISVAGIGPKLAVTILSGMDTDLLIGAIVDSDIVRLSTIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+  ELK K   L  V                       + +SAL NLGY    A  A
Sbjct: 121 AERMALELKEKVDDLGLVSSD------------SGPRGIRQDVLSALENLGYRPRDAERA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  V   E        +++  LR ++
Sbjct: 169 LEKV---EDPADQFEALLKQTLRVLA 191


>gi|291550303|emb|CBL26565.1| Holliday junction DNA helicase subunit RuvA [Ruminococcus torques
           L2-14]
          Length = 202

 Score =  166 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 106/205 (51%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  + E   +++  G+ Y IY   +TLS L  +G+   +    ++R+D ++L
Sbjct: 1   MISYIRGELAAVQEQKAIVEAGGIGYGIYMSQQTLSMLPAVGEEVKIHTYLNVREDAMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  D Q F LL  V G+G +  + +LS ++  EL  +++  + K I+  PGI  K 
Sbjct: 61  YGFLTGEDLQVFRLLIGVSGIGPKAGLNILSCLSPDELRFAVLAGDVKTISSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK K  S+  V++Q      + +    +       A+ AL  LGYG  ++  A
Sbjct: 121 AEKLILELKDKM-SIEDVLEQAAHGGEQSKEIEATDTGMQAEAVQALTALGYGSAESLRA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V     + A    ++R AL+ +
Sbjct: 180 VKKV---SVDCASVEDLLREALKNL 201


>gi|319896645|ref|YP_004134838.1| holliday junction DNA helicase ruva [Haemophilus influenzae F3031]
 gi|317432147|emb|CBY80498.1| holliday junction DNA helicase RuvA [Haemophilus influenzae F3031]
          Length = 204

 Score =  166 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L++VQGV Y +  P+ +   L +IG   TLF    +R+D   L
Sbjct: 1   MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  +   +I  +    + +IPG+  K 
Sbjct: 61  FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELKGK   +  S    + + +    +      S +  AISAL+ LGY   +A  
Sbjct: 121 AERLLVELKGKFKGIKQSDFFVESTHIPLSPSIESHSESSSDEAISALIALGYKPAEAEK 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  V K E       Q+IR AL+A
Sbjct: 181 MVKLVAKPE---LTSEQVIREALKA 202


>gi|197284986|ref|YP_002150858.1| Holliday junction DNA helicase RuvA [Proteus mirabilis HI4320]
 gi|227355390|ref|ZP_03839791.1| Holliday junction ATP-dependent DNA helicase [Proteus mirabilis
           ATCC 29906]
 gi|229560118|sp|B4ETP7|RUVA_PROMH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|194682473|emb|CAR42407.1| Holliday junction ATP-dependent DNA helicase [Proteus mirabilis
           HI4320]
 gi|227164614|gb|EEI49485.1| Holliday junction ATP-dependent DNA helicase [Proteus mirabilis
           ATCC 29906]
          Length = 207

 Score =  166 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 60/208 (28%), Positives = 100/208 (48%), Gaps = 7/208 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG+I+G I       VLI+   GV Y I  P+     L  IG    ++ +  +R+D   
Sbjct: 1   MIGRIRGVILEKQPPVVLIEAGNGVGYEINMPMTCFYELPDIGQEAIIYTQFIVREDAQL 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    +R  F  L  V GVG ++A+ +LS ++A + V +I  ++   + ++PG+  K
Sbjct: 61  LYGFNQKQERALFRELIKVNGVGPKLALAILSGMSARQFVTAIENESISSLVKLPGVGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQ---DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
            A R++ E+K +   L+  + +   D+       +   S       A +AL+ LGY   +
Sbjct: 121 TAERLVVEMKDRFKGLNGDLFEQNGDIELPASASSKAPSAADIEAEASAALIALGYKPQE 180

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRA 204
           A   +  V       AD   +I+ ALRA
Sbjct: 181 AAKMISRVATA---GADSETLIKEALRA 205


>gi|71909671|ref|YP_287258.1| Holliday junction DNA helicase motor protein [Dechloromonas
           aromatica RCB]
 gi|90134857|sp|Q478E3|RUVA_DECAR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|71849292|gb|AAZ48788.1| Holliday junction DNA helicase subunit RuvA [Dechloromonas
           aromatica RCB]
          Length = 192

 Score =  166 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 98/206 (47%), Gaps = 16/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +++DV GV Y +  P+ T   L   G+   L     +R+D   L
Sbjct: 1   MIGRLTGILAEKNPPQIVLDVNGVGYELDVPMSTFYNLPAAGEKTKLLTHFAVREDGHYL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL++ +R  F  L  V G+GAR A+ VLS ++  +L  ++  Q    + +IPGI  K 
Sbjct: 61  YGFLTEAERFAFRQLLKVSGIGARTALSVLSGLSVGDLAAAVAQQELGRLIKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK                   +   ++     +  +AL+ LGY + +A +A
Sbjct: 121 AERLLLELKGKL------------ADATGVSLHPAVDDSKQDISNALLALGYNEKEAASA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +          S  IR AL+ +S
Sbjct: 169 MKQL----PADVSTSDGIRAALKLLS 190


>gi|83816675|ref|YP_444603.1| Holliday junction DNA helicase RuvA [Salinibacter ruber DSM 13855]
 gi|294506349|ref|YP_003570407.1| Holliday junction DNA helicase ruvA [Salinibacter ruber M8]
 gi|123726210|sp|Q2S5C8|RUVA_SALRD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|83758069|gb|ABC46182.1| Holliday junction DNA helicase RuvA [Salinibacter ruber DSM 13855]
 gi|294342677|emb|CBH23455.1| Holliday junction DNA helicase ruvA [Salinibacter ruber M8]
          Length = 202

 Score =  166 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 5/204 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +     D  L+DV G+ Y ++ P  T   L    +  TL    ++R+D   L
Sbjct: 1   MIDYVSGTLVDKTTDSALVDVNGLGYRVHVPTSTYKRLPDTDEEVTLHTYHYLREDDESL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +  V  VG ++A+  LS +T TEL + ++  +   + QI G+  K 
Sbjct: 61  YGFATKAERTVFETMTGVSRVGPKLALSALSAMTPTELRDHVMEGDKSRLTQISGVGTKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +   L  +          +        +     + AL  LG  +  A  +
Sbjct: 121 ADRLIVELRDRLADLDVLEDTSPLSGGSDARAEARADA-----LEALTELGLSKADAERS 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           +  VL+    I    +++R AL+A
Sbjct: 176 IRQVLRDNAGIQSADELVRRALKA 199


>gi|171464161|ref|YP_001798274.1| Holliday junction DNA helicase RuvA [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|229560114|sp|B1XS25|RUVA_POLNS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|171193699|gb|ACB44660.1| Holliday junction DNA helicase RuvA [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 193

 Score =  166 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 104/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +  ++   +L+D QG+ Y +  P+ TL  L + G   TL     +R+D  +L
Sbjct: 1   MIGRIQGTLVSVHPPRLLVDCQGISYEVDVPMSTLYQLPQAGQKITLLTHFQVREDAQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +R+ F  L  + GVG+R A+ VLS ++  EL ++I LQ +  + Q+PGI  + 
Sbjct: 61  FGFATETEREAFRQLIKISGVGSRTALAVLSGMSVNELAQAIALQEAGRLTQVPGIGKRT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+  ELKGK      V       +             +   + AL+ LGY + +A  A
Sbjct: 121 AERLCLELKGKLAPDLGVAGGKPQAIET-----------SSEVLQALLALGYSEKEALLA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +          S  IR+ L+ +S
Sbjct: 170 LKQI----PADTSISDGIRMGLKYLS 191


>gi|312113736|ref|YP_004011332.1| Holliday junction DNA helicase RuvA [Rhodomicrobium vannielii ATCC
           17100]
 gi|311218865|gb|ADP70233.1| Holliday junction DNA helicase RuvA [Rhodomicrobium vannielii ATCC
           17100]
          Length = 209

 Score =  166 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 86/209 (41%), Positives = 127/209 (60%), Gaps = 4/209 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++ +  D+ +IDV GV Y + C  RTL  L K G+   L +ET++R+D I+L
Sbjct: 1   MIGKLKGIVDAVGADHAIIDVGGVGYEVACSPRTLGAL-KPGEPVALSIETYVREDAIKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS+ +R WF LLQSVQGVGA+VA+ +L+ + + +L ++I +Q+   + + PG+  K+
Sbjct: 60  YGFLSEAERGWFRLLQSVQGVGAKVALSILATLDSAQLAQAIAMQDRVSVTRAPGVGPKV 119

Query: 121 ASRIMTELKGKAISLSSVV---QQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A RI+ ELK KA  L+  V       S          + PS A  A+SALVNLGY   QA
Sbjct: 120 ALRIVNELKDKAPPLAFSVAAIAAPASGSASAAIPASAAPSPAAEAVSALVNLGYAPLQA 179

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
             A+ + L K    A    +IRL L+ ++
Sbjct: 180 NAAISTALGKAGEDARTEDLIRLGLKDLA 208


>gi|313202065|ref|YP_004040723.1| holliday junction DNA helicase ruva [Methylovorus sp. MP688]
 gi|312441381|gb|ADQ85487.1| Holliday junction DNA helicase RuvA [Methylovorus sp. MP688]
          Length = 192

 Score =  166 bits (419), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 104/206 (50%), Gaps = 16/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +I G +       V+ID  GV Y    P+ T   L  +G+   L  +  +R+D   L
Sbjct: 1   MISRISGVLIEKAPPQVVIDCHGVGYECEVPMSTFYNLPALGEKVVLLTQFIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +D +RQ F  L  V G+GA+ A+ +LS ++  +L +++ LQ + ++ ++PGI  K 
Sbjct: 61  YGFGTDRERQTFRQLLKVNGIGAKSALSILSGLSVDDLAQAVALQETALLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K              V+   A      S + + ++AL+ LGY + +A  A
Sbjct: 121 AERLLLELKDKF------------SVDGLAAPAGQAKSASGDVLNALLALGYNEREAMAA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  +          +  IRLAL+++S
Sbjct: 169 VKQL----PADVVVADGIRLALKSLS 190


>gi|292490335|ref|YP_003525774.1| Holliday junction DNA helicase RuvA [Nitrosococcus halophilus Nc4]
 gi|291578930|gb|ADE13387.1| Holliday junction DNA helicase RuvA [Nitrosococcus halophilus Nc4]
          Length = 199

 Score =  166 bits (419), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 94/205 (45%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++L++VQGV Y +  P+ T   L   G    L+    +R D   L
Sbjct: 1   MIGRLRGVLLEKRAPFLLLEVQGVGYELEAPMSTFYVLPDRGAEVILYTHLVVRDDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           + F S+ +R+ F  L  V GVGA++ + +LS I        +   ++  + ++PG+  K 
Sbjct: 61  YAFASEKERELFRNLIRVNGVGAKLGLAILSGIEVESFTRCVQEGDTASLTRLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ +              +      + S      +A+SALV LGY    A+  
Sbjct: 121 AERLIVEMRDRL------FDGPREEMAGVLPRVGSGQVPTSDAVSALVALGYKSQDASRM 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +           +IIR AL+ +
Sbjct: 175 VRQL---NTEGLATEEIIRQALQRM 196


>gi|58425878|gb|AAW74915.1| holliday junction binding protein, DNA helicase [Xanthomonas oryzae
           pv. oryzae KACC10331]
          Length = 212

 Score =  165 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 61/204 (29%), Positives = 95/204 (46%), Gaps = 13/204 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      +++IDV GV Y +  P+ T   L  +G    LF     ++D + L
Sbjct: 19  MIGRLRGILAYKQPPWLVIDVGGVGYELEAPMSTFYDLPDVGRDVILFTHYAQKEDSVSL 78

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + +R+ F  +Q V G+GA++A+ VLS +T  E    I   +   + +IPGI  K 
Sbjct: 79  YGFLREGERRLFRDVQKVTGIGAKIALAVLSGVTVDEFARLITSGDITALTRIPGIGKKT 138

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +A   SS                   P     A  AL  LGY   +A   
Sbjct: 139 AERMVVELRDRAADFSSGAP----------ITGQLGPDAISEATVALQQLGYKPAEAARM 188

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
                 +   +A     IR AL+A
Sbjct: 189 ARDAGAEGGEVATV---IRKALQA 209


>gi|298293003|ref|YP_003694942.1| Holliday junction DNA helicase RuvA [Starkeya novella DSM 506]
 gi|296929514|gb|ADH90323.1| Holliday junction DNA helicase RuvA [Starkeya novella DSM 506]
          Length = 205

 Score =  165 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 84/206 (40%), Positives = 133/206 (64%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++   ED+V++DV GV Y+++C  RTL  L   G+  TLF+ET +R+D IRL
Sbjct: 1   MIGKLKGIVDSYVEDHVILDVHGVGYLVHCSARTLQQLPSPGEAATLFIETFVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  ++ WF LLQ+VQGVGA+VA+ VLS ++ +EL  ++ L +  ++A+  G+  K+
Sbjct: 61  YGFASPAEKAWFTLLQNVQGVGAKVALSVLSVLSPSELANAVALGDRAMVARANGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ ELK KA   + +         + +      P    +A+SALVNLGY Q QA+ A
Sbjct: 121 AARIVAELKDKAPGFADIDPAVAGLAAQIEERHAPAP--VADAVSALVNLGYAQIQASAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + +++    AD +++IRL L+ ++
Sbjct: 179 VAAAMREAGEGADAARLIRLGLKELA 204


>gi|301060127|ref|ZP_07200994.1| Holliday junction DNA helicase RuvA [delta proteobacterium NaphS2]
 gi|300445639|gb|EFK09537.1| Holliday junction DNA helicase RuvA [delta proteobacterium NaphS2]
          Length = 200

 Score =  165 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 104/206 (50%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +       +++ V GV Y ++ P+ T   L +      L + TH+R+D + L
Sbjct: 1   MISYLSGTLFEKSTQSIIVQVGGVGYEVFVPLSTFYTLPEKDGPVNLHIHTHVREDALIL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + L++  F++L SV G+G +++  +LS + A EL+ +I   ++  +  IPGI  K 
Sbjct: 61  FGFSTKLEKSLFLMLVSVSGIGPKLSANILSGMGAEELLRAIAAGDAPRLQAIPGIGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  ELK +A + S   Q   S  ++             + +SAL+NLGY    A  A
Sbjct: 121 AERIALELKDRAAAFSEDAQMPPSVTSETGTEKA-----MEDTLSALINLGYSAKMARAA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +     + K+      +I+ +L+ ++
Sbjct: 176 MEKAKMRVKD-KTLEGLIKESLKILA 200


>gi|253997451|ref|YP_003049515.1| Holliday junction DNA helicase RuvA [Methylotenera mobilis JLW8]
 gi|253984130|gb|ACT48988.1| Holliday junction DNA helicase RuvA [Methylotenera mobilis JLW8]
          Length = 192

 Score =  165 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 100/206 (48%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +LID  GV Y    P+ T   L  IGD   +     +R+D   L
Sbjct: 1   MIGRLSGTLLEKTPPLILIDCNGVGYECEVPMSTFYNLPAIGDKVVMLTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+GA+ A+ +LS ++  +LV+++ LQ   ++ ++PG+  K 
Sbjct: 61  YGFGTSQERATFRQLLKVNGIGAKSALSILSGLSIDDLVQAVALQEPSMLTRVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K            +       +     S   + ++AL+ LGY + +A  A
Sbjct: 121 AERLLLELKDKF-----------TIDGVAAMNEPQTKSATSDVLNALLALGYNEREAVAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  + K+       +  I+ AL+ +S
Sbjct: 170 VKLLDKE----ISVTDGIKQALKLLS 191


>gi|253699567|ref|YP_003020756.1| Holliday junction DNA helicase RuvA [Geobacter sp. M21]
 gi|259495645|sp|C6E1S9|RUVA_GEOSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|251774417|gb|ACT16998.1| Holliday junction DNA helicase RuvA [Geobacter sp. M21]
          Length = 199

 Score =  165 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 101/205 (49%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +     +++++DV GV Y ++ P  T   L   G   +L + T +++D I L
Sbjct: 1   MIALLTGKLAYKSPEFIILDVNGVGYQVHIPFSTYYTLPAEGGALSLQIHTSVKEDAINL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +++ F LL  V GVG ++A G+LS    +EL +S++  N   ++ IPGI  K 
Sbjct: 61  YGFRTQQEKELFQLLIGVSGVGPKLATGILSNSEPSELADSLVNGNLARLSAIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K   L     Q             +      + +SAL+NLGY +     A
Sbjct: 121 AERLVLELKEKMKKLGLAQPQAGGAT------APAKQEIRDDVLSALINLGYKEAVVQKA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +  K    A    +++ AL+ +
Sbjct: 175 LAEL--KVTEDATVELVLKQALKIL 197


>gi|78485238|ref|YP_391163.1| Holliday junction DNA helicase RuvA [Thiomicrospira crunogena
           XCL-2]
 gi|123755243|sp|Q31H84|RUVA_THICR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|78363524|gb|ABB41489.1| Holliday junction DNA helicase subunit RuvA [Thiomicrospira
           crunogena XCL-2]
          Length = 200

 Score =  165 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 59/204 (28%), Positives = 109/204 (53%), Gaps = 7/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +       +LI+V GV Y +  P+ T   +G++GD   L    H+R+D + L
Sbjct: 1   MIGFLSGTLHAKLPPQILINVNGVGYEVEAPMSTFYAIGEVGDEVMLLTHMHVREDAMLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S+L+R  F  L  V G+GA++A+G+LS ++  + V  + + ++  + +IPG+  K 
Sbjct: 61  FGFASELERSLFKELIKVNGIGAKMAIGILSAMSVNDFVGLVDVGDAPALTKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ +     +      S V+ +     +  +   +A+ AL++LGY   QA   
Sbjct: 121 AERLVIEMRDRLKGWGN---GASSNVSSKTMVSSAPHNQKASAVEALISLGYKTAQADKM 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V +V    ++     + I+ AL++
Sbjct: 178 VQAV----ESGLSLEETIKKALQS 197


>gi|222086988|ref|YP_002545522.1| Holliday junction DNA helicase RuvA [Agrobacterium radiobacter K84]
 gi|254766935|sp|B9J9J0|RUVA_AGRRK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|221724436|gb|ACM27592.1| Holliday junction DNA helicase RuvA [Agrobacterium radiobacter K84]
          Length = 204

 Score =  165 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 97/206 (47%), Positives = 144/206 (69%), Gaps = 3/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG IE + EDY L+DV GVCY+ YC  RTLS LG +G+ C LF+ET++R+DQIRL
Sbjct: 1   MIGKLKGTIEEIGEDYALVDVHGVCYVAYCSARTLSRLGSVGEACILFIETYVREDQIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF++ L+R+WF LLQ+VQGVGA+VA+ +LS +T +EL  +I LQ+   +++ PG+  K+
Sbjct: 61  FGFMAVLEREWFNLLQTVQGVGAKVALALLSTLTPSELANAIALQDRTAVSRAPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK K  + +    +  +   K++      P+   +A+SAL NLGY +DQA  A
Sbjct: 121 AMRIVTELKNKVPAFAG---EATNIGFKQELGEGVAPAPVSDAVSALTNLGYSRDQAANA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + + +K   + AD +++IRL L+ +S
Sbjct: 178 IAAAMKVAGDEADSAKLIRLGLKELS 203


>gi|170739181|ref|YP_001767836.1| Holliday junction DNA helicase RuvA [Methylobacterium sp. 4-46]
 gi|229560104|sp|B0UA56|RUVA_METS4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|168193455|gb|ACA15402.1| Holliday junction DNA helicase RuvA [Methylobacterium sp. 4-46]
          Length = 205

 Score =  165 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 87/206 (42%), Positives = 128/206 (62%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++   ED+V++DV GV Y ++C  RTL  L   G+   L +ET +R+D IRL
Sbjct: 1   MIGKLKGVVDSYGEDFVILDVHGVGYEVHCSARTLQRLPPAGEATDLAIETVVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF SD +R+WF LLQ+VQGVG RVA+G+LS +   EL  +I   +   +A+ PG+  ++
Sbjct: 61  YGFRSDAEREWFRLLQTVQGVGTRVALGLLSVLEPAELATAIATGDKGAVARAPGVGPRL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+R++ ELK KA + + V    +      +A     P    +AISALVNLGY Q QA+ A
Sbjct: 121 AARLVAELKDKAPAFAPVDPALVRLAGAVEARTAPQP--VADAISALVNLGYPQAQASAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + L+     A+   +IRL LR ++
Sbjct: 179 VAAALQSAGAEAEAKTLIRLGLRELA 204


>gi|261821379|ref|YP_003259485.1| Holliday junction DNA helicase RuvA [Pectobacterium wasabiae
           WPP163]
 gi|261605392|gb|ACX87878.1| Holliday junction DNA helicase RuvA [Pectobacterium wasabiae
           WPP163]
          Length = 205

 Score =  165 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 104/206 (50%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+  GV Y ++ P+     L ++     +F +  +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPQVLIEANGVGYEVHMPMTCFYELPELNQEAIIFTQFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  L  V GVG ++A+ +LS ++AT+ V ++  +    + ++PG+  K 
Sbjct: 61  FGFNDKQERALFRELIKVNGVGPKLALAILSGMSATQFVSAVEREEIGALIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMS--CVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   LS  +   +S   +    +    +    + A +ALV LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLSGDLFNPVSDIPLASPASADSRVGEPEVEAAAALVALGYKPQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             +  + +     AD   +IR ALRA
Sbjct: 181 RMISKIAR---PDADCETLIRDALRA 203


>gi|15891225|ref|NP_356897.1| Holliday junction DNA helicase motor protein [Agrobacterium
           tumefaciens str. C58]
 gi|22001979|sp|Q8U9K5|RUVA_AGRT5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|15159588|gb|AAK89682.1| Holliday junction DNA helicase RuvA [Agrobacterium tumefaciens str.
           C58]
          Length = 205

 Score =  165 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 96/206 (46%), Positives = 142/206 (68%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG+IE +  DYVL+DV GVCY+ YC  RTLS +G +G+   LF+ET++R+DQ++L
Sbjct: 1   MIGKLKGSIEEIGADYVLVDVHGVCYVAYCSARTLSKIGSVGEAVVLFIETYVREDQLKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+S L+R+WF LLQSVQGVG++VA+ VLS ++ +EL  +I LQ+  +I++ PGI  K+
Sbjct: 61  FGFVSALEREWFNLLQSVQGVGSKVALAVLSTLSPSELANAIALQDKTMISRAPGIGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++TEL+ KA + +      +    +    + S P    +A+SAL NLGY +DQA  A
Sbjct: 121 AVRLVTELRNKAPAFAGDASASIGLKQELGEGVASAP--VADAVSALTNLGYSRDQAANA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + LK      D +++IRL L+ +S
Sbjct: 179 VAAALKNGGEGGDSAKLIRLGLKELS 204


>gi|268589737|ref|ZP_06123958.1| holliday junction DNA helicase RuvA [Providencia rettgeri DSM 1131]
 gi|291314889|gb|EFE55342.1| holliday junction DNA helicase RuvA [Providencia rettgeri DSM 1131]
          Length = 205

 Score =  165 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 106/206 (51%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VL+++QGV Y ++ P+     L +IG    +F    +R+D   L
Sbjct: 1   MIGRLRGIVLEKQPPIVLLELQGVGYEVHMPMTCFYELPEIGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V +I  +    + ++PGI  K 
Sbjct: 61  YGFNDKQERALFKELIKVNGVGPKLALAILSGMSAQQFVSAIEQEAIASLVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN--KEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   L+  +    S +N     + + +M      A +AL+ LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNQNSDINLPSVNSKVPNMADIEAEAAAALIALGYKPQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             V  V K     +D   +IR ALRA
Sbjct: 181 RMVSKVAK---PDSDSETLIRDALRA 203


>gi|88801662|ref|ZP_01117190.1| Holliday junction DNA helicase motor protein [Polaribacter irgensii
           23-P]
 gi|88782320|gb|EAR13497.1| Holliday junction DNA helicase motor protein [Polaribacter irgensii
           23-P]
          Length = 193

 Score =  165 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 108/205 (52%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +       V++D  GV Y+++  + T + L    +   L+    +R+D   L
Sbjct: 1   MITQVRGRLVEKNPTEVVVDCNGVGYLLHISLNTYAALPA-DENVVLYTHLSVREDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF++  +R  F  L SV GVG  +A  +LS +TA E+ ++I  +N  +I  + GI  K 
Sbjct: 60  FGFINKTERAIFKFLISVSGVGPSIARTMLSSMTAEEIQQAIASENVALIQSVKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K +    + +  MS  N  +            A+SAL  LG+ + Q+   
Sbjct: 120 AQRVIVDLKDKIVKTFDLDEVSMSPSNTNKG----------EALSALEVLGFQRKQSDKL 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +++K+  N A   QII+LAL+++
Sbjct: 170 VATIVKEYPN-ATIEQIIKLALKSL 193


>gi|238021644|ref|ZP_04602070.1| hypothetical protein GCWU000324_01546 [Kingella oralis ATCC 51147]
 gi|237866258|gb|EEP67300.1| hypothetical protein GCWU000324_01546 [Kingella oralis ATCC 51147]
          Length = 195

 Score =  165 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +   +   + IDV G+ Y +   ++T   L  IGD   ++ +  +R+D   L
Sbjct: 1   MITHLTGKLAEKHPPQITIDVNGIGYELEVSMQTFYQLPNIGDSLHIYTQLIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  L  V G+GA+ A+G+LS  +A EL  +I  ++ K ++  PGI  K 
Sbjct: 61  FGFAGKAERATFRQLVKVSGIGAKTALGILSAFSADELAAAIAQEDIKRLSAAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK    S       +            P  + + IS L+ LGY + +A  A
Sbjct: 121 AERMILELRGKLAPTSGEATGLFA--------PAVTPDASEDIISTLLALGYNEREARAA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +        D  + +RLAL+ +
Sbjct: 173 TKGI----PADTDVGEGVRLALKNL 193


>gi|239817626|ref|YP_002946536.1| Holliday junction DNA helicase RuvA [Variovorax paradoxus S110]
 gi|259495659|sp|C5CM11|RUVA_VARPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|239804203|gb|ACS21270.1| Holliday junction DNA helicase RuvA [Variovorax paradoxus S110]
          Length = 190

 Score =  165 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 94/206 (45%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +       V++D  GV Y +  P+ T   L   G+  +L     +R+D   L
Sbjct: 1   MIGKLTGILAERNPPQVVVDCNGVGYEVDVPMSTFYNLPGTGERVSLLTHFVVREDAQIL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  + GVG R A+G+LS ++  EL ++I  Q    + +IPGI  K 
Sbjct: 61  YGFGTAEERAAFRQLIKISGVGPRTALGLLSGMSVGELSQAITTQELGRLVKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R              +++              +      + + ALV LGY   +A  A
Sbjct: 121 AER-------------LLLELKGKLGADIGLPAHAATDAQADILQALVALGYSDKEAALA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + ++       A  S+ I+LAL+A++
Sbjct: 168 LKAL----PKDATVSEGIKLALKALA 189


>gi|53720506|ref|YP_109492.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           K96243]
 gi|53726199|ref|YP_103912.1| Holliday junction DNA helicase RuvA [Burkholderia mallei ATCC
           23344]
 gi|67642316|ref|ZP_00441074.1| Holliday junction DNA helicase RuvA [Burkholderia mallei GB8 horse
           4]
 gi|76809765|ref|YP_334777.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           1710b]
 gi|121600711|ref|YP_991618.1| Holliday junction DNA helicase RuvA [Burkholderia mallei SAVP1]
 gi|124384917|ref|YP_001027114.1| Holliday junction DNA helicase RuvA [Burkholderia mallei NCTC
           10229]
 gi|126438536|ref|YP_001060376.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 668]
 gi|126450738|ref|YP_001082059.1| Holliday junction DNA helicase RuvA [Burkholderia mallei NCTC
           10247]
 gi|126453529|ref|YP_001067637.1| Holliday junction DNA helicase motor protein [Burkholderia
           pseudomallei 1106a]
 gi|134280414|ref|ZP_01767125.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 305]
 gi|167000504|ref|ZP_02266316.1| Holliday junction DNA helicase RuvA [Burkholderia mallei PRL-20]
 gi|167721174|ref|ZP_02404410.1| Holliday junction DNA helicase motor protein [Burkholderia
           pseudomallei DM98]
 gi|167740150|ref|ZP_02412924.1| Holliday junction DNA helicase motor protein [Burkholderia
           pseudomallei 14]
 gi|167817363|ref|ZP_02449043.1| Holliday junction DNA helicase motor protein [Burkholderia
           pseudomallei 91]
 gi|167825771|ref|ZP_02457242.1| Holliday junction DNA helicase motor protein [Burkholderia
           pseudomallei 9]
 gi|167895840|ref|ZP_02483242.1| Holliday junction DNA helicase motor protein [Burkholderia
           pseudomallei 7894]
 gi|167904231|ref|ZP_02491436.1| Holliday junction DNA helicase motor protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167912490|ref|ZP_02499581.1| Holliday junction DNA helicase motor protein [Burkholderia
           pseudomallei 112]
 gi|167920442|ref|ZP_02507533.1| Holliday junction DNA helicase motor protein [Burkholderia
           pseudomallei BCC215]
 gi|217421175|ref|ZP_03452680.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 576]
 gi|226198378|ref|ZP_03793947.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           Pakistan 9]
 gi|237813764|ref|YP_002898215.1| holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           MSHR346]
 gi|242317479|ref|ZP_04816495.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           1106b]
 gi|254178754|ref|ZP_04885408.1| Holliday junction DNA helicase RuvA [Burkholderia mallei ATCC
           10399]
 gi|254180688|ref|ZP_04887286.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           1655]
 gi|254191517|ref|ZP_04898020.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254194815|ref|ZP_04901245.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei S13]
 gi|254202624|ref|ZP_04908987.1| Holliday junction DNA helicase RuvA [Burkholderia mallei FMH]
 gi|254207963|ref|ZP_04914313.1| Holliday junction DNA helicase RuvA [Burkholderia mallei JHU]
 gi|254260441|ref|ZP_04951495.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           1710a]
 gi|254299226|ref|ZP_04966676.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           406e]
 gi|254355897|ref|ZP_04972175.1| Holliday junction DNA helicase RuvA [Burkholderia mallei
           2002721280]
 gi|81379105|sp|Q63QX6|RUVA_BURPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|81604343|sp|Q62HA8|RUVA_BURMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|90134634|sp|Q3JNS6|RUVA_BURP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230525|sp|A3MP73|RUVA_BURM7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230526|sp|A2S595|RUVA_BURM9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230527|sp|A1V065|RUVA_BURMS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230528|sp|A3NZ66|RUVA_BURP0 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230529|sp|A3NDF5|RUVA_BURP6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|52210920|emb|CAH36908.1| holliday junction DNA helicase [Burkholderia pseudomallei K96243]
 gi|52429622|gb|AAU50215.1| Holliday junction DNA helicase RuvA [Burkholderia mallei ATCC
           23344]
 gi|76579218|gb|ABA48693.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           1710b]
 gi|121229521|gb|ABM52039.1| Holliday junction DNA helicase RuvA [Burkholderia mallei SAVP1]
 gi|124292937|gb|ABN02206.1| Holliday junction DNA helicase RuvA [Burkholderia mallei NCTC
           10229]
 gi|126218029|gb|ABN81535.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 668]
 gi|126227171|gb|ABN90711.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           1106a]
 gi|126243608|gb|ABO06701.1| Holliday junction DNA helicase RuvA [Burkholderia mallei NCTC
           10247]
 gi|134248421|gb|EBA48504.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 305]
 gi|147746871|gb|EDK53948.1| Holliday junction DNA helicase RuvA [Burkholderia mallei FMH]
 gi|147751857|gb|EDK58924.1| Holliday junction DNA helicase RuvA [Burkholderia mallei JHU]
 gi|148024872|gb|EDK83050.1| Holliday junction DNA helicase RuvA [Burkholderia mallei
           2002721280]
 gi|157808883|gb|EDO86053.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           406e]
 gi|157939188|gb|EDO94858.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160694668|gb|EDP84676.1| Holliday junction DNA helicase RuvA [Burkholderia mallei ATCC
           10399]
 gi|169651564|gb|EDS84257.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei S13]
 gi|184211227|gb|EDU08270.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           1655]
 gi|217396587|gb|EEC36604.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 576]
 gi|225929561|gb|EEH25579.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           Pakistan 9]
 gi|237505707|gb|ACQ98025.1| holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           MSHR346]
 gi|238523444|gb|EEP86882.1| Holliday junction DNA helicase RuvA [Burkholderia mallei GB8 horse
           4]
 gi|242140718|gb|EES27120.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           1106b]
 gi|243063559|gb|EES45745.1| Holliday junction DNA helicase RuvA [Burkholderia mallei PRL-20]
 gi|254219130|gb|EET08514.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           1710a]
          Length = 193

 Score =  165 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 104/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y +  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGTLLEKNPPHILVDCNGVGYEVDVPMSTFYNLPHTGEKVVLLTQLIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  + GVGAR+A+ VLS ++  EL +++ LQ++  + ++PGI  K 
Sbjct: 61  YGFLTPPERSTFRELLKITGVGARMALAVLSGMSVAELSQAVTLQDAARLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+              ++  +       A   S    A + ++ALV LGY + +A  A
Sbjct: 121 AERL-----------LLELKGKLGADLGPLAGAASPSDHATDILNALVALGYSEKEALAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +V          S+ I+L+L+A+S
Sbjct: 170 IKNV----PAGTGVSEGIKLSLKALS 191


>gi|297569179|ref|YP_003690523.1| Holliday junction DNA helicase RuvA [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925094|gb|ADH85904.1| Holliday junction DNA helicase RuvA [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 215

 Score =  165 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 58/215 (26%), Positives = 100/215 (46%), Gaps = 9/215 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     D +++ V GV Y ++ P      L  +G+   L+++T +R+D   L
Sbjct: 1   MIASLQGKLAHKGPDSLVLQVGGVGYEVFLPASRHDRLPAVGEELFLYIQTVVREDSFNL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +++ F LL  V GVG R+AM +L+      L  +II  +   + ++PG+  K 
Sbjct: 61  YGFPDSREKRMFQLLLGVSGVGPRLAMNILAAAEPAALSRAIIAGDIVFLKKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS-------MPSFAINAISALVNLGYG 173
           A R+  EL  K     +      + V    A   S             +A SAL+NLGY 
Sbjct: 121 AERLCLELGDKMEFFPTATTDAGTVVGPGAALSPSSAAAADFNEPSFQDAYSALLNLGYP 180

Query: 174 QDQATTAVVSVLKKEKNIAD--DSQIIRLALRAIS 206
             QA  A+  +        +    +++R ALR+++
Sbjct: 181 ASQARAALEGLRSAADVSLELPVEELLRQALRSLA 215


>gi|212711936|ref|ZP_03320064.1| hypothetical protein PROVALCAL_03011 [Providencia alcalifaciens DSM
           30120]
 gi|212685458|gb|EEB44986.1| hypothetical protein PROVALCAL_03011 [Providencia alcalifaciens DSM
           30120]
          Length = 205

 Score =  165 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 106/206 (51%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VL+++QGV Y ++ P+     L +IG    +F    +R+D   L
Sbjct: 1   MIGRLRGIVLEKQPPIVLLELQGVGYEVHMPMTCFYELPEIGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V +I  +    + ++PGI  K 
Sbjct: 61  YGFNDKQERALFKELIKVNGVGPKLALAILSGMSAQQFVSAIEQEAISSLVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN--KEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   L+  +   +S ++    ++   S       A +AL+ LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNSVSDIDLPSVKSQGPSQADIEAEAAAALIALGYKPQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             V  V K     +D   +IR ALRA
Sbjct: 181 RMVSKVAK---PDSDSETLIRDALRA 203


>gi|237746839|ref|ZP_04577319.1| holliday junction DNA helicase subunit RuvA [Oxalobacter formigenes
           HOxBLS]
 gi|229378190|gb|EEO28281.1| holliday junction DNA helicase subunit RuvA [Oxalobacter formigenes
           HOxBLS]
          Length = 193

 Score =  165 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 104/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       +L+D QGV Y I  P+ T   L  +G+  TLF    +R+D   L
Sbjct: 1   MIGRIHGTLLQKNPPQLLVDCQGVGYEIDVPMSTFYNLPAVGENVTLFTHLAIREDAHVL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L  + G+GAR+A+ +LS ++  E+ +++ LQ++  + +IPGI  K 
Sbjct: 61  YGFGSLDERTLFRQLVRITGIGARIALALLSGLSVAEMAQAVALQDATRLTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK               +   A          +  +AL+ LGY + +  TA
Sbjct: 121 AERLLLELKGKFD-----------SASLTAAPSAVSNDSMTDIQNALLALGYSEKETLTA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +        + S  I++AL+ +S
Sbjct: 170 IKQI----PADCNVSDGIKMALKTLS 191


>gi|261379647|ref|ZP_05984220.1| holliday junction DNA helicase RuvA [Neisseria subflava NJ9703]
 gi|284798132|gb|EFC53479.1| holliday junction DNA helicase RuvA [Neisseria subflava NJ9703]
          Length = 194

 Score =  165 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       V+IDV GV Y     ++T   L  +G+   L+ +  +R+D   L
Sbjct: 1   MISRLTGKLIEKNPPQVVIDVNGVGYEADVSMQTFYNLPSVGETVHLYTQLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L  V G+GA+ A+G+LS + A EL ++I  ++ K ++  PGI  K 
Sbjct: 61  FGFASAEERATFRQLVKVSGIGAKTALGILSTMNADELAQAIAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK +S           V+       ++   + + I+ L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLVS---------HTVSDGLFAPDAVADESQDIINTLLALGYNEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +        +  + +RLAL+ +
Sbjct: 172 TKGI----PKGTEVGEGVRLALKNL 192


>gi|320352803|ref|YP_004194142.1| Holliday junction DNA helicase RuvA [Desulfobulbus propionicus DSM
           2032]
 gi|320121305|gb|ADW16851.1| Holliday junction DNA helicase RuvA [Desulfobulbus propionicus DSM
           2032]
          Length = 208

 Score =  165 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 60/209 (28%), Positives = 105/209 (50%), Gaps = 6/209 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G ++    +  ++DV GV Y +   +RT   L ++G  C L V+T +R+D I L
Sbjct: 1   MIASLSGLVQWKGPNMAILDVNGVGYELCISVRTYDALPEVGGTCFLLVQTVVREDAISL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++  F+LL +V G+G ++A  +LS I    L  +I  ++   +  +PG+  K 
Sbjct: 61  YGFSRKEEKDLFLLLITVSGIGPKLAQTILSGIGVEALCGAITAKDLSQLTALPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+  EL  K   + + +  + +                 +A SAL+NLGY Q  A  A
Sbjct: 121 AQRLCVELGEKVGGIGAGLAIEGTPP---LVAPAGDSQVMADAASALINLGYPQAIAWQA 177

Query: 181 VVSVLKKEKNIAD---DSQIIRLALRAIS 206
           + +V ++     D     ++IR ALR+++
Sbjct: 178 LRNVEQQLPPGTDAPRVEELIRQALRSLA 206


>gi|284039351|ref|YP_003389281.1| Holliday junction DNA helicase RuvA [Spirosoma linguale DSM 74]
 gi|283818644|gb|ADB40482.1| Holliday junction DNA helicase RuvA [Spirosoma linguale DSM 74]
          Length = 198

 Score =  165 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 59/204 (28%), Positives = 95/204 (46%), Gaps = 7/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +      +V+IDV GV Y ++  ++T + L   GD   LF+    R+D   L
Sbjct: 1   MIAYLDGTLSHKEATHVIIDVHGVGYSVHISLQTYAVLPGGGDRIKLFIHHLFREDSQSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++  F+ L  V GVG   A+G+LS +   +L  +I+ +N + +  I GI  K 
Sbjct: 61  YGFANADEKSLFLDLIGVSGVGPNTALGMLSAMQPGDLRLAILGENVRAVQAIKGIGAKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL+ K      V                +       +++ALV LG+ +  A  +
Sbjct: 121 AQRIILELRDKMKRAGVVPDGPS------YRQQAAANPVREESLAALVALGFPKPTAEKS 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V   LK +        +IR ALR 
Sbjct: 175 VDDALKADP-ALSVEDVIRRALRQ 197


>gi|261343863|ref|ZP_05971508.1| holliday junction DNA helicase RuvA [Providencia rustigianii DSM
           4541]
 gi|282568250|gb|EFB73785.1| holliday junction DNA helicase RuvA [Providencia rustigianii DSM
           4541]
          Length = 205

 Score =  165 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 105/206 (50%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VL+++QGV Y ++ P+     L  IG    +F    +R+D   L
Sbjct: 1   MIGRLRGIVLEKQPPIVLLELQGVGYEVHMPMTCFYELPDIGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V +I  +    + ++PGI  K 
Sbjct: 61  YGFNDKQERALFKELIKVNGVGPKLALAILSGMSAQQFVSAIEQEAISSLVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN--KEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ E+K +   L+  +   +S ++    ++   S       A +AL+ LGY   +A+
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNPISDIDLPSVKSKGPSQADIEAEAAAALIALGYKPQEAS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204
             V  V K     +D   +IR ALRA
Sbjct: 181 RMVSKVAK---PDSDSETLIRDALRA 203


>gi|313904087|ref|ZP_07837467.1| Holliday junction DNA helicase RuvA [Eubacterium cellulosolvens 6]
 gi|313471236|gb|EFR66558.1| Holliday junction DNA helicase RuvA [Eubacterium cellulosolvens 6]
          Length = 203

 Score =  165 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 64/205 (31%), Positives = 111/205 (54%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG IKG IE + ED V++D  G+ + ++ P  +L+   + G+   L+    ++QD + L
Sbjct: 1   MIGFIKGVIEEITEDSVVVDNNGIGWQVFVPGSSLAGNIRQGEEIKLYTYLSVKQDSLSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  DR+ F+ L  V G+G + A+G+LS ++A +L  +++  ++  IA+ PGI  K 
Sbjct: 61  FGFLNRDDREVFIRLLDVSGIGPKGALGILSVMSADDLRFAVLSDDAAAIAKAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A + + ELK K   L    ++ ++   ++     +      +A+ ALV LGY   +A  A
Sbjct: 121 AQKAVLELKDKF-KLDDAFEKKLAHEQEKAGAAAAQAGAETDAVQALVALGYSGTEAMQA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V        D   I++ AL+ +
Sbjct: 180 VRKV--GAGEDMDSEAILKAALKYL 202


>gi|119896893|ref|YP_932106.1| Holliday junction DNA helicase RuvA [Azoarcus sp. BH72]
 gi|166230515|sp|A1K314|RUVA_AZOSB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|119669306|emb|CAL93219.1| holliday junction DNA helicase [Azoarcus sp. BH72]
          Length = 199

 Score =  165 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 100/206 (48%), Gaps = 9/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       +L+D  GV Y +  P+ T   L   G   +L     +R+D   L
Sbjct: 1   MIGRISGLLLEKNPPQILVDAHGVGYELEVPMSTFYGLPATGTQVSLHTHLAIREDGHFL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +D +R  F  L  V G+GAR A+ VLS ++ ++L +++ LQ +  + +IPGI  K 
Sbjct: 61  YGFATDEERTAFRQLLKVSGIGARTALAVLSGLSVSDLAQAVALQEAGRLVKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K       V        +  A     P    + ++AL+ LGY + +A  A
Sbjct: 121 AERLLLELRDKLGKALPQV-----AGARLAAVAGGAPDAKSDILNALLALGYNEKEALGA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
               +K        S  IR AL+ +S
Sbjct: 176 ----MKGLAEDTGVSDGIRQALKLLS 197


>gi|115526757|ref|YP_783668.1| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris
           BisA53]
 gi|122294484|sp|Q07H96|RUVA_RHOP5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|115520704|gb|ABJ08688.1| Holliday junction DNA helicase subunit RuvA [Rhodopseudomonas
           palustris BisA53]
          Length = 205

 Score =  165 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 94/206 (45%), Positives = 136/206 (66%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+   EDYV++DVQGV Y ++C  RTL  L + G+   L +ET++R+DQI+L
Sbjct: 1   MIGKLKGLIDSYGEDYVILDVQGVGYQVHCASRTLQALPQAGEAAVLSIETYVREDQIKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF SDL+R+WF LLQ+VQGVGA+VA+ VLS +  ++L ++I L++   +A+ PG+  K+
Sbjct: 61  FGFRSDLEREWFRLLQTVQGVGAKVALSVLSTLPPSDLADAIALRDKAAVARTPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA   +SV           +      P    +AISALVNLGYGQ QA  A
Sbjct: 121 AERIVTELKDKAPGFASVDPAVAHLSGAIEERSAPRP--VADAISALVNLGYGQPQAAAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +  +   + A  +Q+I+L L+ +S
Sbjct: 179 IAAAARSAGDAAQTAQLIKLGLKELS 204


>gi|110636455|ref|YP_676662.1| Holliday junction DNA helicase [Cytophaga hutchinsonii ATCC 33406]
 gi|123354887|sp|Q11Z44|RUVA_CYTH3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|110279136|gb|ABG57322.1| Holliday junction DNA helicase subunit RuvA [Cytophaga hutchinsonii
           ATCC 33406]
          Length = 199

 Score =  165 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 60/203 (29%), Positives = 102/203 (50%), Gaps = 6/203 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +      +V++DVQG+ Y I   + T S L  + +   +    H+++D   L
Sbjct: 1   MIAYIEGKLAHKDPTFVVVDVQGIGYHIRVSLHTFSQLKDL-ERVKIHTFLHIKEDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF   ++++ F+ L S+ G+G   A+ VLS +   EL E+I  ++ K I  + GI +K 
Sbjct: 60  FGFADLMEKEMFLHLTSISGIGPGTALVVLSSMNPIELKEAIAREDVKTIQSVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K    + +   D      +Q    S  S    A++AL+ LG+ +  A   
Sbjct: 120 AQRVILELKDKMKKDALLAGSD-----SKQNFSVSHNSIRSEALTALITLGFTKTVAEKN 174

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           +  +LK   N      +I+ AL+
Sbjct: 175 LDLILKGNSNSFTLEDLIKQALK 197


>gi|94309369|ref|YP_582579.1| Holliday junction DNA helicase RuvA [Cupriavidus metallidurans
           CH34]
 gi|123384032|sp|Q1LRB6|RUVA_RALME RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|93353221|gb|ABF07310.1| component of RuvABC resolvasome, regulatory subunit [Cupriavidus
           metallidurans CH34]
          Length = 193

 Score =  165 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 101/206 (49%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L  IG   TL  +  +R+D   L
Sbjct: 1   MIGRIAGTLLEKNPPHLLVDCHGVGYEIDVPMSTFYNLPAIGHPVTLLTQQIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L  + GVGAR+A+ VLS ++  EL +++ +Q +  + +IPGI  K 
Sbjct: 61  FGFATATERNTFRELIKITGVGARMALAVLSGLSVPELAQAVTMQEAGRLTKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+              ++  +            +   A++ ++AL+ LGY + +A  A
Sbjct: 121 AERL-----------LLELKGKLGADLGHAPGATPLADSAVDILNALLALGYSEKEAAQA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  V          S  I+LAL+A+S
Sbjct: 170 IKQV----PAGTGVSDGIKLALKALS 191


>gi|297181902|gb|ADI18079.1| holliday junction resolvasome, DNA-binding subunit [uncultured
           Acidobacteriales bacterium HF0200_23L05]
          Length = 198

 Score =  165 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 102/206 (49%), Gaps = 9/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +       +++D+ GV Y +  P+ T   LG++G    L + TH+R+D + L
Sbjct: 1   MIATLHGVLTEKNPSRLVVDISGVGYEVSVPLSTFYALGELGAEVDLRIHTHVREDALSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + L+   F  L ++ GVG R+A+ VLS +   +L+ +I   +   +  IPG+  K 
Sbjct: 61  FGFATQLEIDLFGRLIAISGVGPRLALAVLSGLEPPDLLRAIQDSDIVRLQGIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  ELK K  S      +     N  +           + +SAL+NLGY +  A  A
Sbjct: 121 AERISLELKDKLPSNVLTEGETKDFKNGTE-------QVRRDVMSALLNLGYHRPLAERA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  VL     +    + +RLALR ++
Sbjct: 174 VKEVLT--GEVHTFEETLRLALRELA 197


>gi|241760730|ref|ZP_04758822.1| holliday junction DNA helicase RuvA [Neisseria flavescens SK114]
 gi|241318911|gb|EER55437.1| holliday junction DNA helicase RuvA [Neisseria flavescens SK114]
          Length = 194

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       V+IDV GV Y     ++T   L  +G+   L+ +  +R+D   L
Sbjct: 1   MISRLTGKLIEKNPPQVVIDVNGVGYEADVSMQTFYNLPSVGEAVHLYTQLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L  V G+GA+ A+G+LS + A EL ++I  ++ K ++  PGI  K 
Sbjct: 61  FGFASAEERATFRQLVKVSGIGAKTALGILSAMNADELAQAIAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK +S           V+       ++   + + I+ L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLVS---------HTVSDGLFAPDAVADESQDIINTLLALGYNEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +        +  + +RLAL+ +
Sbjct: 172 AKGI----PKGTEVGEGVRLALKNL 192


>gi|157371017|ref|YP_001479006.1| Holliday junction DNA helicase RuvA [Serratia proteamaculans 568]
 gi|167012663|sp|A8GFI8|RUVA_SERP5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|157322781|gb|ABV41878.1| Holliday junction DNA helicase RuvA [Serratia proteamaculans 568]
          Length = 203

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 60/204 (29%), Positives = 103/204 (50%), Gaps = 3/204 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L ++G    +F +  +R+D   L
Sbjct: 1   MIGRLRGYILEKQPPLVLLEANGVGYEVHMPMTCFYELPELGQEAIVFTQFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PG+  K 
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAVEREEITSLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +   L+  +  + S +    A   +       A SALV LGY   +A+  
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNSSEITLPTAAQAAELDAEAEAASALVALGYKPQEASRM 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  + K     AD   +IR ALRA
Sbjct: 181 VSKIAK---PGADCETLIRDALRA 201


>gi|255291934|dbj|BAH90422.1| Holliday junction DNA helicase RuvA [uncultured bacterium]
          Length = 190

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 93/206 (45%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +       V+ID  GV Y +  P+ +   L  +G   TL     +R+D   L
Sbjct: 1   MIGHLRGQLAARNPPEVVIDCGGVGYEVLVPMSSFYNLPALGQEVTLLTHLVVREDAQTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L  V GVG R A+ +LS ++A EL +++  Q S  + ++PGI  K 
Sbjct: 61  YGFGSAAERATFRELIKVSGVGPRTALALLSGMSAAELAQAVSAQESGRLTKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R              +++                     + + AL+ LGY   +A  A
Sbjct: 121 AER-------------LLLELKGKLGADLGPQAAPASDAQGDILQALLALGYNDREAAAA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + ++          S+ I+LAL+A++
Sbjct: 168 LKAL----PQDVGVSEGIKLALKALA 189


>gi|319638740|ref|ZP_07993499.1| Holliday junction ATP-dependent DNA helicase ruvA [Neisseria mucosa
           C102]
 gi|317399981|gb|EFV80643.1| Holliday junction ATP-dependent DNA helicase ruvA [Neisseria mucosa
           C102]
          Length = 194

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       V+IDV GV Y     ++T   L  +G+   L+ +  +R+D   L
Sbjct: 1   MISRLTGKLIEKNPPQVVIDVNGVGYEADVSMQTFYNLPSVGETVHLYTQLVIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L  V G+GA+ A+G+LS + A EL +++  ++ K ++  PGI  K 
Sbjct: 61  FGFASAEERATFRQLVKVSGIGAKTALGILSAMNADELAQAVAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK IS           V+       ++   + + I+ L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLIS---------HTVSDGLFAPDAVADKSQDIINTLLALGYNEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +        +  + +RLAL+ +
Sbjct: 172 TKGI----PKGTEVGEGVRLALKNL 192


>gi|317048520|ref|YP_004116168.1| Holliday junction DNA helicase RuvA [Pantoea sp. At-9b]
 gi|316950137|gb|ADU69612.1| Holliday junction DNA helicase RuvA [Pantoea sp. At-9b]
          Length = 204

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++GNI       VLI+  GV Y ++ P+     L ++     +F +  +R+D   L
Sbjct: 1   MIGRLRGNILEKQPPLVLIEAHGVGYEVHMPMTCFYELPELNQEAIIFTQFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L  V GVG ++A+ +LS ++A + V ++  +   V+ ++PG+  K 
Sbjct: 61  FGFNSKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVEKEEIAVLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVV-QQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +   +   +   D +      +           A++ALV LGY   +A+ 
Sbjct: 121 AERLVVEMKDRFKGMHGDLFGGDNAFTLTTPSAAPENNDAEAEAVAALVALGYKPQEASR 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  + +     AD   +IR ALRA
Sbjct: 181 MVSKIGR---PDADCETLIREALRA 202


>gi|53804471|ref|YP_113686.1| Holliday junction DNA helicase RuvA [Methylococcus capsulatus str.
           Bath]
 gi|81682299|sp|Q609L1|RUVA_METCA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|53758232|gb|AAU92523.1| Holliday junction DNA helicase RuvA [Methylococcus capsulatus str.
           Bath]
          Length = 201

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 62/204 (30%), Positives = 100/204 (49%), Gaps = 6/204 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG I+G +       +LIDVQG+ Y +  P+ T   L +IG    L+    +R+D   L
Sbjct: 1   MIGFIRGLLVAKRAPSLLIDVQGLGYELDAPMSTFYNLPEIGAEVRLYTHLQIREDAHSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +R  F  L  V G+GA++A+ +LS I+  +    +  Q+S  + ++PGI  K 
Sbjct: 61  FGFGTEAERGLFRSLIRVSGIGAKLALAILSGISVDDFRACVERQDSARLVRLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +   L   V           A        A  A+SAL+ LG+   +A T 
Sbjct: 121 AERLIIELRDR---LDIGVPSLAPASFAGGAAPLPAADPADEAVSALIALGFKPQEANTL 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V    ++         +IR AL++
Sbjct: 178 VA---RQAAEGRSAEDLIRAALQS 198


>gi|300112852|ref|YP_003759427.1| Holliday junction DNA helicase RuvA [Nitrosococcus watsonii C-113]
 gi|299538789|gb|ADJ27106.1| Holliday junction DNA helicase RuvA [Nitrosococcus watsonii C-113]
          Length = 202

 Score =  164 bits (416), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 100/205 (48%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++L+DVQGV Y +  P+ T   L  +G    L+    +R D   L
Sbjct: 1   MIGRLRGILLEKRAPFLLLDVQGVGYELEAPLSTFYVLPAMGAEVILYTHLVVRDDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           + F S+ +R  F  L  V GVGA++ +G+LS I A      +   ++  + ++PGI  K 
Sbjct: 61  YAFASEKERGLFRSLIRVNGVGAKLGLGILSGIEAESFTRCVQEGDTVSLTRLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ + +      +  ++ +  +             A+SALV LGY  + A+  
Sbjct: 121 AERLIIEMRDRLL---DRPESRIAEMCSDTVDGSVPAGTVAEAVSALVALGYKPNDASRT 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +   +       +IIR +L+ +
Sbjct: 178 VRRL---DTEGLTTEEIIRRSLQRM 199


>gi|295091401|emb|CBK77508.1| Holliday junction DNA helicase subunit RuvA [Clostridium cf.
           saccharolyticum K10]
          Length = 248

 Score =  164 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 100/206 (48%), Gaps = 3/206 (1%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           I  I+G +    +   +++  G+ Y I+ P+  L  L  +G    ++    +R+D + L+
Sbjct: 43  ISYIRGILAEKMDGAAVVEAGGIGYRIFMPLSALELLPAVGQEAVVYTYFQVREDAMSLY 102

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GFL+  DR+ F  L  V G+G + A+G+L  +   +L  +I+  + K I++ PGI  K A
Sbjct: 103 GFLNRQDREMFRQLIGVNGIGPKAALGLLGALRPDDLRLAILTGDVKAISRAPGIGAKTA 162

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS-MPSFAINAISALVNLGYGQDQATTA 180
            RI+ +LK K  +         S    +     S     A  A+ ALV LGY   +A+ A
Sbjct: 163 QRIILDLKDKVSAEEMFPSVTASDGGAKAPEAASLTAEAAREAVDALVALGYSNLEASKA 222

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  V  +     D   +++ +L+ ++
Sbjct: 223 VKQV--EVTEEMDAEAVLKASLKYLA 246


>gi|149927724|ref|ZP_01915976.1| Holliday junction DNA helicase motor protein [Limnobacter sp.
           MED105]
 gi|149823550|gb|EDM82780.1| Holliday junction DNA helicase motor protein [Limnobacter sp.
           MED105]
          Length = 196

 Score =  164 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 99/206 (48%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++KG +      ++L+DVQGV Y +  P+ TL  L +I   CTL     +R+D   L
Sbjct: 1   MIGRLKGTLLEKNAPWILLDVQGVGYELQVPMSTLFNLPEINGSCTLLTHLVVREDAHTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++  F  L  V G+G R A+ +LS I+  + + ++  Q +  + +IPGI  K 
Sbjct: 61  YGFQNIAEKNLFKTLIKVSGIGPRTALAILSSISTNDFLLAVQSQETARLVKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKG+ ++L                 +          + AL  LGY   +A  A
Sbjct: 121 AERLLLELKGQIVALGGTA--------NIAEGMPLPIGNQSEIVQALCALGYSDKEAALA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
                K        +  ++LALR +S
Sbjct: 173 ----CKGLPEGTSVTDGLKLALRNLS 194


>gi|302035797|ref|YP_003796119.1| holliday junction DNA helicase RuvA [Candidatus Nitrospira
           defluvii]
 gi|300603861|emb|CBK40193.1| Holliday junction DNA helicase RuvA [Candidatus Nitrospira
           defluvii]
          Length = 202

 Score =  164 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 102/206 (49%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +       V +DV GV Y +  P+ T   L    +  TL + TH+R+D I+L
Sbjct: 1   MIALLTGLMAFKAPSQVTLDVHGVGYEVLIPLSTYYSLPNQHESVTLSIHTHVREDAIQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +++ F+LL  + G+G ++ + VLS ++  +L  +I   + + +  + GI  K 
Sbjct: 61  YGFLTTAEKEAFLLLTGISGIGPKLGLSVLSTLSVRDLFSAIQAGDIEKLGTVSGIGKKS 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI  ELK K   L    +Q  S   +             +A+SALVNLGY Q     A
Sbjct: 121 AARIALELKDKVARLYPAGEQSTSGSGQ------PAHPLYDDALSALVNLGYRQPDVKEA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  + K          +IR AL+ ++
Sbjct: 175 LKRIEKSGAMAQGLEGVIREALKDLA 200


>gi|197119680|ref|YP_002140107.1| Holliday junction DNA helicase RuvA [Geobacter bemidjiensis Bem]
 gi|226698732|sp|B5EAH2|RUVA_GEOBB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|197089040|gb|ACH40311.1| Holliday junction DNA helicase RuvA [Geobacter bemidjiensis Bem]
          Length = 199

 Score =  164 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 101/205 (49%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +     +++++DV GV Y ++ P  T   L   G   +L + T +++D I L
Sbjct: 1   MIALLTGKLAYKSPEFIILDVNGVGYQVHIPFSTYYTLPVEGGALSLQIHTSVKEDAINL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +++ F LL  V GVG ++A G+LS    +EL +S++  N   ++ IPGI  K 
Sbjct: 61  YGFRTQQEKELFQLLIGVSGVGPKLATGILSNSEPSELADSLVNGNLARLSAIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K   L     Q             +      + +SAL+NLGY +     A
Sbjct: 121 AERLVLELKEKMKKLGLAQPQAGGTT------APAKQEIRDDVLSALINLGYKEAVVQKA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +  K    A    +++ AL+ +
Sbjct: 175 LAEL--KVTEDATVELVLKQALKIL 197


>gi|84687718|ref|ZP_01015591.1| Holliday junction DNA helicase motor protein [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84664301|gb|EAQ10792.1| Holliday junction DNA helicase motor protein [Rhodobacterales
           bacterium HTCC2654]
          Length = 222

 Score =  164 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 70/220 (31%), Positives = 121/220 (55%), Gaps = 15/220 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G I+   +D+VLIDV+GV YI++   RTL+ L   G+   L+ +  +R+D ++L
Sbjct: 1   MIGKLSGRIDYKGDDHVLIDVRGVGYIVHVSDRTLAGLPGPGEAVALYTDMIVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF S ++++WF LL +VQG+GA+ A  +L  + A  +  +I L +   +    G+  K 
Sbjct: 61  HGFTSLVEKEWFRLLMTVQGIGAKAATAILGTLGADGVSRAIALGDWNAVKAAKGLGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKE--------------QAHICSMPSFAINAISA 166
           A R++ ELK KA ++ ++         ++              +A           A+SA
Sbjct: 121 AQRVVNELKDKAPTIMAMGAGQTVSAPEDVLVESDATPVAAAPRAAPKPANMAQPEALSA 180

Query: 167 LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           L NLGYG  +A +AV + L  + ++ D +++IR AL+ ++
Sbjct: 181 LANLGYGPGEAASAVATALGDDPDL-DTAKLIRAALKLLA 219


>gi|312797266|ref|YP_004030188.1| Holliday junction DNA helicase ruvA [Burkholderia rhizoxinica HKI
           454]
 gi|312169041|emb|CBW76044.1| Holliday junction DNA helicase ruvA [Burkholderia rhizoxinica HKI
           454]
          Length = 193

 Score =  164 bits (415), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 105/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y +  P+ T   L   GD  TL  +  +R+D   L
Sbjct: 1   MIGRIAGTLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPGTGDKITLLTQLIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +RQ F  L  + G+GAR+A+ VLS ++ ++L +++  Q++  + ++PGI  K 
Sbjct: 61  YGFLTQQERQTFRELLKISGIGARMALAVLSGMSVSDLAQTVTQQDTARLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+              ++  +       A   S    A + + AL++LGY + +A  A
Sbjct: 121 AERL-----------LLELKGKLGADIGAAASAASSSDHAPDILHALLSLGYSEKEALAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +V          S  I+LAL+A+S
Sbjct: 170 IKNV----PAGTGVSDGIKLALKALS 191


>gi|238898994|ref|YP_002924676.1| Holliday junction helicase, subunit A [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|259495647|sp|C4K7I5|RUVA_HAMD5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229466754|gb|ACQ68528.1| Holliday junction helicase, subunit A [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 204

 Score =  164 bits (415), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 104/205 (50%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++KG I      ++L+D+QG+ Y I  P+     L ++G    +F    +R+D   L
Sbjct: 1   MISRMKGIILEKQPPWILLDIQGMGYDIQLPMTCFYQLPELGQEAIIFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++ + +LS +++ E + ++  ++   + ++PG+  K 
Sbjct: 61  YGFHHPKERAMFSELIKVNGVGPKLGLAILSGMSSEEFICALEKEDISNLIKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC-SMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +  +L+  + +  +           S  S    AISAL++LGY   +A  
Sbjct: 121 AERLLVEMKDRIKNLNKNLFKSTADHMLSSVSTDLSAKSAEAEAISALISLGYKPQEAAQ 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            + ++ +      D   +I+ ALR+
Sbjct: 181 LIKNIAQ---PDLDSQALIKHALRS 202


>gi|225011142|ref|ZP_03701604.1| Holliday junction DNA helicase RuvA [Flavobacteria bacterium
           MS024-3C]
 gi|225004704|gb|EEG42664.1| Holliday junction DNA helicase RuvA [Flavobacteria bacterium
           MS024-3C]
          Length = 193

 Score =  164 bits (415), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 98/205 (47%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +       ++++  GV Y+++  + T S L    +  +++    +++D   L
Sbjct: 1   MITHLRGKLVEKNPTEIVVECGGVGYLVHISLHTYSLLPSE-EAVSIYTHLQVKEDSHSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   +R  F LL SV G+GA  A  +LS ++  EL ++I   N   I  + GI +K 
Sbjct: 60  YGFMEVSERAIFRLLISVSGIGANTARTMLSSLSPEELRDAIAASNVGTIQSVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K + +  + +                 +    A+SAL  LG+ + Q+   
Sbjct: 120 AQRVIIELKDKILKIYDLEE----------LSTPLDNTNKEEALSALEVLGFARKQSEKM 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +LK   ++     II+  L+ +
Sbjct: 170 VEKILKASPSL-SVEDIIKQTLKGL 193


>gi|150026160|ref|YP_001296986.1| Holliday junction DNA helicase RuvA [Flavobacterium psychrophilum
           JIP02/86]
 gi|166230550|sp|A6H1G0|RUVA_FLAPJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|149772701|emb|CAL44184.1| Holliday junction DNA helicase RuvA [Flavobacterium psychrophilum
           JIP02/86]
          Length = 193

 Score =  164 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +       V+ID  GV Y +   + T   L    DF  LF    +++D   L
Sbjct: 1   MIAHIQGKLVEKSPTEVVIDCNGVGYHVNISLHTYGLLPTT-DFVKLFTHLIIKEDSHSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +++ F LL SV G+GA +A  +LS I   +++ +I   +   I  I GI +K 
Sbjct: 60  YGFAEKSEKEIFKLLISVSGIGANIARTMLSSIEPKQIINAIGSGDVGTIQSIKGIGVKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R + +LK K + L  +          +Q  I    +    A+SAL  LG+ +  A   
Sbjct: 120 AQRTIIDLKEKVLKLYDL----------DQVSISQSNTNKDEALSALEVLGFIRKSAEKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  ++    + A    II+ AL+ +
Sbjct: 170 VEKIVATMPD-ATVETIIKQALKNL 193


>gi|294789135|ref|ZP_06754374.1| holliday junction DNA helicase RuvA [Simonsiella muelleri ATCC
           29453]
 gi|294482876|gb|EFG30564.1| holliday junction DNA helicase RuvA [Simonsiella muelleri ATCC
           29453]
          Length = 195

 Score =  164 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 103/205 (50%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +       ++IDV GV Y +   ++T   L  +G+   L+ +  +R+D   L
Sbjct: 1   MISRLRGTLIDKTPPQIVIDVNGVGYEVDVSMQTFYALPALGETVQLYTQLAVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  L  V G+GA+ A+G+LS ++  +L  +I  ++ K ++  P +  K 
Sbjct: 61  FGFADLAERATFRQLVKVSGIGAKTALGILSALSPDDLAAAIASEDVKKLSSAPSVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK     S+    +        H  +    + + +S L+ LGY + ++  A
Sbjct: 121 AERMILELRGKLTVSGSLKDDLL--------HATASVDNSEDVVSTLLALGYNEKESRLA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +        D S+ ++LAL+ +
Sbjct: 173 VKGLAAD----VDVSEGVKLALKNL 193


>gi|319795920|ref|YP_004157560.1| holliday junction DNA helicase ruva [Variovorax paradoxus EPS]
 gi|315598383|gb|ADU39449.1| Holliday junction DNA helicase RuvA [Variovorax paradoxus EPS]
          Length = 190

 Score =  164 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +       V++D  GV Y +  P+ T   L   G+  +L     +R+D   L
Sbjct: 1   MIGKLTGVLAERNPPQVVVDCNGVGYEVDVPMSTFYNLPGTGERVSLLTHFVVREDAQIL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  + GVG R A+G+LS ++  EL ++I  Q    + +IPGI  K 
Sbjct: 61  YGFGTAEERAAFRQLIKITGVGPRTALGLLSGMSVGELSQAITTQELGRLVKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R              +++              +      + + AL+ LGY   +A  A
Sbjct: 121 AER-------------LLLELKGKLGADIGLPTHAASDAQADILQALIALGYSDKEAALA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + ++       A  S+ I+LAL+A++
Sbjct: 168 LKAL----PKDATVSEGIKLALKALA 189


>gi|163850397|ref|YP_001638440.1| Holliday junction DNA helicase motor protein [Methylobacterium
           extorquens PA1]
 gi|218528957|ref|YP_002419773.1| Holliday junction DNA helicase RuvA [Methylobacterium
           chloromethanicum CM4]
 gi|240137474|ref|YP_002961945.1| Holliday junction ATP-dependent DNA helicase ruvA [Methylobacterium
           extorquens AM1]
 gi|229560101|sp|A9W1B3|RUVA_METEP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254766970|sp|B7L255|RUVA_METC4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|163662002|gb|ABY29369.1| Holliday junction DNA helicase RuvA [Methylobacterium extorquens
           PA1]
 gi|218521260|gb|ACK81845.1| Holliday junction DNA helicase RuvA [Methylobacterium
           chloromethanicum CM4]
 gi|240007442|gb|ACS38668.1| Holliday junction ATP-dependent DNA helicase ruvA [Methylobacterium
           extorquens AM1]
          Length = 208

 Score =  164 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 86/209 (41%), Positives = 130/209 (62%), Gaps = 5/209 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++   ED+V++DV GV Y+++C  RTL  L K G+   L +ETH+R+D IRL
Sbjct: 1   MIGKLKGIVDSYGEDFVILDVNGVGYVVHCSARTLQRLPKPGEATDLAIETHVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +R+WF LLQ+VQGVG RVA+GVLS +   +L  +I   +   +A+ PG+  ++
Sbjct: 61  YGFRVDAEREWFRLLQTVQGVGTRVALGVLSVLEPAQLATAIATGDKGAVARAPGVGPRL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+R++ ELK KA + + +    ++     +      P    +AISALVNLGY Q QA+ A
Sbjct: 121 AARLVAELKDKAPAFAPIDPALIALTGAVEDRTAPQP--VADAISALVNLGYAQIQASAA 178

Query: 181 VVSVLKKEKNIADDSQ---IIRLALRAIS 206
           + + LK     A   +   +IRL LR ++
Sbjct: 179 IAAALKGLGEEAGTVEAKTLIRLGLRELA 207


>gi|153008543|ref|YP_001369758.1| Holliday junction DNA helicase RuvA [Ochrobactrum anthropi ATCC
           49188]
 gi|166230577|sp|A6WY75|RUVA_OCHA4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|151560431|gb|ABS13929.1| Holliday junction DNA helicase RuvA [Ochrobactrum anthropi ATCC
           49188]
          Length = 205

 Score =  164 bits (414), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 90/206 (43%), Positives = 140/206 (67%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + ED+ +IDV GV Y+ +C  RTL  LG +G+   LF+ET++R+D IRL
Sbjct: 1   MIGKLKGVIDEIAEDHAVIDVHGVGYVAFCSARTLGNLGGVGEAAILFIETYVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + L+R+WF LLQ+VQGVGA+VA+ VL  ++ +EL  +I L++  ++++ PG+  K+
Sbjct: 61  YGFANQLEREWFRLLQNVQGVGAKVALAVLGTLSPSELANAIALRDIAMVSRAPGVGKKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA + +      +    K++    + P+   +A+SAL NLGY +DQA  A
Sbjct: 121 AERIVTELKNKAPAFAGDASGTIGL--KQELGAGAAPAPVADAVSALSNLGYSRDQAANA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + LK+    AD +++IRL L+ +S
Sbjct: 179 VAAALKEAGENADSAKLIRLGLKELS 204


>gi|118594338|ref|ZP_01551685.1| Holliday junction DNA helicase RuvA [Methylophilales bacterium
           HTCC2181]
 gi|118440116|gb|EAV46743.1| Holliday junction DNA helicase RuvA [Methylophilales bacterium
           HTCC2181]
          Length = 193

 Score =  164 bits (414), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 100/206 (48%), Gaps = 16/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+IKG +       +LID QGV Y I  P+ T   L   G   TL     +R+D   L
Sbjct: 1   MIGRIKGYLLEKIPPIILIDCQGVGYEIEVPMTTFFDLPDEGSEITLLTHLIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +RQ F  L  V G+GA+VA+ +L  I +++L ++I   +  ++ +IPGI  K 
Sbjct: 61  FGFATAAERQMFRQLIKVNGIGAKVALSILGSIGSSDLADAIQHDDINMLVKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +   L                 +    +   +  +AL++LGY    A+ A
Sbjct: 121 AERLVLELKDRLKDLH------------IDPSVKKHATHIEDIENALISLGYSAKDASMA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +          +  IR AL+++S
Sbjct: 169 IKLL----PENISINDGIRQALKSLS 190


>gi|239832790|ref|ZP_04681119.1| Holliday junction DNA helicase RuvA [Ochrobactrum intermedium LMG
           3301]
 gi|239825057|gb|EEQ96625.1| Holliday junction DNA helicase RuvA [Ochrobactrum intermedium LMG
           3301]
          Length = 205

 Score =  164 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 90/206 (43%), Positives = 138/206 (66%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + ED+ +IDV GV Y  +C  RTL  LG  G+   LF+ET++R+D IRL
Sbjct: 1   MIGKLKGVIDEIAEDHAVIDVHGVGYAAFCSARTLGNLGGAGEAAVLFIETYVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + L+R+WF LLQ+VQGVGA+VA+ VL  ++ +EL  +I L++  ++++ PG+  K+
Sbjct: 61  YGFANQLEREWFRLLQNVQGVGAKVALAVLGTLSPSELANAIALRDIAMVSRAPGVGKKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA + +      +    K++    + P+   +A+SAL NLGY +DQA  A
Sbjct: 121 AERIVTELKNKAPAFAGDASGTIGL--KQELGAGAAPAPVADAVSALSNLGYSRDQAANA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + LK+    AD +++IRL L+ +S
Sbjct: 179 VAAALKEAGENADSAKLIRLGLKELS 204


>gi|163855209|ref|YP_001629507.1| Holliday junction DNA helicase RuvA [Bordetella petrii DSM 12804]
 gi|229560006|sp|A9I8F2|RUVA_BORPD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|163258937|emb|CAP41236.1| holliday junction DNA helicase [Bordetella petrii]
          Length = 190

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 105/205 (51%), Gaps = 17/205 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       + +DV G+ Y I  P+ TL  L ++G   TL     +R+D   L
Sbjct: 1   MIGRITGTLIEKLPPTICVDVNGLGYDIEVPMSTLYALPELGARVTLHTHLTVREDAHIL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+GAR A+ VLS ++ ++L ++I LQ S  + ++PGI  K 
Sbjct: 61  YGFATAAERGAFRELIKVSGIGARTALSVLSGLSVSDLAQAITLQESGRLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++GK  +                A   ++P    + ++AL+ LGY   ++  A
Sbjct: 121 AERLLLEMRGKLGA-------------DIGATAHAVPDSQTDILNALLALGYSDKESQAA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +          S+ IRLAL+A+
Sbjct: 168 LKKL----PEGTGVSEGIRLALKAL 188


>gi|283796454|ref|ZP_06345607.1| holliday junction DNA helicase RuvA [Clostridium sp. M62/1]
 gi|291075862|gb|EFE13226.1| holliday junction DNA helicase RuvA [Clostridium sp. M62/1]
          Length = 248

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 101/206 (49%), Gaps = 3/206 (1%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           I  I+G +    +   +++  G+ Y I+ P+  L  L  +G    ++    +R+D + L+
Sbjct: 43  ISYIRGILAEKMDGAAVVEAGGIGYRIFMPLSALELLPAVGQEAVVYTYFQVREDAMSLY 102

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GFL+  DR+ F  L  V G+G + A+G+L  +   +L  +I+  + K I++ PGI  K A
Sbjct: 103 GFLNRQDREMFRQLIGVNGIGPKAALGLLGALRPDDLRLAILTGDVKAISRAPGIGAKTA 162

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS-MPSFAINAISALVNLGYGQDQATTA 180
            RI+ +LK K  +   +     S    +     S     A  A+ ALV LGY   +A+ A
Sbjct: 163 QRIILDLKDKVSAEEILASVTASDGGAKAPEAASLTAEAAREAVDALVALGYSNLEASKA 222

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  V  +     D   +++ +L+ ++
Sbjct: 223 VKQV--EVTEEMDAEAVLKASLKYLA 246


>gi|313239182|emb|CBY14141.1| unnamed protein product [Oikopleura dioica]
          Length = 202

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 95/205 (46%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +       V+++V GV Y +  P+ +   L  IG    L     +R+D   L
Sbjct: 1   MITFLHGRLVDALPTQVVVEVHGVGYEVLIPLSSFDRLPGIGQEIHLLTHLTVREDAHTL 60

Query: 61  FGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +GF++  +R+ F LL  +V G+G R+A+ VLS +  T    ++   + + ++QI G+  K
Sbjct: 61  YGFVTGAERELFRLLVHTVTGIGPRIALNVLSGMPPTAFRSAVATGDIRALSQISGVGRK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ ELK K  S +++                       +A+ ALV LG+ Q +A  
Sbjct: 121 TAERIIVELKDKVGSAAALETTGPGRT------AGPTEKAVHDAVLALVALGFKQPEAFE 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V +        A   Q++R  L+ 
Sbjct: 175 TVRAAQAALGPQATVEQLVRAGLKK 199


>gi|331000258|ref|ZP_08323942.1| Holliday junction DNA helicase RuvA [Parasutterella
           excrementihominis YIT 11859]
 gi|329572424|gb|EGG54077.1| Holliday junction DNA helicase RuvA [Parasutterella
           excrementihominis YIT 11859]
          Length = 189

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 97/206 (47%), Gaps = 20/206 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G I       V+I+  G+ Y I  P+ T   L  IG+   L     +R+D   L
Sbjct: 1   MIATIRGKILQKNPPQVVIECGGLGYEIDVPMSTFYNLPNIGEEVFLETVMIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++  F  L  V G+G R+++ +LS ++A ++  +I      ++  +PGI  K 
Sbjct: 61  YGFLTSQEKSVFRQLLKVSGIGPRISLAMLSSMSAEDIGNAIANNEIGLLTMVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K +                     ++ S     I ALV LG+ + +A  A
Sbjct: 121 AERLVLELKDKMV----------------VTSAPTVSSVQTEVIQALVALGFSEREARGA 164

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
             +V       AD S+ IRL LR ++
Sbjct: 165 AKNV----PADADASEGIRLCLRQLA 186


>gi|303241604|ref|ZP_07328103.1| Holliday junction DNA helicase RuvA [Acetivibrio cellulolyticus
           CD2]
 gi|302590824|gb|EFL60573.1| Holliday junction DNA helicase RuvA [Acetivibrio cellulolyticus
           CD2]
          Length = 202

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 104/206 (50%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I+G +E  + +Y++++  GV Y IY  + T+  +  IG    ++   ++R+D + L
Sbjct: 1   MFAYIRGKLEYKHNEYIVVEANGVGYKIYTSLSTIQNVESIGSEVKIYTHLYVREDIMSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +   F LL  V GVG + A+ V+S ++ ++   S+I  + K + +  GI  K+
Sbjct: 61  YGFLTQEEMGMFELLLGVSGVGPKAAISVISSMSPSKFGLSVITDDYKSLTKAQGIGNKM 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K      V                +  S    AISALV LGY   +A+ A
Sbjct: 121 AQRIILELKDKIDKTDMVTS---FNGKDGAIPANNDNSRVSEAISALVVLGYTATEASKA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V SV     +  D   II+ AL+ ++
Sbjct: 178 VASVYS---DDMDLECIIKSALKGLA 200


>gi|319943009|ref|ZP_08017292.1| crossover junction ATP-dependent DNA helicase RuvA [Lautropia
           mirabilis ATCC 51599]
 gi|319743551|gb|EFV95955.1| crossover junction ATP-dependent DNA helicase RuvA [Lautropia
           mirabilis ATCC 51599]
          Length = 195

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 102/205 (49%), Gaps = 14/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       +L+D  GV Y I  P+ TL  L   G   TL+    +R+D   L
Sbjct: 1   MIGRIHGTLVLANPPEILVDAHGVGYEISVPMSTLYELPPPGQTVTLWTHLVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL++ +R  F  +  V G+G R+A+ VLS ++  +L  ++  Q +  + ++PG+  K 
Sbjct: 61  YGFLTESERTAFRAMIRVSGIGPRMALAVLSGLSVDDLSRAVAEQETGRLTRVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK               +  Q +  ++ S   + + AL+ LGY + ++  A
Sbjct: 121 AERLLLELKGKL----------ALASSGIQINDQALFSSGDDILRALLALGYSEKESNAA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +        + +  IR AL+ +
Sbjct: 171 IAKL----PEGVNVNDGIRQALKLL 191


>gi|306841422|ref|ZP_07474124.1| Holliday junction DNA helicase RuvA [Brucella sp. BO2]
 gi|306288528|gb|EFM59880.1| Holliday junction DNA helicase RuvA [Brucella sp. BO2]
          Length = 205

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 90/206 (43%), Positives = 139/206 (67%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + ED+ +IDV GV Y+ +C  RTL  LG  G+   LF+ET++R+D IRL
Sbjct: 1   MIGKLKGVIDEIAEDHAVIDVHGVGYVAFCSARTLGNLGGAGEAAILFIETYVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + L+R+WF LLQ+VQGVGA+VA+ VL  ++ +EL  +I L++  ++++ PG+  K+
Sbjct: 61  YGFATQLEREWFRLLQNVQGVGAKVALAVLGTLSPSELANAIALRDIAMVSRAPGVGKKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA + +      +    K++    + P+   +A+SAL NLGY +DQA  A
Sbjct: 121 AERIVTELKNKAPAFAGDASGTIGL--KQELGAGAAPAPVADAVSALSNLGYSRDQAANA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + LK+    AD +++IRL L+ +S
Sbjct: 179 VAAALKEAGEGADSAKLIRLGLKELS 204


>gi|294678733|ref|YP_003579348.1| holliday junction DNA helicase RuvA [Rhodobacter capsulatus SB
           1003]
 gi|294477553|gb|ADE86941.1| holliday junction DNA helicase RuvA [Rhodobacter capsulatus SB
           1003]
          Length = 222

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 71/220 (32%), Positives = 118/220 (53%), Gaps = 15/220 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G I     D+VLIDV+GV YI++   RT + L  +G+ C L+ E  +R+D ++L
Sbjct: 1   MIGRIAGVILHRAMDHVLIDVRGVGYIVHVSSRTAANLPPVGEACALYTELLVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++W  LL SVQG+GA+ ++ +L  +    +  ++ L +   I   PG+  K+
Sbjct: 61  FGFPTLIEKEWHRLLTSVQGIGAKASLAILGTLGPEGVSRALALGDWNAIKAAPGVGPKL 120

Query: 121 ASRIMTELKGKAISL--------------SSVVQQDMSCVNKEQAHICSMPSFAINAISA 166
           A R++ ELK KA ++               ++++     V +         +F   A+SA
Sbjct: 121 AQRVVMELKDKAPTVMAMGGTLTVDTAPSDALIETAPKPVKRPAPAATRQVNFTAEALSA 180

Query: 167 LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           L NLGY    A TAV     +     D +++IR ALR ++
Sbjct: 181 LTNLGYSPSDAATAVARA-SENPEATDTAKLIRTALRLLA 219


>gi|294635834|ref|ZP_06714289.1| holliday junction DNA helicase RuvA [Edwardsiella tarda ATCC 23685]
 gi|291090806|gb|EFE23367.1| holliday junction DNA helicase RuvA [Edwardsiella tarda ATCC 23685]
          Length = 195

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 55/196 (28%), Positives = 92/196 (46%), Gaps = 4/196 (2%)

Query: 9   IEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLD 68
           I       VL++  GV Y +  P+     L + G    +F    +R+D   L+GF +  +
Sbjct: 2   ILEKQPPQVLLEAGGVGYEVQMPMTCFYELPQPGSEAVIFTHFVVREDAQLLYGFNNKQE 61

Query: 69  RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
           R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PG+  K A R++ E+
Sbjct: 62  RALFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREEVAALIKLPGVGKKTAERLVVEM 121

Query: 129 KGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKE 188
           K +   LS  +    S      A   +       A++AL+ LGY   +A+  V  V    
Sbjct: 122 KDRFKGLSGDLFTP-SDDLPPSAQPQAQADAEGEAVAALIALGYKPQEASRLVNRVAS-- 178

Query: 189 KNIADDSQIIRLALRA 204
              AD   +IR ALRA
Sbjct: 179 -VGADSETLIRDALRA 193


>gi|167837835|ref|ZP_02464718.1| Holliday junction DNA helicase motor protein [Burkholderia
           thailandensis MSMB43]
          Length = 193

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y +  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGTLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPHTGEKVMLLTQLIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  + GVGAR+A+ VLS ++  EL +++ LQ++  + ++PGI  K 
Sbjct: 61  YGFLTPQERSTFRELLKITGVGARMALAVLSGMSVAELSQAVTLQDAARLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+              ++  +       A   S    A + ++AL+ LGY + +A  A
Sbjct: 121 AERL-----------LLELKGKLGADLGPLAGAASPSDHAADILNALLALGYSEKEALAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +V          S+ I+L+L+A+S
Sbjct: 170 IKNV----PAGTGVSEGIKLSLKALS 191


>gi|30248236|ref|NP_840306.1| Holliday junction DNA helicase subunit [Nitrosomonas europaea ATCC
           19718]
 gi|44888448|sp|Q820S3|RUVA_NITEU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|30180121|emb|CAD84123.1| probable Holliday junction DNA helicase subunit [Nitrosomonas
           europaea ATCC 19718]
          Length = 195

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 99/206 (48%), Gaps = 14/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +   +   VL+DV G+ Y I  P+ T   L  IG+  TL     +R+D   L
Sbjct: 1   MIGRIAGLLLEKHPPLVLVDVNGIGYEIDVPMSTFCRLPGIGEQVTLHTHFWVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+++ +R  F  L  + G+GAR  + +LS ++  +L + ++ Q+S  + +IPGI  K 
Sbjct: 61  FGFMTEPERVLFRQLTKISGIGARTGLAILSGLSVNDLHQIVVSQDSTRLTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K              +   +       S   + ++AL  LGY   +A  A
Sbjct: 121 AERLLLELRDKIS----------PAITLPETGTAMASSTDKDILNALSALGYNDREANWA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  +          S  I  +LR +S
Sbjct: 171 VGQL----SEGVTVSDGIMQSLRLLS 192


>gi|90022179|ref|YP_528006.1| Holliday junction DNA helicase subunit RuvA [Saccharophagus
           degradans 2-40]
 gi|122996073|sp|Q21HN5|RUVA_SACD2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|89951779|gb|ABD81794.1| Holliday junction DNA helicase subunit RuvA [Saccharophagus
           degradans 2-40]
          Length = 207

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 53/209 (25%), Positives = 101/209 (48%), Gaps = 7/209 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +      ++LID+ GV Y +  P+ T   L  +G+   L     + +   +L
Sbjct: 1   MIGRLTGILAEKKAPHLLIDIGGVGYDVIAPMTTFYRLPALGEKAVLHTHFSVSETSQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  DR+ F +L  V GVG ++A+G++S  + ++  + ++  N   + ++PG+  K 
Sbjct: 61  FGFSSQQDRELFRMLIKVNGVGPKLAVGIMSMES-SDFAKCVLDGNLTALVKLPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQ----AHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ +++ +  +L +   +               + +      +A SAL+ LGY   +
Sbjct: 120 AERLLVDMRDRVKALDTTPSEHSPTGEGAGIVRVDPVINTNVIIADAESALIGLGYKPTE 179

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A  AV +       I     +IR AL+ +
Sbjct: 180 AAKAVSAAY--NDTITTSEDLIRAALKGM 206


>gi|291538854|emb|CBL11965.1| Holliday junction DNA helicase subunit RuvA [Roseburia intestinalis
           XB6B4]
          Length = 203

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 107/206 (51%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  + E+ ++++  G+ Y IY   +T   L  +G+   ++   H+R+D + L
Sbjct: 1   MYSYIKGILTDMDEESIVVETGGIGYHIYTTGQTFRYLPSVGEEVKVYTYLHVREDAMLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  + + + LL  V G+G + A+ +LS +T  +L  +++  ++K IA+ PG+  K 
Sbjct: 61  FGFLTKDELKIYKLLLGVSGIGPKGALAILSVMTTDDLRFAVLGDDAKAIAKAPGVGAKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K   LS     +       ++           A+ ALV LGY   +A  A
Sbjct: 121 AQRLILELKDK---LSLEDAFEQKFEKTGESTENHASGTKNEAVQALVALGYSSSEALRA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +  +     D  +I+++AL+ ++
Sbjct: 178 LNGI--EITEETDVEEILKMALKKMA 201


>gi|325264009|ref|ZP_08130742.1| holliday junction DNA helicase RuvA [Clostridium sp. D5]
 gi|324031047|gb|EGB92329.1| holliday junction DNA helicase RuvA [Clostridium sp. D5]
          Length = 207

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 102/205 (49%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  +  + V++DV GV Y IY P + +  L + G    +    ++R+D ++L
Sbjct: 8   MISYIRGELAAVETEKVIVDVGGVGYGIYMPGQAMGLLPQPGHEVKIHTYLNVREDAMQL 67

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  D + F L+  V G+G +  + +LS+++  +L  +++  + K I+  PGI  K 
Sbjct: 68  FGFLTRDDLEVFKLVIGVSGIGPKGGLNILSQLSPDDLRFAVMAGDVKAISAAPGIGKKT 127

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK K   LS       +      A   +       A+ ALV LGYG  ++  A
Sbjct: 128 AEKLIIELKDK---LSIEDVLTHAAEGSAAAVPVNNGGIQSEAVQALVALGYGSTESLRA 184

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V            +++ AL+ +
Sbjct: 185 VKQVELDNP---TVEDVLKEALKKM 206


>gi|254719706|ref|ZP_05181517.1| Holliday junction DNA helicase RuvA [Brucella sp. 83/13]
 gi|265984721|ref|ZP_06097456.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella sp.
           83/13]
 gi|306837835|ref|ZP_07470697.1| Holliday junction DNA helicase RuvA [Brucella sp. NF 2653]
 gi|264663313|gb|EEZ33574.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella sp.
           83/13]
 gi|306407074|gb|EFM63291.1| Holliday junction DNA helicase RuvA [Brucella sp. NF 2653]
          Length = 205

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 90/206 (43%), Positives = 139/206 (67%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + ED+ +IDV GV Y+ +C  RTL  LG  G+   LF+ET++R+D IRL
Sbjct: 1   MIGKLKGVIDEIAEDHAVIDVHGVGYVAFCSARTLGNLGGAGEAAILFIETYVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + L+R+WF LLQ+VQGVGA+VA+ VL  ++ +EL  +I L++  ++++ PG+  K+
Sbjct: 61  YGFATQLEREWFRLLQNVQGVGAKVALAVLGTLSPSELANAIALRDIAMVSRAPGVGKKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA + +      +    K++    + P+   +A+SAL NLGY +DQA  A
Sbjct: 121 AERIVTELKNKAPAFAGEASGTIGL--KQELGAGAAPAPVADAVSALSNLGYSRDQAANA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + LK+    AD +++IRL L+ +S
Sbjct: 179 VAAALKEAGEGADSAKLIRLGLKELS 204


>gi|331663357|ref|ZP_08364267.1| holliday junction DNA helicase RuvA [Escherichia coli TA143]
 gi|331059156|gb|EGI31133.1| holliday junction DNA helicase RuvA [Escherichia coli TA143]
          Length = 188

 Score =  163 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 52/188 (27%), Positives = 91/188 (48%), Gaps = 3/188 (1%)

Query: 17  VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76
           VLI+V GV Y ++ P+     L + G    +F    +R+D   L+GF +  +R  F  L 
Sbjct: 2   VLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELI 61

Query: 77  SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136
              GVG ++A+ +LS ++A + V ++  +    + ++PGI  K A R++ E+K +   L 
Sbjct: 62  KTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGLH 121

Query: 137 SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQ 196
             +    + +        +       A++ALV LGY   +A+  V  + +     A    
Sbjct: 122 GDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRMVSKIAR---PDASSET 178

Query: 197 IIRLALRA 204
           +IR ALRA
Sbjct: 179 LIREALRA 186


>gi|21243875|ref|NP_643457.1| Holliday junction DNA helicase RuvA [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|294626863|ref|ZP_06705455.1| Holliday junction DNA helicase motor protein [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|294665404|ref|ZP_06730692.1| Holliday junction DNA helicase motor protein [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|24212375|sp|Q8PHV0|RUVA_XANAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|21109477|gb|AAM37993.1| holliday junction binding protein DNA helicase [Xanthomonas
           axonopodis pv. citri str. 306]
 gi|292598877|gb|EFF43022.1| Holliday junction DNA helicase motor protein [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|292604815|gb|EFF48178.1| Holliday junction DNA helicase motor protein [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
          Length = 194

 Score =  163 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 60/204 (29%), Positives = 95/204 (46%), Gaps = 13/204 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      +++IDV GV Y +  P+ T   L  +G    LF     ++D + L
Sbjct: 1   MIGRLRGILAYKQPPWLVIDVGGVGYELEAPMSTFYDLPDVGRDVILFTHYAQKEDSVSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + +R+ F  +Q V G+GA++A+ VLS ++  E    I   +   + +IPGI  K 
Sbjct: 61  YGFLREGERRLFRDVQKVTGIGAKIALAVLSGVSVDEFARLITSGDITALTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +A   SS                   P     A  AL  LGY   +A   
Sbjct: 121 AERMVVELRDRAADFSSGAP----------ITGQLGPDAVSEATVALQQLGYKPAEAARM 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
                 +   +A     IR AL+A
Sbjct: 171 ARDAGAEGDEVATV---IRKALQA 191


>gi|303258188|ref|ZP_07344195.1| holliday junction DNA helicase RuvA [Burkholderiales bacterium
           1_1_47]
 gi|302858941|gb|EFL82025.1| holliday junction DNA helicase RuvA [Burkholderiales bacterium
           1_1_47]
          Length = 189

 Score =  163 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 97/206 (47%), Gaps = 20/206 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G I       V+++  G+ Y I  P+ T   L  IG+   L     +R+D   L
Sbjct: 1   MIATIRGKILQKNPPQVVVECGGLGYEIDVPMSTFYNLPNIGEEVFLETVMIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++  F  L  V G+G R+++ +LS ++A ++  +I      ++  +PGI  K 
Sbjct: 61  YGFLTSQEKSVFRQLLKVSGIGPRISLAMLSSMSAEDIGNAIANNEIGLLTMVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K +                     ++ S     I ALV LG+ + +A  A
Sbjct: 121 AERLVLELKDKMV----------------VTSAPTVSSVQTEVIQALVALGFSEREARGA 164

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
             +V       AD S+ IRL LR ++
Sbjct: 165 AKNV----PADADASEGIRLCLRQLA 186


>gi|126663097|ref|ZP_01734095.1| Holliday junction DNA helicase [Flavobacteria bacterium BAL38]
 gi|126624755|gb|EAZ95445.1| Holliday junction DNA helicase [Flavobacteria bacterium BAL38]
          Length = 193

 Score =  163 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 100/205 (48%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +       V+ID  GV Y I   + T S L    +   LF    +++D   L
Sbjct: 1   MIAHIQGRLVEKTPTEVIIDCNGVGYHINISLHTYSLLPDS-ESLKLFTFLQIKEDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   +R+ F LL SV GVGA +A  +LS +  ++++++I   +   +  + GI  K 
Sbjct: 60  YGFVEKQERELFKLLISVSGVGASIARTMLSSLAPSQIIQAIASNDIGTMQSMKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K + +           N ++  +    +    A+SAL  LG+ +  A   
Sbjct: 120 AQRIILDLKEKVLKVY----------NLDEVSVIESNTNKDEALSALEVLGFARKAAEKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  ++++  N A    +I+ AL+ +
Sbjct: 170 IDKIIRETPN-ATVENLIKQALKNL 193


>gi|300770096|ref|ZP_07079975.1| crossover junction ATP-dependent DNA helicase RuvA
           [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762572|gb|EFK59389.1| crossover junction ATP-dependent DNA helicase RuvA
           [Sphingobacterium spiritivorum ATCC 33861]
          Length = 194

 Score =  163 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 103/205 (50%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M     G +      +V++DV G+ Y I+  + T S L K  + C LF+   +R+D   L
Sbjct: 1   MYEYFNGKLVFKAPTHVVLDVNGIGYYIHISLNTFS-LIKDQENCKLFISFQVREDSQTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +RQ F  L SV G+G      +LS IT  E+  +II     VI +I GI  K 
Sbjct: 60  FGFANEGERQLFEHLISVSGIGPNTGRMILSSITPEEIQSAIINGQVAVIQKIKGIGPKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K               +   + + S  S    A+SAL+ LG+ ++QA   
Sbjct: 120 AQRLILELQDKLKKQGP---------DALISPVASKQSVPEEALSALIMLGFVKNQAEKV 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +++  E ++    Q+I+LAL+ +
Sbjct: 171 LNTIINTEPDL-SVEQLIKLALKRL 194


>gi|323702066|ref|ZP_08113734.1| Holliday junction DNA helicase RuvA [Desulfotomaculum nigrificans
           DSM 574]
 gi|323532948|gb|EGB22819.1| Holliday junction DNA helicase RuvA [Desulfotomaculum nigrificans
           DSM 574]
          Length = 199

 Score =  163 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 102/206 (49%), Gaps = 10/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +  +   +V++DV G+ Y +Y P  T   L   G     +    +R+D I++
Sbjct: 1   MIAYIKGKLAYIGAGWVVVDVNGIGYRLYIPAMT--KLPSTGQEVQFYTHMAVREDGIQI 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + + + F+ L  V GVG +VA+ V++ +        I   N   + ++PG+  K 
Sbjct: 59  YGFLQEEELECFLALLDVAGVGPKVALAVVAHLPPGVFKGIIASGNVNQLVKVPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RIM ELK K    +++ +         +    +      +A+ AL++LGY Q++A  A
Sbjct: 119 AQRIMLELKDKLRGPAALPEPS-------ETITPAPGRIEDDAVVALLSLGYAQNEAREA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V   +       D S +I+ AL+ ++
Sbjct: 172 VRQAM-GLGLTGDVSALIKAALKELA 196


>gi|313677422|ref|YP_004055418.1| holliday junction DNA helicase ruva [Marivirga tractuosa DSM 4126]
 gi|312944120|gb|ADR23310.1| Holliday junction DNA helicase RuvA [Marivirga tractuosa DSM 4126]
          Length = 197

 Score =  163 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 60/204 (29%), Positives = 100/204 (49%), Gaps = 8/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG+I  L   +++I+V GV Y +  P+ T     K      +    H+++D   L
Sbjct: 1   MISYLKGSIIELEPTHLIIEVGGVGYHVIIPMSTYDAF-KSQKEVKVLTHFHVKEDSQTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F+ L  + G+G   A+G+LS +   E+  SI+ +N K I  I GI  K 
Sbjct: 60  YGFYLPEERTVFLDLIGISGIGPSTAIGMLSAMNPNEIKSSIVAENVKQIQSIKGIGGKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +      + +   S          S  S    A+SAL+NLG+ ++ A   
Sbjct: 120 AQRVILELKDRYKKEGLITESTQSSG-------VSNNSLRNEALSALINLGFAKNSAEKV 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           +  +L+  K      Q+I+ AL++
Sbjct: 173 IDKILQANKENITLEQLIKQALKS 196


>gi|17986616|ref|NP_539250.1| Holliday junction DNA helicase RuvA [Brucella melitensis bv. 1 str.
           16M]
 gi|23502561|ref|NP_698688.1| Holliday junction DNA helicase RuvA [Brucella suis 1330]
 gi|62290575|ref|YP_222368.1| Holliday junction DNA helicase RuvA [Brucella abortus bv. 1 str.
           9-941]
 gi|82700491|ref|YP_415065.1| Holliday junction DNA helicase RuvA [Brucella melitensis biovar
           Abortus 2308]
 gi|148560383|ref|YP_001259556.1| Holliday junction DNA helicase RuvA [Brucella ovis ATCC 25840]
 gi|161619632|ref|YP_001593519.1| Holliday junction DNA helicase motor protein [Brucella canis ATCC
           23365]
 gi|163845283|ref|YP_001622938.1| Holliday junction DNA helicase RuvA [Brucella suis ATCC 23445]
 gi|189024793|ref|YP_001935561.1| Holliday junction DNA helicase RuvA [Brucella abortus S19]
 gi|225628272|ref|ZP_03786306.1| Holliday junction DNA helicase RuvA [Brucella ceti str. Cudo]
 gi|225853159|ref|YP_002733392.1| Holliday junction DNA helicase RuvA [Brucella melitensis ATCC
           23457]
 gi|237816080|ref|ZP_04595076.1| Holliday junction DNA helicase RuvA [Brucella abortus str. 2308 A]
 gi|254689871|ref|ZP_05153125.1| Holliday junction DNA helicase RuvA [Brucella abortus bv. 6 str.
           870]
 gi|254694364|ref|ZP_05156192.1| Holliday junction DNA helicase RuvA [Brucella abortus bv. 3 str.
           Tulya]
 gi|254698022|ref|ZP_05159850.1| Holliday junction DNA helicase RuvA [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254700364|ref|ZP_05162192.1| Holliday junction DNA helicase RuvA [Brucella suis bv. 5 str. 513]
 gi|254703482|ref|ZP_05165310.1| Holliday junction DNA helicase RuvA [Brucella suis bv. 3 str. 686]
 gi|254708429|ref|ZP_05170257.1| Holliday junction DNA helicase RuvA [Brucella pinnipedialis
           M163/99/10]
 gi|254708717|ref|ZP_05170528.1| Holliday junction DNA helicase RuvA [Brucella pinnipedialis B2/94]
 gi|254714564|ref|ZP_05176375.1| Holliday junction DNA helicase RuvA [Brucella ceti M644/93/1]
 gi|254717461|ref|ZP_05179272.1| Holliday junction DNA helicase RuvA [Brucella ceti M13/05/1]
 gi|254730906|ref|ZP_05189484.1| Holliday junction DNA helicase RuvA [Brucella abortus bv. 4 str.
           292]
 gi|256030243|ref|ZP_05443857.1| Holliday junction DNA helicase RuvA [Brucella pinnipedialis
           M292/94/1]
 gi|256045313|ref|ZP_05448207.1| Holliday junction DNA helicase RuvA [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256061740|ref|ZP_05451877.1| Holliday junction DNA helicase RuvA [Brucella neotomae 5K33]
 gi|256114271|ref|ZP_05455016.1| Holliday junction DNA helicase RuvA [Brucella melitensis bv. 3 str.
           Ether]
 gi|256255624|ref|ZP_05461160.1| Holliday junction DNA helicase RuvA [Brucella ceti B1/94]
 gi|256258125|ref|ZP_05463661.1| Holliday junction DNA helicase RuvA [Brucella abortus bv. 9 str.
           C68]
 gi|256263350|ref|ZP_05465882.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella
           melitensis bv. 2 str. 63/9]
 gi|260167918|ref|ZP_05754729.1| Holliday junction DNA helicase RuvA [Brucella sp. F5/99]
 gi|260547181|ref|ZP_05822919.1| bacterial DNA recombination protein [Brucella abortus NCTC 8038]
 gi|260565796|ref|ZP_05836279.1| Holliday junction ATP-dependent DNA helicase ruvA [Brucella
           melitensis bv. 1 str. 16M]
 gi|260568788|ref|ZP_05839256.1| bacterial DNA recombination protein [Brucella suis bv. 4 str. 40]
 gi|260755403|ref|ZP_05867751.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus
           bv. 6 str. 870]
 gi|260758625|ref|ZP_05870973.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus
           bv. 4 str. 292]
 gi|260762457|ref|ZP_05874794.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260884418|ref|ZP_05896032.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus
           bv. 9 str. C68]
 gi|261214674|ref|ZP_05928955.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus
           bv. 3 str. Tulya]
 gi|261219293|ref|ZP_05933574.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella ceti
           M13/05/1]
 gi|261222827|ref|ZP_05937108.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella ceti
           B1/94]
 gi|261315928|ref|ZP_05955125.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella
           pinnipedialis M163/99/10]
 gi|261316209|ref|ZP_05955406.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella
           pinnipedialis B2/94]
 gi|261322354|ref|ZP_05961551.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella ceti
           M644/93/1]
 gi|261325744|ref|ZP_05964941.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella
           neotomae 5K33]
 gi|261750859|ref|ZP_05994568.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella suis
           bv. 5 str. 513]
 gi|261754112|ref|ZP_05997821.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella suis
           bv. 3 str. 686]
 gi|261757357|ref|ZP_06001066.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella sp.
           F5/99]
 gi|265987271|ref|ZP_06099828.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella
           pinnipedialis M292/94/1]
 gi|265991738|ref|ZP_06104295.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|265995575|ref|ZP_06108132.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella
           melitensis bv. 3 str. Ether]
 gi|294850954|ref|ZP_06791630.1| Holliday junction DNA helicase RuvA [Brucella sp. NVSL 07-0026]
 gi|297248974|ref|ZP_06932682.1| Holliday junction DNA helicase RuvA [Brucella abortus bv. 5 str.
           B3196]
 gi|54039571|sp|P66743|RUVA_BRUSU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|54042200|sp|P66742|RUVA_BRUME RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|75496341|sp|Q57BH7|RUVA_BRUAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|123740945|sp|Q2YRD1|RUVA_BRUA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230523|sp|A5VS59|RUVA_BRUO2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189045743|sp|A9M7K1|RUVA_BRUC2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189045744|sp|A9WWI0|RUVA_BRUSI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560007|sp|B2S7E0|RUVA_BRUA1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254766948|sp|C0REW6|RUVA_BRUMB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|17982229|gb|AAL51514.1| holliday junction DNA helicase ruva [Brucella melitensis bv. 1 str.
           16M]
 gi|23348562|gb|AAN30603.1| Holliday junction DNA helicase RuvA [Brucella suis 1330]
 gi|62196707|gb|AAX75007.1| RuvA, Holliday junction DNA helicase [Brucella abortus bv. 1 str.
           9-941]
 gi|82616592|emb|CAJ11671.1| Bacterial DNA recombination protein, RuvA:Helix-hairpin-helix
           DNA-binding, class 1 [Brucella melitensis biovar Abortus
           2308]
 gi|148371640|gb|ABQ61619.1| holliday junction DNA helicase RuvA [Brucella ovis ATCC 25840]
 gi|161336443|gb|ABX62748.1| Holliday junction DNA helicase RuvA [Brucella canis ATCC 23365]
 gi|163676006|gb|ABY40116.1| Holliday junction DNA helicase RuvA [Brucella suis ATCC 23445]
 gi|189020365|gb|ACD73087.1| Bacterial DNA recombination protein, RuvA [Brucella abortus S19]
 gi|225616118|gb|EEH13166.1| Holliday junction DNA helicase RuvA [Brucella ceti str. Cudo]
 gi|225641524|gb|ACO01438.1| Holliday junction DNA helicase RuvA [Brucella melitensis ATCC
           23457]
 gi|237788743|gb|EEP62955.1| Holliday junction DNA helicase RuvA [Brucella abortus str. 2308 A]
 gi|260095546|gb|EEW79424.1| bacterial DNA recombination protein [Brucella abortus NCTC 8038]
 gi|260151169|gb|EEW86264.1| Holliday junction ATP-dependent DNA helicase ruvA [Brucella
           melitensis bv. 1 str. 16M]
 gi|260154172|gb|EEW89254.1| bacterial DNA recombination protein [Brucella suis bv. 4 str. 40]
 gi|260668943|gb|EEX55883.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus
           bv. 4 str. 292]
 gi|260672883|gb|EEX59704.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260675511|gb|EEX62332.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus
           bv. 6 str. 870]
 gi|260873946|gb|EEX81015.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus
           bv. 9 str. C68]
 gi|260916281|gb|EEX83142.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus
           bv. 3 str. Tulya]
 gi|260921411|gb|EEX88064.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella ceti
           B1/94]
 gi|260924382|gb|EEX90950.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella ceti
           M13/05/1]
 gi|261295044|gb|EEX98540.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella ceti
           M644/93/1]
 gi|261295432|gb|EEX98928.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella
           pinnipedialis B2/94]
 gi|261301724|gb|EEY05221.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella
           neotomae 5K33]
 gi|261304954|gb|EEY08451.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella
           pinnipedialis M163/99/10]
 gi|261737341|gb|EEY25337.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella sp.
           F5/99]
 gi|261740612|gb|EEY28538.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella suis
           bv. 5 str. 513]
 gi|261743865|gb|EEY31791.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella suis
           bv. 3 str. 686]
 gi|262766859|gb|EEZ12477.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella
           melitensis bv. 3 str. Ether]
 gi|263002694|gb|EEZ15097.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263093349|gb|EEZ17418.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella
           melitensis bv. 2 str. 63/9]
 gi|264659468|gb|EEZ29729.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella
           pinnipedialis M292/94/1]
 gi|294821597|gb|EFG38593.1| Holliday junction DNA helicase RuvA [Brucella sp. NVSL 07-0026]
 gi|297174107|gb|EFH33464.1| Holliday junction DNA helicase RuvA [Brucella abortus bv. 5 str.
           B3196]
 gi|326409716|gb|ADZ66781.1| Bacterial DNA recombination protein, RuvA [Brucella melitensis M28]
 gi|326539423|gb|ADZ87638.1| holliday junction DNA helicase RuvA [Brucella melitensis M5-90]
          Length = 205

 Score =  163 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 90/206 (43%), Positives = 139/206 (67%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + ED+ +IDV GV Y+ +C  RTL  LG  G+   LF+ET++R+D IRL
Sbjct: 1   MIGKLKGVIDEIAEDHAVIDVHGVGYVAFCSARTLGNLGGAGEAAILFIETYVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + L+R+WF LLQ+VQGVGA+VA+ VL  ++ +EL  +I L++  ++++ PG+  K+
Sbjct: 61  YGFATQLEREWFRLLQNVQGVGAKVALAVLGTLSPSELANAIALRDIAMVSRAPGVGKKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA + +      +    K++    + P+   +A+SAL NLGY +DQA  A
Sbjct: 121 AERIVTELKNKAPAFAGEASGTIGL--KQELGAGAAPAPVADAVSALSNLGYSRDQAANA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + LK+    AD +++IRL L+ +S
Sbjct: 179 VAAALKETGEGADSAKLIRLGLKELS 204


>gi|171915820|ref|ZP_02931290.1| Holliday junction DNA helicase motor protein [Verrucomicrobium
           spinosum DSM 4136]
          Length = 203

 Score =  163 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 98/206 (47%), Gaps = 4/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G++     + + +DV GV Y+   P+ T   L        L    ++ +    L
Sbjct: 1   MIAYLRGHLVEALPNQLTVDVNGVGYLCLVPLSTYDRLAGTQGEVRLLTHLNITERDHTL 60

Query: 61  FGFLSDLDRQWFMLLQS-VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           FGF +  +R  F LL + V G+G ++A+ VLS +   +  +++I  +   +++I G+  K
Sbjct: 61  FGFATAEERDLFRLLINRVSGIGPKMALAVLSGMAVGDFKDNVIRNDVTALSRISGVGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ ELK K   + +      +             +   +A+ AL+ LG+ Q +A  
Sbjct: 121 TAERIVLELKDKVGIVDTW---QAARSTGNSLVPDPTQAAQTDAVLALIALGFKQTEAQK 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            V  ++KK   +    ++IR ALR +
Sbjct: 178 TVQDLVKKAGGVVSADKLIRDALRNL 203


>gi|329118736|ref|ZP_08247436.1| crossover junction ATP-dependent DNA helicase RuvA [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327465171|gb|EGF11456.1| crossover junction ATP-dependent DNA helicase RuvA [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 193

 Score =  163 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 14/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +   +   ++IDV G+ Y     ++T   L  +G+   L+ +  +R+D   L
Sbjct: 1   MISRLTGTLAEKHPPQIVIDVNGIGYEAEVSMQTFCALPPVGETVRLYTQLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  L  V G+GA+ A+G+LS +   EL +++  ++ K ++  PGI  K 
Sbjct: 61  FGFADAEERAAFRQLVKVGGIGAKTALGILSAMNTAELAQAVAQEDVKRLSAAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK                       +      + +  L+ LGY + +A  A
Sbjct: 121 AERMILELRGKL----------APANVSGGLAAPAQQDGGEDIVQTLLALGYSEREARAA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +        +  + +RLAL+ +
Sbjct: 171 AKGI----PPGTEVGEGVRLALKNL 191


>gi|153810824|ref|ZP_01963492.1| hypothetical protein RUMOBE_01208 [Ruminococcus obeum ATCC 29174]
 gi|149833220|gb|EDM88302.1| hypothetical protein RUMOBE_01208 [Ruminococcus obeum ATCC 29174]
          Length = 203

 Score =  163 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 101/205 (49%), Gaps = 2/205 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +    E+ V+++  G+ Y I+    ++  + +I     +     +R+D ++L
Sbjct: 1   MISFIRGLVADTTENAVILENNGIGYEIFMTGSSIEQVSRIDGEVKIHTYFQVREDAMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  D + F LL +V G+G + A+GVL+ +TA EL  +++  + K I++ PGI  K 
Sbjct: 61  YGFLSKDDLEMFRLLLNVNGIGPKAALGVLAGLTADELRFAVLSDDIKTISKAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK K     +  ++              +      A  AL+ LGY    A  A
Sbjct: 121 AQKLILELKDKLKLEDAFEKKLAHEQEAASVSGFLIHDGRQEAAEALIALGYSSTDAMKA 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V     +  D   +++ AL+ +
Sbjct: 181 VRKVTDVSPD--DVEALLKAALKQL 203


>gi|256370112|ref|YP_003107623.1| Holliday junction DNA helicase motor protein [Brucella microti CCM
           4915]
 gi|306844695|ref|ZP_07477280.1| Holliday junction DNA helicase RuvA [Brucella sp. BO1]
 gi|256000275|gb|ACU48674.1| Holliday junction DNA helicase motor protein [Brucella microti CCM
           4915]
 gi|306274867|gb|EFM56637.1| Holliday junction DNA helicase RuvA [Brucella sp. BO1]
          Length = 205

 Score =  163 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 90/206 (43%), Positives = 139/206 (67%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + ED+ +IDV GV Y+ +C  RTL  LG  G+   LF+ET++R+D IRL
Sbjct: 1   MIGKLKGVIDEIAEDHAVIDVHGVGYVAFCSARTLGNLGGAGEAAILFIETYVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + L+R+WF LLQ+VQGVGA+VA+ VL  ++ +EL  +I L++  ++++ PG+  K+
Sbjct: 61  YGFATQLEREWFRLLQNVQGVGAKVALAVLGTLSPSELANAIALRDIAMVSRAPGVGKKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA + +      +    K++    + P+   +A+SAL NLGY +DQA  A
Sbjct: 121 AERIVTELKNKAPAFAGEASGTIGL--KQELGAGAAPAPVADAVSALSNLGYSRDQAANA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + LK+    AD +++IRL L+ +S
Sbjct: 179 VAAALKEAGEGADSAKLIRLGLKELS 204


>gi|290967870|ref|ZP_06559420.1| Holliday junction DNA helicase RuvA [Megasphaera genomosp. type_1
           str. 28L]
 gi|290782009|gb|EFD94587.1| Holliday junction DNA helicase RuvA [Megasphaera genomosp. type_1
           str. 28L]
          Length = 200

 Score =  163 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 73/205 (35%), Positives = 105/205 (51%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG I+G +  ++ +Y  IDV GV Y IY P  TL+ L       TLF   H+R+D I L
Sbjct: 1   MIGYIRGPVTRIFHEYCFIDVHGVGYRIYAPAATLAALVPE-RETTLFTYMHVREDAILL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +   FMLL  V GVG +VA+G+LS +T  E   ++  ++ K + ++PGI  K+
Sbjct: 60  YGFGTQEEYDVFMLLIGVSGVGPKVALGILSAVTPEEFCAAVQRKDLKTLTRMPGIGKKV 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
             RI+ EL  K  SL   +         +        S    A+ AL  LGY + +A TA
Sbjct: 120 GDRILFELHDKVASLQGRIPD-----GADNGEDIDSGSHTDEAVEALRGLGYSESEAQTA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V SV  K+         IR AL+ +
Sbjct: 175 VASVTGKD---LSVEDKIRRALQVL 196


>gi|170693379|ref|ZP_02884538.1| Holliday junction DNA helicase RuvA [Burkholderia graminis C4D1M]
 gi|170141534|gb|EDT09703.1| Holliday junction DNA helicase RuvA [Burkholderia graminis C4D1M]
          Length = 193

 Score =  163 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 108/206 (52%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y +  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGVLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPSTGERVVLLTQMIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  + G+GAR+A+ VLS ++  EL +++ LQ++  + ++PGI  K 
Sbjct: 61  YGFGTAEERSTFRELLKISGIGARMALAVLSGMSVHELSQTVTLQDAARLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK  +    +   +S               A + ++AL+ LGY + +A  A
Sbjct: 121 AERLLLELKGKLGADLGAMAGTVSASGH-----------ASDILNALLALGYSEKEALAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V +V          S+ I+LAL+A+S
Sbjct: 170 VKNV----PAGTGVSEGIKLALKALS 191


>gi|51892298|ref|YP_074989.1| Holliday junction DNA helicase RuvA [Symbiobacterium thermophilum
           IAM 14863]
 gi|81389173|sp|Q67Q98|RUVA_SYMTH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|51855987|dbj|BAD40145.1| Holliday junction DNA helicase RuvA [Symbiobacterium thermophilum
           IAM 14863]
          Length = 205

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 94/205 (45%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     D+V+IDV GV Y    P  T S L   G    L+    +R+D + L
Sbjct: 1   MIAHLRGELVTAGADWVVIDVAGVGYRCLVPASTRSRLPAQGAAVQLYTYLQVREDALTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +   F LL  V GVG +VA+ VLS         ++  ++   I ++PGI  K 
Sbjct: 61  YGFLTQAEYDLFELLLRVDGVGPKVALAVLSTTDPAAFRRAVAFEDLDAICRVPGIGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K     +V        +     +         A  AL+ LGY + +A  A
Sbjct: 121 AQRLVLELKDKIG---AVPAGGGGVPDGLPVAVAPAGDAWAEASEALIALGYSRGEAAAA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  V  +         ++RLAL+ +
Sbjct: 178 LARVRAEAGEAPSVETLVRLALKQL 202


>gi|114327763|ref|YP_744920.1| Holliday junction DNA helicase RuvA [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315937|gb|ABI61997.1| holliday junction DNA helicase ruvA [Granulibacter bethesdensis
           CGDNIH1]
          Length = 204

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 117/206 (56%), Gaps = 4/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G ++GL ED  LIDV GV Y++Y   RTL+ L +  +   + +ET +R+D I L
Sbjct: 1   MIGRLTGLVDGLEEDRCLIDVNGVGYVVYASSRTLAALPRAPEVARVLIETQVREDAITL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+   +R WF LL +VQGVGA+V + +LS ++A +L+ +++  + + + +  G+  ++
Sbjct: 61  FGFIDTAERDWFRLLTTVQGVGAKVGLNILSALSAGDLISALMAGDQRALTRASGVGPRL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI++ELK K  ++          +               + +SAL+NLGY + +A  A
Sbjct: 121 AARIVSELKDKVGAM----PSGPMTIGGVGVLSAPAGGVEQDTLSALLNLGYRRPEALAA 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  V +     A    I+R  LR ++
Sbjct: 177 IRRVREALGEEAGLDAILRQCLRELA 202


>gi|255320811|ref|ZP_05361986.1| holliday junction DNA helicase RuvA [Acinetobacter radioresistens
           SK82]
 gi|262379413|ref|ZP_06072569.1| Holliday junction DNA helicase RuvA [Acinetobacter radioresistens
           SH164]
 gi|255302188|gb|EET81430.1| holliday junction DNA helicase RuvA [Acinetobacter radioresistens
           SK82]
 gi|262298870|gb|EEY86783.1| Holliday junction DNA helicase RuvA [Acinetobacter radioresistens
           SH164]
          Length = 200

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 105/205 (51%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  L    VL++V GV Y I  P+ T   L K G   TL+    +R+D  +L
Sbjct: 1   MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++  F  L  V GVG ++A+G+LS ++   LV +I   +   + +IPG+  K 
Sbjct: 60  YGFSNAQEKTIFRTLLKVNGVGPKMALGILSTLSVELLVHTIEHDDLNTLVKIPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+M EL+ +  +L+       + + + Q       S    A +AL +LGY   +A  A
Sbjct: 120 AERLMIELRDRFKTLAQAATTSSTALPQIQFIA---NSPIAEAEAALQSLGYKPQEAQKA 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +V       AD   +IR AL+++
Sbjct: 177 VAAVKGDFSESAD---LIRAALKSM 198


>gi|269468816|gb|EEZ80420.1| Holliday junction resolvasome, DNA-binding subunit [uncultured
           SUP05 cluster bacterium]
          Length = 195

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 52/203 (25%), Positives = 100/203 (49%), Gaps = 10/203 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G I       +L++V G+ Y I CP+ +   +G   +  +L    H+++D   L
Sbjct: 1   MIGQLTGKILEKNPPEILLEVGGIGYEILCPMSSFYEMGS-NENISLHTHFHVKEDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+S  ++  F  L  V G+G +VA+ +LS +    L+ ++  ++  ++A+ PGI  K 
Sbjct: 60  YGFISKDEKILFRELIRVNGIGPKVALAILSHLNVASLMNAVANEDDALLAKTPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK +   L      ++S    +     +     I A  AL  LG+   +A   
Sbjct: 120 AQKLIVELKDRLEKL------ELSSSAHQIITASNSNPNTIKASQALQALGFKTKEADRM 173

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           + ++     +     ++IR AL+
Sbjct: 174 LNAI---NDDSLSIEELIRKALQ 193


>gi|84623202|ref|YP_450574.1| Holliday junction DNA helicase motor protein [Xanthomonas oryzae
           pv. oryzae MAFF 311018]
 gi|161899002|ref|YP_200300.2| Holliday junction DNA helicase RuvA [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|188577435|ref|YP_001914364.1| Holliday junction DNA helicase RuvA [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|90146231|sp|Q5H2A6|RUVA_XANOR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|123725563|sp|Q2P577|RUVA_XANOM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560139|sp|B2STK2|RUVA_XANOP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|84367142|dbj|BAE68300.1| holliday junction binding protein DNA helicase [Xanthomonas oryzae
           pv. oryzae MAFF 311018]
 gi|188521887|gb|ACD59832.1| holliday junction DNA helicase RuvA [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 194

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 61/204 (29%), Positives = 95/204 (46%), Gaps = 13/204 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      +++IDV GV Y +  P+ T   L  +G    LF     ++D + L
Sbjct: 1   MIGRLRGILAYKQPPWLVIDVGGVGYELEAPMSTFYDLPDVGRDVILFTHYAQKEDSVSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + +R+ F  +Q V G+GA++A+ VLS +T  E    I   +   + +IPGI  K 
Sbjct: 61  YGFLREGERRLFRDVQKVTGIGAKIALAVLSGVTVDEFARLITSGDITALTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +A   SS                   P     A  AL  LGY   +A   
Sbjct: 121 AERMVVELRDRAADFSSGAP----------ITGQLGPDAISEATVALQQLGYKPAEAARM 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
                 +   +A     IR AL+A
Sbjct: 171 ARDAGAEGGEVATV---IRKALQA 191


>gi|78048836|ref|YP_365011.1| Holliday junction DNA helicase RuvA [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325929365|ref|ZP_08190495.1| Holliday junction DNA helicase subunit RuvA [Xanthomonas perforans
           91-118]
 gi|90146217|sp|Q3BQF2|RUVA_XANC5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|78037266|emb|CAJ25011.1| Holliday junction DNA helicase RuvA [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325540277|gb|EGD11889.1| Holliday junction DNA helicase subunit RuvA [Xanthomonas perforans
           91-118]
          Length = 194

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 60/204 (29%), Positives = 95/204 (46%), Gaps = 13/204 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      +++IDV GV Y +  P+ T   L  +G    LF     ++D + L
Sbjct: 1   MIGRLRGILAYKQPPWLVIDVGGVGYELEAPMSTFYDLPDVGRDVILFTHYAQKEDSVAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + +R+ F  +Q V G+GA++A+ VLS ++  E    I   +   + +IPGI  K 
Sbjct: 61  YGFLREGERRLFRDVQKVTGIGAKIALAVLSGVSVDEFARLITSGDITALTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +A   SS                   P     A  AL  LGY   +A   
Sbjct: 121 AERMVVELRDRAADFSSGAP----------ITGQLGPDAVSEATVALQQLGYKPAEAARM 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
                 +   +A     IR AL+A
Sbjct: 171 ARDAGAEGDEVATV---IRKALQA 191


>gi|225077350|ref|ZP_03720549.1| hypothetical protein NEIFLAOT_02410 [Neisseria flavescens
           NRL30031/H210]
 gi|224951342|gb|EEG32551.1| hypothetical protein NEIFLAOT_02410 [Neisseria flavescens
           NRL30031/H210]
          Length = 194

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       V+ID+ GV Y     ++T   L  IG+   L+ +  +R+D   L
Sbjct: 1   MISRLTGKLIEKNPPQVVIDINGVGYEADVSMQTFYNLPPIGETVHLYTQLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L  V G+GA+ A+G+LS + A EL ++I  ++ K ++  PGI  K 
Sbjct: 61  FGFASAEERATFRQLVKVSGIGAKTALGILSAMNADELAQAIAEEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK +S           V+       ++   + + I+ L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLVS---------HTVSDGLFAPAAVADESQDIINTLLALGYNEREAKAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +        +  + +RLAL+ +
Sbjct: 172 TKGI----PKGTEVGEGVRLALKNL 192


>gi|83719212|ref|YP_441795.1| Holliday junction DNA helicase RuvA [Burkholderia thailandensis
           E264]
 gi|167580615|ref|ZP_02373489.1| Holliday junction DNA helicase motor protein [Burkholderia
           thailandensis TXDOH]
 gi|167618721|ref|ZP_02387352.1| Holliday junction DNA helicase motor protein [Burkholderia
           thailandensis Bt4]
 gi|257137961|ref|ZP_05586223.1| Holliday junction DNA helicase RuvA [Burkholderia thailandensis
           E264]
 gi|123753836|sp|Q2SZ54|RUVA_BURTA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|83653037|gb|ABC37100.1| Holliday junction DNA helicase RuvA [Burkholderia thailandensis
           E264]
          Length = 193

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       +L+D  GV Y +  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGTLLEKNPPRILVDCNGVGYEVDVPMSTFYNLPHTGEKVVLLTQLIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  + GVGAR+A+ VLS ++  EL +++ LQ++  + ++PGI  K 
Sbjct: 61  YGFLTPQERSTFRELLKITGVGARMALAVLSGMSVAELSQAVTLQDAARLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+              ++  +       A   S    A + ++AL+ LGY + +A  A
Sbjct: 121 AERL-----------LLELKGKLGADLGPLAGAASPSDHAADILNALLALGYSEKEALAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +V          S+ I+L+L+A+S
Sbjct: 170 IKNV----PAGTGVSEGIKLSLKALS 191


>gi|326799497|ref|YP_004317316.1| Holliday junction ATP-dependent DNA helicase ruvA [Sphingobacterium
           sp. 21]
 gi|326550261|gb|ADZ78646.1| Holliday junction ATP-dependent DNA helicase ruvA [Sphingobacterium
           sp. 21]
          Length = 194

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +      YV++DV GV Y +   + T   +    + C L+V   +++D   L
Sbjct: 1   MYEYLNGKLAYKCPTYVVLDVNGVGYHVNISLYTFGKIKDC-EQCKLYVSFQVKEDAHSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + +R+ F  L SV G+GA     +LS IT TE+  +I+  + K I +I GI  K 
Sbjct: 60  YGFAEEGERRLFNHLLSVSGIGASTGRMILSSITPTEIQTAIVQGDVKQIQRIKGIGPKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL+ K                     +    S    A++ALV LG+ + QA   
Sbjct: 120 AQRIILELQDKLKKEG----------ADTLISVPQHQSVPEEALTALVMLGFNKAQAEKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  + K         ++I+ ALR +
Sbjct: 170 LTEIQKNNAAQFTVEELIKEALRRL 194


>gi|323527310|ref|YP_004229463.1| Holliday junction DNA helicase RuvA [Burkholderia sp. CCGE1001]
 gi|323384312|gb|ADX56403.1| Holliday junction DNA helicase RuvA [Burkholderia sp. CCGE1001]
          Length = 193

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 103/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y +  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGVLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPSTGERVVLLTQMIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  + G+GAR+A+ VLS ++  EL +++ LQ++  + ++PGI  K 
Sbjct: 61  YGFGTAEERSTFRELLKISGIGARMALAVLSGMSVHELSQTVTLQDAARLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+              ++  +       A   S    A + ++AL+ LGY + +A  A
Sbjct: 121 AERL-----------LLELKGKLGADLGVMAGAVSASDHASDILNALLALGYSEKEALAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +V          S+ I+LAL+A+S
Sbjct: 170 IKNV----PAGTGVSEGIKLALKALS 191


>gi|261749358|ref|YP_003257043.1| Holliday junction DNA helicase motor protein [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
 gi|261497450|gb|ACX83900.1| Holliday junction DNA helicase motor protein [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
          Length = 202

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 100/206 (48%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI  ++G +    +  ++ID  GV Y ++    T S L  + G   +++    ++++Q  
Sbjct: 1   MITHLRGKLIEKNQSSLIIDCNGVGYYLHISSYTYSSLLEEEGKEISIYTYLFIKENQHV 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF   ++R+ F  L SV G+G   A+ +LS +T  E+ ESI  ++ +V  Q+ GI  K
Sbjct: 61  LYGFFERIERKIFSHLISVNGIGPSSAITILSSLTPHEIKESISREDIEVFNQVKGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ ELK K     S + +    VN               A+SAL+ LG+   ++  
Sbjct: 121 TAQRIIIELKDKISISPSTIPKKGKNVNFFDKPPIF---IKKEALSALIVLGFSPKESKK 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            +  +L K         +I+ +L+ +
Sbjct: 178 VLEEILDKNPEF-TVENLIKESLKKL 202


>gi|17545220|ref|NP_518622.1| Holliday junction DNA helicase motor protein [Ralstonia
           solanacearum GMI1000]
 gi|20455245|sp|Q8Y235|RUVA_RALSO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|17427511|emb|CAD14029.1| probable holliday junction dna helicase ruva protein [Ralstonia
           solanacearum GMI1000]
          Length = 193

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 106/206 (51%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGEKVALLTQQIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F  L  + G+GAR+A+ VLS ++  EL +++ LQ +  + +IPGI  K 
Sbjct: 61  YGFGTAAERETFRQLIKISGIGARIALAVLSGMSVAELAQAVTLQEAGRLTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK  +    V    +               A++ ++AL+ LGY   +A  A
Sbjct: 121 AERLLLELKGKLGADLGTVPGGPAV-----------SDDAVDVLNALLALGYSDKEAAQA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  V          S+ I+LAL+A+S
Sbjct: 170 IKQV----PAGTGVSEGIKLALKALS 191


>gi|254559651|ref|YP_003066746.1| Holliday junction ATP-dependent DNA helicase ruvA [Methylobacterium
           extorquens DM4]
 gi|254266929|emb|CAX22728.1| Holliday junction ATP-dependent DNA helicase ruvA [Methylobacterium
           extorquens DM4]
          Length = 208

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 86/209 (41%), Positives = 130/209 (62%), Gaps = 5/209 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++   ED+V++DV GV Y+++C  RTL  L K G+   L +ETH+R+D IRL
Sbjct: 1   MIGKLKGIVDSYGEDFVILDVNGVGYVVHCSARTLQRLPKPGEATDLAIETHVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +R+WF LLQ+VQGVG RVA+GVLS +   +L  +I   +   +A+ PG+  ++
Sbjct: 61  YGFRVDAEREWFRLLQTVQGVGTRVALGVLSVLEPAQLATAIATGDKGAVARAPGVGPRL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+R++ ELK KA + + +    ++     +      P    +AISALVNLGY Q QA+ A
Sbjct: 121 AARLVAELKDKAPAFAPIDPALIALTGAVEDRTAPQP--VADAISALVNLGYAQIQASAA 178

Query: 181 VVSVLKKEKNIADDSQ---IIRLALRAIS 206
           + + LK     A   +   +IRL LR ++
Sbjct: 179 IAAALKGLGEEAGAVEAKTLIRLGLRELA 207


>gi|294501382|ref|YP_003565082.1| holliday junction DNA helicase RuvA [Bacillus megaterium QM B1551]
 gi|295706729|ref|YP_003599804.1| holliday junction DNA helicase RuvA [Bacillus megaterium DSM 319]
 gi|294351319|gb|ADE71648.1| holliday junction DNA helicase RuvA [Bacillus megaterium QM B1551]
 gi|294804388|gb|ADF41454.1| holliday junction DNA helicase RuvA [Bacillus megaterium DSM 319]
          Length = 203

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 98/205 (47%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +  +YV+I+  G+ Y ++ P   +  + +     T++   ++R+D I L
Sbjct: 1   MFDYIKGTVTYINPEYVVIENNGIGYQVFTPNPYVFSIDE--QPKTVYTYQYVREDVIAL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S   +  FM L SV G+G +  + +L+     ++V+++  ++ K + + PG+  K 
Sbjct: 59  YGFASREQKDLFMKLISVSGIGPKGGLAILASGNPAQVVQAVEEEDEKFLVKFPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   +       +      Q            AI AL  LGY + +    
Sbjct: 119 ARQMILDLKGKLHDIVPDAVPSLFADLDAQEVKSQSSEALDEAIEALKVLGYAEREIKKI 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +++K+        Q I+ AL+ +
Sbjct: 179 VPALMKE---TMTTDQYIKEALKRL 200


>gi|319953601|ref|YP_004164868.1| holliday junction DNA helicase subunit ruva [Cellulophaga algicola
           DSM 14237]
 gi|319422261|gb|ADV49370.1| Holliday junction DNA helicase subunit RuvA [Cellulophaga algicola
           DSM 14237]
          Length = 193

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 100/205 (48%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +      +V+I+  GV Y +   + T S +    +   LF    +++D   L
Sbjct: 1   MIHHLKGKLVEKNPTHVVIECGGVGYFVNISLHTFSKITDA-ENIQLFTHLQVKEDSHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R+ F LL SV G+GA +A  +LS ++  ++ ++I   N   I  I GI  K 
Sbjct: 60  FGFSEKSEREIFRLLVSVSGIGASIARTMLSSMSPMQIRDAIATANVSAIQSIKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K + +  + +              S  +    A+SAL  LG+ + Q+   
Sbjct: 120 AQRVILDLKDKILKIYDIDE----------VSSISNNTNKDEALSALEVLGFIRKQSEKI 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  VL ++ ++     II+L+L+ +
Sbjct: 170 VDKVLAQDASL-SVEDIIKLSLKNL 193


>gi|295677647|ref|YP_003606171.1| Holliday junction DNA helicase RuvA [Burkholderia sp. CCGE1002]
 gi|295437490|gb|ADG16660.1| Holliday junction DNA helicase RuvA [Burkholderia sp. CCGE1002]
          Length = 193

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 103/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y +  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGVLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPSTGERIVLLTQMIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  + G+GAR+A+ VLS ++  EL +++ +Q++  + ++PGI  K 
Sbjct: 61  YGFGTAQERATFRELLKISGIGARMALAVLSGMSVAELAQTVTMQDAARLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+              ++  +       A   S    A + ++AL+ LGY + +A  A
Sbjct: 121 AERL-----------LLELKGKLGADLGAMAGATSPSDHASDILNALLALGYSEKEALAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +V          S+ I+LAL+A+S
Sbjct: 170 IKNV----PAGTGVSEGIKLALKALS 191


>gi|332663957|ref|YP_004446745.1| Holliday junction ATP-dependent DNA helicase ruvA
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332332771|gb|AEE49872.1| Holliday junction ATP-dependent DNA helicase ruvA
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 196

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 104/206 (50%), Gaps = 11/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++GNI      Y++++  GV Y+++  + T S + +  +   +    ++++D   L
Sbjct: 1   MITYLRGNITQKTPTYIVVETAGVGYLVHISLHTYSQI-EKKEEVKILTHLNIKEDSHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + +R  F  L SV GVG   A  +LS ++  EL  +II +  +V   + GI  K+
Sbjct: 60  YGFAEEAERSLFRHLISVSGVGPTTAQIMLSSLSPDELRAAIIGEQEQVFRAVKGIGPKM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K I  S  +       N          +    A+SALV LG+ +     A
Sbjct: 120 AKRIILDLKDKLIKDSGDLPLTFPSQN---------NTIREEALSALVALGFQKIAVQKA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +LK +  I +  Q+I+LALR +S
Sbjct: 171 LNHLLKDQA-IQNVEQLIKLALRELS 195


>gi|227538550|ref|ZP_03968599.1| crossover junction endodeoxyribonuclease [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|227241469|gb|EEI91484.1| crossover junction endodeoxyribonuclease [Sphingobacterium
           spiritivorum ATCC 33300]
          Length = 194

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M     G +      +V++DV G+ Y I+  + T + L K  + C LF+   +R+D   L
Sbjct: 1   MYEYFNGKLVFKAPTHVVLDVNGIGYYIHISLNTFA-LIKDQENCKLFISFQVREDSQTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +RQ F  L SV G+G      +LS IT  E+  +II     VI +I GI  K 
Sbjct: 60  FGFATEGERQLFEHLISVSGIGPNTGRMILSSITPEEIQSAIINGQVAVIQKIKGIGPKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K               +   + + +  S    A+SAL+ LG+ ++QA   
Sbjct: 120 AQRLILELQDKLKKQGP---------DALISPVATKQSVPEEALSALIMLGFVKNQAEKV 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +++  E ++    Q+I+LAL+ +
Sbjct: 171 LNTIINTEPDL-SVEQLIKLALKRL 194


>gi|295109923|emb|CBL23876.1| Holliday junction DNA helicase subunit RuvA [Ruminococcus obeum
           A2-162]
          Length = 203

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 101/204 (49%), Gaps = 2/204 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +    E+ V+++  G+ Y I+    ++    +      +    H+R+D ++L
Sbjct: 1   MISFIRGLVADTTENSVILEAGGIGYEIFMTGSSIEQASRSDGKVKIHTYFHVREDAMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  D + F LL +V G+G + A+GVL+ +TA EL  +++  + K I++ PGI  K 
Sbjct: 61  YGFLSRDDLEMFRLLLNVNGIGPKAALGVLAGLTADELRFAVLSDDIKTISRAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK K     +  ++              +      A+ ALV LGY   +A  A
Sbjct: 121 AQKLILELKDKLKLEDAFEKKLAHEQEAADISGSVLHDGRQEAVEALVALGYSSTEAMKA 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V  V     +  D   +++ AL+ 
Sbjct: 181 VRKVTDVSPD--DVEGLLKAALKL 202


>gi|270157092|ref|ZP_06185749.1| Holliday junction DNA helicase RuvA [Legionella longbeachae D-4968]
 gi|289164497|ref|YP_003454635.1| holliday junction DNA helicase [Legionella longbeachae NSW150]
 gi|269989117|gb|EEZ95371.1| Holliday junction DNA helicase RuvA [Legionella longbeachae D-4968]
 gi|288857670|emb|CBJ11513.1| holliday junction DNA helicase [Legionella longbeachae NSW150]
          Length = 198

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 61/207 (29%), Positives = 101/207 (48%), Gaps = 12/207 (5%)

Query: 1   MIGKIKGNIEGL-YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG + G+I        ++++V GV Y +   + T   L  +     L + T +R+D + 
Sbjct: 1   MIGWLDGHIVDKYQPGKLVLNVHGVGYDVETSLNTFFKLDTLNGSVGLHIHTIVREDALL 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL   +R+ F  L  V GVG ++AM +LS IT  E +E I  +N+  + ++PGI  K
Sbjct: 61  LYGFLDRQERELFRALIKVNGVGPKLAMSILSSITPNEFIECIQQENAVFLMKLPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ E++      S    + +   ++         S    A+SAL  LGY   +A  
Sbjct: 121 TAERLVVEMRDSLKQFSVPCSESLKSDHRM--------SDQDEAVSALEVLGYKPQEALK 172

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV  V      +    Q+IR AL+ ++
Sbjct: 173 AVKKV---NDGVKSCEQLIRDALQVLA 196


>gi|315224590|ref|ZP_07866416.1| crossover junction ATP-dependent DNA helicase RuvA [Capnocytophaga
           ochracea F0287]
 gi|314945456|gb|EFS97479.1| crossover junction ATP-dependent DNA helicase RuvA [Capnocytophaga
           ochracea F0287]
          Length = 194

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 103/205 (50%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +      YV+ID  GV Y +   + T S L + G+   L+    +++D   L
Sbjct: 1   MITQLQGKLVEKNPTYVVIDCHGVGYFVNISLNTYSALPE-GEAIKLYTYLQIKEDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R+ F+LL SV GVGA  A  +LS +TA ++  +II      I  + GI  K 
Sbjct: 60  YGFLTKAEREVFVLLLSVSGVGASTARTMLSALTAAQVRNAIINGEVATIQAVKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K + L    +  M+ V+               A++AL  LG+ + QA   
Sbjct: 120 AQRVVLDLKDKMLKLQDFEEVPMNAVSTH----------KEEALAALEVLGFMRKQAEKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  ++K         +II+ AL+ +
Sbjct: 170 VDIIIKSSSEELSVEEIIKQALKRL 194


>gi|302384291|ref|YP_003820114.1| Holliday junction DNA helicase RuvA [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194919|gb|ADL02491.1| Holliday junction DNA helicase RuvA [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 205

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 107/206 (51%), Gaps = 4/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ-IR 59
           MIG+++G +  + E + LID  GV Y++ C  RTL  L   GD  TL V +   +D   R
Sbjct: 1   MIGRLRGVVAEIEEGHCLIDCAGVGYVVACGARTLGRLPAPGDEATLHVHSQWSEDAGPR 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL+  +R+ F  L  +QGVG + A+ VL  +   EL  ++   +   I +  G+  K
Sbjct: 61  LYGFLARDERRAFTTLLGIQGVGPKAALSVLDVLPPGELAGAVARDDKAAIGRANGVGPK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           +A RI+TELKGK +     V    S           +PS    A+SAL+ LG  +  A  
Sbjct: 121 LALRIVTELKGKPL---GDVSFTPSVAGVHAEVAPPVPSVTGEAVSALLGLGVAEVNARR 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
           AV   L +  + A+ S +IR AL+ +
Sbjct: 178 AVDQALIRLGDAAELSAVIRAALQEL 203


>gi|307730947|ref|YP_003908171.1| Holliday junction DNA helicase RuvA [Burkholderia sp. CCGE1003]
 gi|307585482|gb|ADN58880.1| Holliday junction DNA helicase RuvA [Burkholderia sp. CCGE1003]
          Length = 193

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 102/206 (49%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y +  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGVLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPSTGERVVLLTQMIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  + G+GAR+A+ VLS ++  EL +++ LQ++  + ++PGI  K 
Sbjct: 61  YGFGTAEERSTFRELLKISGIGARMALAVLSGMSVHELSQTVTLQDAARLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+              ++  +       A   S    A + ++AL+ LGY + +A  A
Sbjct: 121 AERL-----------LLELKGKLGADLGAMAGAVSASDHASDILNALLALGYSEKEALAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +V          S  I+LAL+A+S
Sbjct: 170 IKNV----PAGTGVSDGIKLALKALS 191


>gi|254787341|ref|YP_003074770.1| Holliday junction DNA helicase RuvA [Teredinibacter turnerae T7901]
 gi|259495657|sp|C5BQT5|RUVA_TERTT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|237687527|gb|ACR14791.1| Holliday junction DNA helicase RuvA [Teredinibacter turnerae T7901]
          Length = 206

 Score =  162 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 103/206 (50%), Gaps = 4/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ GN+       +++D+ GV Y +  P+ T   L ++     L     + +   +L
Sbjct: 1   MIGRLTGNLVVKQAPNLMVDINGVGYDLLAPMSTFYQLPELDAKVVLHTHFAVSETSQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+   DR++F +L  V GVG ++A+G++S +   ++V  I+  N   + ++PG+  K 
Sbjct: 61  FGFIDQQDREFFRMLIKVNGVGPKMAVGIMS-METNDIVRCILEDNLNALVKVPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCV-NKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E++ K  S       D +       +   S  +    A SALV LGY   +A+ 
Sbjct: 120 AERLIIEMRDKLKSWQVTPSVDATGSLVALDSAAPSQNAIVAEAESALVALGYKPVEASK 179

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
           AV  V   E  I     +IRLALR +
Sbjct: 180 AVARVTSDE--ITRSEDLIRLALRNM 203


>gi|91776705|ref|YP_546461.1| Holliday junction DNA helicase RuvA [Methylobacillus flagellatus
           KT]
 gi|123253965|sp|Q1GYR7|RUVA_METFK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|91710692|gb|ABE50620.1| Holliday junction DNA helicase RuvA [Methylobacillus flagellatus
           KT]
          Length = 194

 Score =  162 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 101/206 (49%), Gaps = 14/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       V+ID  GV Y    P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIARLSGILVEKTPPQVVIDCHGVGYECEVPMSTFYNLPATGEKVVLLTQFIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF SD +R  F  L  V GVGA+ A+ +LS ++  +L +++ LQ + ++ ++PGI  K 
Sbjct: 61  YGFGSDQERATFRQLLKVNGVGAKSALAILSGLSVDDLAQAVALQETGLLIKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K                   A      S + + ++AL+ LGY + +A  A
Sbjct: 121 AERLLLELKDKFAIDGGTA----------LAGSNPAKSASSDVLNALLALGYNEREALAA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  +          ++ I+L+L+++S
Sbjct: 171 VKQL----PADIAVAEGIKLSLKSLS 192


>gi|13473339|ref|NP_104906.1| Holliday junction DNA helicase RuvA [Mesorhizobium loti MAFF303099]
 gi|20455256|sp|Q98F75|RUVA_RHILO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|14024088|dbj|BAB50692.1| Holliday branch migration protein; RuvA [Mesorhizobium loti
           MAFF303099]
          Length = 206

 Score =  162 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 83/207 (40%), Positives = 131/207 (63%), Gaps = 3/207 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++ + ED+ L+D+ GV Y+ YC  RTL+ L   G+   LF+ET++R+D +RL
Sbjct: 1   MIGKLKGTLDEIDEDHCLVDIHGVGYVAYCSARTLAALPSPGEAVVLFIETYVREDMLRL 60

Query: 61  FGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +GF S L+R+WF LL  +V GVGA+VA+ +LS +   +L  +I L++  ++++ PG+  K
Sbjct: 61  YGFQSALEREWFRLLLNNVPGVGAKVALAILSTLAPADLANAIALRDIAMVSRAPGVGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           +A RI+TELK KA + +      +    +    +   P    +A+SALVNLGY +D A  
Sbjct: 121 VAERIVTELKNKAPAYAGAASGTIGLKQELGEGVAPAP--ITDAVSALVNLGYSRDTAAN 178

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV + LK     AD S++IR  L+ ++
Sbjct: 179 AVAAALKTAGEDADASKLIRFGLKELA 205


>gi|121601945|ref|YP_988488.1| Holliday junction DNA helicase motor protein [Bartonella
           bacilliformis KC583]
 gi|166230519|sp|A1UR85|RUVA_BARBK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|120614122|gb|ABM44723.1| Holliday junction DNA helicase RuvA [Bartonella bacilliformis
           KC583]
          Length = 217

 Score =  162 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 76/213 (35%), Positives = 134/213 (62%), Gaps = 7/213 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++ ++ED++++DVQGV Y+++   R LS L + G   +LF+ETH+R+D IRL
Sbjct: 1   MIGKLTGILDSVFEDHIILDVQGVGYVVFLSNRLLSSLPERGQAVSLFIETHVREDAIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + +++ WF LLQ+V+GVGA+VA+ +LS +   +L ++I L +  +I++ PG+   +
Sbjct: 61  FGFETKVEQDWFCLLQNVRGVGAKVALAILSTLPPPQLAQAITLSDIAMISRSPGVGKMV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDM------SCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           + RI+ ELK KA+  ++  Q         S  + +     +    +++A++AL  LG+ +
Sbjct: 121 SERIINELKNKALPSNAPHQSMPHFVSYSSETSSQAGTQHTGHQHSMDALAALTKLGFER 180

Query: 175 DQATTAVVSVLKK-EKNIADDSQIIRLALRAIS 206
           DQAT A+   +K  E      + +IR +L+ +S
Sbjct: 181 DQATHALQEAIKAFEGETPSSALLIRHSLKLLS 213


>gi|153814820|ref|ZP_01967488.1| hypothetical protein RUMTOR_01035 [Ruminococcus torques ATCC 27756]
 gi|331089652|ref|ZP_08338551.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847851|gb|EDK24769.1| hypothetical protein RUMTOR_01035 [Ruminococcus torques ATCC 27756]
 gi|330405020|gb|EGG84558.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 204

 Score =  162 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 101/206 (49%), Gaps = 4/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +  + E   +IDV G+ Y ++ P + L+ L  +G+   L+   ++R+D ++L
Sbjct: 1   MISYVKGELAAIEEQKAIIDVGGIGYGVFMPHQALAMLPSVGNEVKLYTYLNVREDAMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  D + F L+  V G+G +  + +LS ++  EL  +I+  ++K+I+  PGI  K 
Sbjct: 61  FGFLTKDDLEIFRLVIGVSGIGPKGGLNILSCMSPDELRFAIMSGDAKMISSAPGIGKKT 120

Query: 121 ASRIMTELKGKAI-SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A +++ EL+ K                 +      S       A+ ALV LGYG  ++  
Sbjct: 121 AEKLIVELRDKVDIEKMLDHAAHPEETIQTDMAKTSANEMQSEAVQALVALGYGSAESLR 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
           AV               I++ AL+ +
Sbjct: 181 AVKK---TSVQCQTVEDILKEALQYL 203


>gi|332527517|ref|ZP_08403569.1| Holliday junction DNA helicase RuvA [Rubrivivax benzoatilyticus
           JA2]
 gi|332111924|gb|EGJ11902.1| Holliday junction DNA helicase RuvA [Rubrivivax benzoatilyticus
           JA2]
          Length = 192

 Score =  162 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 104/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L+DV GV Y +  P+ T   L  +G+   L  E  +R+D  +L
Sbjct: 1   MIGRLSGTLAEKTPPQLLVDVGGVGYEVDVPMSTFYHLPALGERVVLLTEFVVREDAQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  +R  F LL  + GVG R+A+ +LS ++  EL +++  Q+   + ++PGI  K 
Sbjct: 61  FGFLTASERATFRLLVKISGVGPRMALALLSGLSVAELSQAVAAQDGARLVKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK      +        +                + AL+ LGY + +A  A
Sbjct: 121 AERVLLELKGKLAPDLGLPSAAGGAGDAHAD-----------IVQALMALGYNEREAQAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
             ++ K        S+ I++AL+A++
Sbjct: 170 AKALPKDVG----VSEGIKVALKALN 191


>gi|167564063|ref|ZP_02356979.1| Holliday junction DNA helicase motor protein [Burkholderia
           oklahomensis EO147]
 gi|167571207|ref|ZP_02364081.1| Holliday junction DNA helicase motor protein [Burkholderia
           oklahomensis C6786]
          Length = 193

 Score =  162 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y +  P+ T   L    +   L  +  +R+D   L
Sbjct: 1   MIGRIAGTLLEKNPPHILVDCNGVGYEVDVPMSTFYNLPHTSEKVVLLTQLIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  + GVGAR+A+ VLS ++  EL +++ LQ++  + ++PGI  K 
Sbjct: 61  YGFLTPQERSTFRELLKITGVGARMALAVLSGMSVAELSQAVTLQDAARLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+              ++  +       A   S    A + ++ALV LGY + +A  A
Sbjct: 121 AERL-----------LLELKGKLGADLGPLAGAASPSDHATDILNALVALGYSEKEALAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +V          S+ I+L+L+A+S
Sbjct: 170 IKNV----PAGTGVSEGIKLSLKALS 191


>gi|221134420|ref|ZP_03560725.1| Holliday junction DNA helicase RuvA [Glaciecola sp. HTCC2999]
          Length = 207

 Score =  162 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 56/209 (26%), Positives = 99/209 (47%), Gaps = 7/209 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG I G +       ++I   G+ Y +   + ++  L   G   T+F    +R+D   L
Sbjct: 1   MIGLITGTLLAKQPPEIMIQAGGIGYEVSMSMHSIYALPTEGQPVTVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+   +R  F  L    GVG ++A+ +LS ++  +L+ ++  ++   + +IPG+  K 
Sbjct: 61  FGFIEKEERTVFRELIKANGVGPKLAITILSGMSVQDLIRAVGYEDVSSLVKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSC----VNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ ELK +   L+     +          + + I  +      A+SALV LGY    
Sbjct: 121 AERLVVELKDRLAKLTLTQPNEALTLPVVSATDGSTIIPINDTREEALSALVALGYKAPV 180

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A+  + SV     +     Q+IR AL+A+
Sbjct: 181 ASKIIQSVY---DDTMSSEQLIRAALKAM 206


>gi|319409331|emb|CBI82975.1| holliday junction DNA helicase RuvA [Bartonella schoenbuchensis R1]
          Length = 211

 Score =  162 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 78/207 (37%), Positives = 127/207 (61%), Gaps = 3/207 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++ + +D++++DVQGV Y ++   R LS L  +G+   LF+ETH+R + IRL
Sbjct: 1   MIGKLKGILDSICDDHIILDVQGVGYSVFVSNRLLSSLPTLGEHLNLFIETHVRAEAIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R WF LLQ+V GVGA+VA+ +L  ++  EL ++I L +  +I + PGI  K+
Sbjct: 61  FGFTTKAERDWFCLLQNVPGVGAKVALAILGTLSPGELAQAIALNDVAMIKRAPGIGQKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           + RI++E K KA+  +   +      +  QA   + P    +A+SAL  LG+ +DQA  A
Sbjct: 121 SERIISEFKNKALPFNEESKNTAHLASNLQAQETNQP--VNDALSALTKLGFDRDQAAQA 178

Query: 181 VVSVLKK-EKNIADDSQIIRLALRAIS 206
           +   L   E+     + +IR +L+ +S
Sbjct: 179 LSCALSSLEEETVSSALLIRHSLKLLS 205


>gi|319786205|ref|YP_004145680.1| Holliday junction DNA helicase RuvA [Pseudoxanthomonas suwonensis
           11-1]
 gi|317464717|gb|ADV26449.1| Holliday junction DNA helicase RuvA [Pseudoxanthomonas suwonensis
           11-1]
          Length = 196

 Score =  162 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 55/204 (26%), Positives = 97/204 (47%), Gaps = 11/204 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV GV Y +  P+ T   L ++G   +LF     ++D + L
Sbjct: 1   MIGRLRGTLVLKQPPWLVVDVNGVGYELEAPMSTFYDLPELGREVSLFTHYAQKEDSVSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + +R+ F  +Q V G+GA++A+ VLS ++  E    +   +   + +IPGI  K 
Sbjct: 61  YGFLRESERRLFRDVQKVSGIGAKIALAVLSGVSVDEFARLVQAGDVTALTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +          D++          +      +A +AL  LGY    A   
Sbjct: 121 AERMVVELRDR--------AADLAGGGAVAGMTAAPGDPMADAATALQQLGYKPADAQRM 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
                      A    IIR AL++
Sbjct: 173 ARDAAAPGDEAA---AIIRKALQS 193


>gi|291524757|emb|CBK90344.1| Holliday junction DNA helicase subunit RuvA [Eubacterium rectale
           DSM 17629]
 gi|291528922|emb|CBK94508.1| Holliday junction DNA helicase subunit RuvA [Eubacterium rectale
           M104/1]
          Length = 205

 Score =  162 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 104/205 (50%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +     D ++++  GV Y+IY P +    L   G+   ++    +R+D + L
Sbjct: 4   MYAYIKGELAEKNIDSIVVEAAGVGYLIYIPTQYFDMLPDEGEDVKIYTYLCVREDAMIL 63

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  D + F LL +V G+G +  + +LS + A +L  +I+  +SK I++ PGI  K 
Sbjct: 64  YGFLSKDDLEIFKLLITVSGIGPKGGLAILSTLPADDLRFAILSGDSKAISKAPGIGAKT 123

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K     +  ++  +  +   A +    +   +A+ AL  LGY   ++  A
Sbjct: 124 AQRVILDLKDKLSLEDAFEKKLENQTS--GAAVSMNSTVKNDAVMALNALGYSSTESLKA 181

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V        D   +++LAL+ +
Sbjct: 182 VSKV--DITEDMDVEDVLKLALKNM 204


>gi|302879788|ref|YP_003848352.1| Holliday junction DNA helicase RuvA [Gallionella capsiferriformans
           ES-2]
 gi|302582577|gb|ADL56588.1| Holliday junction DNA helicase RuvA [Gallionella capsiferriformans
           ES-2]
          Length = 193

 Score =  162 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 102/206 (49%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L+DVQGV Y +  P+ T   L  + +   L  +  +R+D   L
Sbjct: 1   MIGRLSGILLEKTPPQILLDVQGVGYELEVPMSTFYNLPPLHEKVVLHTQLIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L  + GVG ++A+ VLS ++  +L +++  + +  + +IPG+  K 
Sbjct: 61  YGFGSTDERIAFRQLLKISGVGPKLALSVLSGLSLNDLADAVANKEAGRLTKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK   +   +           AH   + S + + ++AL  LGY   +A  A
Sbjct: 121 AERLLLELEGKFTVMGVAM-----------AHGVPVTSASGDIVNALQALGYNDKEAALA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
                K+       S  IR AL+ +S
Sbjct: 170 ----AKQLPKDVSVSDGIRQALKFLS 191


>gi|238924017|ref|YP_002937533.1| Holliday junction resolvasome, DNA-binding subunit [Eubacterium
           rectale ATCC 33656]
 gi|238875692|gb|ACR75399.1| Holliday junction resolvasome, DNA-binding subunit [Eubacterium
           rectale ATCC 33656]
          Length = 205

 Score =  162 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 104/205 (50%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +     D ++++  GV Y+IY P +    L   G+   ++    +R+D + L
Sbjct: 4   MYAYIKGELAEKNIDSIVVEAAGVGYLIYIPTQYFDMLPDEGEDVKIYTYLCVREDAMIL 63

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  D + F LL +V G+G +  + +LS + A +L  +I+  +SK I++ PGI  K 
Sbjct: 64  YGFLSKDDLEIFKLLITVSGIGPKGGLAILSTLPADDLRFAILSGDSKAISKAPGIGAKT 123

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K     +  ++  +  +   A +    +   +A+ AL  LGY   ++  A
Sbjct: 124 AQRVILDLKDKLSLEDAFEKKLENQAS--GAAVSMNSTVKNDAVMALNALGYSSTESLKA 181

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V        D   +++LAL+ +
Sbjct: 182 VSKV--DITEDMDVEDVLKLALKNM 204


>gi|50085685|ref|YP_047195.1| Holliday junction DNA helicase RuvA [Acinetobacter sp. ADP1]
 gi|49531661|emb|CAG69373.1| holliday junction helicase subunit A [Acinetobacter sp. ADP1]
          Length = 204

 Score =  162 bits (409), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 64/205 (31%), Positives = 103/205 (50%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  L    VL++V GV Y I  P+ T   L K G   TL+    +R+D  +L
Sbjct: 4   MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQHVTLWTHLVVREDAQQL 62

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   ++  F  L  V GVG ++A+G+LS ++    + +I   +   + ++PG+  K 
Sbjct: 63  YGFIDAQEKLIFRTLLKVNGVGPKMALGILSTLSIELFIHTIEHDDINTLIKVPGVGRKT 122

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+M EL+ +  +LS  VQ              S  S    A +AL +LGY   +A  A
Sbjct: 123 AERLMIELRDRFKALS--VQATTGSTVTSAQIQFSSNSPIAEAEAALQSLGYKPIEAQKA 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +V       AD   +IR AL+++
Sbjct: 181 IAAVKADYTEAAD---LIRAALKSM 202


>gi|298206830|ref|YP_003715009.1| Holliday junction DNA helicase motor protein [Croceibacter
           atlanticus HTCC2559]
 gi|83849464|gb|EAP87332.1| Holliday junction DNA helicase motor protein [Croceibacter
           atlanticus HTCC2559]
          Length = 193

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 99/205 (48%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       +++D  GV Y +   + T   L K  +   +F    +R+D   L
Sbjct: 1   MITQLAGQLIEKNPTNIIVDCGGVGYFVNISLHTFG-LIKNEECVKIFTHLQVREDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R+ F LL  V G+GA  A  +LS +T  ++ E+I   +   I  + GI +K 
Sbjct: 60  FGFAEKAEREVFRLLIGVSGIGASTARTMLSSLTPQQVTEAISQGDVATIQSVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K +++  + +   S  N +             A+SAL  LGY + Q+   
Sbjct: 120 AQRVIIDLKDKILNVVGLDEVLPSQGNTQ----------KEEALSALETLGYTRKQSDKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +LK +   A    II+LAL+ +
Sbjct: 170 VAGILKTDPE-ASVETIIKLALKKL 193


>gi|154504992|ref|ZP_02041730.1| hypothetical protein RUMGNA_02502 [Ruminococcus gnavus ATCC 29149]
 gi|153794875|gb|EDN77295.1| hypothetical protein RUMGNA_02502 [Ruminococcus gnavus ATCC 29149]
          Length = 375

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 105/205 (51%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G + GL  D  ++DVQGV Y IY P ++LS LG IG    +    ++R+D ++L
Sbjct: 176 MISYIRGELAGLERDKAIVDVQGVGYGIYMPEQSLSLLGPIGCEVKIHTYLNVREDAMQL 235

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  D + F L+  V G+G +  + +LS ++A EL  +++  ++K I   PGI  K 
Sbjct: 236 FGFLTRDDLEVFRLVIGVSGIGPKGGLNILSCLSADELKFAVLSGDAKAICAAPGIGKKT 295

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK K       + +  S    E             A+ ALV LGYG  ++  A
Sbjct: 296 AEKLIIELKDKLD--LKEMLEPRSAAAAEIPSDGRNGDIQTEAVQALVALGYGNAESLKA 353

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V            +++ AL+ +
Sbjct: 354 VRQV----TEYTSVEDVLKEALKKM 374


>gi|323186363|gb|EFZ71713.1| holliday junction DNA helicase RuvA [Escherichia coli 1357]
          Length = 187

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 51/187 (27%), Positives = 90/187 (48%), Gaps = 3/187 (1%)

Query: 18  LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQS 77
           LI+V GV Y ++ P+     L + G    +F    +R+D   L+GF +  +R  F  L  
Sbjct: 2   LIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIK 61

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137
             GVG ++A+ +LS ++A + V ++  +    + ++PGI  K A R++ E+K +   L  
Sbjct: 62  TNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGLHG 121

Query: 138 VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQI 197
            +    + +        +       A++ALV LGY   +A+  V  + +     A    +
Sbjct: 122 DLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRMVSKIAR---PDASSETL 178

Query: 198 IRLALRA 204
           IR ALRA
Sbjct: 179 IREALRA 185


>gi|270262223|ref|ZP_06190495.1| holliday junction ATP-dependent DNA helicase RuvA [Serratia
           odorifera 4Rx13]
 gi|270044099|gb|EFA17191.1| holliday junction ATP-dependent DNA helicase RuvA [Serratia
           odorifera 4Rx13]
          Length = 204

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VL++  GV Y ++ P+     L  +G    +F +  +R+D   L
Sbjct: 1   MIGRLRGYILEKQPPLVLLEANGVGYEVHMPMTCFYELPDLGQEAIVFTQFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PG+  K 
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAVEREEITTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN-KEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +   L+  +  + S +     A   +       A SALV LGY   +A+ 
Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNSSEITLPASATQAAELDAEAEAASALVALGYKPQEASR 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  + K     AD   +IR ALRA
Sbjct: 181 MVSKIAK---PGADCETLIRDALRA 202


>gi|90134315|sp|Q6F992|RUVA_ACIAD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
          Length = 201

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 64/205 (31%), Positives = 103/205 (50%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  L    VL++V GV Y I  P+ T   L K G   TL+    +R+D  +L
Sbjct: 1   MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQHVTLWTHLVVREDAQQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   ++  F  L  V GVG ++A+G+LS ++    + +I   +   + ++PG+  K 
Sbjct: 60  YGFIDAQEKLIFRTLLKVNGVGPKMALGILSTLSIELFIHTIEHDDINTLIKVPGVGRKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+M EL+ +  +LS  VQ              S  S    A +AL +LGY   +A  A
Sbjct: 120 AERLMIELRDRFKALS--VQATTGSTVTSAQIQFSSNSPIAEAEAALQSLGYKPIEAQKA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +V       AD   +IR AL+++
Sbjct: 178 IAAVKADYTEAAD---LIRAALKSM 199


>gi|331091226|ref|ZP_08340067.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330404673|gb|EGG84212.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 201

 Score =  161 bits (408), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 107/205 (52%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  + E+  +IDV GV Y I+ P +++  L  + +   L    H+++D ++L
Sbjct: 1   MISYIRGELVAVEEEKAVIDVGGVGYGIFMPAQSMGKLPPLHEEVRLHTYLHVKEDAMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  D + F L+  V G+G + A+ +LS ++A +L  +++  + K I+   GI  K 
Sbjct: 61  YGFLTRDDLKVFKLVIGVSGIGPKGALNILSNLSADDLRFAVLSNDVKAISAAQGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK K   LS     +     +E A           A+ ALV LGYG  ++  A
Sbjct: 121 AEKLIIELKDK---LSMDDVLEHMVQEEEVAVTGQNSGVQAEAVQALVALGYGNTESLRA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V  +    +D   +++ ALR +
Sbjct: 178 VRRV--EVNADSDVETVLKQALRFM 200


>gi|240144037|ref|ZP_04742638.1| holliday junction DNA helicase RuvA [Roseburia intestinalis L1-82]
 gi|257203963|gb|EEV02248.1| holliday junction DNA helicase RuvA [Roseburia intestinalis L1-82]
 gi|291536276|emb|CBL09388.1| Holliday junction DNA helicase subunit RuvA [Roseburia intestinalis
           M50/1]
          Length = 203

 Score =  161 bits (408), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 106/206 (51%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  + E+ ++++  G+ Y IY   +T   L  +G+   ++   H+R+D + L
Sbjct: 1   MYSYIKGILRDMDEESIVVETGGIGYHIYTTGQTFRYLPSVGEEVKVYTYLHVREDAMLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  + + + LL  V G+G + A+ +LS +T  +L  +++  ++K IA+ PG+  K 
Sbjct: 61  FGFLTKDELKIYKLLLGVSGIGPKGALAILSVMTTDDLRFAVLGDDAKAIAKAPGVGTKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K   +S     +       +            A+ ALV LGY   +A  A
Sbjct: 121 AQRLILELKDK---MSLEDAFEQKFEKTGEPAENHAQGTKNEAVQALVALGYSSSEALRA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +  +     D  +I+++AL+ ++
Sbjct: 178 LNGI--EITEETDVEEILKMALKNMA 201


>gi|187927480|ref|YP_001897967.1| Holliday junction DNA helicase RuvA [Ralstonia pickettii 12J]
 gi|309779818|ref|ZP_07674573.1| holliday junction DNA helicase RuvA [Ralstonia sp. 5_7_47FAA]
 gi|229560120|sp|B2UFL2|RUVA_RALPJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|187724370|gb|ACD25535.1| Holliday junction DNA helicase RuvA [Ralstonia pickettii 12J]
 gi|308921395|gb|EFP67037.1| holliday junction DNA helicase RuvA [Ralstonia sp. 5_7_47FAA]
          Length = 193

 Score =  161 bits (408), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 106/206 (51%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGEKVVLLTQQIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F  L  + G+GAR+A+ VLS ++  EL +++ LQ +  + +IPGI  K 
Sbjct: 61  YGFGTAAERETFRQLIKISGIGARIALAVLSGMSVAELAQAVTLQEAGRLTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK  +    V    +               A++ ++AL+ LGY   +A  A
Sbjct: 121 AERLLLELKGKLGADLGTVPGGPAV-----------SDDAVDVLNALLALGYSDKEAALA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  V          S+ I+LAL+A+S
Sbjct: 170 IKQV----PAGTGVSEGIKLALKALS 191


>gi|294669790|ref|ZP_06734856.1| hypothetical protein NEIELOOT_01690 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308356|gb|EFE49599.1| hypothetical protein NEIELOOT_01690 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 194

 Score =  161 bits (408), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 97/205 (47%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +       ++IDV GV Y     ++T   L  + +   L+ +  +R+D   L
Sbjct: 1   MISRLTGKLIEKQPPQIVIDVNGVAYEADVSMQTFYNLPPLNETVQLYTQLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L  V G+GA+ A+G+LS +TA EL +++  ++ K ++  PGI  K 
Sbjct: 61  FGFGTAAERATFRQLVKVSGIGAKTALGILSAMTADELAQAVAQEDVKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK              V+              + I  L+ LGY   +A  A
Sbjct: 121 AERMILELRGKLSG---------GTVSDGLFAQPQAADETDDIIGTLLALGYSDREARAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +        +  + +RLAL+ +
Sbjct: 172 VKGIA----PGTEVGEGVRLALKNL 192


>gi|281601276|gb|ADA74260.1| Holliday junction ATP-dependent DNA helicase ruvA [Shigella
           flexneri 2002017]
 gi|332766837|gb|EGJ97038.1| holliday junction DNA helicase RuvA [Shigella flexneri 2930-71]
          Length = 187

 Score =  161 bits (408), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 89/187 (47%), Gaps = 3/187 (1%)

Query: 18  LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQS 77
           LI+V GV Y ++ P+     L + G    +F    +R+D   L+GF +  +R  F  L  
Sbjct: 2   LIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIK 61

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137
             GVG ++A+ +LS ++A + V ++  +    + ++PGI  K A R++ E+K +   L  
Sbjct: 62  TNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGLHG 121

Query: 138 VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQI 197
            +    + +        +       A++ALV LGY   +A+  V  + +          +
Sbjct: 122 DLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRMVSKIAR---PDTSSETL 178

Query: 198 IRLALRA 204
           IR ALRA
Sbjct: 179 IREALRA 185


>gi|89889458|ref|ZP_01200969.1| Holliday junction DNA helicase ruvA [Flavobacteria bacterium BBFL7]
 gi|89517731|gb|EAS20387.1| Holliday junction DNA  helicase ruvA [Flavobacteria bacterium
           BBFL7]
          Length = 193

 Score =  161 bits (408), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +       V+ID  GV Y +   + T S + + G+   LF    +R+D  RL
Sbjct: 1   MIAQLQGKLVEKNLTDVVIDCGGVGYFVEISLHTYSLIPE-GELIKLFTFMQVREDSQRL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+   +R+ F LL SV G+GA  A  +LS +   ++ ++I   + + I  + GI  K 
Sbjct: 60  FGFMEKSEREVFKLLLSVSGIGASTARTMLSSLEPRQIAQAIASGDVRTIQSVKGIGAKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K + +             E   + S  +    A+SAL  LGY + QA   
Sbjct: 120 AQRVILDLKDKILQVLE----------GEDISLHSSNTGRDEALSALETLGYLRKQAQKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +L  E + A    +I+ AL+ +
Sbjct: 170 VDKILASEPD-ASVETLIKGALKQL 193


>gi|319781019|ref|YP_004140495.1| Holliday junction DNA helicase RuvA [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166907|gb|ADV10445.1| Holliday junction DNA helicase RuvA [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 206

 Score =  161 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 83/207 (40%), Positives = 131/207 (63%), Gaps = 3/207 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++ + ED+ L+D+ GV Y+ YC  RTL+ L   G+   LF+ET++R+D +RL
Sbjct: 1   MIGKLKGTLDEVDEDHCLVDIHGVGYVAYCSARTLAALPSPGEAVVLFIETYVREDMLRL 60

Query: 61  FGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +GF S L+R+WF LL  +V GVGA+VA+ +LS +   +L  +I L++  ++++ PG+  K
Sbjct: 61  YGFQSVLEREWFRLLMNNVPGVGAKVALAILSTLAPADLANAIALRDIAMVSRAPGVGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           +A RI+TELK KA + +      +    +    + S P    +A+SALVNLGY +D A  
Sbjct: 121 VAERIVTELKNKAPAYAGTASGTIGLKQELGDGVASAP--ITDAVSALVNLGYSRDTAAN 178

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV + LK     AD  ++IR  L+ ++
Sbjct: 179 AVAAALKTAGEDADAPKLIRFGLKELA 205


>gi|238786430|ref|ZP_04630350.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia
           bercovieri ATCC 43970]
 gi|238712664|gb|EEQ04756.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia
           bercovieri ATCC 43970]
          Length = 196

 Score =  161 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 54/196 (27%), Positives = 94/196 (47%), Gaps = 5/196 (2%)

Query: 11  GLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQ 70
                 VL++  GV Y +  P+     L ++G    +F +  +R+D   L+GF    +R 
Sbjct: 2   EKQPPLVLLEANGVGYEVQLPMTCFYELPELGQEAIIFTQFIVREDAQLLYGFNDKQERA 61

Query: 71  WFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
            F  L  V GVG ++A+ +LS ++A + V ++  ++   + ++PG+  K A R++ E+K 
Sbjct: 62  LFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKTAERLVVEMKD 121

Query: 131 KAISLSSVVQQDMSCVNKEQAHIC--SMPSFAINAISALVNLGYGQDQATTAVVSVLKKE 188
           +   L+  +  +   +    +     S       A SALV LGY   +A+  V  + K  
Sbjct: 122 RFKGLNGDLFNNTGDITLPASSSSQLSDADIEAEAASALVALGYKPQEASRLVSKIAK-- 179

Query: 189 KNIADDSQIIRLALRA 204
              AD   +IR ALRA
Sbjct: 180 -PGADCETLIRDALRA 194


>gi|256819155|ref|YP_003140434.1| Holliday junction DNA helicase RuvA [Capnocytophaga ochracea DSM
           7271]
 gi|256580738|gb|ACU91873.1| Holliday junction DNA helicase RuvA [Capnocytophaga ochracea DSM
           7271]
          Length = 194

 Score =  161 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 104/205 (50%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +      +V+ID  GV Y +   + T S L + G+   L+    +++D   L
Sbjct: 1   MITQLQGKLVEKNSTHVVIDCHGVGYFVNISLNTYSALPE-GEAIKLYTYLQIKEDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R+ F+LL SV GVGA  A  +LS +TA ++  +II  +   I  + GI  K 
Sbjct: 60  YGFLTKAEREVFVLLLSVSGVGASTARTMLSALTAAQVRNAIINGDVATIQAVKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K + L    +  M+ V+               A++AL  LG+ + QA   
Sbjct: 120 AQRVVLDLKDKMLKLQDFEEVPMNAVSTH----------KEEALAALEVLGFMRKQAEKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  ++K         +II+ AL+ +
Sbjct: 170 VDIIIKSSSEELSVEEIIKQALKRL 194


>gi|299135919|ref|ZP_07029103.1| Holliday junction DNA helicase RuvA [Acidobacterium sp. MP5ACTX8]
 gi|298602043|gb|EFI58197.1| Holliday junction DNA helicase RuvA [Acidobacterium sp. MP5ACTX8]
          Length = 198

 Score =  161 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 66/202 (32%), Positives = 103/202 (50%), Gaps = 8/202 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G I     + V++D  GV Y +   I T + LG  G    L V TH+R+D + L
Sbjct: 1   MIAYLRGRILSKASNAVIVDCNGVGYELAISITTFTELGAEGAEAKLHVHTHVREDALAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +++ F  L ++ G+G ++A+ VLS I+A  LV +I   +   + +IPGI  K 
Sbjct: 61  FGFAELTEKRLFEKLLTISGIGPKLAITVLSGISAERLVGAIRAGDHATLTKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K   +     +  +          S+ + A + +SALVNLGY +  A  A
Sbjct: 121 AERVVLELKDKLDDMVGSTPETGARF--------SLGTVADDVLSALVNLGYARPVAQKA 172

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           V +  K      D  Q+ R A+
Sbjct: 173 VETAAKDAAVAGDFEQLFRAAM 194


>gi|329296286|ref|ZP_08253622.1| Holliday junction DNA helicase RuvA [Plautia stali symbiont]
          Length = 204

 Score =  161 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 99/205 (48%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+   V Y ++ P+     L  I     +F +  +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLVLIEAHCVGYEVHLPMTCFYELPDINQEAIIFTQFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PG+  K 
Sbjct: 61  FGFNSKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVEREEIASLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVV-QQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ E+K +   +   +   D +      +           A++ALV LGY   +A+ 
Sbjct: 121 AERLVVEMKDRFKGMHGDLFGGDSAFTLTTPSAQQDNNDAEAEAVAALVALGYKPQEASR 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  V    K  AD   +IR ALRA
Sbjct: 181 MVSKV---GKPDADCETLIREALRA 202


>gi|15966503|ref|NP_386856.1| Holliday junction DNA helicase motor protein [Sinorhizobium
           meliloti 1021]
 gi|307300460|ref|ZP_07580240.1| Holliday junction DNA helicase RuvA [Sinorhizobium meliloti BL225C]
 gi|307318325|ref|ZP_07597760.1| Holliday junction DNA helicase RuvA [Sinorhizobium meliloti AK83]
 gi|20455253|sp|Q92M91|RUVA_RHIME RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|15075774|emb|CAC47329.1| Probable holliday junction DNA helicase [Sinorhizobium meliloti
           1021]
 gi|306896007|gb|EFN26758.1| Holliday junction DNA helicase RuvA [Sinorhizobium meliloti AK83]
 gi|306904626|gb|EFN35210.1| Holliday junction DNA helicase RuvA [Sinorhizobium meliloti BL225C]
          Length = 205

 Score =  161 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 95/206 (46%), Positives = 138/206 (66%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + ED+V++DV GV Y+ +C  RTL  LG  G+   LF+ET++R+DQ++L
Sbjct: 1   MIGKLKGTIDEIGEDHVVLDVHGVGYVAHCSARTLGKLGSAGEAAVLFIETYVREDQLKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLS L+R+WF LLQSVQGVG++VA+ VLS +T  EL  +I LQ+   I++ PG+  K+
Sbjct: 61  FGFLSALEREWFRLLQSVQGVGSKVALAVLSTLTPGELANAIALQDKTSISRAPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA + S  +   +    K++       +   +A+SAL NLGY +DQA  A
Sbjct: 121 AVRIVTELKNKAPAFSGEMAPSIGL--KQELGEGVAAAPVADAVSALTNLGYSRDQAANA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + LK      D +++IRL L+ +S
Sbjct: 179 VAAALKNGGEGGDSAKLIRLGLKELS 204


>gi|325528762|gb|EGD05824.1| Holliday junction DNA helicase RuvA [Burkholderia sp. TJI49]
          Length = 193

 Score =  161 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 108/206 (52%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L + G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGILLEKNPPHLLVDCNGVGYEIDVPMSTFYNLPQTGERVVLLTQQIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  + G+GAR+A+ VLS ++  EL + + +Q++  + ++PGI  K 
Sbjct: 61  YGFLTPQERTTFRELLKITGIGARMALAVLSGMSVQELAQVVTMQDAARLTRLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK  +    +  +            S    A + ++ALV LGY + +   A
Sbjct: 121 AERLLLELKGKLGADLGALAGE-----------ASPSDHAADILNALVALGYSEKEGLAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +V          S+ I+LAL+A+S
Sbjct: 170 IKNV----PAGTGVSEGIKLALKALS 191


>gi|238796296|ref|ZP_04639805.1| Holliday junction DNA helicase RuvA [Yersinia mollaretii ATCC
           43969]
 gi|238719741|gb|EEQ11548.1| Holliday junction DNA helicase RuvA [Yersinia mollaretii ATCC
           43969]
          Length = 196

 Score =  161 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 54/196 (27%), Positives = 93/196 (47%), Gaps = 5/196 (2%)

Query: 11  GLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQ 70
                 VL++  GV Y +  P+     L  +G    +F +  +R+D   L+GF    +R 
Sbjct: 2   EKQPPLVLLETNGVGYEVQLPMTCFYELPDLGQEAIIFTQFVVREDAQLLYGFNDKQERA 61

Query: 71  WFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
            F  L  V GVG ++A+ +LS ++A + V ++  ++   + ++PG+  K A R++ E+K 
Sbjct: 62  LFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKTAERLVVEMKD 121

Query: 131 KAISLSSVVQQDMSCVNKEQAHIC--SMPSFAINAISALVNLGYGQDQATTAVVSVLKKE 188
           +   L+  +  +   +    +     S       A SALV LGY   +A+  V  + K  
Sbjct: 122 RFKGLNGDLFNNTGDITLPASTSSQISDADIEAEAASALVALGYKPQEASRLVSKIAK-- 179

Query: 189 KNIADDSQIIRLALRA 204
              AD   +IR ALRA
Sbjct: 180 -PGADCETLIRDALRA 194


>gi|77919931|ref|YP_357746.1| Holliday junction DNA helicase RuvA [Pelobacter carbinolicus DSM
           2380]
 gi|90135490|sp|Q3A231|RUVA_PELCD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|77546014|gb|ABA89576.1| Holliday junction DNA helicase subunit RuvA [Pelobacter
           carbinolicus DSM 2380]
          Length = 197

 Score =  161 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 107/205 (52%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +       V++DV GV Y +  P+ T   L   GD   L V TH+R+D + L
Sbjct: 1   MIALLNGQLIEKTVSQVILDVGGVGYRLLIPLSTYYALPDEGD-VRLRVHTHVREDALLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL++ ++  F LL SV GVG +VA+ +LS + A +L +++   N+K +A +PGI  K 
Sbjct: 60  FGFLTETEKDLFGLLLSVSGVGPKVALNILSHLPAADLQQALSQGNAKHLATVPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K   + +V                +      +A+SALVNLGY ++ +  A
Sbjct: 120 AERLVLELREKVGPVQAVPGNAP-------LPAETAGDLREDALSALVNLGYKENLSRKA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +       A    I++ AL+ +
Sbjct: 173 LDGI--DTAPDAPLEDILKQALKLL 195


>gi|241662010|ref|YP_002980370.1| Holliday junction DNA helicase RuvA [Ralstonia pickettii 12D]
 gi|240864037|gb|ACS61698.1| Holliday junction DNA helicase RuvA [Ralstonia pickettii 12D]
          Length = 193

 Score =  161 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 106/206 (51%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGEKVVLLTQQIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F  L  + G+GAR+A+ VLS ++  EL +++ LQ +  + +IPGI  K 
Sbjct: 61  YGFGTAAERETFRQLIKISGIGARIALAVLSGMSVAELAQAVTLQEAGRLTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK  +    V    +               A++ ++AL+ LGY   +A  A
Sbjct: 121 AERLLLELKGKLGADLGAVPGGPAV-----------SDDAVDVLNALLALGYSDKEAALA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  V          S+ I+LAL+A+S
Sbjct: 170 IKQV----PAGTGVSEGIKLALKALS 191


>gi|254468402|ref|ZP_05081808.1| Holliday junction DNA helicase RuvA [beta proteobacterium KB13]
 gi|207087212|gb|EDZ64495.1| Holliday junction DNA helicase RuvA [beta proteobacterium KB13]
          Length = 189

 Score =  161 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 94/206 (45%), Gaps = 18/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG I+G +      +V +D  G+ Y I  P+ T   L ++     L V   +R+D   L
Sbjct: 1   MIGSIRGILIDRSPPWVQVDCGGIGYEIEVPMSTYYHLPELQSDIFLHVHMVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  ++  F  L  + G+GA+VA+ +LS ++  +   +I  Q+  ++ +IPGI  K 
Sbjct: 61  FGFLTKEEKSSFKSLIKINGIGAKVALSILSGVSMDQFSNAIEQQDVSLLVKIPGIGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K               + +            + + AL  LGY +      
Sbjct: 121 AERLIVELKDK--------------QDLKLQQSSQHSKNLTDIMDALEALGYSKSDIQKV 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +    K      + ++ I+ AL+ +S
Sbjct: 167 I----KNFNEDINVNEGIKQALQWLS 188


>gi|167586148|ref|ZP_02378536.1| Holliday junction DNA helicase motor protein [Burkholderia
           ubonensis Bu]
          Length = 193

 Score =  161 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L + G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGILLEKNPPHLLVDCNGVGYEIDVPMSTFYNLPQTGERVVLLTQQIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  +R  F  L  + G+GAR+A+ VLS ++  EL +++ +Q++  + ++PGI  K 
Sbjct: 61  YGFLSPQERTTFRELLKITGIGARMALAVLSGMSVQELAQAVTMQDAARLTRLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+              ++  +       A   S    A + ++AL+ LGY + +   A
Sbjct: 121 AERL-----------LLELKGKLGADLGTLAGAASPSDHATDILNALLALGYSEKEGLAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +V          S+ I+LAL+A+S
Sbjct: 170 IKNV----PAGTGVSEGIKLALKALS 191


>gi|94264074|ref|ZP_01287873.1| DNA recombination protein, RuvA:Helix-hairpin-helix motif [delta
           proteobacterium MLMS-1]
 gi|93455490|gb|EAT05680.1| DNA recombination protein, RuvA:Helix-hairpin-helix motif [delta
           proteobacterium MLMS-1]
          Length = 212

 Score =  161 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 57/212 (26%), Positives = 106/212 (50%), Gaps = 6/212 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     D ++++V GV Y ++ P      L   G+   L+++T +R+D   L
Sbjct: 1   MIATLRGQLTQKGADSLIVEVGGVGYEVFFPAGRQDRLPPRGEELFLYIQTVVREDSFCL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   ++Q+F+LL  V GVG R+AM +L+      L  +I   +   + ++PG+  K 
Sbjct: 61  YGFVDAAEKQFFLLLLGVSGVGPRLAMNILAAAAPDVLGRAIATDDIAGLKKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSV--VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R+  ELK K     +   + +       EQ           +A SAL+NLGY   +A 
Sbjct: 121 AERLCLELKDKVDFFPAAKPLARPDQAPPAEQGADFGAQPVFQDAYSALLNLGYPPVRAR 180

Query: 179 TAVVSVLKKEKNIADDS----QIIRLALRAIS 206
           +A+  V ++ +          +++R+ LR+++
Sbjct: 181 SALEEVRRQLEQEPAGELPLPELLRITLRSLA 212


>gi|299067939|emb|CBJ39153.1| subunit A of RuvABC Holliday junction resolvasome, regulatory
           subunit [Ralstonia solanacearum CMR15]
          Length = 193

 Score =  161 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 106/206 (51%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGEKIALLTQQIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F  L  + G+GAR+A+ VLS ++  EL +++ LQ +  + +IPGI  K 
Sbjct: 61  YGFGTAAERETFRQLIKISGIGARIALAVLSGMSVAELAQAVTLQEAGRLTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK  +    V                +   A++ ++AL+ LGY   +A  A
Sbjct: 121 AERLLLELKGKLGADLGAVPGG-----------PVVSDDAVDVLNALLALGYSDKEAAQA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  V          S+ I+LAL+A+S
Sbjct: 170 IKQV----PAGTGVSEGIKLALKALS 191


>gi|86157379|ref|YP_464164.1| Holliday junction DNA helicase RuvA [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|123750528|sp|Q2IPJ6|RUVA_ANADE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|85773890|gb|ABC80727.1| Holliday junction DNA helicase subunit RuvA [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 197

 Score =  161 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G I    +D+ ++DV GV Y+++    +L+ L   G+   L V TH+R+D + L
Sbjct: 1   MIARLAGRIAEKRDDHAIVDVGGVGYLVHVSQLSLASLPPPGEPAALRVYTHVREDALDL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ +   F  L  V+GVG R A  +LS I A EL +++   +   + ++ GI  K 
Sbjct: 61  YGFATEDEEAVFRALIDVKGVGPRAAQNILSGIEARELAQAVAQGDVARLTKVQGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K ++L+              A   +         +AL+NLGY   QA   
Sbjct: 121 AERLVVELKDKLVALARAAG---------PARAGAEADVLDQLRTALLNLGYRPPQAEG- 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V   L+         +++R AL+ +
Sbjct: 171 VAEALRDSAEGRPLDELLREALKRL 195


>gi|253574942|ref|ZP_04852282.1| Holliday junction DNA helicase RuvA [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251845988|gb|EES73996.1| Holliday junction DNA helicase RuvA [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 206

 Score =  161 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 99/205 (48%), Gaps = 2/205 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G I  L  +YV++DVQGV Y ++CP    +   K  +  T++   H+R+D I L
Sbjct: 1   MIDFLRGQIAHLETEYVVLDVQGVGYRVFCP-NPYAFAAKGQETVTIYTHHHVREDAILL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++ F  L  V G+G RVA+G+LS  +   +V +I  +N   + ++PGI  K 
Sbjct: 60  FGFPTREEQKLFRKLIEVSGIGPRVALGILSGGSPDHVVAAIHQENVSFLTKLPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K   +   +   +     E       P +   A   L  LGY + +    
Sbjct: 120 AQRMILDLKDKLEGVGGTLFDPVPADVGETLGDDGNPGWP-EAREGLKALGYTEAELDKV 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +            +++ AL+ +
Sbjct: 179 WHRLKDDVGPDEAVDSVMKKALKLL 203


>gi|312892324|ref|ZP_07751819.1| Holliday junction DNA helicase subunit RuvA [Mucilaginibacter
           paludis DSM 18603]
 gi|311295108|gb|EFQ72282.1| Holliday junction DNA helicase subunit RuvA [Mucilaginibacter
           paludis DSM 18603]
          Length = 194

 Score =  161 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 99/205 (48%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +      YV+ID  GV Y I   + T S +    + C LF   H+++D   L
Sbjct: 1   MYAYINGKLAFKCPTYVIIDAGGVGYHINISLNTYSNISD-KESCKLFTWLHVKEDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + +R+ F+ L SV G+GA     +LS IT  E+  +II  +  +I +I GI  K 
Sbjct: 60  YGFADEGERRLFLHLISVSGIGANTGRMILSSITPAEIQNAIIKGDVPLIQRIKGIGPKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL+ K                    ++  + +    A+SALV LG+ ++    A
Sbjct: 120 AQRIVLELQDKLRKDGP----------DTLINVPVIHTAKDEALSALVMLGFAKNVGEKA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + + +K   +     Q+I++AL+ +
Sbjct: 170 LDNAIKSTTDNLTVEQLIKIALKNL 194


>gi|311031507|ref|ZP_07709597.1| Holliday junction DNA helicase RuvA [Bacillus sp. m3-13]
          Length = 203

 Score =  161 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 107/205 (52%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +E +  +YV+++V GV Y +  P   +  + +     T++   H+R+D + L
Sbjct: 1   MIDFIRGFVEYVSPEYVVVEVMGVGYQVNAPNPFIYQVDR-DKEVTIYTYQHVREDILAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  D+  FM L +V G+G + A+ +L+     ++V +I  ++ K + + PG+  K 
Sbjct: 60  YGFKTREDKNLFMKLLNVTGIGPKGALAILASGQPAQVVHAIENEDEKFLVKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   L      D+   + E +   +  S    A+ AL  LGYG+ +    
Sbjct: 120 ARQIILDLKGKLNDLVPSAFPDLFQPDVEVSVPGASSSALEEALEALKVLGYGEREIKKI 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++ K++       Q ++ AL+ +
Sbjct: 180 VPALQKED---LSTDQYVKRALQLL 201


>gi|124002681|ref|ZP_01687533.1| holliday junction DNA helicase RuvA [Microscilla marina ATCC 23134]
 gi|123991909|gb|EAY31296.1| holliday junction DNA helicase RuvA [Microscilla marina ATCC 23134]
          Length = 194

 Score =  161 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 96/203 (47%), Gaps = 10/203 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +      + +IDV GV Y I   + T + L   GD C L     +R+D   L
Sbjct: 1   MFAYISGKLAHKEPTFAVIDVHGVGYQINISLNTYTALPISGD-CKLHTWLQVREDAQNL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +++ F+LL SV G+GA  A+ +LS ++ +E+  +I  ++ K I  I GI +K 
Sbjct: 60  YGFTELAEKKLFLLLISVSGIGANTALVMLSSMSVSEIQTAIASEDVKAIKSIKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K       +    +             +    A+ AL+ LGY ++ A   
Sbjct: 120 AQRVILELKDKVQKEVGSIAVTPA---------TQQSAVKDEAVMALITLGYAKNVAEKN 170

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  + K + N      +I+ AL+
Sbjct: 171 VAKIFKTKGNDVKVEDVIKEALK 193


>gi|288957819|ref|YP_003448160.1| holliday junction DNA helicase [Azospirillum sp. B510]
 gi|288910127|dbj|BAI71616.1| holliday junction DNA helicase [Azospirillum sp. B510]
          Length = 208

 Score =  161 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 73/208 (35%), Positives = 117/208 (56%), Gaps = 3/208 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K+ G ++    D+V++DV GV Y++ C  RTLS +  +G+  +L VET +R+++I L
Sbjct: 1   MIAKLTGIVDSTGTDWVVLDVNGVGYLLSCSNRTLSRMV-VGERLSLVVETFIREERIVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF    +R WF LL ++QGVGAR+A+ +L  +   +L  +I  Q+   + +  G+  K+
Sbjct: 60  HGFGDQAERDWFKLLTTIQGVGARLALSILGVLDPDQLTRAIAAQDKTALVRADGVGPKV 119

Query: 121 ASRIMTELKGKAIS--LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A+RI+ ELK K  +  L               A +        +A+SALVNLGYG+ +A 
Sbjct: 120 AARILNELKDKVGNLALGPAAAAGAPAGKGAPAAVPGASPALADAVSALVNLGYGRSEAF 179

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
            AVV+  +   + A  S +IR  L+ +S
Sbjct: 180 GAVVAAGRVLGDDAGVSDLIRQGLKELS 207


>gi|186477304|ref|YP_001858774.1| Holliday junction DNA helicase RuvA [Burkholderia phymatum STM815]
 gi|229560012|sp|B2JGU4|RUVA_BURP8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|184193763|gb|ACC71728.1| Holliday junction DNA helicase RuvA [Burkholderia phymatum STM815]
          Length = 193

 Score =  161 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 103/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++LID  GV Y +  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGVLLEKNPPHLLIDCNGVGYEVDVPMSTFYNLPGTGEKVVLLTQMIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  + G+GAR+A+ VLS ++  EL +++ +Q++  + ++PGI  K 
Sbjct: 61  YGFLTPQERSTFRELLKITGIGARMALAVLSGMSVQELSQTVTMQDAARLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+              ++  +       A   S    A + ++AL+ LGY + +   A
Sbjct: 121 AERL-----------LLELKGKLGADLGAMAGAASQSDHASDILNALLALGYSEKEGLAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +V          S+ I+LAL+A+S
Sbjct: 170 IKNV----PAGTGVSEGIKLALKALS 191


>gi|300705140|ref|YP_003746743.1| subunit A of ruvABC holliday junction resolvasome, regulatory
           subunit [Ralstonia solanacearum CFBP2957]
 gi|299072804|emb|CBJ44159.1| subunit A of RuvABC Holliday junction resolvasome, regulatory
           subunit [Ralstonia solanacearum CFBP2957]
          Length = 193

 Score =  161 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 102/206 (49%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGEKVVLLTQQIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R+ F  L  + G+GAR+A+ VLS ++  EL +++ LQ +  + +IPGI  K 
Sbjct: 61  YGFGSAAERETFRQLIKISGIGARIALAVLSGMSVAELAQAVTLQEAGRLTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+              ++  +           +M   A++ ++AL+ LGY   +A  A
Sbjct: 121 AERL-----------LLELKGKLGADLGAAPGGPAMSDDAVDVLNALLALGYSDKEAALA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  V          S+ I+LAL+A+S
Sbjct: 170 IKQV----PAGTGVSEGIKLALKALS 191


>gi|255038209|ref|YP_003088830.1| Holliday junction DNA helicase RuvA [Dyadobacter fermentans DSM
           18053]
 gi|254950965|gb|ACT95665.1| Holliday junction DNA helicase RuvA [Dyadobacter fermentans DSM
           18053]
          Length = 196

 Score =  161 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 104/203 (51%), Gaps = 7/203 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +      Y +IDV GV Y +   ++T + L  IG  C L    ++R+D   L
Sbjct: 1   MIAYVNGIVTYKDPAYAIIDVNGVGYEVRISLQTYTSLPDIGARCKLVTFLNIREDAHVL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + +++ F+ L S+ G+G   A+ +LS ++++E+ + II ++ ++I  I GI  K 
Sbjct: 61  YGFWGNDEKKLFLDLTSISGIGPSTALVMLSSLSSSEIRQGIIDEDLRLIQSIKGIGSKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K      V     S          S  +    A++ALV LG  +  A  +
Sbjct: 121 AQRVILELRDKIRKEELVSTGPRSVE-------ASSNTLRSEALAALVTLGIPKATAEKS 173

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           + +++K+E        +I+LALR
Sbjct: 174 LDAIIKREGPSISVENLIKLALR 196


>gi|149370922|ref|ZP_01890517.1| Holliday junction DNA helicase [unidentified eubacterium SCB49]
 gi|149355708|gb|EDM44266.1| Holliday junction DNA helicase [unidentified eubacterium SCB49]
          Length = 193

 Score =  161 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 100/205 (48%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  ++G +       V+++  GV Y I   + T S L    +   L+    +R+D   L
Sbjct: 1   MVHHVQGKMIEKNPTDVVVECNGVGYFINISLHTFSQLPST-ENVLLYTHLQVREDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + ++R+ F LL SV GVGA +A  +LS +   +++++I+ ++  VI  + GI  K 
Sbjct: 60  YGFSTKVEREIFRLLISVSGVGASIARTMLSSLNPKQVMDAIVSEDVSVIQSVKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K I +  +                S  +    A+SAL  LG+ +  A   
Sbjct: 120 AQRVILDLKDKIIKVFGMS----------AISAVSSNTNKNEALSALETLGFARKVAEKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              ++++    A   +II+ AL+ +
Sbjct: 170 CDKIVQQHPE-ATVEEIIKHALKNL 193


>gi|134294766|ref|YP_001118501.1| Holliday junction DNA helicase RuvA [Burkholderia vietnamiensis G4]
 gi|166230530|sp|A4JBL3|RUVA_BURVG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|134137923|gb|ABO53666.1| Holliday junction DNA helicase RuvA [Burkholderia vietnamiensis G4]
          Length = 193

 Score =  161 bits (406), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L + G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGILLEKNPPHLLVDCNGVGYEIDVPMSTFYNLPQTGERVVLLTQQIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  + G+GAR+A+ VLS ++  EL +++ +Q++  + ++PGI  K 
Sbjct: 61  YGFLTPQERTTFRELLKITGIGARMALAVLSGMSVQELAQAVTMQDAARLTRLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+              ++  +       A   S    A + ++ALV LGY + +   A
Sbjct: 121 AERL-----------LLELKGKLGADLGALAGAASPSDHAADILNALVALGYSEKEGLAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +V          S  I+LAL+A+S
Sbjct: 170 IKNV----PAGTGVSDGIKLALKALS 191


>gi|296283076|ref|ZP_06861074.1| Holliday junction DNA helicase RuvA [Citromicrobium bathyomarinum
           JL354]
          Length = 209

 Score =  161 bits (406), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 112/206 (54%), Gaps = 8/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K+ G ++    D+ +IDV GV Y+++C  RTL  LG  G    LF +  + ++ +RL
Sbjct: 11  MIAKLTGTLDATGPDWAVIDVGGVGYLVHCSTRTLDALGSEGGEARLFTDLQVSENDMRL 70

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF    +R WF LL SVQGVG++VA+ +LS ++A E+  +    ++ ++A+  G+  K+
Sbjct: 71  LGFAEAAERDWFRLLTSVQGVGSKVALAILSVLSAGEVQAACASGDAAMVARANGVGPKL 130

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL+ KA +L               A        + +A+SAL NLG+    A  A
Sbjct: 131 AGRIVNELQDKAGALPVAPGG--------VAVAAPKGGASADAVSALENLGFKPAIAAKA 182

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V   + +    A + ++IR+AL+  +
Sbjct: 183 VAEAMGELGEGASEGELIRVALKKAA 208


>gi|207727946|ref|YP_002256340.1| holliday junction dna helicase ruva protein [Ralstonia solanacearum
           MolK2]
 gi|206591189|emb|CAQ56801.1| holliday junction dna helicase ruva protein [Ralstonia solanacearum
           MolK2]
          Length = 193

 Score =  161 bits (406), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 67/206 (32%), Positives = 107/206 (51%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGEKVVLLTQQIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R+ F  L  + G+GAR+A+ VLS ++  EL +++ LQ +  + +IPGI  K 
Sbjct: 61  YGFGSAAERETFRQLIKISGIGARIALAVLSGMSVAELAQAVTLQEAGRLTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK  +    V    +           M   A++ ++AL+ LGY   +A  A
Sbjct: 121 AERLLLELKGKLGADLGAVPGGPA-----------MSDDAVDVLNALLALGYSDKEAALA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  V          S+ I+LAL+A+S
Sbjct: 170 IKQV----PAGTGVSEGIKLALKALS 191


>gi|330815560|ref|YP_004359265.1| Holliday junction resolvasome, DNA-binding subunit [Burkholderia
           gladioli BSR3]
 gi|327367953|gb|AEA59309.1| Holliday junction resolvasome, DNA-binding subunit [Burkholderia
           gladioli BSR3]
          Length = 193

 Score =  160 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 103/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y +  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGTLLEKNPPHLLVDCNGVGYELDVPMSTFYNLPHTGERVVLLTQLIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  + G+GAR+A+ VLS ++  EL + + LQ+S  + ++PGI  K 
Sbjct: 61  YGFLTPQERTTFRELLKISGIGARMALAVLSGMSVQELSQVVTLQDSARLTRLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+              ++  +     E A   S    A + ++AL+ LGY + +A  A
Sbjct: 121 AERL-----------LLELKGKLGADLGELAGQASQSDHAADILNALLALGYSEKEALAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +V          S  I+L+L+A+S
Sbjct: 170 IKNV----PAGTGVSDGIKLSLKALS 191


>gi|311104199|ref|YP_003977052.1| holliday junction DNA helicase RuvA [Achromobacter xylosoxidans A8]
 gi|310758888|gb|ADP14337.1| holliday junction DNA helicase RuvA [Achromobacter xylosoxidans A8]
          Length = 190

 Score =  160 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 64/205 (31%), Positives = 102/205 (49%), Gaps = 17/205 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       + +DV G+ Y I  P+ TL  L   G   TL+    +R+D   L
Sbjct: 1   MIGRITGTLIEKLPPTICVDVGGLGYDIDVPMSTLYSLPDTGARVTLYTHLTVREDAHIL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L  V G+GAR A+ VLS ++  +L ++I LQ S  + ++PGI  K 
Sbjct: 61  YGFASAGERSAFRELIKVSGIGARTALSVLSGLSVADLAQAITLQESGRLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++GK  +                A   + P    + ++AL+ LGY + ++ +A
Sbjct: 121 AERLLLEMRGKLGA-------------DIGASPHAAPDNQSDILNALLALGYSEKESLSA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
               LK        S  I+ AL+A+
Sbjct: 168 ----LKTLPEGVGVSDGIKQALKAL 188


>gi|78065251|ref|YP_368020.1| Holliday junction DNA helicase motor protein [Burkholderia sp. 383]
 gi|90134649|sp|Q39JJ0|RUVA_BURS3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|77965996|gb|ABB07376.1| DNA recombination protein, RuvA [Burkholderia sp. 383]
          Length = 193

 Score =  160 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 105/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L + G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGILLEKNPPHLLVDCNGVGYEIDVPMSTFYNLPQNGERVVLLTQQIVREDANLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  + G+GAR+A+ VLS ++  EL +++ +Q++  + ++PGI  K 
Sbjct: 61  YGFLTPQERTTFRELLKITGIGARMALAVLSGMSVQELAQAVTMQDAARLTRLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+              ++  +     E A   S    A + ++AL+ LGY + +   A
Sbjct: 121 AERL-----------LLELKGKLGADLGELAGAASPSDHATDILNALLALGYSEKEGLAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +V          S+ I+LAL+A+S
Sbjct: 170 IKNV----PAGTGVSEGIKLALKALS 191


>gi|83308729|emb|CAJ01639.1| holliday junction dna helicase, ruvA [Methylocapsa acidiphila]
          Length = 204

 Score =  160 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 87/206 (42%), Positives = 130/206 (63%), Gaps = 3/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK++G ++   ED+V++DV GV YI++C  RTL  L ++G+  +L +ET MR+D +RL
Sbjct: 1   MIGKLRGVVDSFGEDFVILDVNGVGYIVHCSSRTLQRLSRVGELASLAIETQMREDSLRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ DR WF LLQSVQGVGA+VA+ V   + A+EL  +I  Q+   IA+  G+  K+
Sbjct: 61  FGFSTEADRDWFKLLQSVQGVGAKVALAVQGILEASELAAAIAFQDKAAIARASGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ ELK KA +       ++     E A   + P+   +AISALV LGYG+ QA  A
Sbjct: 121 AARIVAELKDKAPAAGG---AEVHLQAAEGASGQAAPTAVTDAISALVTLGYGRPQAAAA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + +      A  +++IR  L+ +S
Sbjct: 178 VAASVAALGEGAATAELIRRGLKELS 203


>gi|238026246|ref|YP_002910477.1| Holliday junction DNA helicase RuvA [Burkholderia glumae BGR1]
 gi|237875440|gb|ACR27773.1| Holliday junction resolvasome, DNA-binding subunit [Burkholderia
           glumae BGR1]
          Length = 193

 Score =  160 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 104/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y +  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGTLLEKNPPHLLVDCNGVGYELDVPMSTFYNLPPTGERVVLLTQLIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  + G+GAR+A+ VLS ++  EL + + +Q++  + ++PGI  K 
Sbjct: 61  YGFLTPQERSAFRELLKITGIGARMALAVLSGMSVQELSQVVTIQDAARLQRLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+              ++  +     E A   S    A + ++AL+ LGY + +A  A
Sbjct: 121 AERL-----------LLELKGKLGADLGELAGQASQSDHAADILNALLALGYSEKEALAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +V          S+ I+L+L+A+S
Sbjct: 170 IKNV----PAGTGVSEGIKLSLKALS 191


>gi|170699606|ref|ZP_02890645.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria
           IOP40-10]
 gi|171319639|ref|ZP_02908733.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria MEX-5]
 gi|172059669|ref|YP_001807321.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria MC40-6]
 gi|229560008|sp|B1YTE0|RUVA_BURA4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|170135488|gb|EDT03777.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria
           IOP40-10]
 gi|171095130|gb|EDT40136.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria MEX-5]
 gi|171992186|gb|ACB63105.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria MC40-6]
          Length = 193

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L + G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGILLEKNPPHLLVDCNGVGYEIDVPMSTFYNLPQTGERVVLLTQQIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  + G+GAR+A+ VLS ++  EL +++ +Q++  + ++PGI  K 
Sbjct: 61  YGFLTPQERTTFRELLKITGIGARMALAVLSGMSVQELAQAVTMQDAARLTRLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+              ++  +       A   S    A + ++ALV LGY + +   A
Sbjct: 121 AERL-----------LLELKGKLGADLGALAGAASQSDHATDILNALVALGYSEKEGLAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +V          S+ I+LAL+A+S
Sbjct: 170 IKNV----PAGTGVSEGIKLALKALS 191


>gi|256425896|ref|YP_003126549.1| Holliday junction DNA helicase RuvA [Chitinophaga pinensis DSM
           2588]
 gi|256040804|gb|ACU64348.1| Holliday junction DNA helicase RuvA [Chitinophaga pinensis DSM
           2588]
          Length = 195

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 102/205 (49%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +       V IDVQGV Y +   + T S +    + C L    H+++D   L
Sbjct: 1   MIAYLNGKLSYKSPAMVHIDVQGVGYEVQISLNTYSRIQGS-ESCKLLTYLHIKEDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F+LL SV G+GA  A  +LS +   ++  +I ++N K++  I GI  K 
Sbjct: 60  YGFADDAERQMFLLLISVSGIGANTARMMLSSLQPEDIQRAIAMENEKMLESIKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K      +           Q  +    +   +A++ALV LG  ++ A  A
Sbjct: 120 AKRVILELKDKVKKQKDI---------GNQISVTPNNTIQEDALNALVTLGIARNVAEQA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK E  + D   +I+ +L+ +
Sbjct: 171 INKVLKAEPLLLDLEALIKKSLKGL 195


>gi|46445654|ref|YP_007019.1| Holliday junction DNA helicase [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|81627839|sp|Q6MFA5|RUVA_PARUW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|46399295|emb|CAF22744.1| probable Holliday junction DNA helicase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 201

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 58/203 (28%), Positives = 106/203 (52%), Gaps = 4/203 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +        ++DV GV Y+++ P R L  L +IG+    +    +R+    L
Sbjct: 1   MFAYIKGVLAFFNPSQAIVDVHGVGYLLFIPCRLLGQLPQIGEPVQFYTTYVVREFSHTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  +R  F +L +V G+G ++A+ ++  ++ +EL  +++ Q+   + ++PG+  K 
Sbjct: 61  YGFLSYQERDIFEILMNVTGIGPKMALSLIGHLSMSELQIAVMRQDLSTLCRVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K  ++  +   D    + E            +A+ AL+NLGY Q  A  A
Sbjct: 121 AERLIVELKDKLAAIGHLDTSD----HIEPLTQDPKSKSVQDAMLALINLGYNQTTAQKA 176

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           +   +K+     D +Q+I +AL+
Sbjct: 177 IKQGMKELPEEIDLAQLITVALK 199


>gi|293603639|ref|ZP_06686060.1| crossover junction ATP-dependent DNA helicase RuvA [Achromobacter
           piechaudii ATCC 43553]
 gi|292818075|gb|EFF77135.1| crossover junction ATP-dependent DNA helicase RuvA [Achromobacter
           piechaudii ATCC 43553]
          Length = 190

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 103/206 (50%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       + +DV G+ Y I   + TL  L + G   TL+    +R+D   L
Sbjct: 1   MIGRITGTLIEKLPPTICVDVGGLGYDIDVSMTTLYSLPETGARVTLYTHLTVREDAHIL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+GAR A+ VLS ++  +L ++I LQ S  + ++PGI  K 
Sbjct: 61  YGFGTAGERSAFRELIKVSGIGARTALSVLSGMSVADLAQAITLQESGRLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++GK  +                A   + P    + ++AL+ LGY + ++ +A
Sbjct: 121 AERLLLEMRGKLGA-------------DIGAASHATPDHQSDILNALLALGYSEKESLSA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
               LK        S  I+ AL+A++
Sbjct: 168 ----LKGLPEGVGVSDGIKQALKALA 189


>gi|83749323|ref|ZP_00946320.1| RuvA [Ralstonia solanacearum UW551]
 gi|207742352|ref|YP_002258744.1| holliday junction dna helicase ruva protein [Ralstonia solanacearum
           IPO1609]
 gi|83724001|gb|EAP71182.1| RuvA [Ralstonia solanacearum UW551]
 gi|206593742|emb|CAQ60669.1| holliday junction dna helicase ruva protein [Ralstonia solanacearum
           IPO1609]
          Length = 193

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 106/206 (51%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGEKVVLLTQQIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R+ F  L  + G+GAR+A+ VLS ++  EL +++ LQ +  + +IPGI  K 
Sbjct: 61  YGFGSAAERETFRQLIKISGIGARIALAVLSGMSVAELAQAVTLQEAGRLTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK  +    V    +           M    ++ ++AL+ LGY   +A  A
Sbjct: 121 AERLLLELKGKLGADLGAVPGGPA-----------MSDDTVDVLNALLALGYSDKEAALA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  V          S+ I+LAL+A+S
Sbjct: 170 IKQV----PAGTGVSEGIKLALKALS 191


>gi|87198447|ref|YP_495704.1| Holliday junction DNA helicase RuvA [Novosphingobium
           aromaticivorans DSM 12444]
 gi|123722701|sp|Q2GBA3|RUVA_NOVAD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|87134128|gb|ABD24870.1| Holliday junction DNA helicase RuvA [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 204

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 118/206 (57%), Gaps = 3/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K+ G ++    D+ +IDV GV Y+++C  +TL+ LG  GD   +  E  + +   RL
Sbjct: 1   MIAKLTGILDDTGPDWAVIDVNGVGYLVHCSAKTLTHLGLRGDKVVVHTEMQVSETDQRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF S  +R WF LL +VQGVG++VA+ +LS ++  EL  +    +S ++A+  G+  K+
Sbjct: 61  IGFTSAGERAWFRLLTAVQGVGSKVALAILSALSVEELQRACAHGDSAMVARANGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ ELK KA  L+             +A +    + + +A+SAL NLG+    A++A
Sbjct: 121 ASRIVNELKDKAGGLAGYASP---VGPGGEAFVAPPGNASADAVSALQNLGFKPAVASSA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + +K+    A  + ++R+AL+  +
Sbjct: 178 VAAAVKELGEDAGLNDLVRVALKRAA 203


>gi|254473163|ref|ZP_05086561.1| Holliday junction DNA helicase RuvA [Pseudovibrio sp. JE062]
 gi|211957884|gb|EEA93086.1| Holliday junction DNA helicase RuvA [Pseudovibrio sp. JE062]
          Length = 204

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 85/206 (41%), Positives = 133/206 (64%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++   +D+VL+DVQGVCY ++CP R L  L ++G+   L +ET +R+D I+L
Sbjct: 1   MIGKLKGVVDSYGDDFVLLDVQGVCYQVHCPSRVLQQLPRVGEAAVLAIETMVREDMIKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF  D +R+WF +L +VQGVGA+VA+G+L  + A+E+  +I L +   I + PG+  ++
Sbjct: 61  FGFAEDSEREWFRILMTVQGVGAKVALGILGIMKASEVANAIALGDKTAITRAPGVGKRV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA + +SV    ++       ++ S P    +A+SAL NLGY   QA+ A
Sbjct: 121 AERIVTELKDKAPAFASVEDDTIAVSQSVAENVASRP--VADAVSALSNLGYQPAQASAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + +K     A   ++IRL L+ ++
Sbjct: 179 VAAAVKTAGEDASAEKLIRLGLKELA 204


>gi|115350636|ref|YP_772475.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria AMMD]
 gi|122324004|sp|Q0BI82|RUVA_BURCM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|115280624|gb|ABI86141.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria AMMD]
          Length = 193

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L + G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGILLEKNPPHLLVDCNGVGYEIDVPMSTFYNLPQTGERVVLLTQQIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  + G+GAR+A+ VLS ++  EL +++ +Q++  + ++PGI  K 
Sbjct: 61  YGFLTPQERTTFRELLKITGIGARMALAVLSGMSVQELAQAVTMQDAARLTRLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+              ++  +       A   S    A + ++ALV LGY + +   A
Sbjct: 121 AERL-----------LLELKGKLGADLGALAGAASQSDHAADILNALVALGYSEKEGLAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +V          S+ I+LAL+A+S
Sbjct: 170 IKNV----PAGTGVSEGIKLALKALS 191


>gi|206561676|ref|YP_002232441.1| Holliday junction DNA helicase RuvA [Burkholderia cenocepacia
           J2315]
 gi|229560010|sp|B4EES6|RUVA_BURCJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|198037718|emb|CAR53661.1| holliday junction DNA helicase [Burkholderia cenocepacia J2315]
          Length = 193

 Score =  160 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 104/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L + G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGILLEKNPPHLLVDCNGVGYEIDVPMSTFYNLPQTGERVVLLTQQIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  + G+GAR+A+ VLS ++  EL +++ +Q++  + ++PGI  K 
Sbjct: 61  YGFLTQQERTTFRELLKITGIGARMALAVLSGMSVQELAQAVTMQDAARLTRLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+              ++  +       A   S    A + ++AL+ LGY + +   A
Sbjct: 121 AERL-----------LLELKGKLGADLGALAGAASPSDHATDILNALLALGYSEKEGLAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +V          S+ I+LAL+A+S
Sbjct: 170 IKNV----PAGTGVSEGIKLALKALS 191


>gi|163796368|ref|ZP_02190329.1| elongation factor P [alpha proteobacterium BAL199]
 gi|159178510|gb|EDP63052.1| elongation factor P [alpha proteobacterium BAL199]
          Length = 208

 Score =  160 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 68/207 (32%), Positives = 120/207 (57%), Gaps = 1/207 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K+KG ++   +   +IDV GV Y+++   RTL+ LG+ G   ++ V+TH+R+D I L
Sbjct: 1   MIAKLKGLLDSTGDGMAVIDVGGVGYLVFASARTLTALGEPGSAVSVLVDTHVREDHIHL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F +LQ+VQGVGA+ A+ +LS ++  ++  +I  Q+  ++ +  G+  K+
Sbjct: 61  YGFASAAERSCFRMLQTVQGVGAKHALSILSVLSPEDVFTAIAAQDRVMLTRADGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC-SMPSFAINAISALVNLGYGQDQATT 179
             RI+ ELK K ++++  +  D +   +  A           +A+SAL NLGYG+ +A  
Sbjct: 121 GQRIVNELKDKTVNVALGLGADATGPARAAAVAGQPGDDTVADAVSALSNLGYGRAEAYG 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV +  +         ++I LAL+ ++
Sbjct: 181 AVSTARQALGEGVALDKLITLALKELA 207


>gi|326791465|ref|YP_004309286.1| Holliday junction DNA helicase RuvA [Clostridium lentocellum DSM
           5427]
 gi|326542229|gb|ADZ84088.1| Holliday junction DNA helicase RuvA [Clostridium lentocellum DSM
           5427]
          Length = 197

 Score =  160 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 106/205 (51%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E + E+ ++I+V GV Y ++C  RTLS L    +   +++  H+++D   L
Sbjct: 1   MITYLVGTLEHIGENTLVIEVYGVGYEVFCSSRTLSELNGTREKVKIYIHEHIKEDGHDL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    DR+ F  L SV G+G +  M V +  ++ E++E I+ Q+SK ++++ GI  K 
Sbjct: 61  YGFYHMEDRELFRKLISVSGIGPKGGMQVFNTYSSQEVIEIILNQDSKALSKVSGIGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK     L       +    K++       S    AI AL  LGY   +A  A
Sbjct: 121 AQRIILELKDSIGKLFVPDLSLLETGLKDE-------SAKAEAIEALEALGYAAQEARKA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++       A+  ++I+ AL  +
Sbjct: 174 VEAIY---DYKANSEELIKKALSLL 195


>gi|124268420|ref|YP_001022424.1| Holliday junction DNA helicase RuvA [Methylibium petroleiphilum
           PM1]
 gi|166230565|sp|A2SKV0|RUVA_METPP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|124261195|gb|ABM96189.1| holliday junction DNA helicase [Methylibium petroleiphilum PM1]
          Length = 192

 Score =  160 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 100/206 (48%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+G++ G +       VLIDV GV Y +  P+ +   L  IG+  TL     +R+D   L
Sbjct: 1   MLGRLTGLLAEKSPPQVLIDVGGVGYEVDVPMSSFFNLPAIGEKVTLLTHFVVREDAQVL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  +R+ F +L  + GVG R A+ +LS +T  +L +++  Q++  + ++PGI  K 
Sbjct: 61  FGFLTAPERETFRMLIKISGVGPRTALSILSGLTVGDLAQAVTAQDASRLVKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+              ++  +                  + + AL+ LGY + +A  A
Sbjct: 121 AERL-----------LLELKGKLGADLGPAIGGKPASDAQADILQALIALGYSEREAQAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V ++  +       S  I+LAL+A++
Sbjct: 170 VKALPAEVG----VSDGIKLALKALA 191


>gi|114570973|ref|YP_757653.1| Holliday junction DNA helicase RuvA [Maricaulis maris MCS10]
 gi|122315334|sp|Q0ALX8|RUVA_MARMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|114341435|gb|ABI66715.1| Holliday junction DNA helicase RuvA [Maricaulis maris MCS10]
          Length = 213

 Score =  160 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 76/213 (35%), Positives = 116/213 (54%), Gaps = 8/213 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  L  D +++DV GV Y++    RTLS L +      L +ETH+R+D  +L
Sbjct: 1   MIGMLTGRVAALGADELVLDVSGVGYLVGAGARTLSRL-EPDQDIVLHIETHVREDAFKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL D+DR WF+ LQ++QGVGA+ A  +L  +  +E+  +  L +    A+  G+  K+
Sbjct: 60  YGFLDDIDRAWFVHLQNIQGVGAKAAFAILDTVPVSEIANAAALGDKSTFARAKGVGPKL 119

Query: 121 ASRIMTELKGKAISLS-------SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           A+RI TELK KA            V   D +      A          +A+SALVNLGY 
Sbjct: 120 ATRIATELKDKAPPTGRSFSIGLPVHSDDGTTGGAPVAPAGGDSLAREDAVSALVNLGYN 179

Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           + QA  AV  +L+   + A    +IRL+L+ ++
Sbjct: 180 ESQARQAVAKILRDADSEAPLGDVIRLSLKELA 212


>gi|149196353|ref|ZP_01873408.1| Holliday junction DNA helicase motor protein [Lentisphaera araneosa
           HTCC2155]
 gi|149140614|gb|EDM29012.1| Holliday junction DNA helicase motor protein [Lentisphaera araneosa
           HTCC2155]
          Length = 206

 Score =  160 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 57/207 (27%), Positives = 100/207 (48%), Gaps = 3/207 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +  L     +IDV GV Y +  P+ T   L K+G    L +   +R+D + L
Sbjct: 1   MIAHLKGQLVELELSNAVIDVGGVGYYVDIPMSTYDRLPKVGSPVALRIHMTVREDAMNL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +D +R +F ++ SV G+G ++A+  LS +      E+I   N K++++I G+  ++
Sbjct: 61  YGFATDEERSFFRMITSVSGIGPKIALAALSALPTETFCEAIQEGNIKLLSKISGVGKRM 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K  +L           + + +          ++I AL  LGY  D     
Sbjct: 121 AERMVVELRDKVGALGMTSAFVAKVADDDMS--AQDKEAFNDSIMALEALGYRPDTIRKT 178

Query: 181 VVSVLKKE-KNIADDSQIIRLALRAIS 206
           V ++             II+ AL A++
Sbjct: 179 VKTIFDGLSPAQRSSENIIKAALSAMN 205


>gi|255526659|ref|ZP_05393564.1| Holliday junction DNA helicase RuvA [Clostridium carboxidivorans
           P7]
 gi|296187164|ref|ZP_06855561.1| Holliday junction DNA helicase RuvA [Clostridium carboxidivorans
           P7]
 gi|255509639|gb|EET85974.1| Holliday junction DNA helicase RuvA [Clostridium carboxidivorans
           P7]
 gi|296048199|gb|EFG87636.1| Holliday junction DNA helicase RuvA [Clostridium carboxidivorans
           P7]
          Length = 197

 Score =  160 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 110/205 (53%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I+G   G+ +DY++++  G+ Y IY    TL+ + KI +   L+++  +R+D I L
Sbjct: 1   MYEYIRGTYAGMNKDYIVVENNGIGYKIYTSGSTLAKIPKINEEIMLYLQQIVREDFIGL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +   F LL S+ GVGA+ A+ +LS  +   L  +I+  + K+I + PGI  K+
Sbjct: 61  YGFLTKEELSMFNLLLSINGVGAKAALSLLSISSVNNLKYAILSGDEKLITRAPGIGKKM 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           + RI+ ELK K         +D+     +   I      +  A+ ALV LGY + +A  A
Sbjct: 121 SQRIILELKDKVK------PEDVDISQGDTIEIDETAGNSSEALEALVALGYSEKEANKA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++ KK+        IIR AL+ +
Sbjct: 175 INTIDKKD----SVENIIRNALKFL 195


>gi|160879481|ref|YP_001558449.1| Holliday junction DNA helicase RuvA [Clostridium phytofermentans
           ISDg]
 gi|189045749|sp|A9KNV9|RUVA_CLOPH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|160428147|gb|ABX41710.1| Holliday junction DNA helicase RuvA [Clostridium phytofermentans
           ISDg]
          Length = 203

 Score =  160 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 63/203 (31%), Positives = 102/203 (50%), Gaps = 2/203 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  I+G +  + E+YV++D  G+ Y I+ P    S L  IGD         +R+D + L
Sbjct: 1   MLAFIQGELAEVKENYVVVDNNGMGYEIFIPHTVHSYLPAIGDKVKFHTYLQVREDGMAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  D   F LL +V G+G + A+G+LS I+  +L  +++ ++ K I++ PGI  K 
Sbjct: 61  FGFLNREDLAMFKLLITVNGIGPKGAIGILSAISTDDLRFAVLAEDVKAISKAPGIGTKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+++ ELK K     +      S          +       AI ALV LGY    A  A
Sbjct: 121 ASKLILELKDKFKLEDAFEATFQSNQVISTGGKGNNDGIREEAIQALVALGYSATDALKA 180

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V +V  +  +      +++ +LR
Sbjct: 181 VKAV--EITSNMTSEDVLKFSLR 201


>gi|289209177|ref|YP_003461243.1| Holliday junction DNA helicase RuvA [Thioalkalivibrio sp. K90mix]
 gi|288944808|gb|ADC72507.1| Holliday junction DNA helicase RuvA [Thioalkalivibrio sp. K90mix]
          Length = 201

 Score =  160 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 58/204 (28%), Positives = 96/204 (47%), Gaps = 7/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +     + V+ID  GV Y +  P+ TL+ L + G    L     +R+D  +L
Sbjct: 1   MIARLEGTLISREVNGVVIDAGGVGYEVEVPLSTLAALPEPGATVVLTTHLVVREDAHQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+   DR  F  L  V G+GA++A+ +LS     EL   I   +   +A++PGI  + 
Sbjct: 61  FGFMHKRDRDLFRRLIRVNGIGAKLALAMLSTYAGDELAGLISGGDVTGLAKVPGIGKRT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL  +   +        +    +             A++AL +LGY +  A   
Sbjct: 121 AERVVLELGERLAEMGFAAAPGGADAGADIPGAAMDG----EALAALESLGYPRASAEKM 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V +V  +         ++RLALRA
Sbjct: 177 VAAVRDQAD---SVESLVRLALRA 197


>gi|260576656|ref|ZP_05844643.1| Holliday junction DNA helicase RuvA [Rhodobacter sp. SW2]
 gi|259021141|gb|EEW24450.1| Holliday junction DNA helicase RuvA [Rhodobacter sp. SW2]
          Length = 224

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 79/222 (35%), Positives = 121/222 (54%), Gaps = 17/222 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGKI G I+    D+VLIDV+GV YI++   RTL+ L   G+   L+ E  +R+D ++L
Sbjct: 1   MIGKISGRIDYRGADHVLIDVRGVGYIVHVSDRTLAGLPGPGEAVALYTELLVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + L+++W  LL +VQGVGA+ AM +L  + A     +I L +++ I   PGI  KI
Sbjct: 61  FGFPTLLEKEWHRLLMTVQGVGAKAAMAILGTLGAEGAARAISLGDARSIQAAPGIGPKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP----------------SFAINAI 164
           A R++ ELK KA  + ++     +      A     P                ++  +A+
Sbjct: 121 AQRVVLELKSKAPGVMAMGAALSARAEGNDADAVIEPLPVARKPTPAPTQSRAAYTADAL 180

Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           SAL NLGYG   A+ AV     +    AD + +IR+AL+ ++
Sbjct: 181 SALTNLGYGPVDASQAVAQAAGEAPE-ADTATLIRIALKLLA 221


>gi|328953690|ref|YP_004371024.1| Holliday junction ATP-dependent DNA helicase ruvA [Desulfobacca
           acetoxidans DSM 11109]
 gi|328454014|gb|AEB09843.1| Holliday junction ATP-dependent DNA helicase ruvA [Desulfobacca
           acetoxidans DSM 11109]
          Length = 198

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 107/206 (51%), Gaps = 10/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     DY++I V GV Y  + P+ T   L +      L + T ++ D ++L
Sbjct: 1   MIAYLEGELFQKRPDYLIIKVGGVGYQTFIPLSTFYQLPEPPASVALHIHTQVQTDSLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           + F +  ++Q F+ L S+  VG R+A+ +LS I+  +L +++I  +   +A IPG+  K 
Sbjct: 61  YAFATLDEKQTFIKLLSIPRVGPRLALNILSGISPQDLAQTLIQGDIPRLAAIPGLGRKS 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RIM ELKGK    ++ V    S             +   +A+SAL+NLGY +  A   
Sbjct: 121 AERIMVELKGKLRPDATAVSALSSG---------PQGALWEDALSALINLGYSRTLAEEV 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  V   EK +    +I+RL+L  ++
Sbjct: 172 LRHVQLHEKPL-TLEEILRLSLSRLA 196


>gi|260753286|ref|YP_003226179.1| Holliday junction DNA helicase RuvA [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258552649|gb|ACV75595.1| Holliday junction DNA helicase RuvA [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 213

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 69/209 (33%), Positives = 110/209 (52%), Gaps = 5/209 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +     D  +IDV GV Y++    R L    +I    T+ +ET +R+D I L
Sbjct: 1   MIARLVGFLVEKNSDSAVIDVNGVGYLVQLSGRALDYFSEIEGEITVHIETQIREDSITL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S L+R WF LL SVQGVG + A+ +L+ +T   +  +I   +  +I +  GI  KI
Sbjct: 61  FGFASYLERDWFRLLTSVQGVGGKAALAILTALTCDAISVAISSGDKTMICRSNGIGPKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQ-----DMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           A RI+ ELK K  +++           +  +++  A      +F  +A+SAL+NLG+   
Sbjct: 121 AQRIINELKEKPAAIALFSSAKGDHLAVEDISQPAASAHHAGNFVADAVSALLNLGFKPA 180

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRA 204
           +A   V    ++  + A    ++RLALR 
Sbjct: 181 EAQRVVQLASEELGDQATLDSLVRLALRL 209


>gi|83592424|ref|YP_426176.1| DNA recombination protein RuvA [Rhodospirillum rubrum ATCC 11170]
 gi|123739581|sp|Q2RVF6|RUVA_RHORT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|83575338|gb|ABC21889.1| DNA recombination protein RuvA [Rhodospirillum rubrum ATCC 11170]
          Length = 212

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 78/209 (37%), Positives = 118/209 (56%), Gaps = 6/209 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K+KG ++ + ED+ +IDV GV Y+++CP R L+ L   G    L VET +R+D I L
Sbjct: 1   MIAKLKGLVDSVAEDHAVIDVGGVGYLVFCPARVLTRLPSPGQAVALVVETQVREDHISL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL   +R WF LL +VQGVG++VA+ VLS ++A ++ ++I   +   + + PG+  K+
Sbjct: 61  FGFLETAERDWFRLLSTVQGVGSKVALSVLSVLSAGQISQAIAAGDKAALGRAPGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA----HICSMPSFAINAISALVNLGYGQDQ 176
           A+RI +ELK KA++L  +          + A              +A+SALVNLGYG+ +
Sbjct: 121 AARIASELKDKAVALGGMPAPPPRGAGTDAAGEGPPGGPTGDVLGDAVSALVNLGYGRSE 180

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A  A                +I LALR +
Sbjct: 181 AVGAASRAA--GLGATTVQGVIGLALRDL 207


>gi|291557651|emb|CBL34768.1| Holliday junction DNA helicase subunit RuvA [Eubacterium siraeum
           V10Sc8a]
          Length = 199

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 94/206 (45%), Gaps = 9/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G ++ +  +  +ID  GV Y       TLS L KIG+   L     +R+D + L
Sbjct: 1   MIYSVNGTVDLIEPNLAVIDCGGVGYACRTTANTLSQL-KIGEKAKLLTYLSVREDAVEL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +   F +L SV GVG + A+ +LS +T       +   + K +   PGI  K 
Sbjct: 60  FGFYDAAELNCFRMLISVSGVGPKAALSILSGMTPQAFALCVASGDGKTLTNAPGIGRKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K            S V      + +  +    A+SAL+ LGY   +A +A
Sbjct: 120 AERIVLELKDKVSKQDVAAGVKGSAV----PIVAAPSNTYAEAVSALMVLGYSNGEAASA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +     +     ++IR  L+ ++
Sbjct: 176 LSGLDPSAPSD----ELIRAGLKKLA 197


>gi|83647602|ref|YP_436037.1| Holliday junction DNA helicase RuvA [Hahella chejuensis KCTC 2396]
 gi|123739873|sp|Q2SCL2|RUVA_HAHCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|83635645|gb|ABC31612.1| Holliday junction DNA helicase RuvA [Hahella chejuensis KCTC 2396]
          Length = 204

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 108/205 (52%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +   +  +VL+DV GV Y +  P+  L  L K+G+ C+LF    +R+D   L
Sbjct: 1   MIGRLVGKLAENHPPFVLLDVNGVGYEVEVPLSALGYLPKLGESCSLFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   DR+ F LL  V GVG ++A+ +LS ++  E VE +   N   + ++PG+  K 
Sbjct: 61  YGFIRREDRELFRLLLKVNGVGPKMAVAILSHMSPNEFVECVRGDNLTRLTKMPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ +            +   +  +      S    A +AL+ LGY   +A+ A
Sbjct: 121 AERLLIEMRDRIKDWG--AGDRETATPELLSQAVGGHSHLEEAEAALLALGYKPQEASRA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +V    K+     ++IRLAL+ +
Sbjct: 179 INAV---NKDGMGRDELIRLALKGM 200


>gi|254496522|ref|ZP_05109393.1| holliday junction DNA helicase [Legionella drancourtii LLAP12]
 gi|254354261|gb|EET12925.1| holliday junction DNA helicase [Legionella drancourtii LLAP12]
          Length = 199

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 57/207 (27%), Positives = 97/207 (46%), Gaps = 11/207 (5%)

Query: 1   MIGKIKGNIEGL-YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG + G+I        ++++V GV Y +   + T   L  +     L + T +R+D + 
Sbjct: 1   MIGWLDGHIVDKHQPGKLVLNVNGVGYDVETSLNTFFQLDTLSGSIGLHIHTVVREDALL 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL   +R  F  L  V GVG ++A+ +LS IT  E ++ I  + +  + ++PGI  K
Sbjct: 61  LYGFLDKQERALFRALIKVNGVGPKMAIAILSSITPNEFIQCIKQEKAAFLTKLPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ E++      S          +       ++      A+SAL  LGY   +A  
Sbjct: 121 TAERLVIEMRDSIKQFSE-------PASDLSLKPINLIRGQDEAVSALEALGYKPQEALK 173

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV  +   +       Q+IR AL+ +S
Sbjct: 174 AVNKL---DDGHKSCEQLIREALQILS 197


>gi|297621995|ref|YP_003710132.1| Holliday junction ATP-dependent DNA helicase ruvA [Waddlia
           chondrophila WSU 86-1044]
 gi|297377296|gb|ADI39126.1| Holliday junction ATP-dependent DNA helicase ruvA [Waddlia
           chondrophila WSU 86-1044]
          Length = 202

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 54/203 (26%), Positives = 95/203 (46%), Gaps = 3/203 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +        +++  G+ Y ++ P  T   L +IG    L     +R+    L
Sbjct: 1   MIYFIRGILIQSTPGIAILETGGIGYKVHIPASTYPKLPQIGQEALLHTSMVVREVSQTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  L +V G+G ++A+ ++  ++  E+  +I  Q   +I+++PGI  K 
Sbjct: 61  YGFFYSEERDLFEELTTVSGIGPKIALALIGHLSVEEMHAAIGNQEVAMISKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K        +  +      Q    S      +A+SAL+NLGY Q  A  A
Sbjct: 121 AQRLVIELRDKVQK---GGKYSLPSDFAIQVGTDSRGQKIADAMSALLNLGYNQSTAQKA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           +   L       D +++I  AL+
Sbjct: 178 LKKSLSNFPETIDLTELITDALK 200


>gi|15838502|ref|NP_299190.1| Holliday junction DNA helicase RuvA [Xylella fastidiosa 9a5c]
 gi|20455272|sp|Q9PC77|RUVA_XYLFA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|9106999|gb|AAF84710.1|AE004010_7 holliday junction binding protein, DNA helicase [Xylella fastidiosa
           9a5c]
          Length = 194

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 91/204 (44%), Gaps = 13/204 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV GV Y +  P+ T   L  +G    LF     + D   L
Sbjct: 1   MIGRLRGVLTSKTPPWLVVDVCGVGYELEVPMSTFYELPNVGYEVNLFTHYTQKDDSAAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS+ +R+ F  LQ V G+G ++A+ VLS ++       I   +   +  IPGI  K 
Sbjct: 61  YGFLSESERRLFRHLQRVSGIGTKIALAVLSSVSVDTFAGLIQAGDVNALTVIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +A   +          N               A  AL  LGY   +A   
Sbjct: 121 AERMLVELRDRAADFN----------NGISTSGKLNLDTVSEAALALQQLGYKPAEAARM 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
                 +  ++A     I+ AL+A
Sbjct: 171 ARDAGTESDDVASV---IKKALQA 191


>gi|209517513|ref|ZP_03266353.1| Holliday junction DNA helicase RuvA [Burkholderia sp. H160]
 gi|209502046|gb|EEA02062.1| Holliday junction DNA helicase RuvA [Burkholderia sp. H160]
          Length = 193

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 103/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y +  P+ T   L   G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGVLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPSSGERIVLLTQMIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  + G+GAR+A+ VLS ++  EL +++ +Q++  + ++PGI  K 
Sbjct: 61  YGFGTAQERATFRELLKISGIGARMALAVLSGMSVAELAQTVTMQDAARLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+              ++  +       A   S    A + ++AL+ LGY + +A  A
Sbjct: 121 AERL-----------LLELKGKLGADLGAMAGAASASDHASDILNALLALGYSEKEALAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +V          S+ I+LAL+A+S
Sbjct: 170 IKNV----PAGTGVSEGIKLALKALS 191


>gi|326318908|ref|YP_004236580.1| Holliday junction DNA helicase RuvA [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323375744|gb|ADX48013.1| Holliday junction DNA helicase RuvA [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 190

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 97/206 (47%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +       VL+D  GV Y +  P+ T   L  +G+   L  +  +R+D   L
Sbjct: 1   MIGKLTGTLLEKNPPEVLVDCHGVGYEVQVPMSTFYNLPAVGERVQLLTQFIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +RQ F  L  + GVG R A+ +LS +   +L +++ LQ +  + ++PGI  K 
Sbjct: 61  YGFGSAPERQAFRELIKISGVGPRTALSILSGMGVDDLAQAVSLQEAGRLVKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R              +++          A   +      + + AL+ LGY   +  +A
Sbjct: 121 AER-------------LLLELKGKLGVDIGARPEAANDAQADILQALLALGYNDREGASA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + ++ K        S+ I+LAL+A++
Sbjct: 168 LKALPKDVG----VSEGIKLALKALA 189


>gi|56551051|ref|YP_161890.1| Holliday junction DNA helicase RuvA [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|81355594|sp|Q5NR75|RUVA_ZYMMO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|56542625|gb|AAV88779.1| Holliday junction DNA helicase RuvA [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 213

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 69/209 (33%), Positives = 110/209 (52%), Gaps = 5/209 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +     D  +IDV GV Y++    R L    +I    T+ +ET +R+D I L
Sbjct: 1   MIARLVGFLVEKNSDSAVIDVNGVGYLVQLSGRALDYFSEIEGEITVHIETQIREDSITL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S L+R WF LL SVQGVG + A+ +L+ +T   +  +I   +  +I +  GI  KI
Sbjct: 61  FGFASYLERDWFRLLTSVQGVGGKAALAILTALTCDAISVAISSGDKTMICRANGIGPKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQ-----DMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           A RI+ ELK K  +++           +  +++  A      +F  +A+SAL+NLG+   
Sbjct: 121 AQRIINELKEKPAAIALFSSAKGDHLAVEDISQPAASAHHAGNFMADAVSALLNLGFKPA 180

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRA 204
           +A   V    ++  + A    ++RLALR 
Sbjct: 181 EAQRVVQLASEELGDQATLDSLVRLALRL 209


>gi|329113836|ref|ZP_08242607.1| Holliday junction ATP-dependent DNA helicase RuvA [Acetobacter
           pomorum DM001]
 gi|326696846|gb|EGE48516.1| Holliday junction ATP-dependent DNA helicase RuvA [Acetobacter
           pomorum DM001]
          Length = 203

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 111/206 (53%), Gaps = 4/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +     +IDV GV Y++    RTL+ L    +   L +ET +R+D I L
Sbjct: 1   MIAFLCGLVIQVDLGSCVIDVNGVGYLVAASTRTLAALPNPPEKARLLIETVVREDAILL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   +R+WF LL SVQGVGA+VA+G+LS ++  ELV +++  +   + + PG+  ++
Sbjct: 61  YGFMESAEREWFRLLTSVQGVGAKVALGILSTLSPGELVAALMTSDKASLTRAPGVGGRL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TEL+ KA  +       +       A      S   +A+ AL  LG+ + +A   
Sbjct: 121 AERILTELRDKAGKMPGGGSGGI----TIPAMATPAGSIEADALMALAGLGFRRAEAAPV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  V+     +A    +IR +L+ ++
Sbjct: 177 VRKVMDTHGAVATLDMVIRDSLKDLA 202


>gi|167750454|ref|ZP_02422581.1| hypothetical protein EUBSIR_01430 [Eubacterium siraeum DSM 15702]
 gi|167656605|gb|EDS00735.1| hypothetical protein EUBSIR_01430 [Eubacterium siraeum DSM 15702]
          Length = 199

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 95/206 (46%), Gaps = 9/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G ++ +  +  +ID  GV Y       TLS L KIG+   L     +R+D + L
Sbjct: 1   MIYSVNGTVDLIEPNLAVIDCGGVGYACRTTANTLSQL-KIGEKAKLLTYLSVREDAVEL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +   F +L SV GVG + A+ +LS +T       +   + K +   PGI  K 
Sbjct: 60  FGFYDAAELNCFRMLISVSGVGPKAALSILSGMTPQAFALCVASGDGKTLTNAPGIGRKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K            S V      + +  +    A+SAL+ LGY   +AT+A
Sbjct: 120 AERIVLELKDKVSKQDVAAGVKGSAV----PIVAAPSNTYAEAVSALMVLGYSNGEATSA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +     +     ++IR  L+ ++
Sbjct: 176 LSGLDPSAPSD----ELIRAGLKKLA 197


>gi|302386617|ref|YP_003822439.1| Holliday junction DNA helicase RuvA [Clostridium saccharolyticum
           WM1]
 gi|302197245|gb|ADL04816.1| Holliday junction DNA helicase RuvA [Clostridium saccharolyticum
           WM1]
          Length = 202

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 103/206 (50%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +  ++ED V+I+   V + I+ P+  L  L  IG    L+    +R+D + L
Sbjct: 1   MISFIKGPLAEIFEDTVVIESGNVGFEIHAPLSVLEKLPGIGVEIKLYTYFQVREDAMCL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  D Q F  L SV G+G + A+G+LS +   EL  +II  ++K I++ PG+  K 
Sbjct: 61  FGFLNRQDLQMFQQLISVNGIGPKGALGILSALRPEELRRAIISGDAKAISKAPGVGAKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K      + +   S   +    +         A+ AL  LGY   +A  A
Sbjct: 121 AQRIILDLKDKI----DLAEILPSGFTESADKVILSGGVTEEALEALTALGYSAAEAGRA 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  V  +         +++ +L+ ++
Sbjct: 177 VRQV--EVTESMTVEDVLKASLKHLA 200


>gi|317402225|gb|EFV82814.1| Holliday junction DNA helicase [Achromobacter xylosoxidans C54]
          Length = 190

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 103/205 (50%), Gaps = 17/205 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       V +DV G+ Y I  P+ TL  L + G   TL+    +R+D   L
Sbjct: 1   MIGRITGTLIEKLPPTVCVDVNGLGYDIDVPMSTLYSLPETGARVTLYTHLTVREDAHIL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+GAR A+ VLS ++  +L ++I LQ S  + ++PGI  K 
Sbjct: 61  YGFATAGERSAFRELIKVSGIGARTALSVLSGLSVADLAQAITLQESGRLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++GK  +                A   ++     + ++AL+ LGY + ++ +A
Sbjct: 121 AERLLLEMRGKLGA-------------DIGATAHAVHDNQSDILNALLALGYSEKESLSA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
               LK        S  I+ AL+A+
Sbjct: 168 ----LKTLPEGVGVSDGIKQALKAL 188


>gi|120612876|ref|YP_972554.1| Holliday junction DNA helicase RuvA [Acidovorax citrulli AAC00-1]
 gi|166229622|sp|A1TUZ2|RUVA_ACIAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|120591340|gb|ABM34780.1| Holliday junction DNA helicase RuvA [Acidovorax citrulli AAC00-1]
          Length = 190

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 97/206 (47%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +       VL+D  GV Y +  P+ T   L  +G+   L  +  +R+D   L
Sbjct: 1   MIGKLTGTLLEKNPPEVLVDCHGVGYEVQVPMSTFYNLPAVGERVQLLTQFIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +RQ F  L  + GVG R A+ +LS +   +L +++ LQ +  + ++PGI  K 
Sbjct: 61  YGFGSAPERQAFRELIKISGVGPRTALSILSGMGVDDLAQAVSLQEAGRLVKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R              +++          A   +      + + AL+ LGY   + T A
Sbjct: 121 AER-------------LLLELKGKLGVDIGARPEAANDAQADILQALLALGYNDKEGTAA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + ++ K        S+ I+LAL+A++
Sbjct: 168 LKALPKDVG----VSEGIKLALKALA 189


>gi|258405866|ref|YP_003198608.1| Holliday junction DNA helicase RuvA [Desulfohalobium retbaense DSM
           5692]
 gi|257798093|gb|ACV69030.1| Holliday junction DNA helicase RuvA [Desulfohalobium retbaense DSM
           5692]
          Length = 204

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 62/207 (29%), Positives = 104/207 (50%), Gaps = 8/207 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG +KG++  + +D+ L+    GV Y +     TL  L + G    LFV T +R+D + 
Sbjct: 1   MIGYLKGDVLRIRKDHCLLATAGGVGYDVQATAGTLGRL-EQGSEAELFVHTVVREDALE 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF S  +R  F  L  V  +G + ++ +LS  T  EL      +++  + ++ GI  K
Sbjct: 60  LYGFASLAERDVFAELLGVSKLGPKTSLAILSTFTPEELARIAQTEDTAALTRVSGIGPK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RIM ELK K  +         +     QA   S  S   +A+S L  LGY +++   
Sbjct: 120 SAKRIMWELKDKLTAWEGE-----AVPGTPQATPASGGSVFGDALSGLCGLGYSEEEVRP 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
            +  +L++E ++ D  +IIR  L+ ++
Sbjct: 175 VLSEILEQEPDL-DVGEIIRACLKRLA 200


>gi|239628227|ref|ZP_04671258.1| holliday junction DNA helicase RuvA [Clostridiales bacterium
           1_7_47_FAA]
 gi|239518373|gb|EEQ58239.1| holliday junction DNA helicase RuvA [Clostridiales bacterium
           1_7_47FAA]
          Length = 209

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 62/209 (29%), Positives = 106/209 (50%), Gaps = 5/209 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG + G+ ED ++++   V   I  P      L ++G+  T++    +R+D + L
Sbjct: 1   MISYVKGPLMGIDEDSIIVEAGNVGLAIRVPASLQPELPRLGEEVTIYTYFQVREDAMTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL   DR  F  L  V G+G + A+G+LS +   +L  +I+ ++ K +A+ PGI  K 
Sbjct: 61  YGFLHSQDRDMFRQLIGVNGIGPKGALGILSVLRPDDLRLAIVSEDVKALAKAPGIGNKT 120

Query: 121 ASRIMTELKGKAIS---LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A R++ +LK K      L S+     S V    A +  +   A  A+ ALV LGY   +A
Sbjct: 121 AQRLILDLKDKISMDDVLGSMALSGDSGVGPAAASMAGLAEAAKEAVQALVALGYTNTEA 180

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           + AV  V  +         +++ +L+ +S
Sbjct: 181 SRAVKQV--EVAEGMTSEDVLKASLKHLS 207


>gi|319778457|ref|YP_004129370.1| Holliday junction DNA helicase RuvA [Taylorella equigenitalis MCE9]
 gi|317108481|gb|ADU91227.1| Holliday junction DNA helicase RuvA [Taylorella equigenitalis MCE9]
          Length = 191

 Score =  159 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 109/205 (53%), Gaps = 16/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++KG +   +   V ID+ G+ Y +   + +   L ++G   TLF    +R+D   L
Sbjct: 1   MISRLKGKLIYKFPPTVCIDIGGIAYDVDVSLTSFYELPEVGQEVTLFTHLAVREDAHTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+S+ +R  F  L  V G+G + A+G+LS ++   L  +I  Q+S  + ++PGI  K 
Sbjct: 61  YGFISEDERATFRTLIKVNGIGFKSALGILSGMSPDALYNAIEEQDSSQLERVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ ELKGK   +S++             +  S      + + AL+NLGY + QA  A
Sbjct: 121 AARIILELKGKLPEISTL------------NNTTSNLKNHNDVLIALLNLGYSEKQAKLA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++        D S+ +R+ALR++
Sbjct: 169 ISTL----PKDIDASEGVRIALRSM 189


>gi|85374915|ref|YP_458977.1| Holliday junction DNA helicase RuvA [Erythrobacter litoralis
           HTCC2594]
 gi|123293674|sp|Q2N811|RUVA_ERYLH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|84787998|gb|ABC64180.1| probable holliday junction DNA helicase protein [Erythrobacter
           litoralis HTCC2594]
          Length = 200

 Score =  159 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 119/206 (57%), Gaps = 7/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K+KG ++    D+ +IDV GV Y+++C  ++L+ LG++G+ CT++ +  + ++ +RL
Sbjct: 1   MIAKLKGLLDETGTDWAVIDVSGVGYLVHCSSKSLAALGEVGEACTVYTDLQVSENDMRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF    +R WF LL  VQGVG++VA+ +LS ++  E+  +    ++ ++A+  G+  K+
Sbjct: 61  LGFAEASERDWFRLLTQVQGVGSKVALAILSALSTEEVQTACANGDAAMVARAQGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK KA +L S         N            + +A+SAL NLG+    A  A
Sbjct: 121 AGRIVNELKDKAGALPSAPGGAAMAAN-------PAGGASADAVSALENLGFKPAIAARA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V +   +    A +S++IR+AL+  +
Sbjct: 174 VATAQGELGEGASESELIRVALKRAA 199


>gi|241761371|ref|ZP_04759459.1| Holliday junction DNA helicase RuvA [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241374278|gb|EER63775.1| Holliday junction DNA helicase RuvA [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 213

 Score =  159 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 69/209 (33%), Positives = 110/209 (52%), Gaps = 5/209 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +     D  +IDV GV Y++    R L    +I    T+ +ET +R+D I L
Sbjct: 1   MIARLVGFLVEKNSDSAIIDVNGVGYLVQLSGRALDYFSEIEGEITVHIETQIREDSITL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S L+R WF LL SVQGVG + A+ +L+ +T   +  +I   +  +I +  GI  KI
Sbjct: 61  FGFASYLERDWFRLLTSVQGVGGKAALAILTALTCDAISVAISSGDKTMICRANGIGPKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQ-----DMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           A RI+ ELK K  +++           +  +++  A      +F  +A+SAL+NLG+   
Sbjct: 121 AQRIINELKEKPAAIALFSSAKGDHLAVEDISQPAASAHHAGNFVADAVSALLNLGFKPA 180

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRA 204
           +A   V    ++  + A    ++RLALR 
Sbjct: 181 EAQRVVQLASEELGDQATLDSLVRLALRL 209


>gi|121603423|ref|YP_980752.1| Holliday junction DNA helicase RuvA [Polaromonas naphthalenivorans
           CJ2]
 gi|120592392|gb|ABM35831.1| Holliday junction DNA helicase RuvA [Polaromonas naphthalenivorans
           CJ2]
          Length = 192

 Score =  159 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 17/205 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L+D  GV Y +  P+ T   L  +G+  +LF    +R+D   L
Sbjct: 3   MIGRLTGQLAEKNPPEILVDCHGVGYEVLVPMSTFYNLPGLGEKISLFTHFIVREDAQLL 62

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L  + GVG R+A+ VLS ++  EL +++ LQ +  I ++PGI  K 
Sbjct: 63  YGFGSTAERGAFRQLIKITGVGPRMALSVLSGMSVAELAQAVTLQEAGRIVKVPGIGKKT 122

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R              +++          AH+       ++ + ALV LGY    A  A
Sbjct: 123 AER-------------LLLELKGKLGADIGAHVSVSSEAQLDILQALVALGYSDKDAALA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++          S+ I+LALRA+
Sbjct: 170 LKAL----PPDVGVSEGIKLALRAL 190


>gi|319761299|ref|YP_004125236.1| holliday junction DNA helicase ruva [Alicycliphilus denitrificans
           BC]
 gi|330823173|ref|YP_004386476.1| Holliday junction DNA helicase RuvA [Alicycliphilus denitrificans
           K601]
 gi|317115860|gb|ADU98348.1| Holliday junction DNA helicase RuvA [Alicycliphilus denitrificans
           BC]
 gi|329308545|gb|AEB82960.1| Holliday junction DNA helicase RuvA [Alicycliphilus denitrificans
           K601]
          Length = 190

 Score =  159 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 95/206 (46%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +       VL+D  GV Y +  P+ T   L  +G   +L  +  +R+D   L
Sbjct: 1   MIGKLTGALLEKNPPEVLLDCHGVGYEVLVPMSTFYNLPAVGQPVSLLTQFIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +RQ F  L  V GVG R A+ +LS +   +L +++ LQ +  + ++PGI  K 
Sbjct: 61  YGFATQQERQAFRELIKVSGVGPRTALSILSGLGVADLAQAVSLQEAGRLVKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R              +++              +  +   + + AL+ LGY   +A  A
Sbjct: 121 AER-------------LLLELKGKLGADMGGRPHAASADQADILQALLALGYNDKEAAAA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
               LK        S+ I+LAL++++
Sbjct: 168 ----LKGLPADVGVSEGIKLALKSLA 189


>gi|262368599|ref|ZP_06061928.1| Holliday junction helicase subunit A [Acinetobacter johnsonii
           SH046]
 gi|262316277|gb|EEY97315.1| Holliday junction helicase subunit A [Acinetobacter johnsonii
           SH046]
          Length = 200

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 107/206 (51%), Gaps = 7/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  L    VL++V GV Y I  P+ T   L K G   TL+    +R+D   L
Sbjct: 1   MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLTTFCQLQK-GQKITLWTHLAVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL   ++  F  L  V GVG ++A+G+LS ++   L+ ++  ++   + ++PG+  K 
Sbjct: 60  YGFLHQQEKIIFRTLLKVNGVGPKMALGILSTLSVDMLIHTVEHEDINTLVKVPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+M EL+ +  ++SS      S V + Q       S    A +AL +LGY   +A   
Sbjct: 120 AERLMIELRDRFKAMSSGAAPSNSTVEQIQFT---GNSAVAEAEAALQSLGYKPLEAQKL 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V +    + +  + S IIR AL++++
Sbjct: 177 VSAA---KGDFTEASDIIRAALKSMN 199


>gi|254419140|ref|ZP_05032864.1| Holliday junction DNA helicase RuvA [Brevundimonas sp. BAL3]
 gi|196185317|gb|EDX80293.1| Holliday junction DNA helicase RuvA [Brevundimonas sp. BAL3]
          Length = 205

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 107/206 (51%), Gaps = 4/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ-IR 59
           MIG+++G +  + E   LID  GV Y++ C  RTL  L   GD  T+ V +   +D   R
Sbjct: 1   MIGRLRGVLAEVGEADCLIDCAGVGYVVSCGARTLGRLPAPGDEATVHVHSQWSEDAGPR 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL+  +R+ F  L ++QGVG + A+ VL  +   EL  ++  ++   +A+  G+  K
Sbjct: 61  LYGFLTRDERRAFTTLLAIQGVGPKAALAVLDVLPPGELAGAVAREDKAAVARANGVGPK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           +A RI+TELKGK +     V    +            PS    A+SAL+ LG  +  A  
Sbjct: 121 LALRIVTELKGKPL---GDVSFAPTAPGVHVEIAPPPPSLTGEAVSALLGLGVAEVNARR 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
           AV   L +  + A+   +IR AL+ +
Sbjct: 178 AVDQALIRLGDEAELPAVIRAALQEL 203


>gi|83859806|ref|ZP_00953326.1| Holliday junction DNA helicase motor protein [Oceanicaulis
           alexandrii HTCC2633]
 gi|83852165|gb|EAP90019.1| Holliday junction DNA helicase motor protein [Oceanicaulis
           alexandrii HTCC2633]
          Length = 216

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 80/216 (37%), Positives = 115/216 (53%), Gaps = 11/216 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++ + E+  +IDV GV Y++    RTL  L + G    L +ETH+R+DQ +L
Sbjct: 1   MIGKLKGVVDCVGEEEAVIDVNGVGYLVSAGSRTLGRL-EPGKPVALHIETHVREDQFKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLSD +R WF+ LQSVQGVGA+ A+ +L  I   E+  S IL +     +  G+  K+
Sbjct: 60  FGFLSDSERAWFVRLQSVQGVGAKHALAMLDAIEVGEIESSAILGDPLPFERAKGVGKKL 119

Query: 121 ASRIMTELKGKAISLS----------SVVQQDMSCVNKEQAHICSMPSFAINAISALVNL 170
           A RI TELK KA  L           +             A          +A+SALVNL
Sbjct: 120 AQRIATELKDKAPPLGRSLGAGVAELAAALAPAGAETPTAAPAPKDNVMRESAVSALVNL 179

Query: 171 GYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           GY +  A  A    L++    A +  +I+ AL+ ++
Sbjct: 180 GYSESDARKAAAEALRQLGEDATEGLVIKSALKELA 215


>gi|291530842|emb|CBK96427.1| Holliday junction DNA helicase subunit RuvA [Eubacterium siraeum
           70/3]
          Length = 199

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 94/206 (45%), Gaps = 9/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G ++ +  +  +ID  GV Y       TLS L KIG+   L     +R+D + L
Sbjct: 1   MIYSVNGTVDLIEPNLAVIDCGGVGYACRTTANTLSQL-KIGEKAKLLTYLSVREDAVEL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +   F +L SV GVG + A+ +LS +T       +   + K +   PGI  K 
Sbjct: 60  FGFYDAAELNCFKMLISVSGVGPKAALSILSGMTPQAFALCVASGDGKTLTNAPGIGRKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K            S V      + +  +    A+SAL+ LGY   +A +A
Sbjct: 120 AERIVLELKDKVSKQDVAAGVKGSAV----PIVAAPSNTYAEAVSALMVLGYSNGEAASA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +     +     ++IR  L+ ++
Sbjct: 176 LSGLDPSAPSD----ELIRAGLKKLA 197


>gi|240851225|ref|YP_002972628.1| Holliday junction DNA helicase RuvA [Bartonella grahamii as4aup]
 gi|240268348|gb|ACS51936.1| Holliday junction DNA helicase RuvA [Bartonella grahamii as4aup]
          Length = 204

 Score =  158 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 73/207 (35%), Positives = 126/207 (60%), Gaps = 7/207 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG +E +++D++L+DV GV Y+++   R    L  +G+  +LFVETH+R+D IRL
Sbjct: 1   MIGKLKGTLEHIFDDHILLDVHGVGYVVFVSNRLRPSLPSVGEALSLFVETHVREDAIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++WF LLQ+V GVGA+VA+ +L  ++  EL ++I L +  +I++ PG+  K+
Sbjct: 61  FGFATRAEQEWFCLLQNVPGVGAKVALAILGTLSPDELAQAIALNDVAMISRAPGVGKKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           + RI+ ELK K +     V+       +           A +A+SAL+ LG+ ++ A+ A
Sbjct: 121 SERIVGELKSKTLPFEQAVKTVSVPQREM------TNQPAHDALSALMKLGFEREHASRA 174

Query: 181 VVSVLKK-EKNIADDSQIIRLALRAIS 206
           +   +   E      + +IR +L+ +S
Sbjct: 175 LALAMNALEGETVSSALLIRHSLKLLS 201


>gi|332701178|ref|ZP_08421266.1| Holliday junction ATP-dependent DNA helicase ruvA [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332551327|gb|EGJ48371.1| Holliday junction ATP-dependent DNA helicase ruvA [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 202

 Score =  158 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 51/207 (24%), Positives = 102/207 (49%), Gaps = 10/207 (4%)

Query: 1   MIGKIKGNIEGLYEDY-VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG I+G +    E   +++   GV Y ++ P+  L+ L   G   +   E  +R+D   
Sbjct: 1   MIGYIRGTLLEQTEKSCLVLTAGGVGYELHLPLPALARLPAEGQEVSFHTEQVVREDSQD 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  +R+ F +L S+  +G +  + +LS+    +L + ++ ++   + ++ GI  K
Sbjct: 61  LYGFETSEERRLFHVLLSIPNLGPKKGLAILSQFHPDDLRQIVLHEDIAALTRVSGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
              +I+ ELK K                  +       S   +A++ L NLGY +++A  
Sbjct: 121 TGQQILWELKYKL--------ASADAPAVGRKPAAPGRSVLQDALAGLTNLGYSEEEARP 172

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
            +  + + E ++ D +Q++R AL+AI+
Sbjct: 173 VLHKLFEAEPDL-DVAQLLREALKAIA 198


>gi|49474677|ref|YP_032719.1| Holliday junction DNA helicase motor protein [Bartonella quintana
           str. Toulouse]
 gi|81646802|sp|Q6FYP5|RUVA_BARQU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|49240181|emb|CAF26647.1| Holliday junction DNA helicase ruvA [Bartonella quintana str.
           Toulouse]
          Length = 205

 Score =  158 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 76/207 (36%), Positives = 131/207 (63%), Gaps = 6/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG +E +++D++++DVQGV Y+++   R    L  +G+  +LF+ETH+R++ IRL
Sbjct: 1   MIGKLKGILEHVFDDHIIVDVQGVGYVVFISNRLRPSLPALGESLSLFIETHVREEAIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF++  +++WF LLQ+V GVGA+VA+ +L  ++  EL ++I L +  +I++ PG+  K+
Sbjct: 61  FGFVAKAEQEWFCLLQNVPGVGAKVALAILGTLSPDELAQAIALNDIAMISRAPGVGKKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           + RI++ELK KA+        D +     Q H+        +A+SALV LG+ +DQA  A
Sbjct: 121 SERIVSELKSKALPF-----NDNALHFTPQPHLEVTHQPTNDALSALVKLGFERDQAARA 175

Query: 181 VVSVLKK-EKNIADDSQIIRLALRAIS 206
           +   +   E      + +IR +L+ +S
Sbjct: 176 LALAMNALEGETVSSALLIRHSLKLLS 202


>gi|194366898|ref|YP_002029508.1| Holliday junction DNA helicase RuvA [Stenotrophomonas maltophilia
           R551-3]
 gi|229560131|sp|B4ST34|RUVA_STRM5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|194349702|gb|ACF52825.1| Holliday junction DNA helicase RuvA [Stenotrophomonas maltophilia
           R551-3]
          Length = 197

 Score =  158 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 55/204 (26%), Positives = 97/204 (47%), Gaps = 10/204 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV GV Y +  P+ T   L ++G   TL+     ++D + L
Sbjct: 1   MIGRLRGIVAYKAPPWLVVDVNGVGYELEAPMSTFYDLPELGREVTLYTHYSQKEDSVSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + +R+ F  +Q V G+GA++A+ VLS +T  E    +   +   + +IPGI  K 
Sbjct: 61  YGFLREGERRLFRDVQKVSGIGAKIALAVLSGVTVEEFARMVQAGDITALTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +A    +                 +      +A  AL  LGY   +A   
Sbjct: 121 AERMVLELRDRAAQFGAGGALPTGSG-------PAPADPLSDATVALQQLGYKPAEAARM 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
                 +   +A     IR AL++
Sbjct: 174 AREAFNEGDEVAIV---IRKALQS 194


>gi|189462206|ref|ZP_03010991.1| hypothetical protein BACCOP_02888 [Bacteroides coprocola DSM 17136]
 gi|189431109|gb|EDV00094.1| hypothetical protein BACCOP_02888 [Bacteroides coprocola DSM 17136]
          Length = 198

 Score =  158 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +  +     +I+  G+ Y I   + T S + +      L++   +R+D   L
Sbjct: 1   MIEYIKGELTEITPAMAVIECNGLGYGINVSLNTYSAI-QGKKEVKLYIYESIREDAYIL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F+LL SV G+G   A  +LS +T +EL   I   N K++  + GI +K 
Sbjct: 60  YGFATKQERELFLLLISVSGIGGNTARMILSALTPSELCNVISSGNDKLLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K  +         + ++     I +       AI+AL  LG+ Q  +   
Sbjct: 120 AQRIIVDLKDKISTTDIGTSTTSAPIS-----ITANNEIYEEAIAALTMLGFAQAPSQKV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++LK+E + A   ++I+LAL+ +
Sbjct: 175 VAAILKEEPDAA-VEKVIKLALKRL 198


>gi|255533713|ref|YP_003094085.1| Holliday junction DNA helicase RuvA [Pedobacter heparinus DSM 2366]
 gi|255346697|gb|ACU06023.1| Holliday junction DNA helicase RuvA [Pedobacter heparinus DSM 2366]
          Length = 194

 Score =  158 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +      Y++++  GV Y +   + T S L    + C ++   H+++D   L
Sbjct: 1   MFEYIDGKLAFKCPTYIVVEAGGVGYHLNISLNTYSSLANT-ERCKVYTWLHVKEDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + +R+ F+ L SV G+G      +LS IT  E+  +I+  +  +I +I GI  K 
Sbjct: 60  YGFADEGERRLFLHLISVSGIGPNTGRMMLSSITPVEIQTAIVNADLALIQRIKGIGAKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K     S                    +    A+SAL+ LG+ +  +  A
Sbjct: 120 AQRLVLELQDKLKKEGSGS----------LIAAPLNNTVREEALSALMMLGFAKPASEKA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + + +K         Q+I++AL+ +
Sbjct: 170 IDNAVKNGGQDLSVEQMIKIALKNL 194


>gi|266625272|ref|ZP_06118207.1| holliday junction DNA helicase RuvA [Clostridium hathewayi DSM
           13479]
 gi|288862827|gb|EFC95125.1| holliday junction DNA helicase RuvA [Clostridium hathewayi DSM
           13479]
          Length = 202

 Score =  158 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 106/206 (51%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +  ++ED V+I+   +   I+ P+  L  L  IG    L+    +R+D + L
Sbjct: 1   MISYVKGPLVDIFEDTVVIEAGYIGLEIHVPLSVLDRLPGIGMETVLYTYFQVREDGMCL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  D Q F  L SV G+G + A+GVLS +T  EL  +II  ++K I++ PGI +K 
Sbjct: 61  YGFLNRQDLQMFRQLISVSGIGPKGALGVLSAMTPDELRLAIITGDAKAISRAPGIGVKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K      +     +    E+    S    A  A+ ALV LGY   +A  A
Sbjct: 121 AQRVILDLKDKI----DMADVLPAQFAAEEEPGISAGGVAKEAVEALVALGYSTAEANRA 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  V  +         +++ +L+ ++
Sbjct: 177 VGKV--EVTGDMTSEDVLKASLKHLA 200


>gi|187735908|ref|YP_001878020.1| Holliday junction DNA helicase RuvA [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187425960|gb|ACD05239.1| Holliday junction DNA helicase RuvA [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 220

 Score =  158 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 59/208 (28%), Positives = 103/208 (49%), Gaps = 13/208 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI  ++G +   Y   +++DV GV Y +  P+ T   L    G   TL    H+R++   
Sbjct: 24  MIAFLRGTVAESYPQRLILDVHGVGYEVIVPLSTFDRLNPLPGRELTLKTYLHVRENMQV 83

Query: 60  LFGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
           L+GF +D +R  F+LL   V G+G   A+ +L  ++  +  ++++  +   IA+  G+  
Sbjct: 84  LYGFATDAERDIFLLLIERVSGIGPATAIAILGSLSVEQFKQAVVGGDVSGIARAKGVGK 143

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K A RI+ ELK K    ++   Q                  A +A  AL+ LG+ Q ++ 
Sbjct: 144 KTAERIVLELKDKVGLAATWEAQAQGAT----------SQAAGDAELALIALGFKQVESR 193

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
            A+ + LK   + AD  ++IR ALR+++
Sbjct: 194 KAIAAHLKDHPD-ADVDELIRAALRSMN 220


>gi|110679369|ref|YP_682376.1| Holliday junction DNA helicase RuvA [Roseobacter denitrificans OCh
           114]
 gi|122972806|sp|Q168A3|RUVA_ROSDO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|109455485|gb|ABG31690.1| Holliday junction DNA helicase RuvA, putative [Roseobacter
           denitrificans OCh 114]
          Length = 218

 Score =  158 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 71/216 (32%), Positives = 117/216 (54%), Gaps = 11/216 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGKI G +E    D+VLIDV+GV Y+++C  RTL+ L  +G+   L+ +  +R+D ++L
Sbjct: 1   MIGKITGRLEYRASDHVLIDVRGVGYLVFCSERTLAALPGVGEVVALYTDLLVREDVMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++W  LL SVQGVGA+ ++ +L  + A  +  +I L +   +    G+  KI
Sbjct: 61  FGFTTLTEKEWHRLLTSVQGVGAKASLAILGTLGADGVSRAIALGDWNAVKAAKGVGPKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQ----------AHICSMPSFAINAISALVNL 170
           A R++ +LK KA S+  +     +   +            + +   PS    A+SAL NL
Sbjct: 121 AQRVVLDLKDKAPSVMGMSDTQATVAAQSSDAVIETRAAPSPVVQNPSAQAEALSALSNL 180

Query: 171 GYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           GY    A  AV     +  + A+   +IR AL+ ++
Sbjct: 181 GYAPGDAAAAVAQAAGELPD-AETPDLIRAALKRLA 215


>gi|71275803|ref|ZP_00652087.1| DNA recombination protein, RuvA [Xylella fastidiosa Dixon]
 gi|71900402|ref|ZP_00682535.1| DNA recombination protein, RuvA [Xylella fastidiosa Ann-1]
 gi|170730217|ref|YP_001775650.1| Holliday junction DNA helicase RuvA [Xylella fastidiosa M12]
 gi|229560142|sp|B0U2E1|RUVA_XYLFM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|71163381|gb|EAO13099.1| DNA recombination protein, RuvA [Xylella fastidiosa Dixon]
 gi|71729834|gb|EAO31932.1| DNA recombination protein, RuvA [Xylella fastidiosa Ann-1]
 gi|167965010|gb|ACA12020.1| holliday junction binding protein, DNA helicase [Xylella fastidiosa
           M12]
          Length = 194

 Score =  158 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 91/204 (44%), Gaps = 13/204 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV GV Y +  P+ T   L  +G    LF     + D   L
Sbjct: 1   MIGRLRGVLTSKTPPWLVVDVCGVGYELEVPMSTFCELPDVGYEVNLFTHYTQKDDSAAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS+ +R+ F  LQ V G+G ++A+ VLS ++       I   +   +  IPGI  K 
Sbjct: 61  YGFLSESERRLFRHLQRVSGIGTKIALAVLSSVSVDTFAGLIQAGDVNALTVIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +A   +          N               A  AL  LGY   +A   
Sbjct: 121 AERMLVELRDRAADFN----------NGISTSGKLNLDTVSEAALALQQLGYKPAEAARM 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
                 +  ++A     I+ AL+A
Sbjct: 171 ARDAGTESDDVATV---IKKALQA 191


>gi|107021766|ref|YP_620093.1| Holliday junction DNA helicase RuvA [Burkholderia cenocepacia AU
           1054]
 gi|116688712|ref|YP_834335.1| Holliday junction DNA helicase motor protein [Burkholderia
           cenocepacia HI2424]
 gi|161525864|ref|YP_001580876.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans ATCC
           17616]
 gi|170732009|ref|YP_001763956.1| Holliday junction DNA helicase RuvA [Burkholderia cenocepacia
           MC0-3]
 gi|189349415|ref|YP_001945043.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans ATCC
           17616]
 gi|221202296|ref|ZP_03575330.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans
           CGD2M]
 gi|221209110|ref|ZP_03582104.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans CGD2]
 gi|221214501|ref|ZP_03587472.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans CGD1]
 gi|123371880|sp|Q1BZ35|RUVA_BURCA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230524|sp|A0K4L5|RUVA_BURCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560009|sp|B1JVV4|RUVA_BURCC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560011|sp|A9AH72|RUVA_BURM1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|105891955|gb|ABF75120.1| Holliday junction DNA helicase RuvA [Burkholderia cenocepacia AU
           1054]
 gi|116646801|gb|ABK07442.1| Holliday junction DNA helicase RuvA [Burkholderia cenocepacia
           HI2424]
 gi|160343293|gb|ABX16379.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans ATCC
           17616]
 gi|169815251|gb|ACA89834.1| Holliday junction DNA helicase RuvA [Burkholderia cenocepacia
           MC0-3]
 gi|189333437|dbj|BAG42507.1| holliday junction DNA helicase [Burkholderia multivorans ATCC
           17616]
 gi|221165758|gb|EED98233.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans CGD1]
 gi|221171014|gb|EEE03467.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans CGD2]
 gi|221177870|gb|EEE10283.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans
           CGD2M]
          Length = 193

 Score =  158 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 104/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +      ++L+D  GV Y I  P+ T   L + G+   L  +  +R+D   L
Sbjct: 1   MIGRIAGILLEKNPPHLLVDCNGVGYEIDVPMSTFYNLPQTGERVVLLTQQIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  + G+GAR+A+ VLS ++  EL +++ +Q++  + ++PGI  K 
Sbjct: 61  YGFLTPQERTTFRELLKITGIGARMALAVLSGMSVQELAQAVTMQDAARLTRLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+              ++  +       A   S    A + ++AL+ LGY + +   A
Sbjct: 121 AERL-----------LLELKGKLGADLGALAGAASASDHATDILNALLALGYSEKEGLAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +V          S+ I+LAL+A+S
Sbjct: 170 IKNV----PAGTGVSEGIKLALKALS 191


>gi|258543669|ref|YP_003189102.1| Holliday junction DNA helicase RuvA [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634747|dbj|BAI00723.1| Holliday junction resolvase RusA [Acetobacter pasteurianus IFO
           3283-01]
 gi|256637803|dbj|BAI03772.1| Holliday junction resolvase RusA [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640857|dbj|BAI06819.1| Holliday junction resolvase RusA [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643912|dbj|BAI09867.1| Holliday junction resolvase RusA [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646967|dbj|BAI12915.1| Holliday junction resolvase RusA [Acetobacter pasteurianus IFO
           3283-26]
 gi|256650020|dbj|BAI15961.1| Holliday junction resolvase RusA [Acetobacter pasteurianus IFO
           3283-32]
 gi|256653010|dbj|BAI18944.1| Holliday junction resolvase RusA [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256656064|dbj|BAI21991.1| Holliday junction resolvase RusA [Acetobacter pasteurianus IFO
           3283-12]
          Length = 202

 Score =  158 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 109/206 (52%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +     +IDV GV Y++    RTL+ L    +   L +ET +R+D I L
Sbjct: 1   MIAFLCGLVIQVDLGSCVIDVNGVGYLVAASTRTLAALPNPPEKARLLIETVVREDAILL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   +R+WF LL SVQGVGA+VA+G+LS ++  ELV +++  +   + + PG+  ++
Sbjct: 61  YGFMESAEREWFRLLTSVQGVGAKVALGILSTLSPGELVAALMTSDKASLTRAPGVGGRL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TEL+ KA  +               A      S   +A+ AL  LG+ + +A   
Sbjct: 121 AERILTELRDKAGKMPGGG-----GGITIPAMATPAGSIEADALMALAGLGFRRAEAAPV 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  V+      A    +IR +L+ ++
Sbjct: 176 VRKVMDAHGAAATLDLVIRDSLKDLA 201


>gi|237748980|ref|ZP_04579460.1| RuvA protein [Oxalobacter formigenes OXCC13]
 gi|229380342|gb|EEO30433.1| RuvA protein [Oxalobacter formigenes OXCC13]
          Length = 193

 Score =  158 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 98/206 (47%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I+G +       +L+D QGV Y I  P+ T   L  +G+  TLF    +R+D   L
Sbjct: 1   MIGRIQGILLQKNPPQLLVDCQGVGYEIDVPMSTFYNLPAVGEKVTLFTHLAIREDAHVL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L  + GVGAR A+ +LS ++  ++ +++ LQ++  +  IPGI  K 
Sbjct: 61  YGFGSLDERALFRQLIRISGVGARTALALLSGLSVNDMSQAVALQDASRLTSIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+              ++  +                  +  +AL+ LGY + +   A
Sbjct: 121 AERL-----------LLELKGKLETGALSAISSSVQNDAMADIQNALLALGYSEKETILA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  V     N    S  I++AL+A+S
Sbjct: 170 IKQV----PNDCSVSDGIKMALKALS 191


>gi|197121426|ref|YP_002133377.1| Holliday junction DNA helicase RuvA [Anaeromyxobacter sp. K]
 gi|229470528|sp|B4UFY0|RUVA_ANASK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|196171275|gb|ACG72248.1| Holliday junction DNA helicase RuvA [Anaeromyxobacter sp. K]
          Length = 197

 Score =  158 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G I    +D+ ++DV GV Y+++    +L+ L   G+   L V TH+R+D + L
Sbjct: 1   MIARLAGRIAEKRDDHAIVDVGGVGYLVHLSQLSLASLPPPGEPAALRVYTHVREDALDL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ +   F  L  V+GVG R A  +LS I A EL +++   +   + ++ GI  K 
Sbjct: 61  YGFATEDEEAVFRALIDVKGVGPRAAQNILSGIEARELAQAVAQGDVARLTKVQGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K ++L+              A   +         +AL+NLGY   QA   
Sbjct: 121 AERLVLELKEKLVALARAAG---------PARAGAEADVLEQLRTALLNLGYRPPQAEG- 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V   L+          ++R AL+ +
Sbjct: 171 VAEALRDSAEGRPLDDLLREALKRL 195


>gi|94971750|ref|YP_593798.1| Holliday junction DNA helicase RuvA [Candidatus Koribacter
           versatilis Ellin345]
 gi|94553800|gb|ABF43724.1| Holliday junction DNA helicase subunit RuvA [Candidatus Koribacter
           versatilis Ellin345]
          Length = 202

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 67/205 (32%), Positives = 105/205 (51%), Gaps = 14/205 (6%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           I  ++G I     + V++D  GV Y +   + T S LG  G   +L+V TH+R+D + L+
Sbjct: 11  IAHLRGKILAKRPNQVIVDCGGVGYDVTISVPTFSELGADGTEASLYVHTHVREDALALY 70

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF+   ++Q F  L +V G+G ++A+ VLS + A E+V +I   +   + +IPG+  K A
Sbjct: 71  GFVHPQEKQLFERLLTVSGIGPKLAITVLS-MAANEVVGAIRGNDVTRLTKIPGVGKKTA 129

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
            R++ ELK K  +  +  +            I        + ISALVNLGY +  A  AV
Sbjct: 130 ERMILELKDKLETFGATPE------------IPKASQAEEDVISALVNLGYQRAAAEQAV 177

Query: 182 VSVLKKEKNIADDSQIIRLALRAIS 206
              LK   + A   Q+ R AL  +S
Sbjct: 178 TRALKTGSSSA-FDQLFRGALGMLS 201


>gi|319407733|emb|CBI81380.1| holliday junction DNA helicase RuvA [Bartonella sp. 1-1C]
          Length = 215

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 78/207 (37%), Positives = 130/207 (62%), Gaps = 1/207 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG +E ++ D++++DVQGV YII+ P R  S L  IG+  +LF+ETH+R++ IRL
Sbjct: 1   MIGKLKGILEHIFSDHIILDVQGVGYIIFIPNRLHSSLPAIGESLSLFIETHVREEAIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++WF LLQ+V GVGA+VA+ +L  ++  EL ++I L +   I++ PG+  K+
Sbjct: 61  FGFATKSEQEWFCLLQNVPGVGAKVALAILGSLSVNELTQAITLNDIATISRAPGVGKKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           + RI++ELK K +  S    ++ +  +              +A+ AL+ LG+  D+ATTA
Sbjct: 121 SERIVSELKNKTLQFSKEDNKNPAFSSSLTFSSEEEYQPTNDALLALIKLGFDHDKATTA 180

Query: 181 VVSVLKKEKNIADDSQII-RLALRAIS 206
           + S +   K     S ++ R +L+ +S
Sbjct: 181 LASAVSALKGETVSSALLVRHSLKLLS 207


>gi|164687538|ref|ZP_02211566.1| hypothetical protein CLOBAR_01179 [Clostridium bartlettii DSM
           16795]
 gi|164603312|gb|EDQ96777.1| hypothetical protein CLOBAR_01179 [Clostridium bartlettii DSM
           16795]
          Length = 197

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 95/205 (46%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +E +Y D ++++  G+ Y I     T   + K G    +F +  +R+D + L
Sbjct: 1   MYSYIKGTVEEIYLDRIVLENNGIGYEINVSSFTAQSVQK-GKDAKIFTKLIVREDDMSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF S  + + F LL SV  +G +V +G+LS  T  +L   I+ ++   +++ PG+  K 
Sbjct: 60  CGFASRKELEMFKLLTSVSKIGPKVGLGILSCATPPQLSAYILSEDIAKLSKCPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K    S+  +  +                   A+ AL+ LGY   +A  A
Sbjct: 120 AERIILELKDKVDKESAEFEATLFNQAPTGLE-------LDEAVEALLALGYSNVEAKEA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V    K   +      +I+ AL  +
Sbjct: 173 VQKFKK---DGLKTEDLIKKALTYL 194


>gi|262375568|ref|ZP_06068801.1| Holliday junction DNA helicase RuvA [Acinetobacter lwoffii SH145]
 gi|262309822|gb|EEY90952.1| Holliday junction DNA helicase RuvA [Acinetobacter lwoffii SH145]
          Length = 200

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 106/206 (51%), Gaps = 7/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  L    VL++V GV Y I  P+ T   L K G   TL+    +R+D   L
Sbjct: 1   MIGCLIGEVLALEAPTVLLNVNGVGYEIDTPLTTFCQLQK-GQKITLWTHLAVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  ++  F  L  V GVG ++A+G+LS ++   L+ ++  ++   + ++PG+  K 
Sbjct: 60  YGFINAQEKTIFRTLLKVNGVGPKMALGILSTLSVEMLIHTVEHEDINTLVKVPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+M EL+ +  +++S      S   + Q       S    A +AL +LGY   +A   
Sbjct: 120 AERLMIELRDRFKAMASGAAPSNSTAPQIQFM---GNSAVAEAEAALQSLGYKPVEAQKL 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V +    +    + S IIR AL++++
Sbjct: 177 VNAA---KGEFTEASDIIRAALKSMN 199


>gi|220916123|ref|YP_002491427.1| Holliday junction DNA helicase RuvA [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|254766937|sp|B8JF04|RUVA_ANAD2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|219953977|gb|ACL64361.1| Holliday junction DNA helicase RuvA [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 197

 Score =  157 bits (398), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G I    +D+ ++DV GV Y+++    +L+ L   G+   L V TH+R+D + L
Sbjct: 1   MIARLAGRIAEKRDDHAIVDVGGVGYLVHLSQLSLASLPPPGEPAALRVYTHVREDALDL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ +   F  L  V+GVG R A  +LS I A EL +++   +   + ++ GI  K 
Sbjct: 61  YGFATEDEEAVFRALIDVKGVGPRAAQNILSGIEARELAQAVAQGDVARLTKVQGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K ++L+              A   +         +AL+NLGY   QA   
Sbjct: 121 AERLVLELKEKLVALARAAG---------PARAGAEADVLEQLRTALLNLGYRPPQAEG- 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V   L+         +++R AL+ +
Sbjct: 171 VAEALRDSAEGRPLDELLREALKLL 195


>gi|258545752|ref|ZP_05705986.1| Holliday junction DNA helicase RuvA [Cardiobacterium hominis ATCC
           15826]
 gi|258518997|gb|EEV87856.1| Holliday junction DNA helicase RuvA [Cardiobacterium hominis ATCC
           15826]
          Length = 197

 Score =  157 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 94/204 (46%), Gaps = 11/204 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +       ++++  GV Y +  P+  L  + + G    LFV   +R D   L
Sbjct: 1   MIAYLRGTVLVKQAGQIILETGGVGYELAVPLSVLERVHE-GQEAALFVHHAVRDDGHYL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +   R WF  L  V G+G ++A+ +LS      L +++  Q+S  + ++PG+  K 
Sbjct: 60  YGFHTLEQRSWFRELIRVSGIGPKIALLILSGFDVEMLAQTVRAQDSAALVKLPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL  +   L        +     Q  I    S  ++A  ALV LGY   +A   
Sbjct: 120 AERLLVELNDRVGRL-------PTAGGAGQGSILRPASARLDAEEALVALGYKPAEAAQL 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           +  V     + AD   +IR AL+ 
Sbjct: 173 IERV---GDDDADTDTLIRRALQL 193


>gi|295399354|ref|ZP_06809336.1| Holliday junction DNA helicase RuvA [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312110086|ref|YP_003988402.1| Holliday junction DNA helicase RuvA [Geobacillus sp. Y4.1MC1]
 gi|294978820|gb|EFG54416.1| Holliday junction DNA helicase RuvA [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311215187|gb|ADP73791.1| Holliday junction DNA helicase RuvA [Geobacillus sp. Y4.1MC1]
          Length = 199

 Score =  157 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 101/205 (49%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G ++ +  +Y++ID  G+ Y I+ P    S         T++   ++R+D + L
Sbjct: 1   MIEFIRGYVDYVCPEYIVIDNNGIGYQIFTP-NPFSFQESRDTIVTVYTYQYVREDMLAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+G +  + +L+     +LVE+I  +N   + + PG+  K 
Sbjct: 60  YGFRTREERALFAKLLQVSGIGPKGGLAILAAGRPEQLVEAIEQENETFLCKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK  ++++    D+           S  S    AI AL  LGY + +    
Sbjct: 120 ARQMILDLKGKLTAVAARTYPDLF----HPEEEPSHLSALEEAIEALKALGYAEREIQKV 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V S++K+        Q ++ AL+ +
Sbjct: 176 VPSLMKEN---LSTDQYVKRALQQL 197


>gi|217976203|ref|YP_002360350.1| Holliday junction DNA helicase RuvA [Methylocella silvestris BL2]
 gi|254767375|sp|B8EJI5|RUVA_METSB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|217501579|gb|ACK48988.1| Holliday junction DNA helicase RuvA [Methylocella silvestris BL2]
          Length = 209

 Score =  157 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 79/206 (38%), Positives = 122/206 (59%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++   EDYV++DV GV Y+++C  RTL  L   G    L ++T MR+D I+L
Sbjct: 1   MIGKLKGLVDSQGEDYVILDVNGVGYVVHCSSRTLQNLPPQGQATALAIDTQMREDSIKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +R+WF LLQSVQGVGA+VA+ +   +   E+V +I  Q+    A+  G+  K+
Sbjct: 61  YGFASETEREWFRLLQSVQGVGAKVALAIQGVLRPGEIVTAIAAQDRAAFARASGVGAKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ ELK KA +L + +       ++             +AIS LVNLG+G+ QA  A
Sbjct: 121 AARILAELKDKAPALGASLHTLAGAGSEGAGVEAPASGAVSDAISVLVNLGFGRSQAAVA 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V +  K   + A    + + AL+ ++
Sbjct: 181 VAASSKALGSGAGAGDLAKRALQELA 206


>gi|189345865|ref|YP_001942394.1| Holliday junction DNA helicase RuvA [Chlorobium limicola DSM 245]
 gi|229560015|sp|B3EFD2|RUVA_CHLL2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189340012|gb|ACD89415.1| Holliday junction DNA helicase RuvA [Chlorobium limicola DSM 245]
          Length = 203

 Score =  157 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 51/202 (25%), Positives = 99/202 (49%), Gaps = 5/202 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G +     D  ++DV G+ Y       T   L   G+   L+    +++D   L
Sbjct: 1   MFAYFRGRLTSAMPDEAVVDVSGIGYRFLVSAFTYRQLPPPGEDVLLYAHLSVKEDAFLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +RQ F LL    GVG ++A+ VLS +   E+ E+I+    + +  I G+  K 
Sbjct: 61  YGFSSESERQLFRLLLLTTGVGPKLALAVLSGLQVHEVHEAIMANAPERLYGISGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ EL+ + + +S    + ++  +     +        +A++AL+ LG+ +  A  A
Sbjct: 121 AARIILELRDRILKMSPDGGKTIASGSGGNLAL----QIKDDALNALITLGFSKPAAQKA 176

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           V  +L+   ++    ++++ AL
Sbjct: 177 VTGILEGNPSL-SVEEVVKSAL 197


>gi|225181939|ref|ZP_03735373.1| Holliday junction DNA helicase RuvA [Dethiobacter alkaliphilus AHT
           1]
 gi|225167379|gb|EEG76196.1| Holliday junction DNA helicase RuvA [Dethiobacter alkaliphilus AHT
           1]
          Length = 200

 Score =  157 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 106/205 (51%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I+G +    +D V++D QG+ + I  P   LS L  + +   LF    +R+D + L
Sbjct: 1   MFNYIRGTLVQKGKDTVVLDNQGIGWQISVPSTVLSGLHSLDEEVKLFTYLAVREDDLHL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  D   F LL SV G+G + A+G+LS ++A E   +++ +N K + ++PG+  K 
Sbjct: 61  YGFLTADDLSLFKLLISVSGIGPKAALGILSSLSAAEFHLAVMHENVKALTRVPGVGPKS 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K  +L +      +             S   +A+ ALV LGY   +A  A
Sbjct: 121 AKRLIVELKEKVAALGTPQTVSAT------PQAGGTTSAYHDALEALVALGYNGSEAQAA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++  ++ +     ++I+ AL  +
Sbjct: 175 LQTI--EDADRLSTEELIKKALAHL 197


>gi|193213411|ref|YP_001999364.1| Holliday junction DNA helicase RuvA [Chlorobaculum parvum NCIB
           8327]
 gi|229560016|sp|B3QQG1|RUVA_CHLP8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|193086888|gb|ACF12164.1| Holliday junction DNA helicase RuvA [Chlorobaculum parvum NCIB
           8327]
          Length = 204

 Score =  157 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 103/205 (50%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G +     +  +++V G+ Y ++    T S L   G    L+   H+R+D  +L
Sbjct: 1   MFAFLRGELVTASREEAVVEVSGIGYRLHISSGTSSRLPVPGSPVFLYTHYHVREDLQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL + + Q F LL S+ GVG ++A+ VLS ++  E+ E+I+    + +  I G+  K 
Sbjct: 61  FGFLDEEELQLFRLLLSISGVGPKLAIAVLSGLSVGEIQEAIVSNRPETLFGISGVGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ EL+ K + +           +     + S      +A++AL  LG+ +  A  A
Sbjct: 121 AARIILELRDKILKIQPTSSAKAGAPS----AVLSATQLIDDAVAALTTLGFPKASAQKA 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  VL+    +    +++R +L A+
Sbjct: 177 VSKVLETTPGL-SVEELVRTSLAAM 200


>gi|84516659|ref|ZP_01004018.1| Holliday junction DNA helicase motor protein [Loktanella
           vestfoldensis SKA53]
 gi|84509695|gb|EAQ06153.1| Holliday junction DNA helicase motor protein [Loktanella
           vestfoldensis SKA53]
          Length = 218

 Score =  157 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 71/216 (32%), Positives = 118/216 (54%), Gaps = 11/216 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGKI G +E    D+VLIDV+GV Y++Y   R ++ L + G+   L+ +  +R+D ++L
Sbjct: 1   MIGKIAGRLEYRSTDHVLIDVRGVGYLVYVSDRVMASLPRNGEAVALYTDLLVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++W  LL SVQG+GA+ ++ +L  + A  +  +I L +   +A+  G+  K 
Sbjct: 61  FGFTTLVEKEWHRLLMSVQGIGAKASLAILGALGADGVSRAIALGDWNAVAKARGVGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP----------SFAINAISALVNL 170
           A R++ ELK KA  + ++     +    E       P          +   +A+SAL NL
Sbjct: 121 AQRVIIELKDKAPGVMALGAGLSAATGDEVIEADPAPAPRATPQPASTAQADAMSALANL 180

Query: 171 GYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           GY    A +AVV  L  +   AD   +IR AL+ ++
Sbjct: 181 GYAPGDAASAVVQALGADPQ-ADAGVLIRAALQLLA 215


>gi|218133570|ref|ZP_03462374.1| hypothetical protein BACPEC_01437 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990945|gb|EEC56951.1| hypothetical protein BACPEC_01437 [Bacteroides pectinophilus ATCC
           43243]
          Length = 203

 Score =  157 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 103/207 (49%), Gaps = 7/207 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  IKG +  + E  ++++   G+   I  P   +  +   G    +    ++++D + 
Sbjct: 1   MISYIKGELTEVSETSIVVETSSGIGMNIIVPQTVIDKMPSCGSMVKIHTYLNVKEDSMT 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF++  D   F LL +V G+G + A+ +LS IT  +L  +++  + K I++ PGI  K
Sbjct: 61  LYGFINREDVDIFRLLITVNGIGPKGALAILSTITPDDLRFAVLSDDVKAISRAPGIGAK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ ELK K      + +     ++ E+           + + ALV LGYG+ +A  
Sbjct: 121 TAQRMIIELKDKLK----LEEAFEIRLSHEEVDDLPAGDARNDTVQALVALGYGRSEAAR 176

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV  V     +  D  Q+I+ AL+ ++
Sbjct: 177 AVNMV--DGADSMDSEQLIKAALKKLA 201


>gi|255281765|ref|ZP_05346320.1| holliday junction DNA helicase RuvA [Bryantella formatexigens DSM
           14469]
 gi|255267832|gb|EET61037.1| holliday junction DNA helicase RuvA [Bryantella formatexigens DSM
           14469]
          Length = 202

 Score =  157 bits (397), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 99/206 (48%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +    E+  +I+  G+ + +Y   R    L + G    L+    +R+D I+L
Sbjct: 1   MIAFIKGTLVEAAENVAVIENNGIGFNVYITGRDAGQLVRGGMEVLLYTYMDVREDAIQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  D + F +L  V G+G + A GVL+ I+A EL  +++  + K I+  PGI  K 
Sbjct: 61  YGFLSKDDLEIFRMLLKVNGIGPKAAQGVLTAISANELRFAVLADDIKAISAAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK K    S     +        A   +       A+ ALV LGY    A  A
Sbjct: 121 AQKLILELKDK---FSLQDTFEQKLAENTAAAAAAPNETQSEAVQALVALGYAGSDALKA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V +V   E        I+R AL+ IS
Sbjct: 178 VKAVHATE--DMSTEDILRAALKHIS 201


>gi|218288865|ref|ZP_03493116.1| Holliday junction DNA helicase RuvA [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240954|gb|EED08131.1| Holliday junction DNA helicase RuvA [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 208

 Score =  157 bits (397), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 107/205 (52%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  L   YV +DV+ V Y ++   RT + L  +GD   L+   H+R+D   L
Sbjct: 1   MIAFLRGRVAFLGPGYVDLDVRDVGYRVHVCDRTQAAL-NLGDTAFLYTHHHVREDGWAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L +V G+G ++A+ V+      E+V +I+ ++ + ++++PGI  K+
Sbjct: 60  YGFETSEERALFERLVAVSGIGPKLALQVIGAAGVGEIVAAILAEDVESLSRLPGIGRKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASR++ EL+ K   L+    +  S          S  S A +A+SALV LGY   +A  A
Sbjct: 120 ASRLVVELREKLDDLAPSALRPPSSA------PGSQGSTAEDAVSALVALGYRPREAEEA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +V +           I+ AL  +
Sbjct: 174 VSAVGR---GRQSVEDTIKAALTYL 195


>gi|163869137|ref|YP_001610376.1| Holliday junction DNA helicase RuvA [Bartonella tribocorum CIP
           105476]
 gi|189045742|sp|A9IYK7|RUVA_BART1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|161018823|emb|CAK02381.1| holliday junction DNA helicase RuvA [Bartonella tribocorum CIP
           105476]
          Length = 204

 Score =  157 bits (397), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 125/207 (60%), Gaps = 7/207 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG +E ++EDY+++DV GV Y+++   R    L  +G+  +LF+ETH+R++ IRL
Sbjct: 1   MIGKLKGTLEHIFEDYIVLDVHGVGYVVFISNRLRPSLPSVGEALSLFIETHVREEAIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++WF +LQ+V GVGA+VA+ +L  ++  EL ++I L +  +I++ PG+  K+
Sbjct: 61  FGFATRAEQEWFCMLQNVPGVGAKVALAILGTLSPDELAQAIALNDVAMISRAPGVGKKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           + RI+ ELK K +        + +               A +A+SAL+ LG+ ++QA  A
Sbjct: 121 SERIVGELKSKTLPF------EQAVKTVSVPQREITHQPAHDALSALMKLGFEREQAARA 174

Query: 181 VVSVLKK-EKNIADDSQIIRLALRAIS 206
           +   +   E      + +IR +L+ +S
Sbjct: 175 LALAMNALEGEAVSSALLIRHSLKLLS 201


>gi|254487107|ref|ZP_05100312.1| Holliday junction DNA helicase RuvA [Roseobacter sp. GAI101]
 gi|214043976|gb|EEB84614.1| Holliday junction DNA helicase RuvA [Roseobacter sp. GAI101]
          Length = 221

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 74/219 (33%), Positives = 115/219 (52%), Gaps = 14/219 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGKI G I+    D+VLIDV+GV Y++YC  RTL+ L  +G+   LF +  +R+D ++L
Sbjct: 1   MIGKITGRIDYRAPDHVLIDVRGVGYLVYCSDRTLAALPGVGEAVALFTDLVVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++W  LL SVQGVGA+ ++ +L  +    +  +I L +   +    G+  KI
Sbjct: 61  FGFQTLAEKEWHRLLTSVQGVGAKASLAILGALGPDGVSRAIALGDWNAVKVAKGVGPKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA-------------HICSMPSFAINAISAL 167
           A R++ +LK KA  + ++ Q       + +A                   S    A+SAL
Sbjct: 121 AQRVVLDLKDKAPGVMAMTQTLAEAHGEVEAVQVIEAPEAKRRPATAPNHSAQSEALSAL 180

Query: 168 VNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
            NLGYG   A  AV        + AD   +IR AL+ ++
Sbjct: 181 GNLGYGPGDAAGAVAQAAGDMPD-ADTPTLIRAALKLLA 218


>gi|319899376|ref|YP_004159473.1| Holliday junction ATP-dependent DNA helicase ruvA [Bartonella
           clarridgeiae 73]
 gi|319403344|emb|CBI76903.1| Holliday junction ATP-dependent DNA helicase ruvA [Bartonella
           clarridgeiae 73]
          Length = 213

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 80/207 (38%), Positives = 129/207 (62%), Gaps = 3/207 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG +E +++D++++DVQGV YII+ P R  S L  IG+  +LF+ETH+R++ IRL
Sbjct: 1   MIGKLKGILEHIFDDHIILDVQGVGYIIFIPNRLHSSLPAIGESLSLFIETHVREEAIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++WF LLQ+V GVGA+VA+ +L  ++  +L ++I L +  +I++ PG+  K+
Sbjct: 61  FGFTTKSEKEWFCLLQNVPGVGAKVALALLGTLSINDLSQAITLNDIAMISRAPGVGKKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           + RI++ELK K  +L S         +              +A+ AL+ LG+  DQA TA
Sbjct: 121 SERIVSELKNK--ALLSKENNKSFAFSSSSLPSEEKHQPTNDALLALIKLGFDHDQAATA 178

Query: 181 VVSVLKKEKNIADDSQII-RLALRAIS 206
           V S L   K     S ++ R +L+ +S
Sbjct: 179 VTSALSSLKGETVSSALLVRHSLKLLS 205


>gi|319404769|emb|CBI78370.1| holliday junction DNA helicase RuvA [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 215

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 76/207 (36%), Positives = 130/207 (62%), Gaps = 1/207 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG +E ++ D++++DVQGV YII+ P R  S L  IG+  +LF+ETH+R++ IRL
Sbjct: 1   MIGKLKGILEHIFSDHIILDVQGVGYIIFIPNRLHSSLPAIGESLSLFIETHVREEAIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++WF LLQ+V GVGA+VA+ +L  ++  EL ++I L +   I++ PG+  K+
Sbjct: 61  FGFATKSEQEWFCLLQNVPGVGAKVALAILGSLSVNELTQAITLNDIATISRTPGVGKKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           + RI++ELK K +  S    ++++  +              +A+ AL+ LG+  ++A TA
Sbjct: 121 SERIVSELKNKTLQFSKEDNKNLAFSSSLTFSSEEEYQPTNDALLALIKLGFDHEKAATA 180

Query: 181 VVSVLKKEKNIADDSQII-RLALRAIS 206
           + S +   K     S ++ R +L+ +S
Sbjct: 181 LASAVSALKGETISSALLVRHSLKLLS 207


>gi|307294738|ref|ZP_07574580.1| Holliday junction DNA helicase RuvA [Sphingobium chlorophenolicum
           L-1]
 gi|306879212|gb|EFN10430.1| Holliday junction DNA helicase RuvA [Sphingobium chlorophenolicum
           L-1]
          Length = 202

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 74/206 (35%), Positives = 112/206 (54%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K+KG ++    D+ +IDV GV Y++    RTL+ LG +G+  T+  E  + +D IRL
Sbjct: 1   MIAKLKGRLDSTGLDHAIIDVGGVGYLVGASSRTLAALGPVGEAVTVHTEMLVSEDSIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF    +R WF LL SVQGVG+RVA+ +LS +   EL  S+   +  +IA+  G+  K+
Sbjct: 61  VGFARAEERDWFRLLTSVQGVGSRVALAILSALEPAELHRSVATGDKAMIARANGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  ELK K  ++        +          S    + +AISAL NLG+   +A++A
Sbjct: 121 AQRIANELKDKIGAV-----PTPAGGVGGGFAAVSGGGHSADAISALQNLGFKPAEASSA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V +   +    A    ++RLALR  +
Sbjct: 176 VAAAEGELGEDASLDALVRLALRKAA 201


>gi|257068561|ref|YP_003154816.1| Holliday junction DNA helicase, RuvA subunit [Brachybacterium
           faecium DSM 4810]
 gi|256559379|gb|ACU85226.1| Holliday junction DNA helicase, RuvA subunit [Brachybacterium
           faecium DSM 4810]
          Length = 205

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 107/205 (52%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +  D ++++V G+ Y++    + LS   + G   TL  E  +R+D + L
Sbjct: 1   MIASLTGRVARIDLDSLVLEVGGIGYLVRTTPQALSA-TRHGAELTLHTELVVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    + + F ++QSV G+G R A+ VL+ +   EL  ++  Q++K I + PGI  K+
Sbjct: 60  FGFPQLEEAETFRIVQSVSGIGPRTALAVLAVLEPEELRRAVAEQDAKTITRTPGIGPKV 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL GK  + +S+     +   +  A      +   + + ALV LG+ +  A  A
Sbjct: 120 AGRMLLELGGKLPAPASLSAVPGTPAAEAPATPSGADA---DVVEALVGLGWAEKAALKA 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V S    +    D ++++R ALR +
Sbjct: 177 VESARADDGAELDSAELLRRALRGL 201


>gi|198282210|ref|YP_002218531.1| Holliday junction DNA helicase RuvA [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218665092|ref|YP_002424575.1| Holliday junction DNA helicase RuvA [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|226698723|sp|B5EJL8|RUVA_ACIF5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226725431|sp|B7J3G2|RUVA_ACIF2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|198246731|gb|ACH82324.1| Holliday junction DNA helicase RuvA [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218517305|gb|ACK77891.1| Holliday junction DNA helicase RuvA [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 193

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G I      ++ +DVQGV Y +  P+     +   G   T+     +R+D   L
Sbjct: 1   MITSLTGTILQRRPPWLWLDVQGVGYELEMPLSGFYQMPAEGAALTVHTHLTIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  +R  F LL  V G+G +VA+  LS + A  L +++   N+  +  IPGI  K 
Sbjct: 61  YGFMTVAERDMFRLLIRVNGIGGKVALACLSGLPAERLSQAVAEGNTAQLTAIPGIGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K   ++                          AI+AL+ LGY   QA+ A
Sbjct: 121 AERLVVELRDKMGGIAPGPMGRGGA-----------GDPRQEAIAALLTLGYKPAQASQA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +     +      +IR +L+ +S
Sbjct: 170 IAGLA----DGLGLEDLIRQSLQNLS 191


>gi|296117349|ref|ZP_06835939.1| Holliday junction DNA helicase RuvA [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295976115|gb|EFG82903.1| Holliday junction DNA helicase RuvA [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 204

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 109/206 (52%), Gaps = 3/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +  +  D  +IDV GV Y++    RTLS L +  +   + +ET +R+D I L
Sbjct: 1   MIAQLTGLVGQVEADRCVIDVGGVGYLVLASTRTLSALPQGPEVARVLIETVVREDAILL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   +R WF LL +VQGVGA+VA+ +LS + A+EL+ +I   +   + +  G+  ++
Sbjct: 61  YGFIDAAERSWFRLLTTVQGVGAKVALAILSTLPASELIAAIASGDKSGLTRAAGVGARL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TEL+ K   +       +         +        +A+ AL  LG+ + +A   
Sbjct: 121 AQRIVTELRDKCDGMPGGGAPGVVMAG---VKVTGNGGVMSDALLALSGLGFRRAEAQPV 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  V+ +     D   IIR +L+ ++
Sbjct: 178 VARVMDRLDGGGDLDVIIRESLKELA 203


>gi|221639992|ref|YP_002526254.1| Holliday junction DNA helicase RuvA [Rhodobacter sphaeroides KD131]
 gi|254767384|sp|B9KKV6|RUVA_RHOSK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|221160773|gb|ACM01753.1| Holliday junction ATP-dependent DNA helicase ruvA [Rhodobacter
           sphaeroides KD131]
          Length = 224

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 120/222 (54%), Gaps = 17/222 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++    D+VLIDV+GV YI+Y   RTL+ +  +G+   L+ E  +R+D ++L
Sbjct: 1   MIGKVAGILDFRGPDHVLIDVRGVGYIVYVSDRTLASMPGLGEAVALYTELVVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++W  LL +VQGVGA+  M +L  + A     +I L +++ I   PGI  KI
Sbjct: 61  FGFPTMIEKEWHRLLMTVQGVGAKAGMAILGALGAEGTARAITLGDARSIQAAPGIGPKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQ----------------AHICSMPSFAINAI 164
           A R++ ELK KA +L ++     +    E                 A     PS   +A+
Sbjct: 121 AQRVVLELKSKAPALMAMGGGTAALAPSEPPEPQPGTSSGSRRKTRAPEPPRPSHTADAL 180

Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           SAL NLGY    A  AV     +  + AD + +IR AL+ ++
Sbjct: 181 SALANLGYQPTDAAQAVAQAAGESPD-ADTAALIRAALKLLA 221


>gi|83943911|ref|ZP_00956368.1| Holliday junction DNA helicase motor protein [Sulfitobacter sp.
           EE-36]
 gi|83845158|gb|EAP83038.1| Holliday junction DNA helicase motor protein [Sulfitobacter sp.
           EE-36]
          Length = 222

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/220 (32%), Positives = 115/220 (52%), Gaps = 15/220 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGKI G I+    D++LIDV+GV Y++YC  RT++ L  +G+   LF +  +R+D ++L
Sbjct: 1   MIGKITGRIDYRAPDHLLIDVRGVGYLVYCSDRTMAALPGVGEVVALFTDLVVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++W  LL SVQGVGA+ ++ +L  +    +  +I L +   +    G+  KI
Sbjct: 61  FGFQTLAEKEWHRLLTSVQGVGAKASLAILGALGPDGVSRAIALGDWNAVKVAKGVGPKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAH--------------ICSMPSFAINAISA 166
           A R++ +LK KA  + ++         + +A                    S    A+SA
Sbjct: 121 AQRVVLDLKDKAPGVMAMTGSLAEAHGEVEATAEVIETAAPKRRPVAPPNQSAQAEALSA 180

Query: 167 LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           L NLGYG   A  AV     +    AD  Q+IR AL+ ++
Sbjct: 181 LGNLGYGPGDAAGAVAQAAGEMPE-ADTPQLIRAALKLLA 219


>gi|154482944|ref|ZP_02025392.1| hypothetical protein EUBVEN_00642 [Eubacterium ventriosum ATCC
           27560]
 gi|149736228|gb|EDM52114.1| hypothetical protein EUBVEN_00642 [Eubacterium ventriosum ATCC
           27560]
          Length = 197

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 104/205 (50%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G +E + +D V++D  G+ Y I+    TL  +G IG+   ++    +R+D ++L
Sbjct: 1   MISYISGVVEEIEKDKVVVDNNGIGYGIFASQSTLEQIG-IGEQVKIYTYFSVREDAMQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  + Q F LL  V GVG +  + +LS      L  +++  ++K I++ PGI  K 
Sbjct: 60  YGFLSRQELQLFKLLIGVSGVGPKGGLAILSTCPGDSLSMAVLADDAKAISKAPGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELK K         +DM         +        +A+ AL  LGY Q  A  A
Sbjct: 120 AQKIIIELKDKID------IEDMIAGETISKPMTKASGVVGDAVEALTALGYSQTMAYQA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + S+  +  +  D  +I++ AL+ I
Sbjct: 174 IKSI--ENVDGMDVEEILKKALKNI 196


>gi|325105978|ref|YP_004275632.1| Holliday junction DNA helicase subunit RuvA [Pedobacter saltans DSM
           12145]
 gi|324974826|gb|ADY53810.1| Holliday junction DNA helicase subunit RuvA [Pedobacter saltans DSM
           12145]
          Length = 194

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +      Y++++  G+ Y I   + T S L K  + C L+   H+++D   +
Sbjct: 1   MYEYIDGKLVYKCPTYIVLEATGIGYHINISLNTFS-LVKDQEKCKLYTWLHVKEDGHTM 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + +R+ F+ L SV GVG   A  +LS I+  E+ ++II     +I  I GI  K 
Sbjct: 60  YGFADEGERRLFLHLISVNGVGPNTARMMLSSISPIEIEQAIIKGEVGLIKSIKGIGPKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +L+ K               +     I    +    AISALV LG+ ++ A  A
Sbjct: 120 AQRLIIDLQDKLQK----------SGDGTLIAIRQDYTAREEAISALVMLGFAKNNAEKA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V S +KK   I    +II++AL+++
Sbjct: 170 VDSAVKKSDKILSVEEIIKIALKSL 194


>gi|300309762|ref|YP_003773854.1| Holliday junction DNA resolvase DNA-binding subunit [Herbaspirillum
           seropedicae SmR1]
 gi|300072547|gb|ADJ61946.1| Holliday junction DNA resolvase, DNA-binding subunit protein
           [Herbaspirillum seropedicae SmR1]
          Length = 192

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 98/206 (47%), Gaps = 16/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L+D QGV Y +  P+ T   L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLSGILLEKLPPNLLVDCQGVGYEVAVPMSTYYNLPALGEKVTLLTHLAIREDAHIL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L  + GVGAR A+ +LS ++  +L +++ LQ +  + ++PGI  K 
Sbjct: 61  FGFGTAEERNTFKELIKISGVGARTALSILSGMSVADLAQAVTLQEAGRLTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R              +  +     +            + + ++AL+ LGY   +AT A
Sbjct: 121 AER------------LLLELKGKLGADLGAVAGVVHSDASADILNALLALGYSDKEATLA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  V       +  S  I+LAL+A+S
Sbjct: 169 MKQV----PKDSTVSDGIKLALKALS 190


>gi|189499398|ref|YP_001958868.1| Holliday junction DNA helicase RuvA [Chlorobium phaeobacteroides
           BS1]
 gi|229560017|sp|B3ELQ8|RUVA_CHLPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189494839|gb|ACE03387.1| Holliday junction DNA helicase RuvA [Chlorobium phaeobacteroides
           BS1]
          Length = 200

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 58/202 (28%), Positives = 100/202 (49%), Gaps = 8/202 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G +     D  +I+V GV Y++     T   L + G    +    H+++D ++L
Sbjct: 1   MFTYFRGELIEASPDEAVIEVSGVGYLLSISATTYRQLPEPGREVLVLAHLHVKEDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL + +RQ F LL S+ GVG ++A+ +LS +   E+ E+I+    + + +I G+  K 
Sbjct: 61  FGFLEEEERQLFRLLLSISGVGPKLALAILSGLQVHEIQEAIVSNMPERLFEITGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ EL+ + + L             +     S  S   +A++ALV LG+ +  A  A
Sbjct: 121 AARIVLELRDRILKLRP-------SGGTKSVSRLSESSMRDDAVNALVTLGFLRSVAQKA 173

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           V   L   +N      ++R AL
Sbjct: 174 VTESLTSLRNPQ-VEDLVRDAL 194


>gi|152980261|ref|YP_001352000.1| RuvA holliday junction DNA helicase [Janthinobacterium sp.
           Marseille]
 gi|166230559|sp|A6SUQ3|RUVA_JANMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|151280338|gb|ABR88748.1| RuvA holliday junction DNA helicase [Janthinobacterium sp.
           Marseille]
          Length = 191

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 94/206 (45%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L+D  GV Y +  P+ T   L  +GD   L     +R+D   L
Sbjct: 1   MIGRLSGVLLEKNPPQLLVDCNGVGYEVNVPMSTFYNLPGLGDKVVLLTHLTVREDAHIL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +R  F  L  + G+GAR A+ +LS ++  +L ++I +Q +  + +IPGI  K 
Sbjct: 61  FGFGTNEERNVFKQLVKITGIGARTALSILSGMSVADLAQAITMQEAGRLTKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R              +++                     + ++AL+ LGY   +A  A
Sbjct: 121 AER-------------LLLELKGKLGADLGVAGAVATDATSDILNALLALGYSDKEAMLA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  V          S  I+LAL+++S
Sbjct: 168 LKQV----PAGTGVSDGIKLALKSLS 189


>gi|145295781|ref|YP_001138602.1| Holliday junction DNA helicase RuvA [Corynebacterium glutamicum R]
 gi|166230545|sp|A4QEN4|RUVA_CORGB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|140845701|dbj|BAF54700.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 206

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 107/206 (51%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +     +I+  GV Y +     TLS L + G+   +     +R+D ++L
Sbjct: 1   MIASLRGTVINIGLSSAVIECNGVGYEVVTTPNTLSQLVR-GEEALVLTTMVVREDAMKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+ +  R+ F +LQ+V G+G R+A+   S ++  E+ ++I   ++K + ++PG+  ++
Sbjct: 60  YGFIDNESREMFSVLQTVSGLGPRLALACESVLSPLEISQAITNADAKALQRVPGVGKRM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK  + ++ V  +            +          ALV LG+ + Q+  A
Sbjct: 120 ADRLIVELKGKVAAFAAGVVDEAGEQISLPNANIASEVVVEQVSQALVGLGFSEKQSDDA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  VL  + ++ D S  +R AL  +S
Sbjct: 180 VSFVLAADPSL-DTSGALRAALAKLS 204


>gi|157964465|ref|YP_001499289.1| Holliday junction DNA helicase RuvA [Rickettsia massiliae MTU5]
 gi|157844241|gb|ABV84742.1| Holliday junction DNA helicase RuvA [Rickettsia massiliae MTU5]
          Length = 212

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 71/203 (34%), Positives = 121/203 (59%), Gaps = 6/203 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++   +DYV+IDV GV Y++Y   +TL  L + G+F  LF+ETH+R++ I L
Sbjct: 9   MIGKLSGKVDSQGDDYVIIDVNGVGYLVYASGKTLGKLAE-GEFYKLFIETHVREEHIHL 67

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++ +F LLQSV G+G R+A+ +LS +T +++  ++  ++  +   I G+  K+
Sbjct: 68  YGFLTLEEKNFFNLLQSVNGIGTRMALSILSSLTPSDIQIAVNNEDKNIFKAISGVGAKL 127

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK   +SS        +N +     +        I ALVNLG+ + +A  A
Sbjct: 128 AERVVLELKGKVAKISSGSAIIKDSLNIKNITPVASN----EVIKALVNLGFSRFEAQNA 183

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  ++ +   I    ++I+ AL+
Sbjct: 184 VQGIITQNPEI-SIDELIKTALK 205


>gi|91205752|ref|YP_538107.1| Holliday junction DNA helicase motor protein [Rickettsia bellii
           RML369-C]
 gi|122990902|sp|Q1RHZ6|RUVA_RICBR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|91069296|gb|ABE05018.1| Holliday junction DNA helicase RuvA [Rickettsia bellii RML369-C]
          Length = 203

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 74/203 (36%), Positives = 119/203 (58%), Gaps = 6/203 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++  Y+DYV+IDV GV Y ++   +TLS L + G+   LF+ETH+R+D I L
Sbjct: 1   MIGKLSGRVDSSYDDYVIIDVSGVGYRVFASAKTLSKLSE-GESYKLFIETHVREDHINL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  ++ +F LLQSV G+G R+A+ +LS +T T++  +I  ++  +   I G+  K+
Sbjct: 60  YGFLSLEEKSFFNLLQSVNGIGTRMALSILSTLTPTDIQIAINNEDKNIFKAISGVGAKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL  K   +SS        +N +     +        I AL+N+G+ + +A  A
Sbjct: 120 AERIVRELSDKVAKISSSSAAIKDSLNIKGITPVASS----EVIKALINMGFSRFEAQNA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  ++ K   I    ++IR AL+
Sbjct: 176 VQEIITKNPEI-SIDELIRTALK 197


>gi|326386113|ref|ZP_08207737.1| Holliday junction DNA helicase RuvA [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209338|gb|EGD60131.1| Holliday junction DNA helicase RuvA [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 206

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 73/204 (35%), Positives = 115/204 (56%), Gaps = 1/204 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K+ G ++    D+ +IDV GV Y+++   RTL+ LG  GD   +  E  + +  +RL
Sbjct: 1   MIAKLTGLLDDTGPDWAVIDVNGVGYLVHASARTLAHLGNRGDRVVIHTELQVSETDMRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF S  +R WF LL  VQGVG++VA+ +LS +T  EL  +    +S ++A+  G+  K+
Sbjct: 61  IGFASAGERAWFRLLTVVQGVGSKVALAILSALTVDELQRACAGGDSAMVARANGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ ELK KA  L+ +           +A + S  S + +A+SAL NLG+    A TA
Sbjct: 121 ASRIVNELKDKAGGLAGLSGGAGITAEPGEAPVVS-GSASADAVSALQNLGFKPAVAATA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V   +++    A    ++R+AL+ 
Sbjct: 180 VTKAIEELGEDASLGDLVRVALKR 203


>gi|332559001|ref|ZP_08413323.1| Holliday junction DNA helicase RuvA [Rhodobacter sphaeroides WS8N]
 gi|332276713|gb|EGJ22028.1| Holliday junction DNA helicase RuvA [Rhodobacter sphaeroides WS8N]
          Length = 224

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 120/222 (54%), Gaps = 17/222 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++    D+VLIDV+GV YI+Y   RTL+ +  +G+   L+ E  +R+D ++L
Sbjct: 1   MIGKVAGILDFRGPDHVLIDVRGVGYIVYVSDRTLASMPGLGEGVALYTELVVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++W  LL +VQGVGA+  M +L  + A     +I L +++ I   PGI  KI
Sbjct: 61  FGFPTMIEKEWHRLLMTVQGVGAKAGMAILGALGAEGTARAITLGDARSIQAAPGIGPKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQ----------------AHICSMPSFAINAI 164
           A R++ ELK KA +L ++     +    E                 A     PS   +A+
Sbjct: 121 AQRVVLELKSKAPALMAMGGGTAALAPSEPPEPDPGTSSGSRRKTRAPEPPRPSHTADAL 180

Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           SAL NLGY    A  AV     +  + AD + +IR AL+ ++
Sbjct: 181 SALANLGYQPTDAAQAVAQAAGESPD-ADTAALIRAALKLLA 221


>gi|312129386|ref|YP_003996726.1| holliday junction DNA helicase subunit ruva [Leadbetterella
           byssophila DSM 17132]
 gi|311905932|gb|ADQ16373.1| Holliday junction DNA helicase subunit RuvA [Leadbetterella
           byssophila DSM 17132]
          Length = 191

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 61/203 (30%), Positives = 100/203 (49%), Gaps = 12/203 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +        +IDVQGV Y++   ++T + L  +G+ C LF    +R+D   L
Sbjct: 1   MIAHLNGILSEKEPAQAVIDVQGVGYLLKISLQTSAALPAVGEKCKLFCLQIIREDAHTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L SV G+G  +A+  LS +T  E+V++I+ ++ K I  I GI +K 
Sbjct: 61  YGFATREERVLFEHLISVSGIGPAIALVFLSSMTGPEIVQAIVSEDVKTIQGIKGIGLKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R + ELK K                             + A++ALV LG  +  A  +
Sbjct: 121 AQRAVIELKDKLKK------------EPMATTGTLPARIRMEALAALVTLGIPKATAEKS 168

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V ++LK+        ++I+L+LR
Sbjct: 169 VDNILKRAPADITLEEVIKLSLR 191


>gi|163733514|ref|ZP_02140957.1| Holliday junction DNA helicase motor protein [Roseobacter litoralis
           Och 149]
 gi|161393302|gb|EDQ17628.1| Holliday junction DNA helicase motor protein [Roseobacter litoralis
           Och 149]
          Length = 218

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 73/216 (33%), Positives = 115/216 (53%), Gaps = 11/216 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGKI G +E    D+VLIDV+GV Y+++C  RTL+ L  +G+   L+ +  +R+D ++L
Sbjct: 1   MIGKITGRLEYRTTDHVLIDVRGVGYLVFCSERTLAALPGVGEVVALYTDLLVREDVMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++W  LL SVQGVGA+ ++ +L  + A  +  +I L +   +    G+  KI
Sbjct: 61  FGFTTLTEKEWHRLLTSVQGVGAKASLAILGTLGADGVSRAIALGDWNAVKAAKGVGPKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNK----------EQAHICSMPSFAINAISALVNL 170
           A R++ +LK KA S+  +                      A +   PS    A+SAL NL
Sbjct: 121 AQRVVLDLKDKAPSVMGMRDTQAIASADATDTVIETTATPAPVLQNPSAQAEALSALSNL 180

Query: 171 GYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           GYG   A  AV     +    A+   +IR AL+ ++
Sbjct: 181 GYGPGDAAGAVAEAAGEMPE-AETPDLIRAALKRLA 215


>gi|223938504|ref|ZP_03630396.1| Holliday junction DNA helicase RuvA [bacterium Ellin514]
 gi|223892766|gb|EEF59235.1| Holliday junction DNA helicase RuvA [bacterium Ellin514]
          Length = 201

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 95/205 (46%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +       V +DV GV Y +  P+ +   L + G    L     +R+D   L
Sbjct: 1   MINFLHGKLVEALPTQVTVDVNGVGYEVLIPLSSFDKLPQPGGEVKLLTHLAIREDAHVL 60

Query: 61  FGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +GF++  +R+ F LL  +V G+G ++A+ +LS +  T L  ++   + K ++QI G+  K
Sbjct: 61  YGFMTAGEREMFRLLMNTVTGIGPKLALNILSGMNVTMLRGAVSNGDVKSLSQISGVGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ ELK K  +  +            Q  +        +A+ AL+ LG+ Q +A  
Sbjct: 121 TAERIVVELKDKMGAAGAWEAASA------QRSLSEPDQRVNDAVLALMALGFKQPEAHD 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V S        A    ++R +L+ 
Sbjct: 175 TVRSAQVLLGQQATVEDLVRASLKK 199


>gi|193214311|ref|YP_001995510.1| Holliday junction DNA helicase RuvA [Chloroherpeton thalassium ATCC
           35110]
 gi|229560019|sp|B3QVA9|RUVA_CHLT3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|193087788|gb|ACF13063.1| Holliday junction DNA helicase RuvA [Chloroherpeton thalassium ATCC
           35110]
          Length = 200

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 108/203 (53%), Gaps = 7/203 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  + G +   +   ++++V GV Y++     T   L  IG+   +    ++R+D ++L
Sbjct: 1   MLSYLSGTLIEKFSTEIVVEVNGVGYLLNISATTHEKLPAIGNQIKILTYLYVREDALQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  DR+ F LL ++ GVG ++A  +LS ++  +L ES+I  ++K +  I G+  K 
Sbjct: 61  YGFITTEDREVFKLLIAISGVGPKLAQTILSGMSTAQLRESVIAGDTKALTAIAGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K + L      D+    KE A          +A SAL++LG+ +  A  A
Sbjct: 121 AERIILELKDKLVKL------DLKIDIKETAFRSDKQQVRNDAYSALISLGFTKSIAEKA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           + + + +  +      +IR+ALR
Sbjct: 175 MRAAIAEVPDG-SVDDLIRVALR 196


>gi|239827859|ref|YP_002950483.1| Holliday junction DNA helicase RuvA [Geobacillus sp. WCH70]
 gi|259495646|sp|C5D5E9|RUVA_GEOSW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|239808152|gb|ACS25217.1| Holliday junction DNA helicase RuvA [Geobacillus sp. WCH70]
          Length = 201

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 104/205 (50%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G ++ +  +Y++ID  G+ Y I+ P    S         T++   ++R+D + L
Sbjct: 1   MIEFVRGYVDYVCPEYIVIDNNGIGYQIFTP-NPFSFQESRDTIVTVYTYQYVREDTLAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+G +  + +L+     +LVE+I  +N   + + PG+  K 
Sbjct: 60  YGFRTREERTLFAKLLQVSGIGPKGGLAILAAGQPEQLVEAIEQENETFLCKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK  ++++    D+  + +E A      S    AI AL  LGY + +    
Sbjct: 120 ARQMILDLKGKLTAVTAKTFPDLFHLQEESAR--PHLSALEEAIEALKALGYAEREIQKV 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V S++K+        Q ++ AL+ +
Sbjct: 178 VPSLMKEN---LSTDQYVKRALQQL 199


>gi|19552871|ref|NP_600873.1| Holliday junction DNA helicase RuvA [Corynebacterium glutamicum
           ATCC 13032]
 gi|62390542|ref|YP_225944.1| Holliday junction DNA helicase RuvA [Corynebacterium glutamicum
           ATCC 13032]
 gi|20455261|sp|Q9AE10|RUVA_CORGL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|13346823|gb|AAK19839.1|AF331924_4 Holliday junction DNA-helicase RuvA [Corynebacterium glutamicum]
 gi|21324430|dbj|BAB99054.1| Holliday junction resolvasome DNA-binding subunit [Corynebacterium
           glutamicum ATCC 13032]
 gi|41325880|emb|CAF20043.1| Holliday junction resolvasome DNA-binding subunit [Corynebacterium
           glutamicum ATCC 13032]
          Length = 206

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 107/206 (51%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +     +I+  GV Y +     TLS L + G+   +     +R+D ++L
Sbjct: 1   MIASLRGTVINIGLSSAVIECNGVGYEVVTTPNTLSQLVR-GEEALVLTTMVVREDAMKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+ +  R+ F +LQ+V G+G R+A+   S ++  E+ ++I   ++K + ++PG+  ++
Sbjct: 60  YGFIDNESREMFSVLQTVSGLGPRLALACESVLSPLEISQAITNADAKTLQRVPGVGKRM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK  + ++ V  +            +          ALV LG+ + Q+  A
Sbjct: 120 ADRLIVELKGKVAAFAAGVVDEGGEQISLPNANIASEVVVEQVSQALVGLGFSEKQSDDA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  VL  + ++ D S  +R AL  +S
Sbjct: 180 VSFVLAADPSL-DTSGALRAALAKLS 204


>gi|121535579|ref|ZP_01667386.1| Holliday junction DNA helicase RuvA [Thermosinus carboxydivorans
           Nor1]
 gi|121305819|gb|EAX46754.1| Holliday junction DNA helicase RuvA [Thermosinus carboxydivorans
           Nor1]
          Length = 201

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 95/204 (46%), Gaps = 8/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +  L  D+ ++DV GV Y ++ P      L   G    LF   H+R+D + L
Sbjct: 1   MIGYLRGTVVHLGVDHCILDVNGVGYRVFVPASGRQRLVA-GAQAALFTYLHVREDALLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  + + F+LL  V G+G + A+ +LS ++      ++  +N  ++ +IPGI  K 
Sbjct: 60  YGFHTQDEYELFLLLMDVSGIGPKAALNILSAVSPEGFRLAVSQKNVSLLTKIPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K         +             S    A  A+ A++ LGY   +    
Sbjct: 120 AERIILELKDKV----GTSGETGGDAGLAATGSASAIDQADEALQAMLALGYSHAEVAPV 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           +  V  +        ++IRL LR 
Sbjct: 176 LKKVRHE---AQSVEELIRLVLRE 196


>gi|74318231|ref|YP_315971.1| DNA recombination protein, RuvA [Thiobacillus denitrificans ATCC
           25259]
 gi|90146182|sp|Q3SGT1|RUVA_THIDA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|74057726|gb|AAZ98166.1| DNA recombination protein, RuvA [Thiobacillus denitrificans ATCC
           25259]
          Length = 191

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 99/206 (48%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       VL+DV GVCY I  P+ T   L  IG+   L     +R+D   L
Sbjct: 1   MIGRITGTLAAKQPPQVLVDVNGVCYEIDVPMSTFYNLPGIGEKVALLTHLAIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+++R  F  L  V G+GA+ A+ VLS ++  +L  +I  Q    I ++PGI  K 
Sbjct: 61  YGFGSEVERAAFRELLKVSGIGAKTALSVLSGLSVNDLSAAIAAQEIGRIVKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK +   ++     +  +              +   AL+ LGY + +    
Sbjct: 121 AERLLLELKGKPVFAGALASVPSAGAS-------------DDVRQALLALGYNERETAAT 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  +           + IR ALRA+S
Sbjct: 168 VREL----PAGLAVGEAIRQALRALS 189


>gi|332530327|ref|ZP_08406273.1| Holliday junction DNA helicase RuvA [Hylemonella gracilis ATCC
           19624]
 gi|332040313|gb|EGI76693.1| Holliday junction DNA helicase RuvA [Hylemonella gracilis ATCC
           19624]
          Length = 194

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 94/206 (45%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       VL+D  GV Y +   + T   L  +G   TL     +R+D   L
Sbjct: 1   MIGRLSGTLIAKNPPEVLVDCHGVGYEVQVSMNTFYHLPVLGQPVTLLTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +R  F  L  V GVG R A+ VLS ++  EL +++  Q    + + PG+  K 
Sbjct: 61  YGFGEDAERAAFRELIKVSGVGPRTALAVLSGMSVAELAQAVTQQEMGRLLKAPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK  +   V                       +   AL+ LGY   +A   
Sbjct: 121 AERLLLELKGKLGADIGVAGPGAMAAGH---------DAQADIQQALLALGYSDKEA--- 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
             + LK      + S+ IRLAL++++
Sbjct: 169 -AAALKALPKDVEVSEGIRLALKSLA 193


>gi|188586412|ref|YP_001917957.1| Holliday junction DNA helicase RuvA [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|229560108|sp|B2A5L5|RUVA_NATTJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|179351099|gb|ACB85369.1| Holliday junction DNA helicase RuvA [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 214

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 54/212 (25%), Positives = 98/212 (46%), Gaps = 6/212 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +I+G +  +  DY ++   G+ Y IY P      +   G    L     +R+D + L
Sbjct: 1   MITRIRGEMLEITPDYCVVMAGGLGYKIYIPDNCQEEIPDPGQEIDLHTYLSVREDAMTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S      F L+ +V G+G ++A+ ++  I  TE   S++      + ++PGI  K 
Sbjct: 61  YGFTSGEQLAVFELIMNVSGIGPKIALALVGTIPPTEFYLSVLNDQVNQLTKVPGIGKKS 120

Query: 121 ASRIMTELKGKAISLSS------VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           A RI+ ELK K   ++S      +   +      E+  I +         +AL +LGY  
Sbjct: 121 AQRIILELKEKVKDITSKDAYQDISASEKLDNTGEKLGISTRHKHLDELKAALSSLGYTN 180

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
            +    V ++  +     D  +++RLAL+ ++
Sbjct: 181 REIEKTVDAIQGQITEGQDMEELLRLALQKLN 212


>gi|149185526|ref|ZP_01863842.1| probable holliday junction DNA helicase protein [Erythrobacter sp.
           SD-21]
 gi|148830746|gb|EDL49181.1| probable holliday junction DNA helicase protein [Erythrobacter sp.
           SD-21]
          Length = 201

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 67/206 (32%), Positives = 113/206 (54%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K+KG ++    D+ +IDV GV Y+++C  +TLS LG+ G+ CT++ +  + ++ +RL
Sbjct: 1   MIAKLKGLLDETGADWAVIDVSGVGYLVHCSTKTLSKLGEKGEACTVYTDLQVSENDMRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF    +R WF LL  VQGVG++VA+ +LS ++  E+ ++    ++  +A+  G+  K+
Sbjct: 61  LGFAEAAERDWFRLLTQVQGVGSKVALAILSALSTGEVQQACSNGDAATVARAQGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K              V    A        + +A+SAL NLG+    A  A
Sbjct: 121 AGRIVNELKDK------AGALPGGGVGGGTAPATPAGGASADAVSALENLGFKPAVAARA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V +   +    A +  +IR+AL+  +
Sbjct: 175 VAAAQGELGEGASEGDLIRVALKRAA 200


>gi|30022496|ref|NP_834127.1| Holliday junction DNA helicase motor protein [Bacillus cereus ATCC
           14579]
 gi|218234847|ref|YP_002369230.1| Holliday junction DNA helicase RuvA [Bacillus cereus B4264]
 gi|229048130|ref|ZP_04193701.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           AH676]
 gi|33301596|sp|Q817W3|RUVA_BACCR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226725434|sp|B7HE55|RUVA_BACC4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|29898054|gb|AAP11328.1| Holliday junction DNA helicase ruvA [Bacillus cereus ATCC 14579]
 gi|218162804|gb|ACK62796.1| Holliday junction DNA helicase RuvA [Bacillus cereus B4264]
 gi|228723233|gb|EEL74607.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           AH676]
 gi|326942202|gb|AEA18098.1| Holliday junction DNA helicase motor [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 205

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 96/205 (46%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +E +  +YV+ID  G+ Y I+ P        +      ++   ++R+D + L
Sbjct: 1   MFEYVTGYVEYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMAL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K 
Sbjct: 59  YGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   +      D+    +         +    A+ AL  LGY + + +  
Sbjct: 119 ARQMILDLKGKLADVVPDAFVDLFSDTERFDEKKGSSAELDEALEALRALGYAEREVSRV 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +LK+        Q I+ AL  +
Sbjct: 179 VPELLKE---SLTTDQYIKKALSLL 200


>gi|85709397|ref|ZP_01040462.1| Holliday junction DNA helicase motor protein [Erythrobacter sp.
           NAP1]
 gi|85688107|gb|EAQ28111.1| Holliday junction DNA helicase motor protein [Erythrobacter sp.
           NAP1]
          Length = 228

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 113/206 (54%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K+ G ++ + ED+ ++DVQGV Y+++C  RTLS LG+ G+ CT+  +  + ++ +RL
Sbjct: 27  MIAKLSGRLDEIGEDWAIVDVQGVGYLVHCSARTLSALGEKGEACTVHTDLQVSENDMRL 86

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF    +R WF LL  VQGVG++V + +LS ++  EL ++    ++  +A+  G+  K+
Sbjct: 87  LGFAESAERDWFRLLTQVQGVGSKVGLAILSALSTGELRDACAAGDAASVARANGVGPKL 146

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K  +L       +       A   S  +     +SAL NLG+    A  A
Sbjct: 147 AGRIVNELKDKVGALPGGGMAGVPMGAAAPAGSASADA-----VSALENLGFKPAIAAQA 201

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V     +    A +  +IR+AL+  +
Sbjct: 202 VARATAELGEDAPEGDLIRVALKKAA 227


>gi|238650928|ref|YP_002916784.1| Holliday junction DNA helicase motor protein [Rickettsia peacockii
           str. Rustic]
 gi|259495655|sp|C4K2D5|RUVA_RICPU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|238625026|gb|ACR47732.1| Holliday junction DNA helicase motor protein [Rickettsia peacockii
           str. Rustic]
          Length = 203

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/203 (34%), Positives = 121/203 (59%), Gaps = 6/203 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++   +DYV+IDV GV Y++Y   +TL  L + G+F  LF+ETH+R++ + L
Sbjct: 1   MIGKLSGKVDSQGDDYVIIDVNGVGYLVYASDKTLGTLAE-GEFYKLFIETHVREEHMHL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++ +F LLQSV G+G R+A+ +LS +T +++  ++  ++  +   I G+  K+
Sbjct: 60  YGFLTLEEKIFFNLLQSVNGIGTRMALFILSSLTPSDIQIAVNNEDKNIFKAISGVGAKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELKGK   +SS        +N +     +        I ALVNLG+ + +A  A
Sbjct: 120 AERIVLELKGKVAKISSGSAIIKESLNIKNITPVASN----EVIKALVNLGFSRFEAQNA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  ++ +   I    ++I+ AL+
Sbjct: 176 VQGIITQNPEI-SIDELIKTALK 197


>gi|157827122|ref|YP_001496186.1| Holliday junction DNA helicase RuvA [Rickettsia bellii OSU 85-389]
 gi|166200254|sp|A8GWC2|RUVA_RICB8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|157802426|gb|ABV79149.1| Holliday junction DNA helicase motor protein [Rickettsia bellii OSU
           85-389]
          Length = 203

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 74/203 (36%), Positives = 119/203 (58%), Gaps = 6/203 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++  Y+DYV+IDV GV Y ++   +TLS L + G+   LF+ETH+R+D I L
Sbjct: 1   MIGKLSGRVDSSYDDYVIIDVSGVGYRVFASAKTLSKLSE-GESYKLFIETHVREDHINL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  ++ +F LLQSV G+G R+A+ +LS +T T++  +I  ++  +   I G+  K+
Sbjct: 60  YGFLSLEEKSFFNLLQSVNGIGTRMALSILSALTPTDIQIAINNEDKNIFKAISGVGAKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL  K   +SS        +N +     +        I AL+N+G+ + +A  A
Sbjct: 120 AERIVRELSDKVAKISSSSAAIKDSLNIKGITPVASS----EVIKALINMGFSRFEAQNA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  ++ K   I    ++IR AL+
Sbjct: 176 VQEIITKNPEI-SIDELIRTALK 197


>gi|206969835|ref|ZP_03230789.1| Holliday junction DNA helicase RuvA [Bacillus cereus AH1134]
 gi|228954705|ref|ZP_04116728.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|229180697|ref|ZP_04308037.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           172560W]
 gi|206735523|gb|EDZ52691.1| Holliday junction DNA helicase RuvA [Bacillus cereus AH1134]
 gi|228602842|gb|EEK60323.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           172560W]
 gi|228805032|gb|EEM51628.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
          Length = 205

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 96/205 (46%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +E +  +YV+ID  G+ Y I+ P        +      ++   ++R+D + L
Sbjct: 1   MFEYVTGYVEYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMAL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K 
Sbjct: 59  YGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   +      D+    +         +    A+ AL  LGY + + +  
Sbjct: 119 ARQMILDLKGKLADVVPDAFVDLFSDTERFDENKGSSAELDEALEALRALGYAEREVSRV 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +LK+        Q I+ AL  +
Sbjct: 179 VPELLKE---ALTTDQYIKKALSLL 200


>gi|239947225|ref|ZP_04698978.1| holliday junction DNA helicase RuvA [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239921501|gb|EER21525.1| holliday junction DNA helicase RuvA [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 203

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 75/203 (36%), Positives = 122/203 (60%), Gaps = 6/203 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++   +DYV+IDV GV Y++Y   +TL  L + G+F  LF+ETH+R++ I L
Sbjct: 1   MIGKLSGKVDSQGDDYVIIDVNGVGYLVYASGKTLGKLAE-GEFYKLFIETHVREEHIHL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++ +F LLQSV G+G R+A+ +LS +T +++  +I  ++  +   I G+  K+
Sbjct: 60  YGFLTLEEKSFFNLLQSVNGIGTRMALSILSSLTPSDIQIAINNEDKNIFKAISGVGAKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELKGK   +SS        +N +     +        I ALVNLG+ + +A  A
Sbjct: 120 AERIVLELKGKVAKISSGSTIIKDSLNIKNITPVASN----EVIKALVNLGFSRFEAQNA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V S++ +   I    Q+I+ AL+
Sbjct: 176 VQSIITQNPEI-SIDQLIKTALK 197


>gi|325299672|ref|YP_004259589.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacteroides
           salanitronis DSM 18170]
 gi|324319225|gb|ADY37116.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacteroides
           salanitronis DSM 18170]
          Length = 199

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 101/205 (49%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +      + ++D  GV Y I   + T S + +      LF+   +R+D   L
Sbjct: 1   MIEYIKGELAEAAPAFAVVDCNGVGYGINISLNTYSAI-QGKKEVKLFIYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F+LL SV G+G   A  +LS ++  EL   I   N K++  + GI +K 
Sbjct: 60  YGFSTKQERELFLLLISVPGIGGNTARMILSALSPRELCNVISTGNDKLLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K  S     +           +          A++ALV LG+ Q  +  A
Sbjct: 120 AQRIIVDLKDKIASTGIEEEASTVSSLSHTVNT----EIYEEAVAALVMLGFAQAPSQKA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V S+LK E + A   ++I+LAL+ +
Sbjct: 176 VASILKAEPDAA-VERVIKLALKML 199


>gi|218899590|ref|YP_002448001.1| Holliday junction DNA helicase RuvA [Bacillus cereus G9842]
 gi|228902949|ref|ZP_04067090.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis IBL 4222]
 gi|226725433|sp|B7IIT3|RUVA_BACC2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|218542616|gb|ACK95010.1| Holliday junction DNA helicase RuvA [Bacillus cereus G9842]
 gi|228856733|gb|EEN01252.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis IBL 4222]
          Length = 205

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 96/205 (46%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +E +  +YV+ID  G+ Y I+ P        +      ++   ++R+D + L
Sbjct: 1   MFEYVTGYVEYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMAL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K 
Sbjct: 59  YGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   +      D+    +         +    A+ AL  LGY + + +  
Sbjct: 119 ARQMILDLKGKLADVVPDAFVDLFSDTERFDEKKGTSAELDEALEALRALGYAEREVSRV 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +LK+        Q I+ AL  +
Sbjct: 179 VPELLKE---SLTTDQYIKKALSLL 200


>gi|303230216|ref|ZP_07316984.1| Holliday junction DNA helicase RuvA [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302515142|gb|EFL57116.1| Holliday junction DNA helicase RuvA [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 202

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 106/205 (51%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +  L+++   +DV GV Y +Y P  T   L + G   TLF   ++R+D ++L
Sbjct: 1   MIGYVRGIVTHLFKESCYVDVHGVGYRVYVPTTTRQQLIE-GQEATLFTYLNVREDAMQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ + + F+LL SV G+G +V +G+LS +T      ++I    + + ++PGI  K 
Sbjct: 60  YGFWTEDEYELFILLISVSGIGPKVGLGILSGMTPEAFKLAVINGQVQQLTKLPGIGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K + ++ +  +  + +                AI ALV+LGY Q      
Sbjct: 120 AERLVLELKDKLVKMTQISVETPAAIQPIGVTHSGPSG---EAIEALVSLGYAQKDVEAL 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V S+        D S +I+  L  +
Sbjct: 177 VESL---NDGSKDVSALIKACLVEL 198


>gi|303231814|ref|ZP_07318530.1| Holliday junction DNA helicase RuvA [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513521|gb|EFL55547.1| Holliday junction DNA helicase RuvA [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 202

 Score =  156 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 106/205 (51%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +  L+++   +DV GV Y +Y P  T   L + G   TLF   ++R+D ++L
Sbjct: 1   MIGYVRGIVTHLFKESCYVDVHGVGYRVYVPTTTRQQLIE-GQEATLFTYLNVREDAMQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ + + F+LL SV G+G +V +G+LS +T      ++I    + + ++PGI  K 
Sbjct: 60  YGFWTEDEYELFILLISVSGIGPKVGLGILSGMTPEAFKLAVINGQVQQLTKLPGIGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K + ++ +  +  S +                AI ALV+LGY Q      
Sbjct: 120 AERLVLELKDKLVKMTQISVETPSAIQSIGVTHSGPSG---EAIEALVSLGYAQKDVEAL 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V S+        D S +I+  L  +
Sbjct: 177 VESL---NDGSKDVSALIKACLVEL 198


>gi|190893294|ref|YP_001979836.1| holliday junction DNA helicase [Rhizobium etli CIAT 652]
 gi|229560121|sp|B3PYZ4|RUVA_RHIE6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|190698573|gb|ACE92658.1| holliday junction DNA helicase protein [Rhizobium etli CIAT 652]
          Length = 204

 Score =  156 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 94/206 (45%), Positives = 145/206 (70%), Gaps = 3/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + EDYVL+DV GVCY+ +C  RTLS LG  G+ C LF+ET++R+DQ++L
Sbjct: 1   MIGKLKGTIDEIGEDYVLVDVHGVCYVAHCSARTLSKLGSAGEACVLFIETYVREDQLKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF++ L+R+WF LLQSVQGVGA+VA+ VLS +T +EL  +I LQ+   +++ PG+  K+
Sbjct: 61  FGFMTALEREWFNLLQSVQGVGAKVALAVLSTLTPSELANAIALQDRAAVSRAPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++TELK +A + +    + ++   K++       +   +A+SAL NLGY +DQA  A
Sbjct: 121 AMRLVTELKNRAPAFAG---EAINIALKQELGEGVAAAPVADAVSALTNLGYSRDQAANA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + +K   + AD +++IRL L+ ++
Sbjct: 178 VAAAMKTAGDGADSAKLIRLGLKELA 203


>gi|114330310|ref|YP_746532.1| Holliday junction DNA helicase RuvA [Nitrosomonas eutropha C91]
 gi|122314644|sp|Q0AJA4|RUVA_NITEC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|114307324|gb|ABI58567.1| Holliday junction DNA helicase subunit RuvA [Nitrosomonas eutropha
           C91]
          Length = 194

 Score =  156 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 104/206 (50%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +   +   VL+DVQG  Y I  P+ T   L  IG   TL     +R+D   L
Sbjct: 1   MIGRITGLLLEKHPPLVLVDVQGTGYEIDVPMSTFCKLPDIGKKVTLHTHFWVREDVHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+++ +R  F  L  + G+GAR  + +LS ++ T+L ++++ Q+S  + +IPGI  K 
Sbjct: 61  FGFMTEQERALFRQLTKISGIGARTGLAILSGLSVTDLHQAVVSQDSIRLTKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K   ++ + +   +  N              + +SAL+ LGY   +    
Sbjct: 121 AERLLLELRDKIDPVAILSEAGAAASN-----------VDKDILSALLALGYNGRE---- 165

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V   L++       S  I  +L+ +S
Sbjct: 166 VNRALEQLSEGVTVSDGIMQSLKFLS 191


>gi|226698801|sp|A4G1U8|RUVA_HERAR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|193222212|emb|CAL60485.2| Holliday junction DNA helicase ruvA [Herminiimonas arsenicoxydans]
          Length = 192

 Score =  156 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 93/206 (45%), Gaps = 16/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L+D  GV Y +  P+ T   L  +G+   L     +R+D   L
Sbjct: 1   MIGRLSGVLLEKNPPQLLVDCNGVGYEVNVPMSTFYNLPGLGEKVALLTHLTVREDAHIL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L  + G+GAR A+ +LS ++  +L  +I LQ +  + +IPGI  K 
Sbjct: 61  FGFGTAEERNVFKQLVKITGIGARTALSILSGMSVADLSNAITLQEAGRLTKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R              +  +     +   A          + ++AL+ LGY   +A  A
Sbjct: 121 AER------------LLLELKGKLGADLGAAGGVIHSDATSDILNALLALGYSDKEALLA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  V          S  I+LAL+A+S
Sbjct: 169 MKQV----PAGTGVSDGIKLALKALS 190


>gi|30264491|ref|NP_846868.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. Ames]
 gi|42783552|ref|NP_980799.1| Holliday junction DNA helicase RuvA [Bacillus cereus ATCC 10987]
 gi|47566611|ref|ZP_00237433.1| Holliday junction DNA helicase RuvA [Bacillus cereus G9241]
 gi|47778316|ref|YP_021298.2| Holliday junction DNA helicase RuvA [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187311|ref|YP_030563.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str.
           Sterne]
 gi|49481508|ref|YP_038471.1| Holliday junction DNA helicase RuvA [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52141085|ref|YP_085744.1| Holliday junction DNA helicase motor protein [Bacillus cereus E33L]
 gi|65321787|ref|ZP_00394746.1| COG0632: Holliday junction resolvasome, DNA-binding subunit
           [Bacillus anthracis str. A2012]
 gi|118479576|ref|YP_896727.1| Holliday junction DNA helicase RuvA [Bacillus thuringiensis str. Al
           Hakam]
 gi|165871987|ref|ZP_02216628.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0488]
 gi|167636186|ref|ZP_02394490.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0442]
 gi|167640739|ref|ZP_02398999.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0193]
 gi|170688710|ref|ZP_02879915.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0465]
 gi|170709117|ref|ZP_02899544.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0389]
 gi|177653948|ref|ZP_02935989.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0174]
 gi|190567070|ref|ZP_03019986.1| Holliday junction DNA helicase RuvA [Bacillus anthracis
           Tsiankovskii-I]
 gi|196034433|ref|ZP_03101842.1| Holliday junction DNA helicase RuvA [Bacillus cereus W]
 gi|196039270|ref|ZP_03106576.1| Holliday junction DNA helicase RuvA [Bacillus cereus NVH0597-99]
 gi|196044806|ref|ZP_03112040.1| Holliday junction DNA helicase RuvA [Bacillus cereus 03BB108]
 gi|206976012|ref|ZP_03236922.1| Holliday junction DNA helicase RuvA [Bacillus cereus H3081.97]
 gi|217961912|ref|YP_002340482.1| Holliday junction DNA helicase RuvA [Bacillus cereus AH187]
 gi|225866402|ref|YP_002751780.1| Holliday junction DNA helicase RuvA [Bacillus cereus 03BB102]
 gi|227817199|ref|YP_002817208.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. CDC
           684]
 gi|229141160|ref|ZP_04269701.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           BDRD-ST26]
 gi|229602821|ref|YP_002868707.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0248]
 gi|254684176|ref|ZP_05148036.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724653|ref|ZP_05186436.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A1055]
 gi|254736523|ref|ZP_05194229.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str.
           Western North America USA6153]
 gi|254741561|ref|ZP_05199248.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. Kruger
           B]
 gi|254751340|ref|ZP_05203377.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str.
           Vollum]
 gi|254757672|ref|ZP_05209699.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str.
           Australia 94]
 gi|301055929|ref|YP_003794140.1| holliday junction DNA helicase motor protein [Bacillus anthracis
           CI]
 gi|33301601|sp|Q81LG8|RUVA_BACAN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|81394735|sp|Q6HDA5|RUVA_BACHK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|81409055|sp|Q730B1|RUVA_BACC1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|81686087|sp|Q634C3|RUVA_BACCZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230517|sp|A0RJ27|RUVA_BACAH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226725435|sp|B7HQI0|RUVA_BACC7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254766941|sp|C3P9A8|RUVA_BACAA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254766942|sp|C3L6V0|RUVA_BACAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254766943|sp|C1ESW5|RUVA_BACC3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|30259149|gb|AAP28354.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. Ames]
 gi|42739481|gb|AAS43407.1| Holliday junction DNA helicase RuvA [Bacillus cereus ATCC 10987]
 gi|47552021|gb|AAT33773.2| Holliday junction DNA helicase RuvA [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47556641|gb|EAL14973.1| Holliday junction DNA helicase RuvA [Bacillus cereus G9241]
 gi|49181238|gb|AAT56614.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str.
           Sterne]
 gi|49333064|gb|AAT63710.1| holliday junction DNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51974554|gb|AAU16104.1| Holliday junction DNA helicase, subunit A [Bacillus cereus E33L]
 gi|118418801|gb|ABK87220.1| Holliday junction DNA helicase subunit RuvA [Bacillus thuringiensis
           str. Al Hakam]
 gi|164712277|gb|EDR17813.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0488]
 gi|167511311|gb|EDR86697.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0193]
 gi|167528407|gb|EDR91175.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0442]
 gi|170125969|gb|EDS94869.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0389]
 gi|170667396|gb|EDT18154.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0465]
 gi|172081003|gb|EDT66081.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0174]
 gi|190562061|gb|EDV16030.1| Holliday junction DNA helicase RuvA [Bacillus anthracis
           Tsiankovskii-I]
 gi|195992975|gb|EDX56934.1| Holliday junction DNA helicase RuvA [Bacillus cereus W]
 gi|196024294|gb|EDX62967.1| Holliday junction DNA helicase RuvA [Bacillus cereus 03BB108]
 gi|196029897|gb|EDX68498.1| Holliday junction DNA helicase RuvA [Bacillus cereus NVH0597-99]
 gi|206745764|gb|EDZ57161.1| Holliday junction DNA helicase RuvA [Bacillus cereus H3081.97]
 gi|217066649|gb|ACJ80899.1| Holliday junction DNA helicase RuvA [Bacillus cereus AH187]
 gi|225789206|gb|ACO29423.1| Holliday junction DNA helicase RuvA [Bacillus cereus 03BB102]
 gi|227004034|gb|ACP13777.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. CDC
           684]
 gi|228642323|gb|EEK98613.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           BDRD-ST26]
 gi|229267229|gb|ACQ48866.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0248]
 gi|300378098|gb|ADK07002.1| holliday junction DNA helicase motor protein [Bacillus cereus
           biovar anthracis str. CI]
 gi|324328324|gb|ADY23584.1| Holliday junction DNA helicase RuvA [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 205

 Score =  156 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 96/205 (46%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +E +  +YV+ID  G+ Y I+ P        +      ++   ++R+D + L
Sbjct: 1   MFEYVTGYVEYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMAL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K 
Sbjct: 59  YGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   +      D+    +         +    A+ AL  LGY + + +  
Sbjct: 119 ARQMILDLKGKLADVVPDAFVDLFSDEERFDEKKGSSAELDEALEALRALGYAEREVSRV 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +LK+        Q I+ AL  +
Sbjct: 179 VPELLKE---SLTTDQYIKKALSLL 200


>gi|218905615|ref|YP_002453449.1| Holliday junction DNA helicase RuvA [Bacillus cereus AH820]
 gi|218536299|gb|ACK88697.1| Holliday junction DNA helicase RuvA [Bacillus cereus AH820]
          Length = 541

 Score =  156 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 96/205 (46%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +E +  +YV+ID  G+ Y I+ P        +      ++   ++R+D + L
Sbjct: 1   MFEYVTGYVEYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMAL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K 
Sbjct: 59  YGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   +      D+    +         +    A+ AL  LGY + + +  
Sbjct: 119 ARQMILDLKGKLADVVPDAFVDLFSDEERFDEKKGSSAELDEALEALRALGYAEREVSRV 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +LK+        Q I+ AL  +
Sbjct: 179 VPELLKE---SLTTDQYIKKALSLL 200


>gi|327194147|gb|EGE61017.1| holliday junction DNA helicase protein [Rhizobium etli CNPAF512]
          Length = 204

 Score =  156 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 94/206 (45%), Positives = 144/206 (69%), Gaps = 3/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + EDYVL+DV GVCY+ +C  RTLS LG  G+ C LF+ET++R+DQ++L
Sbjct: 1   MIGKLKGTIDEIGEDYVLVDVHGVCYVAHCSARTLSKLGSAGEACVLFIETYVREDQLKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF++ L+R+WF LLQSVQGVGA+VA+ VLS +T  EL  +I LQ+   +++ PG+  K+
Sbjct: 61  FGFMTALEREWFNLLQSVQGVGAKVALAVLSTLTPGELANAIALQDRAAVSRAPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++TELK +A + +    + ++   K++       +   +A+SAL NLGY +DQA  A
Sbjct: 121 AMRLVTELKNRAPAFAG---EAINIALKQELGEGVAAAPVADAVSALTNLGYSRDQAANA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + +K   + AD +++IRL L+ ++
Sbjct: 178 VAAAMKTAGDGADSAKLIRLGLKELA 203


>gi|149915610|ref|ZP_01904136.1| Holliday junction DNA helicase motor protein [Roseobacter sp.
           AzwK-3b]
 gi|149810502|gb|EDM70345.1| Holliday junction DNA helicase motor protein [Roseobacter sp.
           AzwK-3b]
          Length = 223

 Score =  156 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 69/221 (31%), Positives = 113/221 (51%), Gaps = 16/221 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G I+    D+VLIDV+GV Y++YC  RTL  L ++G+   L+ +  +R+D ++L
Sbjct: 1   MIGRIAGRIDYRASDHVLIDVRGVGYLVYCSDRTLQSLPRVGEHTALYTDLVVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++W  LL SVQGVGA+ ++ +L  +    +  +I L +   +    GI  K 
Sbjct: 61  FGFPTLIEKEWHRLLMSVQGVGAKASLAILGALGPDGVGRAIALGDWNAVKAARGIGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM---------------PSFAINAIS 165
           A R++ ELK K   L ++     +      +                          A+S
Sbjct: 121 AQRVVNELKDKLPELMAMGTTPTASAPAPPSDAEDAVIEPASLAAAPPPPRSDAQAEALS 180

Query: 166 ALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           AL NLGY   +A  AV    + +   A+ + +IR ALR ++
Sbjct: 181 ALTNLGYAPGEAARAVAQAAESDPQ-AETAAMIRAALRLLA 220


>gi|23099492|ref|NP_692958.1| holliday junction DNA helicase [Oceanobacillus iheyensis HTE831]
 gi|33301656|sp|Q8EPQ5|RUVA_OCEIH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|22777721|dbj|BAC13993.1| holliday junction DNA helicase [Oceanobacillus iheyensis HTE831]
          Length = 201

 Score =  156 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 97/206 (47%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +  L ++ +++DV G+ Y I CP         +     +    H+R+D   L
Sbjct: 1   MIAYIKGTLNSLGDESLIVDVGGIGYEIVCP-NPFVFQDLLNQQIHIQTYHHVREDAQIL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  ++  F  L SV G+G + A+ +L+ +  +  + ++  ++ K +   PG+  K 
Sbjct: 60  FGFQNRDEKYLFTKLISVSGIGPKGALAILAGVDISGFIAAVENEDDKFLTSFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK  S+ S+  +      K      +       A+ AL  LGY   +    
Sbjct: 120 ARQIILDLKGKLTSVFSITDE----QQKSSVSNVNNNEVYSEAMEALKALGYTDKEVKQV 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +   LKK+ +     + IR AL  ++
Sbjct: 176 LPH-LKKDNDALSVDEAIRKALALLA 200


>gi|261405408|ref|YP_003241649.1| Holliday junction DNA helicase RuvA [Paenibacillus sp. Y412MC10]
 gi|261281871|gb|ACX63842.1| Holliday junction DNA helicase RuvA [Paenibacillus sp. Y412MC10]
          Length = 205

 Score =  156 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  L  +Y+++DVQGV Y ++CP        K     T+F   H+R+D I L
Sbjct: 1   MIDFLRGQVVHLESEYIVLDVQGVGYRVFCPNP--YAFAKTEGTVTVFTHHHVREDAILL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++ F  L  V G+G RVA+G+L   +   +V +I  +N   + ++PGI  K 
Sbjct: 59  FGFPTREEQKLFRKLIEVSGIGPRVALGILGGGSPDHVVSAIYQENISFLIKLPGIGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K                 ++       S    A   L  LGY   +    
Sbjct: 119 AQRMILDLKDKLEGF-GNASMMTGLFAIQEPEADDGGSAWSEAREGLKALGYTDSELDKV 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
            + +     +      +++ AL+ +
Sbjct: 178 WLKIKDSGASGESVDVLMKRALQQL 202


>gi|15892454|ref|NP_360168.1| Holliday junction DNA helicase motor protein [Rickettsia conorii
           str. Malish 7]
 gi|20140118|sp|Q92I89|RUVA_RICCN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|15619609|gb|AAL03069.1| holliday junction DNA helicase RuvA [Rickettsia conorii str. Malish
           7]
          Length = 203

 Score =  156 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 71/203 (34%), Positives = 121/203 (59%), Gaps = 6/203 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G ++   +DYV+IDV GV Y++Y   +TL  L + G+F  LF+ETH+R++ I L
Sbjct: 1   MIGQLSGKVDSQGDDYVIIDVNGVGYLVYASGKTLGKLAE-GEFYKLFIETHVREEHIHL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++ +F LLQSV G+G R+A+ +LS +T +++  ++  ++  +   I G+  K+
Sbjct: 60  YGFLTLEEKIFFNLLQSVNGIGTRMALFILSSLTPSDIQIAVNNEDKNIFKAISGVGAKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELKGK   +SS        +N +     +        I ALVNLG+ + +A  A
Sbjct: 120 AERIVLELKGKVAKISSGSAIIKESLNIKNITPVASN----EVIKALVNLGFSRFEAQNA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  ++ +   I    ++I+ AL+
Sbjct: 176 VQGIITQNPEI-SIDELIKTALK 197


>gi|302391487|ref|YP_003827307.1| Holliday junction DNA helicase RuvA [Acetohalobium arabaticum DSM
           5501]
 gi|302203564|gb|ADL12242.1| Holliday junction DNA helicase RuvA [Acetohalobium arabaticum DSM
           5501]
          Length = 201

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 59/204 (28%), Positives = 101/204 (49%), Gaps = 8/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +    E  ++IDVQGV Y +  P    + L  IG+   ++  T++R+D+  L
Sbjct: 1   MIAHLTGELVLKEEARIVIDVQGVGYEVMIPTSVQNRLPNIGEDIKVYTHTYVREDRFVL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL   + + F  L  V  VG +VA+ +LS + A E   ++  ++ +V+ ++ GI  K 
Sbjct: 61  YGFLQLSELELFGKLLKVSKVGPKVAVSILSTLNAREFKLAVAKEDIEVLKEVKGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+KGK      + +++ S                  A+  L+NLGY   +A  A
Sbjct: 121 AQRLILEMKGKIDLDRIMEEEESS--------QSVDGIEREEAVEGLMNLGYNIQEAREA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V    K     A   ++I+LAL+ 
Sbjct: 173 VTEACKGVDEAAGVEEVIKLALQK 196


>gi|157828405|ref|YP_001494647.1| Holliday junction DNA helicase RuvA [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165933115|ref|YP_001649904.1| Holliday junction DNA helicase RuvA [Rickettsia rickettsii str.
           Iowa]
 gi|166200256|sp|A8GRW4|RUVA_RICRS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189045764|sp|B0BXC2|RUVA_RICRO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|157800886|gb|ABV76139.1| Holliday junction DNA helicase motor protein [Rickettsia rickettsii
           str. 'Sheila Smith']
 gi|165908202|gb|ABY72498.1| Holliday junction DNA helicase [Rickettsia rickettsii str. Iowa]
          Length = 204

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 72/203 (35%), Positives = 121/203 (59%), Gaps = 6/203 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++   +DYV+IDV GV Y++Y   +TL  L + G+F  LF+ETH+R++ I L
Sbjct: 1   MIGKLSGKVDSQGDDYVIIDVNGVGYLVYASGKTLGTLAE-GEFYKLFIETHVREEHIHL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++ +F LLQSV G+G R+A+ +LS +T +++  ++  ++  +   I G+  K+
Sbjct: 60  YGFLTLEEKIFFNLLQSVNGIGTRMALFILSSLTPSDIQIAVNNEDKNIFKAISGVGAKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELKGK   +SS        +N +     +        I ALVNLG+ + +A  A
Sbjct: 120 AERIVLELKGKVAKISSGSAIIKESLNIKNITPVASN----EVIKALVNLGFSRFEAQNA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  ++ +   I    ++I+ AL+
Sbjct: 176 VQGIITQNPEI-SIDELIKTALK 197


>gi|329926780|ref|ZP_08281188.1| Holliday junction DNA helicase RuvA [Paenibacillus sp. HGF5]
 gi|328938980|gb|EGG35348.1| Holliday junction DNA helicase RuvA [Paenibacillus sp. HGF5]
          Length = 205

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  L  +Y+++DVQGV Y ++CP        K     T+F   H+R+D I L
Sbjct: 1   MIDFLRGQVVHLESEYIVLDVQGVGYRVFCPNP--YAFAKTEGTVTVFTHHHVREDAILL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++ F  L  V G+G RVA+G+L   +   +V +I  +N   + ++PGI  K 
Sbjct: 59  FGFPTREEQKLFRKLIEVSGIGPRVALGILGGGSPDHVVSAIYQENISFLIKLPGIGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K                 ++       S    A   L  LGY   +    
Sbjct: 119 AQRMILDLKDKLEGF-GNASMMTGLFAIQEPESDDGGSAWSEAREGLKALGYTDSELDKV 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
            + +     +      +++ AL+ +
Sbjct: 178 WLKIKDSGASGESVDVLMKRALQQL 202


>gi|116253728|ref|YP_769566.1| Holliday junction DNA helicase RuvA [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|122988385|sp|Q1MC53|RUVA_RHIL3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|115258376|emb|CAK09479.1| putative Holliday junction DNA helicase [Rhizobium leguminosarum
           bv. viciae 3841]
          Length = 204

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 92/206 (44%), Positives = 142/206 (68%), Gaps = 3/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + EDYVL+DV GVCY+ +C  RTLS LG  G+ C LF+ET++R+DQ++L
Sbjct: 1   MIGKLKGTIDEIGEDYVLVDVHGVCYVAHCSARTLSKLGSTGEACVLFIETYVREDQLKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF++ L+R+WF LLQSVQGVGA+VA+ VLS +   EL  +I LQ+   +++ PG+  K+
Sbjct: 61  FGFMTALEREWFNLLQSVQGVGAKVALAVLSTLPPGELANAIALQDRTAVSRAPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++TELK +A + +    + ++   K++       +   +A+SAL NLGY +DQA  A
Sbjct: 121 AMRLVTELKNRAPAFAG---EAINIGLKQELGEGVAAAPVADAVSALTNLGYSRDQAANA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + + +K     AD +++IRL L+ ++
Sbjct: 178 IAAAMKTAGEGADSAKLIRLGLKELA 203


>gi|291280036|ref|YP_003496871.1| Holliday junction DNA helicase RuvA [Deferribacter desulfuricans
           SSM1]
 gi|290754738|dbj|BAI81115.1| Holliday junction DNA helicase RuvA [Deferribacter desulfuricans
           SSM1]
          Length = 191

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 102/205 (49%), Gaps = 16/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G +     ++++++  G+ Y I   + T S L + G    +FV+  +++D I L
Sbjct: 1   MINYINGKLVFKKPEFIVLETFGIGYHINISLNTFSKLPEEGANLKIFVQQIVKEDSITL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + ++++F LL  V  VG ++A+ +LS     EL E I+ +N   +A IPGI  K 
Sbjct: 61  YGFFDEAEKEFFNLLIKVSKVGPKLALSILSGFNVDELKECIVSKNHIKLASIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K  ++  V +                     + +SAL+NLGY + +    
Sbjct: 121 AERIVLELKDKLDNVEVVSEDG-------------DVQILEDVVSALINLGYKKQECLKV 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++   + +      I++ AL+ +
Sbjct: 168 IKNI---DISKLRFEDILKEALKKL 189


>gi|326622940|gb|EGE29285.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 187

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 88/187 (47%), Gaps = 3/187 (1%)

Query: 18  LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQS 77
           L++  GV Y ++ P+     L + G    +F    +R+D   L+GF +  +R  F  L  
Sbjct: 2   LLETGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIK 61

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137
             GVG ++A+ +LS ++A + V ++  +    + ++PGI  K A R++ E+K +   L  
Sbjct: 62  TNGVGPKLALAILSGMSAQQFVNAVEREELGALVKLPGIGKKTAERLIVEMKDRFKGLHG 121

Query: 138 VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQI 197
            +      +        +       A++ALV LGY   +A+  V  + +     A    +
Sbjct: 122 DLFTPAVDLVLTSPASPTSEDAEQEAVAALVALGYKPQEASRMVSKIAR---PDASSETL 178

Query: 198 IRLALRA 204
           IR ALRA
Sbjct: 179 IRDALRA 185


>gi|116620084|ref|YP_822240.1| Holliday junction DNA helicase RuvA [Candidatus Solibacter usitatus
           Ellin6076]
 gi|122255537|sp|Q02AG7|RUVA_SOLUE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|116223246|gb|ABJ81955.1| Holliday junction DNA helicase RuvA [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 197

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 101/202 (50%), Gaps = 9/202 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +   + + VL++  GV Y +  P+ T + L  +G    L + TH+R+D + L
Sbjct: 1   MIALLRGLVVEKHPNQVLVETGGVGYDVTIPVSTFTKLPDLGGEVRLRIYTHVREDVLAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++  F  L SV G+G  +A+ +LS + A +L+ SI     + + ++PG+  K 
Sbjct: 61  YGFLTQDEKALFEKLISVSGIGPTLAVKILSGLAAADLILSIRRGEVEKLVKVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K  + +       +          ++     + +SAL+NLG  + QA  A
Sbjct: 121 AERMVLELRDKLPAATGEEPGAPAAE--------ALSPIDQDVLSALLNLGCARPQAEAA 172

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           V    K      D   + R AL
Sbjct: 173 VRKA-KAAGASLDFEPLFRRAL 193


>gi|254424412|ref|ZP_05038130.1| Holliday junction DNA helicase RuvA [Synechococcus sp. PCC 7335]
 gi|196191901|gb|EDX86865.1| Holliday junction DNA helicase RuvA [Synechococcus sp. PCC 7335]
          Length = 207

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 61/213 (28%), Positives = 99/213 (46%), Gaps = 14/213 (6%)

Query: 1   MIGKIKGNIEG--LYED---YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55
           MIG +KG +       +      ++  GV Y +    RTLS L ++G+   +F     R+
Sbjct: 1   MIGYVKGILADSQKLPNGRVIATVEAGGVGYDMQVNPRTLSQLPQVGEPVRIFTHLQSRE 60

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           D   LFGF S  +R  F LL SV G+G+++ M +L+ +   EL++S++  N++V+ + PG
Sbjct: 61  DLQMLFGFSSKAERDVFRLLISVSGIGSQMGMSLLNALGLNELIQSVVNGNARVLTRTPG 120

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           +  K A RI+ ELK K            S           + +   +    LV LGY   
Sbjct: 121 VGNKTAERIILELKTKLSEWR-------SHSGIVAPTGGPISAVQEDVEMMLVALGYSNS 173

Query: 176 QATTAVVSVLK--KEKNIADDSQIIRLALRAIS 206
           + + A+V+V          D    IR A+  +S
Sbjct: 174 EISKALVAVGNGTALSKSDDVEDWIREAIAWLS 206


>gi|171060623|ref|YP_001792972.1| Holliday junction DNA helicase RuvA [Leptothrix cholodnii SP-6]
 gi|229560097|sp|B1Y8E1|RUVA_LEPCP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|170778068|gb|ACB36207.1| Holliday junction DNA helicase RuvA [Leptothrix cholodnii SP-6]
          Length = 191

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 94/205 (45%), Gaps = 16/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L+DV GV Y +  P+ T   L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLTGTLAEKSPPQLLVDVGGVGYEVDVPMSTFYNLPVLGERVTLLTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  + GVGAR A+ +LS ++  +L +++  Q +  + ++PGI  K 
Sbjct: 61  YGFLTATERATFRQLLKISGVGARTALSILSGLSVADLAQAVSAQEAGRLVKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R              +  +     +              + + AL+ LGY + +A  A
Sbjct: 121 AER------------LLLELKGKLGPDLALPGAVIRNEAQSDIVQALIALGYNEREAAAA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +    K        S  I+LALRA+
Sbjct: 169 I----KPLPADVGVSDGIKLALRAL 189


>gi|126725530|ref|ZP_01741372.1| Holliday junction DNA helicase motor protein [Rhodobacterales
           bacterium HTCC2150]
 gi|126704734|gb|EBA03825.1| Holliday junction DNA helicase motor protein [Rhodobacterales
           bacterium HTCC2150]
          Length = 221

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 80/219 (36%), Positives = 119/219 (54%), Gaps = 14/219 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGKI G  +    D+VLIDV+GV YI+YC  RTLS L   G   +L+ E  +R+D ++L
Sbjct: 1   MIGKITGIQDMRGTDHVLIDVRGVGYIVYCSDRTLSALPGKGQAVSLYTELLVREDNLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++W  LL SVQG+GA+ +M +L  + A  +  +I L ++  I   PG+  KI
Sbjct: 61  FGFTTLFEKEWHKLLISVQGIGAKASMAILGTLGAEGVGRAITLGDATAIKAAPGVGPKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQ-------------DMSCVNKEQAHICSMPSFAINAISAL 167
           A R++ ELK KA ++ ++                D+     ++A          +A+SAL
Sbjct: 121 AQRVVLELKNKAPAIMALGGSLDEATGSVAAEPDDILIEAPQKAKTSPDAVAQSDALSAL 180

Query: 168 VNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
            NLGYG   A  AV  V   E   AD   +IR AL+ ++
Sbjct: 181 TNLGYGPSDAAMAVAEV-AGEMADADAGALIRAALQRLA 218


>gi|153003861|ref|YP_001378186.1| Holliday junction DNA helicase RuvA [Anaeromyxobacter sp. Fw109-5]
 gi|166229629|sp|A7H906|RUVA_ANADF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|152027434|gb|ABS25202.1| Holliday junction DNA helicase RuvA [Anaeromyxobacter sp. Fw109-5]
          Length = 197

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 100/205 (48%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +     D+V++DV GV Y+++    +L+ L   G   TL + T++RQD I L
Sbjct: 1   MIARLAGKVAEKGADHVVLDVGGVGYLVHLSAVSLAGLPPQGGDGTLRIFTNVRQDAIEL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +   F  L  V+GVG R A  +LS I A EL +++   +   + ++PGI  K 
Sbjct: 61  YGFASEDEEAVFRALIDVKGVGPRAAQNILSGIDARELAQAVAGSDVARLTKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K   L+              A              ALVNLGY   QA  A
Sbjct: 121 AERLVVELKEKLALLARAAGP---------ARAKPGAGVVEQLRQALVNLGYKPPQADAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
               L+ E       +++R AL+ +
Sbjct: 172 -ADALRDEAEGKKLDELLREALKRL 195


>gi|94677012|ref|YP_588762.1| Holliday junction DNA helicase RuvA [Baumannia cicadellinicola str.
           Hc (Homalodisca coagulata)]
 gi|123081488|sp|Q1LTF2|RUVA_BAUCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|94220162|gb|ABF14321.1| Holliday junction DNA helicase RuvA [Baumannia cicadellinicola str.
           Hc (Homalodisca coagulata)]
          Length = 196

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 56/203 (27%), Positives = 99/203 (48%), Gaps = 10/203 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       +L+++ G+ Y I  P+   S L  IG    L+    +R+D   L
Sbjct: 1   MIGRLRGIILEKQPPLLLLEINGIGYEIAIPMNNFSLLPAIGQETILYTHCIVREDTELL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+   D   F  L  + GVG ++A+ +L+ ++  + + +I      ++ ++PG+  K 
Sbjct: 61  FGFIKKPDMILFRALIKINGVGPKLALAILAGMSEKQFLSAIEHNEIHMLTKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K K    S  +    +           +    I AI+AL++LGY   +A+  
Sbjct: 121 AERLVIEMKDKLKGTSKSLFSLATIG-------EGLAKTEIEAITALISLGYTHQEASKM 173

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  V  +    A+   +IR ALR
Sbjct: 174 VKKVAIE---GANCETLIRDALR 193


>gi|291513714|emb|CBK62924.1| Holliday junction DNA helicase subunit RuvA [Alistipes shahii WAL
           8301]
          Length = 193

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 97/205 (47%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y +IDV GV Y ++  + T S + +      L+V   +R+D   L
Sbjct: 1   MYEYIKGTVAEVAPAYAVIDVGGVGYYLHISLETYSAI-EHETETRLYVHYVVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F LL SV GVG   A  +LS  +  EL   I   N+ ++  + G+ +K 
Sbjct: 60  YGFSTKAERELFRLLISVSGVGGNTARMILSTYSPRELQGIITAGNAVLLKNVKGLGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ EL GK           M+    +             A++AL  LG+ +  A   
Sbjct: 120 AQKIIVELSGKL----------MAPGADDGGAQPGAGGSFDEALAALSMLGFARAPAEKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VL++    A   ++IR+AL+ +
Sbjct: 170 LRGVLRESP-AAPVEELIRMALKKL 193


>gi|241206204|ref|YP_002977300.1| Holliday junction DNA helicase RuvA [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240860094|gb|ACS57761.1| Holliday junction DNA helicase RuvA [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 204

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 94/206 (45%), Positives = 144/206 (69%), Gaps = 3/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + EDYVL+DV GVCY+ +C  RTLS LG  G+ C LF+ET++R+DQ++L
Sbjct: 1   MIGKLKGTIDEIGEDYVLVDVHGVCYVAHCSARTLSKLGSAGEACVLFIETYVREDQLKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF++ L+R+WF LLQSVQGVGA+VA+ VLS +T  EL  +I LQ+   +++ PG+  K+
Sbjct: 61  FGFMTALEREWFNLLQSVQGVGAKVALAVLSTLTPGELANAIALQDRTAVSRAPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++TELK +A + +    + ++   K++       +   +A+SAL NLGY +DQA  A
Sbjct: 121 AMRLVTELKNRAPAFAG---EAINIALKQELGEGVAAAPVADAVSALTNLGYSRDQAANA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + +K   + AD +++IRL L+ ++
Sbjct: 178 VAAAMKTAGDNADSAKLIRLGLKELA 203


>gi|330996011|ref|ZP_08319905.1| Holliday junction DNA helicase RuvA [Paraprevotella xylaniphila YIT
           11841]
 gi|329574008|gb|EGG55586.1| Holliday junction DNA helicase RuvA [Paraprevotella xylaniphila YIT
           11841]
          Length = 200

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 97/205 (47%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG I  L     ++D  GV Y +   + T S L +      L+V   +R+D   L
Sbjct: 1   MIEYVKGQIAELTPATAVVDCHGVGYGLNISLNTFSAL-QGKQEAKLYVYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F+LL SV G+G   A  +LS +T  ELV  I   N K++  + GI +K 
Sbjct: 60  YGFSTRQERALFLLLISVSGIGGNTARMILSALTPAELVNVISSGNDKLLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K  S+                           A++AL  LG+    +   
Sbjct: 120 AQRIIVDLKDKIASVEIEGTASPGTSATM---ATGHSEILEEAVAALTMLGFPPAPSQKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
            +++LK+E   A   ++I+LAL+ +
Sbjct: 177 ALAILKEEPEAA-VERVIKLALKRL 200


>gi|325954455|ref|YP_004238115.1| Holliday junction ATP-dependent DNA helicase ruvA [Weeksella virosa
           DSM 16922]
 gi|323437073|gb|ADX67537.1| Holliday junction ATP-dependent DNA helicase ruvA [Weeksella virosa
           DSM 16922]
          Length = 193

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +  ++  Y ++D  GV Y +   + T S L  I +  TL+ +  +R D   L
Sbjct: 1   MITQLRGRLVEVHPSYAVVDCNGVGYWVNISLNTYSSLV-IDEVITLYTQQIIRDDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L SV GVG   AM +LS ++  E+  +I  +++K++  + GI  K 
Sbjct: 60  YGFNTIEERSIFQKLISVNGVGPASAMMMLSTLSPKEIQTAIYTEDAKLLQSVKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K   ++      +   NK            I A+SAL  LG  +  A   
Sbjct: 120 AQRIIIDLKDKLEEINLEDVNSLPHKNKT----------RIEALSALEVLGIPRKVAEKT 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VL K  + A    +++  L+ +
Sbjct: 170 IDQVLDKNAD-ATVETLVKETLKKL 193


>gi|148555055|ref|YP_001262637.1| Holliday junction DNA helicase RuvA [Sphingomonas wittichii RW1]
 gi|166200267|sp|A5V883|RUVA_SPHWW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|148500245|gb|ABQ68499.1| Holliday junction DNA helicase RuvA [Sphingomonas wittichii RW1]
          Length = 199

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 72/206 (34%), Positives = 116/206 (56%), Gaps = 8/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +     D+ ++DV GV Y+++C  RTLS +G+ G    LF E  +R+D I L
Sbjct: 1   MIARLRGVLAETSADHAVLDVGGVGYLVWCSARTLSAIGETGGDVLLFTEMQVREDAITL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F LL SVQGVG RVA+ +LS + A EL  ++   +  +IA+  G+  K+
Sbjct: 61  YGFGSAGERDSFRLLTSVQGVGGRVALAILSVLDAGELSRAVAGGDKAMIARANGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K   ++       +   K           + +A+SAL NLG+   +A+ A
Sbjct: 121 AMRIVNELKDKMGGVALGPGLGAAPAAK--------GGVSTDALSALANLGFRPAEASAA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + +++  + A    ++RLALR  +
Sbjct: 173 VGAAIEELGDGATLDAVVRLALRKAA 198


>gi|189468525|ref|ZP_03017310.1| hypothetical protein BACINT_04928 [Bacteroides intestinalis DSM
           17393]
 gi|189436789|gb|EDV05774.1| hypothetical protein BACINT_04928 [Bacteroides intestinalis DSM
           17393]
          Length = 201

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 106/205 (51%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  L     +ID  G+ Y +   + T + + +    C L++   +R+D   L
Sbjct: 1   MIEYIRGGLAELSPATAVIDCNGLGYAVNISLNTYAAI-QGKKECKLYIYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F+LL SV G+G   A  +LS ++  ELV  I  +N+ ++  + GI +K 
Sbjct: 60  YGFADKQERELFLLLISVSGIGGNTARMILSALSPAELVNVISTENANLLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K  + ++     +  +    +   +       AI+AL  LG+ Q  +   
Sbjct: 120 AQRVIVDLKDKIKTGTASAGSTIGSLGGMLS--AANAQVQEEAIAALTMLGFAQAPSQKV 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+++LK E + A   Q+I+LAL+ +
Sbjct: 178 VLAILKDEPD-APVEQVIKLALKRL 201


>gi|28198789|ref|NP_779103.1| Holliday junction DNA helicase motor protein [Xylella fastidiosa
           Temecula1]
 gi|182681488|ref|YP_001829648.1| Holliday junction DNA helicase RuvA [Xylella fastidiosa M23]
 gi|32130012|sp|Q87D02|RUVA_XYLFT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560141|sp|B2I4S9|RUVA_XYLF2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|28056880|gb|AAO28752.1| holliday junction binding protein, DNA helicase [Xylella fastidiosa
           Temecula1]
 gi|182631598|gb|ACB92374.1| Holliday junction DNA helicase RuvA [Xylella fastidiosa M23]
 gi|307579942|gb|ADN63911.1| Holliday junction DNA helicase RuvA [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 194

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 53/203 (26%), Positives = 90/203 (44%), Gaps = 13/203 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      ++++DV GV Y +  P+ T   L  +G    LF     + D   L
Sbjct: 1   MIGRLRGVLTSKTPPWLVVDVCGVGYELEVPMSTFCELPDVGYEVNLFTHYTQKDDSAAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS+ +R+ F  LQ V G+G ++A+ +LS ++       I   ++  +  IPG+  K 
Sbjct: 61  YGFLSESERRLFRHLQRVSGIGTKIALAILSSVSVDTFAGLIQAGDANALTVIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +A   +          N               A  AL  LGY   +A   
Sbjct: 121 AERMLVELRDRAADFN----------NGISTSGKLNLDTVSEAALALQQLGYKPAEAARM 170

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
                       D + +I+ AL+
Sbjct: 171 ARDA---GTESDDVAIVIKKALQ 190


>gi|254294768|ref|YP_003060791.1| Holliday junction DNA helicase RuvA [Hirschia baltica ATCC 49814]
 gi|254043299|gb|ACT60094.1| Holliday junction DNA helicase RuvA [Hirschia baltica ATCC 49814]
          Length = 209

 Score =  155 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 72/208 (34%), Positives = 113/208 (54%), Gaps = 3/208 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++KG +    +   LIDV GV Y+++C  RTL+ L  IG   T+FVET M ++ I+L
Sbjct: 1   MIARLKGIVAATGDGQALIDVNGVGYVLFCGGRTLARL-TIGRENTVFVETQMSENAIKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  DR WF  LQ   GVGA+ A+ +L  +T  +L+++I+L ++  + +  G+  K+
Sbjct: 60  YGFETAEDRAWFSRLQDAPGVGAKAALNILDALTPAQLMDAIVLGDAASVQRAHGVGKKL 119

Query: 121 ASRIMTELKGKAI--SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R+++E K K     L SV       V    +   +       A SAL NLGY    A 
Sbjct: 120 AERVVSEFKDKPPPAGLFSVSFAPSEGVEGLASTSTASTGSRAAAASALTNLGYQNVDAQ 179

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
            AV    K+    A +  +I+ AL+A++
Sbjct: 180 RAVAVAAKELGEDASEGALIKAALKALA 207


>gi|91789933|ref|YP_550885.1| Holliday junction DNA helicase RuvA [Polaromonas sp. JS666]
 gi|123164397|sp|Q124Q5|RUVA_POLSJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|91699158|gb|ABE45987.1| Holliday junction DNA helicase RuvA [Polaromonas sp. JS666]
          Length = 190

 Score =  155 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 93/206 (45%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       VL+D  GV Y +  P+ T   L  +G+  +L     +R+D   L
Sbjct: 1   MIGRISGQLAEKNPPEVLVDCNGVGYEVLVPMSTFYNLPGLGEKVSLLTHFVVREDAQIL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L  + GVG R A+ VLS ++  EL +++  Q +  I ++PGI  K 
Sbjct: 61  YGFGSATERAAFRQLIKISGVGPRTALSVLSGMSVEELAQAVTHQEAGRIIKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R              +++            +        + + ALV LGY    A  A
Sbjct: 121 AER-------------LLLELKGKLGADIGVQVSVSSDSQSDILQALVALGYSDRDAALA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + ++ K        S  I+LAL+A++
Sbjct: 168 LKALPKDIG----VSDGIKLALKALA 189


>gi|332878042|ref|ZP_08445772.1| Holliday junction DNA helicase RuvA [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332684004|gb|EGJ56871.1| Holliday junction DNA helicase RuvA [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 200

 Score =  155 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 100/205 (48%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG I  L     +ID  GV Y +   + T S L +      L+V   +R+D   L
Sbjct: 1   MIEYVKGQIAELTPAIAVIDCHGVGYGLNISLNTFSAL-QGKQEAKLYVYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F+LL SV G+G   A  +LS +T  ELV  I   N K++  + GI +K 
Sbjct: 60  YGFSTRQERALFLLLISVSGIGGNTARMILSALTPAELVNVISSGNDKLLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K    +SV  +  +                  A++AL  LG+    +   
Sbjct: 120 AQRIIVDLKDKI---ASVEIEGTAAPGTSATAATGHSEILEEAVAALTMLGFPPAPSQKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
            +++LK+E   A   ++I+LAL+ +
Sbjct: 177 ALAILKEEPEAA-VERVIKLALKRL 200


>gi|198277641|ref|ZP_03210172.1| hypothetical protein BACPLE_03864 [Bacteroides plebeius DSM 17135]
 gi|198269338|gb|EDY93608.1| hypothetical protein BACPLE_03864 [Bacteroides plebeius DSM 17135]
          Length = 198

 Score =  155 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 102/205 (49%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +      +V+++  G+ Y I   + T S + +      L++   +R+D   L
Sbjct: 1   MIEYIKGELVDATPAWVVVECNGLGYGINVSLNTYSAV-QGKKEVKLYIYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F+LL SV G+G   A  +LS ++ +EL   I   N K++  + GI +K 
Sbjct: 60  YGFATRQERELFLLLISVSGIGGNTARMILSALSPSELCNVIGSGNDKLLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K       V    S    +   + +       A++AL  LG+ Q  +   
Sbjct: 120 AQRIIVELKDKI-----AVTGIESAATVKSVAVAANTEIYEEAVAALTMLGFAQAPSQKV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +LK+E + A   ++I+LAL+ +
Sbjct: 175 TAQILKEEPD-APVEKVIKLALKRL 198


>gi|21673101|ref|NP_661166.1| Holliday junction DNA helicase RuvA [Chlorobium tepidum TLS]
 gi|25453273|sp|Q8KFR0|RUVA_CHLTE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|21646174|gb|AAM71508.1| Holliday junction DNA helicase RuvA [Chlorobium tepidum TLS]
          Length = 201

 Score =  155 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 54/202 (26%), Positives = 103/202 (50%), Gaps = 8/202 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G +  +  +  +++V G+ Y+++    T   L   G    LF   ++R+D  +L
Sbjct: 1   MFAFLRGELVTVSREEAVVEVSGIGYLLHISSGTSRRLPPEGSQVRLFTHHYVREDAQQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL + + Q F LL ++ GVG ++AM VLS ++  E+ E+I+    + +  I G+  K 
Sbjct: 61  FGFLDEEELQLFRLLLTIGGVGPKLAMAVLSGLSVGEIQEAIVANRPETLYGITGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ EL+ K + +           + + A          +A++AL+ LG+ +  A  A
Sbjct: 121 ASRIILELRDKILKIQP-------AASGKTAGAPQALQLNEDALAALMTLGFPKPAAQKA 173

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           +  +L+    +    +++R AL
Sbjct: 174 ISGILETSPGL-SVEEVVRAAL 194


>gi|114771193|ref|ZP_01448613.1| Holliday junction DNA helicase motor protein [alpha proteobacterium
           HTCC2255]
 gi|114548118|gb|EAU51005.1| Holliday junction DNA helicase motor protein [alpha proteobacterium
           HTCC2255]
          Length = 225

 Score =  155 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 120/222 (54%), Gaps = 17/222 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGKI G ++    D+VL+DVQGV Y++YC  RTLS L   G    L+ +  +R+D ++L
Sbjct: 1   MIGKITGRVDYRGTDHVLVDVQGVGYMVYCSERTLSGLPSRGGIVALYTDLLVREDNLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  D++W  LL +VQGVGA+ A+ + S +    + ++I L +   I    GI  KI
Sbjct: 61  FGFTTLADKEWHKLLTTVQGVGAKAALAIASTLGTDGVSKAIALGDVNAIKSAQGIGPKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI----------------CSMPSFAINAI 164
           A R++TELK KA  + ++  +  + V  +++ +                 S  S   +A+
Sbjct: 121 AQRVITELKDKAPKIMAMGGEGSAVVEADESMVIDVQTPVDTPVKNQNRKSEASAQADAL 180

Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           SAL+NLGY    A  A+  V  +  +      II+ AL+ ++
Sbjct: 181 SALINLGYAHGDAAGAIAQVTSEIPSSISTE-IIKAALKLLA 221


>gi|332968271|gb|EGK07345.1| crossover junction ATP-dependent DNA helicase RuvA [Kingella kingae
           ATCC 23330]
          Length = 188

 Score =  155 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 55/197 (27%), Positives = 93/197 (47%), Gaps = 12/197 (6%)

Query: 9   IEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLD 68
           +       ++IDV GV Y +   ++T   L  +G+   L+    +R+D   LFGF    +
Sbjct: 2   LLEKMPPQIVIDVNGVGYELDVSMQTFYALPALGETVQLYTYLVVREDAHLLFGFGDASE 61

Query: 69  RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
           R  F  L  V G+GA+ A+G+LS +T  EL ++I  ++ K ++  PGI  K A R++ EL
Sbjct: 62  RTTFRQLIKVSGIGAKTALGILSAMTTDELAQAIANEDVKRLSSAPGIGKKTAERMILEL 121

Query: 129 KGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKE 188
           +GK               +       +      + +S L+ LGY + +A  A     K  
Sbjct: 122 RGKL--------AHRGLGDLALFTPAADTDNRADVVSTLLALGYSEREAQAA----CKSL 169

Query: 189 KNIADDSQIIRLALRAI 205
            N  +  + +RLAL+ +
Sbjct: 170 PNGVEVGEGVRLALKQL 186


>gi|83954484|ref|ZP_00963195.1| Holliday junction DNA helicase motor protein [Sulfitobacter sp.
           NAS-14.1]
 gi|83840768|gb|EAP79939.1| Holliday junction DNA helicase motor protein [Sulfitobacter sp.
           NAS-14.1]
          Length = 222

 Score =  155 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 71/220 (32%), Positives = 115/220 (52%), Gaps = 15/220 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGKI G I+    D++LIDV+GV Y++YC  RT++ L  +G+   LF +  +R+D ++L
Sbjct: 1   MIGKITGRIDYRAPDHLLIDVRGVGYLVYCSDRTMAALPGVGEVVALFTDLVVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++W  LL SVQGVGA+ ++ +L  +    +  +I L +   +    G+  KI
Sbjct: 61  FGFQTLAEKEWHRLLTSVQGVGAKASLAILGALGPDGVSRAIALGDWNAVKVAKGVGPKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAH--------------ICSMPSFAINAISA 166
           A R++ +LK KA  + ++         + +A                    S    A+SA
Sbjct: 121 AQRVVLDLKDKAPGVMAMTGSLAEAHGEVEAAAEVIETAAPKRRPVAPPNQSAQAEALSA 180

Query: 167 LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           L NLGYG   A  AV     +    A+  Q+IR AL+ ++
Sbjct: 181 LGNLGYGPGDAAGAVAQAAGEMPE-AETPQLIRAALKLLA 219


>gi|260587811|ref|ZP_05853724.1| holliday junction DNA helicase RuvA [Blautia hansenii DSM 20583]
 gi|331083813|ref|ZP_08332922.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260542076|gb|EEX22645.1| holliday junction DNA helicase RuvA [Blautia hansenii DSM 20583]
 gi|330403238|gb|EGG82798.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 203

 Score =  155 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 103/205 (50%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG I  + ED V+++   + Y ++ P+  +  + + GD   ++   ++R+D ++L
Sbjct: 1   MIAYLKGEIVEILEDRVILEAGNIGYNLFMPMAGVDGVLRTGDETKIYTYLNVREDAMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  D   F LL  V G+G + A+GVLS ++A EL  +++  + K I++ PGI  K 
Sbjct: 61  YGFLTKDDLNVFKLLLGVNGIGPKAALGVLSGLSADELRFAVLADDVKTISKAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK K  SL          V +    +  +      A+ AL  LGY    A  A
Sbjct: 121 AQKLILELKDKM-SLQEAFDLKSEHVQESAGSLSDVSDIKKEAVEALTALGYSGADALRA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V     +         +++ AL+ +
Sbjct: 180 VKH--TEITEGMSVEDLLKQALKNM 202


>gi|262341131|ref|YP_003283986.1| Holliday junction DNA helicase RuvA [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272468|gb|ACY40376.1| Holliday junction DNA helicase RuvA [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 196

 Score =  155 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 97/206 (47%), Gaps = 11/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI  ++G +    + Y++ID  GV Y I+  + T S L  + G    +     ++ +Q  
Sbjct: 1   MITHLRGKLIEKNQSYLIIDCHGVGYHIHISLYTHSSLLEEEGKDICIHTYLFIKDNQHV 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF   ++R+ F  L SV G+G   A+ +LS +T  E+ +SI  ++ K   ++ GI  K
Sbjct: 61  LYGFFDKIERKIFSYLISVNGIGPSSAIMLLSSLTPYEIEKSISKEDIKAFDKVKGIGTK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ ELK K                K+  +  +  S    A+SAL  LG+   ++  
Sbjct: 121 TAQRIIIELKDKFTK---------EIFYKKVKNENTPYSIKKEALSALSVLGFSTKESKK 171

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            +  +L +         +I+ +L+ +
Sbjct: 172 ILDDILNEHPEF-SVENLIKESLKKL 196


>gi|172040615|ref|YP_001800329.1| Holliday junction DNA helicase RuvA [Corynebacterium urealyticum
           DSM 7109]
 gi|229560025|sp|B1VDJ7|RUVA_CORU7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|171851919|emb|CAQ04895.1| ruvA [Corynebacterium urealyticum DSM 7109]
          Length = 206

 Score =  155 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 108/206 (52%), Gaps = 4/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G++     DYV+I+  GV Y       TL+ L + G+   +     +R D   L
Sbjct: 1   MISSLRGDVIDKGLDYVVIECGGVGYRCLATGDTLATL-RRGESAFVLTSLVIRDDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           + F +   R+ F +LQ V GVGAR+AMGV+S +   ++  ++   + K + Q PG+  ++
Sbjct: 60  YAFSTSEQRETFGILQKVSGVGARLAMGVMSVLQPADIARAVEEGDIKTLQQAPGVGKRL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+  +LKGK  +L +   Q       + A   +  +     + ALV LG+ + +A TA
Sbjct: 120 AERMAVDLKGKFPALEATSGQ---ATIGDIAATGNDTALQSQVVEALVGLGFTEAKAATA 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  +L+++    D S ++R AL+ +S
Sbjct: 177 VKKILEEQNGTTDPSSVLREALQRLS 202


>gi|85703560|ref|ZP_01034664.1| Holliday junction DNA helicase motor protein [Roseovarius sp. 217]
 gi|85672488|gb|EAQ27345.1| Holliday junction DNA helicase motor protein [Roseovarius sp. 217]
          Length = 219

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 72/217 (33%), Positives = 115/217 (52%), Gaps = 12/217 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G I+    D+VLIDV+GV Y++YC  RTLS L  +G    L+ +  +R+D ++L
Sbjct: 1   MIGRIAGRIDYRGTDHVLIDVRGVGYLVYCSERTLSALPGVGGMAALYTDLLVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++W  LL SVQGVGA+ ++ +L  +    +  +I + +   +    GI  K 
Sbjct: 61  FGFPTLVEKEWHRLLMSVQGVGAKASLAILGALGPEGVGRAIAIGDWHSVTAAKGIGAKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQ-----------AHICSMPSFAINAISALVN 169
           A R++ ELK KA  + ++        +  +            H  + P     A+SAL N
Sbjct: 121 AQRVVNELKDKAPLIMAMGAAPPPAQDAGEVIETGPIQIAPVHAPTDPGAQAEALSALTN 180

Query: 170 LGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           LGY   +A  AV  V  +    A  + +IR ALR ++
Sbjct: 181 LGYSPGEAAGAVAQVAGEMPEAA-TADLIRAALRRLA 216


>gi|163942171|ref|YP_001647055.1| Holliday junction DNA helicase motor protein [Bacillus
           weihenstephanensis KBAB4]
 gi|229560002|sp|A9VIP7|RUVA_BACWK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|163864368|gb|ABY45427.1| Holliday junction DNA helicase RuvA [Bacillus weihenstephanensis
           KBAB4]
          Length = 205

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 95/205 (46%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +E +  +YV+ID  G+ Y I+ P        +      ++   ++R+D + L
Sbjct: 1   MFEYVTGYVEYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMAL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K 
Sbjct: 59  YGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   +      D+    +              A+ AL  LGY + + +  
Sbjct: 119 ARQMILDLKGKLADVVPDAFVDLFSDTESFDTKKGSSVELDEALEALRALGYAEREVSRV 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +LK+        Q I+ AL  +
Sbjct: 179 VPELLKE---SLTTDQYIKKALSLL 200


>gi|110801789|ref|YP_699225.1| Holliday junction DNA helicase RuvA [Clostridium perfringens SM101]
 gi|122956588|sp|Q0SRN2|RUVA_CLOPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|110682290|gb|ABG85660.1| Holliday junction DNA helicase RuvA [Clostridium perfringens SM101]
          Length = 201

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 106/205 (51%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I+G  +G+ +DYV+I++  + Y I+    T+S + K+GD   L++E  +R+D I L
Sbjct: 1   MYEYIRGQFQGISKDYVVIELNNIGYRIFTSGNTMSNMPKVGDEVLLYLEQIVREDFIGL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  + + F LL S+ GVGA+ A+ +LS  T   L  +I++ + K I + PGI  K 
Sbjct: 61  YGFTTKEELEMFKLLLSINGVGAKAALSLLSISTVNNLKYAIMMGDEKHITRAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K        +++            S        +SAL+ LGY + +A  A
Sbjct: 121 AQRIILELKDKLKPDELTSEEEQLIEGINDNSDYSFN--INETLSALMALGYTEKEAQKA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  V K          +I+ +L+ +
Sbjct: 179 LEKVDKTL----SIENMIKESLKLL 199


>gi|269797654|ref|YP_003311554.1| Holliday junction DNA helicase RuvA [Veillonella parvula DSM 2008]
 gi|269094283|gb|ACZ24274.1| Holliday junction DNA helicase RuvA [Veillonella parvula DSM 2008]
          Length = 202

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 110/205 (53%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +  L+++   +DV GV Y +Y P  T   L + G   TLF   ++R+D ++L
Sbjct: 1   MIGYVRGIVTHLFKESCYVDVHGVGYRVYVPTTTRQQLTE-GHEATLFTYLNVREDAMQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ + + F+LL SV G+G +V +G+LS +T      +II    + + ++PGI  K 
Sbjct: 60  YGFWTEEEYELFILLISVSGIGPKVGLGILSGMTPEAFKLAIINGQVQQLTKLPGIGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K   ++ +  +  + +             A  AI ALV+LGY +      
Sbjct: 120 AERLVLELKDKIAKMTHISAESPAAIQPIGVTA---SGAAGEAIEALVSLGYSERDVADI 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V S+   +    D S++I+++L  +
Sbjct: 177 VESL---DDGKRDVSELIKVSLIEL 198


>gi|329903093|ref|ZP_08273367.1| Holliday junction DNA helicase RuvA [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548502|gb|EGF33171.1| Holliday junction DNA helicase RuvA [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 192

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 105/206 (50%), Gaps = 16/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L+D  GV Y +   + T   L  +G+   L  +  +R+D   L
Sbjct: 1   MIGRLSGTLLEKNPPQLLVDCHGVGYEVGVSMSTFYNLPALGEKIVLLTQQIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L  + GVG R+A+ +LS ++  EL ++I LQ +  + ++PG+  K 
Sbjct: 61  FGFGTAEERNVFRQLIKIAGVGPRMALAILSGMSVAELAQAITLQETGRLTKVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK  +   +V               ++P  + + ++AL+ LGY   +A  A
Sbjct: 121 AERLLLELKGKLGADLGIVGG------------VALPDGSGDILNALLALGYSDKEAMLA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  V       +  S  I+LAL+A+S
Sbjct: 169 MKQV----PAGSGVSDGIKLALKALS 190


>gi|227529693|ref|ZP_03959742.1| crossover junction endoribonuclease subunit A [Lactobacillus
           vaginalis ATCC 49540]
 gi|227350359|gb|EEJ40650.1| crossover junction endoribonuclease subunit A [Lactobacillus
           vaginalis ATCC 49540]
          Length = 200

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 96/206 (46%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +  +   Y++++V G+ Y +         + K     T++V   +R D I L
Sbjct: 1   MYEYLTGLVTVVEPRYIVVEVNGIGYRLLVANPYRYHIDKR-QKVTVYVYQAVRDDDISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF  + ++Q FM L +V G+G + A+ +L+      L+ +I   + K + + PGI  K 
Sbjct: 60  FGFSDEDEKQLFMQLINVSGIGPKSALAILANPDHEGLINAIANNDVKYLTRFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I  +LK K   L+      +  +        ++     +A+ AL  LGY + +    
Sbjct: 120 ASQICLDLKDKIERLAPSESNLLKPL---LPENENVNDALQDALEALTALGYKEREVKR- 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +   L+KE       + +R ALR ++
Sbjct: 176 IKKELEKEGE-TSTEEYLRHALRLLN 200


>gi|319903005|ref|YP_004162733.1| Holliday junction DNA helicase subunit RuvA [Bacteroides helcogenes
           P 36-108]
 gi|319418036|gb|ADV45147.1| Holliday junction DNA helicase subunit RuvA [Bacteroides helcogenes
           P 36-108]
          Length = 200

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 105/205 (51%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I  L     +ID  G+ Y +   + T + + +    C L++   +R+D   L
Sbjct: 1   MIEYIKGEIAELSPATAVIDCNGLGYAVNISLNTYAAV-QGKKECKLYIYEAIREDAYIL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F+LL SV G+G   A  +LS ++ +EL+  I  +N+ ++  + GI +K 
Sbjct: 60  YGFADKQERELFLLLISVSGIGGNTARMILSALSPSELINVISTENANLLKSVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K     +      S  +     + +       A++AL  LG+ Q  +   
Sbjct: 120 AQRVIVDLKDKIK---TDSVATGSAGDMTSLLMAANTQVQEEAVAALTMLGFAQAPSQKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+++LK+  N A   Q+I+LAL+ +
Sbjct: 177 VLAILKENPN-APVEQVIKLALKRL 200


>gi|119716613|ref|YP_923578.1| Holliday junction DNA helicase subunit RuvA [Nocardioides sp.
           JS614]
 gi|166230576|sp|A1SJA6|RUVA_NOCSJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|119537274|gb|ABL81891.1| Holliday junction DNA helicase subunit RuvA [Nocardioides sp.
           JS614]
          Length = 200

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 8/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +     +++V GV   I C   TL+ L ++G    L     +R+D + L
Sbjct: 1   MIAFVRGQVAAVTLSSAVLEVGGVGLDIMCTPGTLATL-RVGQQAALPTSMVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF  + ++Q F LLQ+  GVG ++A  +L+ ++  +L  +I   + K + ++PGI  K 
Sbjct: 60  FGFADEDEKQTFELLQTASGVGPKLAQAMLAVLSTDDLRLAITGDDVKTLTRVPGIGQKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL+ +                       +   +       LV LG+    A  A
Sbjct: 120 AQRIILELRDRI-------GAPTGAGRSAGVPAPAGAVWRDQVHQGLVGLGWPVRDAEKA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V +V  +  ++ D + ++R ALR +S
Sbjct: 173 VAAVAPEAGDVPDVAALLRAALRTLS 198


>gi|329961622|ref|ZP_08299681.1| Holliday junction DNA helicase RuvA [Bacteroides fluxus YIT 12057]
 gi|328531614|gb|EGF58448.1| Holliday junction DNA helicase RuvA [Bacteroides fluxus YIT 12057]
          Length = 200

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 105/205 (51%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G I  L     +ID  G+ Y +   + T + + +    C L++   +R+D   L
Sbjct: 1   MIEYIRGGIAELSPATAVIDCNGLGYAVNISLNTYAAI-QGKKECKLYIYEAIREDAYIL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F+LL SV G+G   A  +LS ++ +ELV  I  +N+ ++  + GI +K 
Sbjct: 60  YGFADKQERELFLLLISVSGIGGNTARMILSALSPSELVNVISTENANLLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K  + S+      +          +       A++AL  LG+ Q  +   
Sbjct: 120 AQRVIVDLKDKIKTGSAAAGDTGTIGG---LLTAANAQIQEEAVAALTMLGFAQAPSQKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+ +LK++ + A   Q+I+LAL+ +
Sbjct: 177 VLGILKEDPD-ASVEQVIKLALKRL 200


>gi|238792583|ref|ZP_04636216.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia
           intermedia ATCC 29909]
 gi|238728218|gb|EEQ19739.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia
           intermedia ATCC 29909]
          Length = 188

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 52/188 (27%), Positives = 92/188 (48%), Gaps = 4/188 (2%)

Query: 18  LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQS 77
           L++  GV Y +  P+     L  +G    +F +  +R+D   L+GF    +R  F  L  
Sbjct: 2   LLETNGVGYEVQLPMTCFYELPDLGQEAIIFTQFVVREDAQLLYGFNDKQERALFRELIK 61

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137
           V GVG ++A+ +LS ++A + V ++  ++   + ++PG+  K A R++ E+K +   L+ 
Sbjct: 62  VNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKTAERLVVEMKDRFKGLNG 121

Query: 138 VVQQDMSCVN-KEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQ 196
            +  +   +     +   S       A SALV LGY   +A+  V  + K     AD   
Sbjct: 122 DLFNNTGDIQLPASSSQTSDADIEAEAASALVALGYKPQEASRLVSKIAK---PGADCET 178

Query: 197 IIRLALRA 204
           +IR ALR+
Sbjct: 179 LIRDALRS 186


>gi|291458999|ref|ZP_06598389.1| holliday junction DNA helicase RuvA [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291418253|gb|EFE91972.1| holliday junction DNA helicase RuvA [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 203

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 98/206 (47%), Gaps = 4/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  L E  VL++  G+ Y I  P   L  L   G+   +     +R+D + L
Sbjct: 1   MIRYVRGILRELREGMVLVEAGGLGYGIRVPASLLPALPPPGEEVKIHTYFSVREDAMEL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  DR  F+ L  V G+G + A+G+LS +   EL  +I   + + I   PGI  K 
Sbjct: 61  FGFLTAEDRDIFVRLLGVSGIGPKGALGILSVLRPEELRRAIFSGDIRSIQAAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K            S     +    ++   A  A+ AL++LGYG  +A  A
Sbjct: 121 AERLILDLKDKID--PPDFLPAFSDGEIPEGGEEALRDSAKEALEALLSLGYGMAEAQRA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  V  K         +++ +LR ++
Sbjct: 179 VRRV--KLTEDMTPDDVLKQSLRHLA 202


>gi|148261887|ref|YP_001236014.1| Holliday junction DNA helicase RuvA [Acidiphilium cryptum JF-5]
 gi|326405391|ref|YP_004285473.1| Holliday junction ATP-dependent DNA helicase RuvA [Acidiphilium
           multivorum AIU301]
 gi|166229624|sp|A5G2L3|RUVA_ACICJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|146403568|gb|ABQ32095.1| Holliday junction DNA helicase subunit RuvA [Acidiphilium cryptum
           JF-5]
 gi|325052253|dbj|BAJ82591.1| Holliday junction ATP-dependent DNA helicase RuvA [Acidiphilium
           multivorum AIU301]
          Length = 204

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 114/206 (55%), Gaps = 3/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G  E + +   LIDV GV Y+++C  R+L+ L       TL VET +R+D I L
Sbjct: 1   MIGRLCGTAEQIEDGRCLIDVSGVGYVVFCSARSLAALPAPPARATLLVETQVREDAITL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+   +R WF LL ++QGVGA+VA+ +LS +   +L  +I   +   I + PG+  K+
Sbjct: 61  FGFIDAAERDWFRLLTTIQGVGAKVALNLLSALPPDQLASAIAASDRGAITRAPGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+R+++EL+ +  ++                 +        +A+SALVNLGY + +A  A
Sbjct: 121 AARLISELRERIAAM---PTGSAFIPTGTAPPVAPPQGKLADALSALVNLGYRRAEAEAA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +V  +    A   ++IR  LR ++
Sbjct: 178 LSAVQAEAGEDAALDELIRGGLRRLA 203


>gi|209550796|ref|YP_002282713.1| Holliday junction DNA helicase RuvA [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|226698736|sp|B5ZP79|RUVA_RHILW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|209536552|gb|ACI56487.1| Holliday junction DNA helicase RuvA [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 204

 Score =  154 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 93/206 (45%), Positives = 143/206 (69%), Gaps = 3/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + EDYVL+DV GVCY+ +C  RTLS LG   + C LF+ET++R+DQ++L
Sbjct: 1   MIGKLKGTIDEIGEDYVLVDVHGVCYVAHCSARTLSKLGSADEACVLFIETYVREDQLKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF++ L+R+WF LLQSVQGVGA+VA+ VLS +T  EL  +I LQ+   +++ PG+  K+
Sbjct: 61  FGFMTALEREWFNLLQSVQGVGAKVALAVLSTLTPGELANAIALQDRAAVSRAPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++TELK +A + +    + ++   K++       +   +A+SAL NLGY +DQA  A
Sbjct: 121 AMRLVTELKNRAPAFAG---EAINIALKQELGEGVAAAPVADAVSALTNLGYSRDQAANA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + +K   + AD +++IRL L+ ++
Sbjct: 178 VAAAMKTAGDDADSAKLIRLGLKELA 203


>gi|227872463|ref|ZP_03990804.1| possible crossover junction endonuclease RuvA [Oribacterium sinus
           F0268]
 gi|227841694|gb|EEJ51983.1| possible crossover junction endonuclease RuvA [Oribacterium sinus
           F0268]
          Length = 199

 Score =  154 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 105/206 (50%), Gaps = 8/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G +  + ED ++I+  G+ Y +  P        K G+   L     +R+D   L
Sbjct: 1   MIRFIHGILREVKEDMLVIEAGGLGYGVRIPASVFDKAPKTGEEILLHTYFSVREDSQEL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF  + DR +F+ L SV G+G + A+G+ S ++  EL+ +II  +SK I + PG+  K 
Sbjct: 61  FGFWEERDRDFFIKLLSVSGIGPKTALGIFSCMSREELIHAIISNDSKKIQKAPGLGKKS 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K         +D++   +E     +       A+ ALV+LGY   +A   
Sbjct: 121 AERLIVELRDKVPK------EDITFSGEEAVETTATSVAVEEAVEALVSLGYSVMEAKRW 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + S+   E+  A   +++R++L+  +
Sbjct: 175 IRSIPAYEEKTA--EELLRISLKQFA 198


>gi|15895553|ref|NP_348902.1| Holliday junction DNA helicase RuvA [Clostridium acetobutylicum
           ATCC 824]
 gi|20455254|sp|Q97GT0|RUVA_CLOAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|15025290|gb|AAK80242.1|AE007729_9 Holliday junction specific DNA helicase, subunit ruvA [Clostridium
           acetobutylicum ATCC 824]
 gi|325509702|gb|ADZ21338.1| Holliday junction DNA helicase motor protein [Clostridium
           acetobutylicum EA 2018]
          Length = 201

 Score =  154 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 102/205 (49%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG   G+ +DY+++D  GV Y I+    T++ + K  +   +++   +RQD I L
Sbjct: 1   MYEYIKGKYIGINKDYIIVDNNGVGYKIFTSGNTMANMPKPEEDVLIYLTQIVRQDFIGL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  + + F  L ++ GVGA+ ++ +LS  T   L  +II  + K I + PGI  K 
Sbjct: 61  YGFLTKDELEMFNKLLTINGVGAKASLSLLSICTVNNLKYAIITGDEKTIVKAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K    S+ + +  S +N                  AL +LGY + +   A
Sbjct: 121 AQRIILELKDKFK--STDISKGNSEINNLDVDYDEHSKKLEEVRFALNSLGYSEKETDRA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +V K E        II+  LR +
Sbjct: 179 INNVDKSEG----IENIIKSCLRFL 199


>gi|311742330|ref|ZP_07716139.1| crossover junction ATP-dependent DNA helicase RuvA [Aeromicrobium
           marinum DSM 15272]
 gi|311313958|gb|EFQ83866.1| crossover junction ATP-dependent DNA helicase RuvA [Aeromicrobium
           marinum DSM 15272]
          Length = 199

 Score =  154 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 60/210 (28%), Positives = 101/210 (48%), Gaps = 18/210 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D V++DV GV Y+  C   T++ L +IG    L     +R+D + +
Sbjct: 1   MIASLRGTVAAVSLDSVVLDVGGVGYLTRCTPGTIAGL-RIGQEAQLATTLVVREDSMTV 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F L+Q+  GVG +VA+ +L+ +    L ++I   +   +  +PGI  K 
Sbjct: 60  YGFADATERDMFELVQTASGVGPKVALAMLAVLDPDRLRQAIAQADHSTLMSVPGIGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK +     S             A     P++      AL+ LG+    A  A
Sbjct: 120 AERIVVELKDRVGLAGS-------------AAPTGAPAWREQVHEALLGLGWPARDAERA 166

Query: 181 VVSVLKKEKNI----ADDSQIIRLALRAIS 206
           V +V     +     AD S ++R ALR+++
Sbjct: 167 VDNVAADLADDPGAAADVSTLLRDALRSLA 196


>gi|152976839|ref|YP_001376356.1| Holliday junction DNA helicase motor protein [Bacillus cereus
           subsp. cytotoxis NVH 391-98]
 gi|189045741|sp|A7GTA3|RUVA_BACCN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|152025591|gb|ABS23361.1| Holliday junction DNA helicase RuvA [Bacillus cytotoxicus NVH
           391-98]
          Length = 205

 Score =  154 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +E +  +Y+++D  G+ Y I+ P        +      ++   ++R+D + L
Sbjct: 1   MFEYVTGYVEYVGPEYIVLDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMAL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+G + A+ +L+     ++V++I  ++ + + + PG+  K 
Sbjct: 59  YGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIENEDERFLVKFPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   +   V  D+    +         +    A+ AL  LGY + +    
Sbjct: 119 ARQMILDLKGKLADVVPDVFVDLFSDEERFDEKKGSSTELDEALEALRALGYAEREINRV 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +LK+        Q I+ AL  +
Sbjct: 179 LPELLKE---SLTTDQYIKKALSLL 200


>gi|169831522|ref|YP_001717504.1| Holliday junction DNA helicase RuvA [Candidatus Desulforudis
           audaxviator MP104C]
 gi|229560028|sp|B1I477|RUVA_DESAP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|169638366|gb|ACA59872.1| Holliday junction DNA helicase RuvA [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 202

 Score =  154 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 106/205 (51%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +  +Y + V+++V G+ Y +  P    + L + G+   L+    +++  + +
Sbjct: 1   MIDFLKGRLVSVYPEAVVVEVGGIGYRVQVPPSLAASLPEPGETVFLYTYLSVKETALEM 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S+LDR  F+LL  V G+G R A+ V+ R+    L  +I+ +++ ++  +PGI +K 
Sbjct: 61  FGFSSELDRTAFLLLLGVAGIGPRTALAVVGRLGTRRLWAAILREDTGILTTVPGIGVKS 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RIM EL+ +       V  ++   +               A++AL++LGY   +A  A
Sbjct: 121 ARRIMVELRDRLEKQQVAVSAELPASD---GVPVLAGRAENEALAALISLGYTPREAREA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +  ++    D + ++  ALR +
Sbjct: 178 LNRLPDRK---LDAAGLVHAALRIM 199


>gi|18310930|ref|NP_562864.1| Holliday junction DNA helicase motor protein [Clostridium
           perfringens str. 13]
 gi|168208649|ref|ZP_02634274.1| holliday junction DNA helicase RuvA [Clostridium perfringens B str.
           ATCC 3626]
 gi|168214131|ref|ZP_02639756.1| holliday junction DNA helicase RuvA [Clostridium perfringens CPE
           str. F4969]
 gi|168215574|ref|ZP_02641199.1| holliday junction DNA helicase RuvA [Clostridium perfringens NCTC
           8239]
 gi|169343575|ref|ZP_02864574.1| holliday junction DNA helicase RuvA [Clostridium perfringens C str.
           JGS1495]
 gi|20455244|sp|Q8XJ13|RUVA_CLOPE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|18145612|dbj|BAB81654.1| holliday junction DNA helicase [Clostridium perfringens str. 13]
 gi|169298135|gb|EDS80225.1| holliday junction DNA helicase RuvA [Clostridium perfringens C str.
           JGS1495]
 gi|170713198|gb|EDT25380.1| holliday junction DNA helicase RuvA [Clostridium perfringens B str.
           ATCC 3626]
 gi|170714360|gb|EDT26542.1| holliday junction DNA helicase RuvA [Clostridium perfringens CPE
           str. F4969]
 gi|182381996|gb|EDT79475.1| holliday junction DNA helicase RuvA [Clostridium perfringens NCTC
           8239]
          Length = 201

 Score =  154 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 105/205 (51%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I+G  +G+ +DYV+I++  + Y I+    T+S + K+GD   L++E  +R+D I L
Sbjct: 1   MYEYIRGQFQGISKDYVVIELNNIGYKIFTSGNTMSNMPKVGDEVLLYLEQIVREDFIGL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  + + F LL S+ GVGA+ A+ +LS  T   L  +I++ + K I + PGI  K 
Sbjct: 61  YGFTTREELEMFKLLLSINGVGAKAALSLLSISTVNNLKYAIMMGDEKHITRAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K        ++             S        +SAL+ LGY + +A  A
Sbjct: 121 AQRIILELKDKLKPDELTSEEGQLIEGINDNSDYSFN--INETLSALMALGYTEKEAQKA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  V K          +I+ +L+ +
Sbjct: 179 LEKVDKTL----SIENMIKESLKLL 199


>gi|168204868|ref|ZP_02630873.1| holliday junction DNA helicase RuvA [Clostridium perfringens E str.
           JGS1987]
 gi|170663669|gb|EDT16352.1| holliday junction DNA helicase RuvA [Clostridium perfringens E str.
           JGS1987]
          Length = 201

 Score =  154 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 104/205 (50%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I+G  +G+ +DYV+I++  + Y I+    T+S + K+GD   L++E  +R+D I L
Sbjct: 1   MYEYIRGQFQGISKDYVVIELNNIGYKIFTSGNTMSNMPKVGDEVLLYLEQIVREDFIGL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  + + F LL S+ GVGA+ A+ +LS  T   L   I++ + K I + PGI  K 
Sbjct: 61  YGFTTREELEMFKLLLSINGVGAKAALSLLSISTVNNLKYGIMMGDEKHITRAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K        ++             S        +SAL+ LGY + +A  A
Sbjct: 121 AQRIILELKDKLKPDELTSEEGQLIEGINDNSDYSFN--INETLSALMALGYTEKEAQKA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  V K          +I+ +L+ +
Sbjct: 179 LEKVDKAL----SIENMIKESLKLL 199


>gi|237723715|ref|ZP_04554196.1| holliday junction DNA helicase ruvA [Bacteroides sp. D4]
 gi|265756839|ref|ZP_06090827.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 3_1_33FAA]
 gi|229437926|gb|EEO48003.1| holliday junction DNA helicase ruvA [Bacteroides dorei 5_1_36/D4]
 gi|263233625|gb|EEZ19245.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 3_1_33FAA]
          Length = 197

 Score =  154 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 104/205 (50%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG+I  +    V++D  G+ Y I   + T S + +      L++   +R+D   L
Sbjct: 1   MIEYIKGDIAEITPATVVLDCNGMGYGINISLNTYSAI-QNQSNTKLYIYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F+LL SV G+G   A  +LS ++ +EL   I   N K++  + GI +K 
Sbjct: 60  YGFSTKQERELFLLLISVSGIGGNTARMILSALSPSELCGVISSGNDKLLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K           +  VN E     +       A+SAL  LG+ Q  +   
Sbjct: 120 AQRIIVDLKDKI------ATSGVETVNSEMFANPANTEIHDEAVSALTMLGFAQAASQKV 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++LK+E   A   ++I+LAL+ +
Sbjct: 174 VAAILKEEP-AAPVEKVIKLALKRL 197


>gi|49476147|ref|YP_034188.1| Holliday junction DNA helicase motor protein [Bartonella henselae
           str. Houston-1]
 gi|81648457|sp|Q6G5R0|RUVA_BARHE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|49238955|emb|CAF28253.1| Holliday junction DNA helicase ruvA [Bartonella henselae str.
           Houston-1]
          Length = 205

 Score =  154 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 75/207 (36%), Positives = 132/207 (63%), Gaps = 6/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG +E +++D+++++VQGV Y+++   R    L  +G+  +LF+ETH+R++ IRL
Sbjct: 1   MIGKLKGILEHIFDDHIIVNVQGVGYVVFISNRLRPSLPALGESLSLFIETHVREEAIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF++  +++WF LLQ+V GVGA+VA+ +L  ++  EL ++I L +  +I++ PG+  K+
Sbjct: 61  FGFIAKAEQEWFCLLQNVPGVGAKVALAILGTLSPDELAQAIALNDIAMISRAPGVGKKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           + RI++ELK KA+  S  V       +    H+        +A+SAL+ LG+ +DQA  A
Sbjct: 121 SERIVSELKSKALPFSEKV-----IHSAPLPHLEVTNQPTNDALSALIKLGFERDQAARA 175

Query: 181 VV-SVLKKEKNIADDSQIIRLALRAIS 206
           +  +V   E      + +IR +L+ +S
Sbjct: 176 LALAVNALEGETVSSALLIRHSLKLLS 202


>gi|229086983|ref|ZP_04219140.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           Rock3-44]
 gi|228696359|gb|EEL49187.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           Rock3-44]
          Length = 205

 Score =  154 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 95/205 (46%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +E +  +YV++D  G+ Y I+ P        +      ++   ++R+D + L
Sbjct: 1   MFEYVTGYVEYVGPEYVVLDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMAL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K 
Sbjct: 59  YGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   +      D+    +         +    A+ AL  LGY + +    
Sbjct: 119 ARQMILDLKGKLADVVPDAFVDLFSDVERFDEKKGSSAELDEALEALRALGYAEREVNRV 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +LK+        Q I+ AL  +
Sbjct: 179 IPELLKE---SLTTDQYIKKALSLL 200


>gi|77464125|ref|YP_353629.1| Holliday junction DNA helicase RuvA [Rhodobacter sphaeroides 2.4.1]
 gi|126462968|ref|YP_001044082.1| Holliday junction DNA helicase RuvA [Rhodobacter sphaeroides ATCC
           17029]
 gi|90135713|sp|Q3J0F6|RUVA_RHOS4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166200251|sp|A3PLU4|RUVA_RHOS1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|77388543|gb|ABA79728.1| Holliday junction DNA helicase subunit RuvA [Rhodobacter
           sphaeroides 2.4.1]
 gi|126104632|gb|ABN77310.1| Holliday junction DNA helicase RuvA [Rhodobacter sphaeroides ATCC
           17029]
          Length = 224

 Score =  154 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 121/222 (54%), Gaps = 17/222 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++    D+VLIDV+GV YI+Y   RTL+ +  +G+   L+ E  +R+D ++L
Sbjct: 1   MIGKVAGILDFRGPDHVLIDVRGVGYIVYVSDRTLASMPGLGEGVALYTELVVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++W  LL +VQGVGA+  M +L  + A     +I L +++ I   PGI  KI
Sbjct: 61  FGFPTMIEKEWHRLLMTVQGVGAKAGMAILGALGAEGTARAITLGDARSIQAAPGIGPKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN----------------KEQAHICSMPSFAINAI 164
           A R++ ELK KA +L ++     +                   K +A     PS   +A+
Sbjct: 121 AQRVVLELKSKAPALMAMGGGTAALAPSEPPEPEPGTSSGSRRKTRAPEPPRPSHTADAL 180

Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           SAL NLGY    A  AV     +  + AD + +IR AL+ ++
Sbjct: 181 SALANLGYQPTDAAQAVAQAAGESPD-ADTAALIRAALKLLA 221


>gi|182624414|ref|ZP_02952198.1| holliday junction DNA helicase RuvA [Clostridium perfringens D str.
           JGS1721]
 gi|177910417|gb|EDT72794.1| holliday junction DNA helicase RuvA [Clostridium perfringens D str.
           JGS1721]
          Length = 201

 Score =  154 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 105/205 (51%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I+G  +G+ +DYV+I++  + Y I+    T+S + K+G+   L++E  +R+D I L
Sbjct: 1   MYEYIRGQFQGISKDYVVIELNNIGYKIFTSGNTMSNMPKVGEEVLLYLEQIVREDFIGL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  + + F LL S+ GVGA+ A+ +LS  T   L  +I++ + K I + PGI  K 
Sbjct: 61  YGFTTREELEMFKLLLSINGVGAKAALSLLSISTVNNLKYAIMMGDEKHITRAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K        ++             S        +SAL+ LGY + +A  A
Sbjct: 121 AQRIILELKDKLKPDELTSEEGQLIEGINDNSDYSFN--INETLSALMALGYTEKEAQKA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  V K          +I+ +L+ +
Sbjct: 179 LEKVDKTL----SIENMIKESLKLL 199


>gi|296137136|ref|YP_003644378.1| Holliday junction DNA helicase RuvA [Thiomonas intermedia K12]
 gi|295797258|gb|ADG32048.1| Holliday junction DNA helicase RuvA [Thiomonas intermedia K12]
          Length = 190

 Score =  154 bits (389), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 97/206 (47%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L+DV GV Y +  P+ TL  L  +G   TL + T +R+D   L
Sbjct: 1   MIGRLHGTLLDKSPPQILLDVGGVGYEVDVPMSTLYDLPAVGHAVTLLIHTVIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  + G+G R+A+ VLS ++ +E+ +++  Q++    ++PGI  K 
Sbjct: 61  YGFATAGERSTFRELLKISGIGPRIALAVLSGLSVSEIAQAVTQQDAVRFTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R              +++              +    A + + AL+ LGY + +A  A
Sbjct: 121 AER-------------LLLELKGKLGADLGGAATAAAGSASDVLQALIALGYSEREAAAA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
             ++             IR AL++++
Sbjct: 168 AKAL----PEGCSVDDGIRQALKSLA 189


>gi|238019731|ref|ZP_04600157.1| hypothetical protein VEIDISOL_01606 [Veillonella dispar ATCC 17748]
 gi|237863772|gb|EEP65062.1| hypothetical protein VEIDISOL_01606 [Veillonella dispar ATCC 17748]
          Length = 202

 Score =  154 bits (389), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 111/205 (54%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +  L+++   +DV GV Y +Y P  T   L + G   TLF   ++R+D ++L
Sbjct: 1   MIGYVRGIVTHLFKESCYVDVHGVGYRVYVPTTTRQQLIE-GHEATLFTYLNVREDAMQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ + + F+LL SV G+G +V +G+LS +T      ++I    + + ++PGI  K 
Sbjct: 60  YGFWTEEEYELFILLISVSGIGPKVGLGILSGMTPEAFKLAVINGQVQQLTKLPGIGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K   ++ +  +  + +        +    A  AI ALV+LGY +      
Sbjct: 120 AERLVLELKDKLAKMTHISAESPAAIQPIGV---AASGAAGEAIEALVSLGYSERDVADI 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V S+   +    D S++I+++L  +
Sbjct: 177 VESL---DDGKRDVSELIKVSLIEL 198


>gi|89099000|ref|ZP_01171880.1| Holliday junction DNA helicase motor protein [Bacillus sp. NRRL
           B-14911]
 gi|89086404|gb|EAR65525.1| Holliday junction DNA helicase motor protein [Bacillus sp. NRRL
           B-14911]
          Length = 203

 Score =  154 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 97/205 (47%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +E +  +Y++++  G+ Y I  P    S   K G    +F   ++R+D   L
Sbjct: 1   MFEYIKGTVEFIGPEYIVVENNGLGYQISTP-NPFSYSNKQGGEIQIFTYHYVREDIFAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  ++  F  L +V G+G + A+ +L+     ++V++I  ++   + + PG+  K 
Sbjct: 60  YGFHSREEKMLFTKLLNVSGIGPKGALAILASGEPAQVVQAIEDEDEAFLVKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK          ++   +  +       +    AI AL  LGY + +    
Sbjct: 120 ARQMILDLKGKLQEAIPDFFPNLFNPDAARPAATGSAALLEEAILALRALGYSEKEVKR- 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +   L+KEK      + I+  L+ +
Sbjct: 179 IKPALEKEK--LTTDEYIKKGLQLL 201


>gi|229543702|ref|ZP_04432762.1| Holliday junction DNA helicase RuvA [Bacillus coagulans 36D1]
 gi|229328122|gb|EEN93797.1| Holliday junction DNA helicase RuvA [Bacillus coagulans 36D1]
          Length = 200

 Score =  154 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 100/205 (48%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG I+ +  DY++++  G+ Y +  P         IG    +F   H+R+D I L
Sbjct: 1   MYEYIKGIIDSVSPDYIVVENGGIGYRLLAP-NPYIFSKSIGQERKIFTYQHVREDLIAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L +V G+G + A+ +L+     ++V++I  +N   + + PG+  K 
Sbjct: 60  YGFETAEERALFQKLLNVSGIGPKGALAILAYGQPQQVVDAIENENESFLVKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   L   +  +       +A   S       A+ AL  LGY + +    
Sbjct: 120 ARQMILDLKGKLQGLVPEMPDEAGVE---KAVPASTNQNLEEAMLALAALGYSEKEIAKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  + ++   +    + I+LAL+A+
Sbjct: 177 VPELPEE---VLSADEYIKLALKAM 198


>gi|225873651|ref|YP_002755110.1| Holliday junction DNA helicase RuvA [Acidobacterium capsulatum ATCC
           51196]
 gi|254766934|sp|C1F8Z2|RUVA_ACIC5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|225792770|gb|ACO32860.1| Holliday junction DNA helicase RuvA [Acidobacterium capsulatum ATCC
           51196]
          Length = 198

 Score =  154 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 102/206 (49%), Gaps = 10/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +        +++  GV Y +   + T + L   G    L + T + +D I L
Sbjct: 1   MIAHLRGTLLSKQPGQAIVECAGVGYDVAISVPTFTALPAEGAEVRLHIHTQVSEDAIAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL   +++ F  L +V GVG ++A+ +LS ++    V ++  Q+   + +IPG+  K+
Sbjct: 61  FGFLDREEKRLFERLITVSGVGPKLAIKMLSGLSPERTVAALRAQDHASLTRIPGVGKKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K   L               A   +    A + +SAL+NLGY +  A  A
Sbjct: 121 AERLVVELKDKLDDL---------IAAAPAAGPVAAGPAAEDVLSALLNLGYQRPAALKA 171

Query: 181 VVSVLKKEKNIADDSQII-RLALRAI 205
           + + ++K+    +D  ++ R AL+ I
Sbjct: 172 IETAVEKDAAAGEDFDLLFRAALKLI 197


>gi|212690798|ref|ZP_03298926.1| hypothetical protein BACDOR_00285 [Bacteroides dorei DSM 17855]
 gi|237708184|ref|ZP_04538665.1| holliday junction DNA helicase ruvA [Bacteroides sp. 9_1_42FAA]
 gi|212666675|gb|EEB27247.1| hypothetical protein BACDOR_00285 [Bacteroides dorei DSM 17855]
 gi|229457737|gb|EEO63458.1| holliday junction DNA helicase ruvA [Bacteroides sp. 9_1_42FAA]
          Length = 197

 Score =  154 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 64/205 (31%), Positives = 104/205 (50%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG+I  +    V++D  G+ Y I   + T S + +      L++   +R+D   L
Sbjct: 1   MIEYIKGDIAEITPATVVLDCNGMGYGINISLNTYSAI-QNQSNTKLYIYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F+LL SV G+G   A  +LS ++ +EL   I   N K++  + GI +K 
Sbjct: 60  YGFSTKQERELFLLLISVSGIGGNTARMILSALSPSELCGVISSGNDKLLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K           +  VN E     +       AISAL  LG+ Q  +   
Sbjct: 120 AQRIIVDLKDKI------ATSGVETVNSEMFANPANTEIHDEAISALTMLGFAQAASQKV 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++LK+E   A   ++I+LAL+ +
Sbjct: 174 VAAILKEEP-AAPVEKVIKLALKRL 197


>gi|110800505|ref|YP_696628.1| Holliday junction DNA helicase RuvA [Clostridium perfringens ATCC
           13124]
 gi|123148615|sp|Q0TP12|RUVA_CLOP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|110675152|gb|ABG84139.1| Holliday junction DNA helicase RuvA [Clostridium perfringens ATCC
           13124]
          Length = 201

 Score =  154 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 105/205 (51%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I+G  +G+ +DYV+I++  + Y I+    T+S + K+G+   L++E  +R+D I L
Sbjct: 1   MYEYIRGQFQGISKDYVVIELNNIGYKIFTSGNTMSNMPKVGEEVLLYLEQIVREDFIGL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  + + F LL S+ GVGA+ A+ +LS  T   L  +I++ + K I + PGI  K 
Sbjct: 61  YGFTTREELEMFKLLLSINGVGAKAALSLLSISTVNNLKYAIMMGDEKHITRAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K        ++             S        +SAL+ LGY + +A  A
Sbjct: 121 AQRIILELKDKLKPDELTSEEGELIEGINDNSDYSFN--INETLSALMALGYTEKEAQKA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  V K          +I+ +L+ +
Sbjct: 179 LEKVDKTL----SIENMIKESLKLL 199


>gi|160871606|ref|ZP_02061738.1| holliday junction DNA helicase RuvA [Rickettsiella grylli]
 gi|159120405|gb|EDP45743.1| holliday junction DNA helicase RuvA [Rickettsiella grylli]
          Length = 199

 Score =  154 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 60/207 (28%), Positives = 102/207 (49%), Gaps = 9/207 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI +++G +       +L++V     Y I   + T   L   G+   L+ +  +R+D   
Sbjct: 1   MINRLRGILVEKQPPILLVEVANAFTYEIQASMHTFYQLPHCGEKVFLYTQFIVREDGHF 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  +R  F  L  V GVG +VA+G+LS+I  TE V  +  QN   +  +PGI  K
Sbjct: 61  LYGFSTPEERFLFTQLLKVSGVGPKVALGILSKIEVTEFVSCVEQQNVNSLQAVPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ E++ +  +LS    + +      +  I S+     +AI+AL+ LGY   +A+ 
Sbjct: 121 TAERLIIEMRDRLRNLSHNQPEILD-----KNTIQSLKHIQQDAIAALMALGYKNQEASR 175

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV+ +            +IR AL  I+
Sbjct: 176 AVLRIKDA---SLSLEALIRHALNTIN 199


>gi|293371094|ref|ZP_06617631.1| Holliday junction DNA helicase RuvA [Bacteroides ovatus SD CMC 3f]
 gi|292633752|gb|EFF52304.1| Holliday junction DNA helicase RuvA [Bacteroides ovatus SD CMC 3f]
          Length = 200

 Score =  154 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  L     +ID  GV Y     + T S + +    C L++   +R+D   L
Sbjct: 1   MIEYIRGELVELSPATAVIDCNGVGYAANISLNTYSAI-QGKKSCKLYIYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F+LL SV G+G   A  +LS ++  ELV  I  +N+ ++  + GI +K 
Sbjct: 60  YGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K  ++        S     Q    +       A+SAL  LG+    +   
Sbjct: 120 AQRVIVDLKDKIKTMGMSAAGGASAGLLLQ---PANAEVQEEAVSALTMLGFAAAPSQKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+++LK+E + A   ++I+LAL+ +
Sbjct: 177 VLAILKEEPD-APVEKVIKLALKRL 200


>gi|320528952|ref|ZP_08030044.1| Holliday junction DNA helicase RuvA [Selenomonas artemidis F0399]
 gi|320138582|gb|EFW30472.1| Holliday junction DNA helicase RuvA [Selenomonas artemidis F0399]
          Length = 198

 Score =  154 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 103/205 (50%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +     D+ L+DV  V Y ++   +T + + + G+   L++ TH+R+D I L
Sbjct: 1   MIGFLRGTVVHSAVDHCLLDVHNVGYRVFVSRKTCAHIAQ-GEEALLYIHTHVREDAILL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +   F  L  + G+G + A  +LS +T  +    I  ++ K I ++PGI  K 
Sbjct: 60  YGFFSQEEYDLFQHLIGISGIGPKGAQSILSEVTPHDFYRLIHKKDVKGITKLPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K  + +     D S V           S    A  AL++LG+ Q++    
Sbjct: 120 AERLVLELKDKFGAYADTGVDDTSAV-----VSDVSDSMLAEATEALMSLGFQQNE---- 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +V + + +     +++R AL  +
Sbjct: 171 IQTVFQGKTDYQSTEELVRYALSVL 195


>gi|242280346|ref|YP_002992475.1| Holliday junction DNA helicase RuvA [Desulfovibrio salexigens DSM
           2638]
 gi|259495638|sp|C6C065|RUVA_DESAD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|242123240|gb|ACS80936.1| Holliday junction DNA helicase RuvA [Desulfovibrio salexigens DSM
           2638]
          Length = 203

 Score =  154 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 60/207 (28%), Positives = 103/207 (49%), Gaps = 8/207 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I G +    +   +I    GV Y ++  +  +S L + G   T +V + +R+D   
Sbjct: 1   MIAYIHGKLLEATDKSCIILTPGGVGYELFLTLSAISTLPESGSDVTFYVHSVIREDAFD 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    DR+ F  L SV  +G + A+ +LS+    +L + +  ++ K ++ +PGI  K
Sbjct: 61  LYGFPCFDDREVFRTLISVDRLGPKKALAILSQFGPKDLQDLVFREDVKTLSIVPGIGPK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +I+  LK K  +L S      + V      +    S  ++A+S L NLGYG D+   
Sbjct: 121 SARQILWSLKDKMETLKS------ATVRSGACPVEGDRSEFLDALSGLRNLGYGDDEVRD 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
            +  +  +E ++ D    IR+AL+ IS
Sbjct: 175 FLKDIFDEEPDL-DAGGAIRVALKKIS 200


>gi|254445801|ref|ZP_05059277.1| Holliday junction DNA helicase RuvA [Verrucomicrobiae bacterium
           DG1235]
 gi|198260109|gb|EDY84417.1| Holliday junction DNA helicase RuvA [Verrucomicrobiae bacterium
           DG1235]
          Length = 205

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 59/204 (28%), Positives = 102/204 (50%), Gaps = 2/204 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +E       +I+  G+ Y+++ P+ T + L   G+   L      R+D   L
Sbjct: 1   MIVSIEGILERATPLTAIINAGGLGYLVHIPVSTAAKLPANGETVKLHTHAVYREDSQSL 60

Query: 61  FGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +GF S+ +R +F LL   V GVG +VA+G++S++    L+ +I   ++ ++A+ PGI  K
Sbjct: 61  YGFASEDERNFFQLLIEKVSGVGPKVAIGMMSKLELPSLISAIGNADAVLLAKTPGIGKK 120

Query: 120 IASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
            A R++ ELK K  + + +     +  +           S   +AI AL+ LGY Q  A 
Sbjct: 121 TAERVVIELKDKLGAFAHTSSANPLQGLVPGNTAAAGKVSHEDDAILALLALGYKQSDAA 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLAL 202
            +V   ++     A    +I+ AL
Sbjct: 181 KSVGKAVEALGPNASTEALIKAAL 204


>gi|289422389|ref|ZP_06424235.1| holliday junction DNA helicase RuvA [Peptostreptococcus anaerobius
           653-L]
 gi|289157224|gb|EFD05843.1| holliday junction DNA helicase RuvA [Peptostreptococcus anaerobius
           653-L]
          Length = 207

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 69/202 (34%), Positives = 98/202 (48%), Gaps = 5/202 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG IKG I+ +  DY+LI+  G+ Y +     TLS L  IG    ++ +  +R+D I L
Sbjct: 1   MIGYIKGIIDEIGIDYILIENNGIGYKLLVSTTTLSQL-SIGQEAKIYTKMIVREDDISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF S  + + F LL SV  VG +V MG+LS      +   II  +   +++ PG+  K 
Sbjct: 60  CGFYSKEEEEMFKLLTSVSKVGTKVGMGILSFAPPARIQSIIINSDVTAMSKAPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K   +       M  +      I    S    AISAL+ LGY   +A  +
Sbjct: 120 AERIILELKDKVGKIVIDGLDTMENLPLSGKEIAIDNS-EDEAISALIALGYTSSEAQES 178

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           V  V +      D   II+ AL
Sbjct: 179 VNFVKQ---PGMDVEVIIKKAL 197


>gi|224025806|ref|ZP_03644172.1| hypothetical protein BACCOPRO_02548 [Bacteroides coprophilus DSM
           18228]
 gi|224019042|gb|EEF77040.1| hypothetical protein BACCOPRO_02548 [Bacteroides coprophilus DSM
           18228]
          Length = 198

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 102/205 (49%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +  +     +I+  G+ Y I   + T S + +      L++   +R+D   L
Sbjct: 1   MIEYIKGEVIEVVPAQAVIECNGIGYAISISLNTFSAI-QGKKEVKLYIYEAIREDAHIL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F+LL +V G+G   A  +LS ++ +EL   I   N K++  + GI +K 
Sbjct: 60  YGFYTRQERELFLLLITVSGIGGNTARMILSALSPSELCNVISSGNDKLLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K  S        ++ V        +       A++AL  LG+ Q  +   
Sbjct: 120 AQRIIVDLKDKIASTGIDTAAPVTSV-----IASANTEVYEEAVAALTMLGFAQAPSQKV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +LK+E ++    ++I+LAL+ +
Sbjct: 175 VGLLLKEEPDLP-VEKVIKLALKRL 198


>gi|289578210|ref|YP_003476837.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter italicus
           Ab9]
 gi|297544491|ref|YP_003676793.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|289527923|gb|ADD02275.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter italicus
           Ab9]
 gi|296842266|gb|ADH60782.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 187

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 97/205 (47%), Gaps = 20/205 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G IE + ++YV+ID  G+   ++ P  TL  L   G+   L+   H+R+D  ++
Sbjct: 1   MIEYIRGMIEDIGQNYVIIDFMGIGIKVFVPFSTLKALPTKGNITKLYTYLHVREDGFQI 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +   F  L SV GVG + A+ +LS +      + +   + K +  +PGI  K 
Sbjct: 61  FGFKTKEELDLFEKLLSVNGVGPKGALSILSVVPIDNFAKVVNTGDYKALTLVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K                  +    S  + +  A+ AL+ LGY + +A +A
Sbjct: 121 AERIILELKDKLPK---------------EIVFESDNNLSNEALEALLALGYSKSEAISA 165

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +           + ++ AL+ +
Sbjct: 166 LADI-----TCNSVEETVKQALKKL 185


>gi|229586656|ref|YP_002845157.1| Holliday junction DNA helicase RuvA [Rickettsia africae ESF-5]
 gi|259495654|sp|C3PNA4|RUVA_RICAE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|228021706|gb|ACP53414.1| Holliday junction DNA helicase RuvA [Rickettsia africae ESF-5]
          Length = 203

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 71/203 (34%), Positives = 122/203 (60%), Gaps = 6/203 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G ++   +DYV+IDV GV Y++Y   +TL  L + G+F  LF+ETH+R++ I L
Sbjct: 1   MIGQLSGKVDAQGDDYVIIDVNGVGYLVYASGKTLGKLAE-GEFYKLFIETHVREEHIHL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++ +F LLQSV G+G R+A+ +LS +T +++  ++  ++  +   I G+  K+
Sbjct: 60  YGFLNLEEKIFFNLLQSVNGIGTRMALFILSSLTPSDIQIAVNNEDKNIFKAISGVGAKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELKGK   +SS      + + +        P  +   I ALVNLG+ + +A  A
Sbjct: 120 AERIVLELKGKVAKISS----GSAIIKESLNIKHITPVASNEVIKALVNLGFSRFEAQNA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  ++ +   I    ++I+ AL+
Sbjct: 176 VQGIITQNPEI-SIDELIKTALK 197


>gi|269103018|ref|ZP_06155715.1| holliday junction DNA helicase RuvA [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268162916|gb|EEZ41412.1| holliday junction DNA helicase RuvA [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 187

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 53/188 (28%), Positives = 89/188 (47%), Gaps = 7/188 (3%)

Query: 22  QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGV 81
            G+ Y +  P+     L ++G    +F    +R+D   L+GF    +R+ F  +    GV
Sbjct: 2   GGIGYEVQMPMSCFYELPEVGQEAIIFTHFVVREDAQLLYGFNKKSERELFREVIKANGV 61

Query: 82  GARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS---- 137
           G ++ + +LS +TA++ V S+  ++   + +IPG+  K A R++ E+K +          
Sbjct: 62  GPKLGLAILSAMTASQFVLSVEQEDITTLVKIPGVGKKTAERLLVEMKDRLKGWGEGDLF 121

Query: 138 VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQI 197
              QD +  N    +  S       A+SALV LGY   QA+  V  V + E        I
Sbjct: 122 TPAQDTAASNAPIQNPSSQARAEDEAVSALVALGYKPQQASKVVSQVAQPE---MSSETI 178

Query: 198 IRLALRAI 205
           IR ALR++
Sbjct: 179 IREALRSM 186


>gi|326201641|ref|ZP_08191512.1| Holliday junction DNA helicase RuvA [Clostridium papyrosolvens DSM
           2782]
 gi|325988241|gb|EGD49066.1| Holliday junction DNA helicase RuvA [Clostridium papyrosolvens DSM
           2782]
          Length = 201

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 105/206 (50%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +E    D ++++  G+ Y I+  + T++ LG+ G    +F   ++R+D   L
Sbjct: 1   MFAYIKGTVEVKNNDSIIVEAGGIGYRIFTALSTINNLGQTGTTVKIFTHYYVREDIAAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +   F +L +V GVG + A+ ++S ++ +    +++ Q++K + +  GI MK+
Sbjct: 61  YGFGTMEELSMFEMLLAVSGVGPKAAISLISTLSPSRFALAVVSQDTKSLTKAQGIGMKM 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K            +     +       S    A+SAL+ LGYG  +A+  
Sbjct: 121 AQRIILELKDKISKEQLTASIPTAGS---ENSFAPGDSVLSEAVSALMVLGYGSVEASGI 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  + +   +      +I+ AL+++S
Sbjct: 178 ITGIYE---DGMSVEDLIKKALKSLS 200


>gi|317496792|ref|ZP_07955122.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316895804|gb|EFV17956.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 201

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 64/205 (31%), Positives = 107/205 (52%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +E +    V++D  G+ Y +  P+R      KIG    ++   H+R+D + L
Sbjct: 1   MISYIKGILEDMSPGMVVVDNHGIGYQMMVPMRG-ESFPKIGQEIKIYTHMHVREDDVSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLS  +++ F LL  V G+G +V + VLS ++  EL  ++I ++ K I++ PG+  K 
Sbjct: 60  FGFLSKEEKEAFELLIGVNGIGPKVGLSVLSTLSVYELKMAVISEDVKTISKTPGLGPKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK K       +++D            S  S  I  I  LV+LGY + +A  A
Sbjct: 120 AKKLILELKDKLS--FEELEEDGVGAEIFDTSADSSDSVMI-TIEGLVSLGYSKSEAAIA 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V  ++       ++++ AL+ I
Sbjct: 177 VNKV--EDAKDLTPEELLKKALKNI 199


>gi|310643559|ref|YP_003948317.1| holliday junction ATP-dependent DNA helicase ruva [Paenibacillus
           polymyxa SC2]
 gi|309248509|gb|ADO58076.1| Holliday junction ATP-dependent DNA helicase ruvA [Paenibacillus
           polymyxa SC2]
          Length = 204

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G++  L  +YV++DVQGV Y ++CP        K      ++   H+R+D I L
Sbjct: 1   MIDFLRGSVAHLENEYVVLDVQGVGYRVFCPNP--YAFAKTEGPVVIYTHHHVREDAILL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  ++Q F  L  V G+G RVA+G+L   T   +V +I  +N   + ++PGI  K 
Sbjct: 59  FGFATREEQQLFRKLIDVSGIGPRVALGILGGGTPAHVVTAIYQENITFLTKLPGIGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K   + ++     + +  E A      S+   A  AL  LGY   +    
Sbjct: 119 AQRMILDLKDKLDGIGAL--GMATGLFAEPAVEEGQGSYWSEAREALKALGYTDAELDKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              + K  K       +++ AL+ +
Sbjct: 177 WSKMKKDAKPDDSADILMKRALQLL 201


>gi|220928772|ref|YP_002505681.1| Holliday junction DNA helicase RuvA [Clostridium cellulolyticum
           H10]
 gi|254766954|sp|B8I1A3|RUVA_CLOCE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|219999100|gb|ACL75701.1| Holliday junction DNA helicase RuvA [Clostridium cellulolyticum
           H10]
          Length = 199

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 108/205 (52%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +E    D ++++  G+ Y I+  + T++ +G+ G    ++   ++R+D   L
Sbjct: 1   MFAYIKGTVEEKNNDSIIVEAGGIGYRIFTALSTINNMGQNGTTVKIYTHYYVREDIAVL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +   F +L +V GVG + A+ ++S ++ +    +++ Q++K + + PGI MK+
Sbjct: 61  YGFGTVEELTMFEMLLTVSGVGPKAAISMISTLSPSRFYLAVVSQDTKSLTKAPGIGMKM 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K           M+     +       S    A+SAL+ LGYG  +A++ 
Sbjct: 121 AQRIILDLKDKISKEQLTSSIPMTSPENNEVT---GDSVLSEAVSALMVLGYGSAEASST 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  + +K        ++++ AL+++
Sbjct: 178 ISGIYEK---GISVEELVKKALKSL 199


>gi|150004217|ref|YP_001298961.1| Holliday junction DNA helicase RuvA [Bacteroides vulgatus ATCC
           8482]
 gi|254884765|ref|ZP_05257475.1| holliday junction DNA helicase ruvA [Bacteroides sp. 4_3_47FAA]
 gi|294774978|ref|ZP_06740508.1| Holliday junction DNA helicase RuvA [Bacteroides vulgatus PC510]
 gi|319644172|ref|ZP_07998697.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacteroides sp.
           3_1_40A]
 gi|166230518|sp|A6L0X5|RUVA_BACV8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|149932641|gb|ABR39339.1| Holliday junction DNA helicase ruvA [Bacteroides vulgatus ATCC
           8482]
 gi|254837558|gb|EET17867.1| holliday junction DNA helicase ruvA [Bacteroides sp. 4_3_47FAA]
 gi|294451187|gb|EFG19657.1| Holliday junction DNA helicase RuvA [Bacteroides vulgatus PC510]
 gi|317384294|gb|EFV65265.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacteroides sp.
           3_1_40A]
          Length = 197

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 103/205 (50%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG+I  +    V++D  G+ Y I   + T S + +      L++   +R+D   L
Sbjct: 1   MIEYIKGDIAEITPATVVLDCNGMGYGINISLNTYSAI-QNQSNTKLYIYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F+LL SV G+G   A  +LS ++ +EL   I   N K++  + GI +K 
Sbjct: 60  YGFSTKQERELFLLLISVSGIGGNTARMILSALSPSELCGVISSGNDKLLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K           +  VN E             A++AL  LG+ Q  +   
Sbjct: 120 AQRIIVDLKDKI------ATSGVETVNSEMFANPGNTEIHDEAVAALTMLGFAQAASQKV 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++LK+E   A   ++I+LAL+ +
Sbjct: 174 VAAILKEEP-AAPVEKVIKLALKRL 197


>gi|239907719|ref|YP_002954460.1| holliday junction DNA helicase RuvA [Desulfovibrio magneticus RS-1]
 gi|259495640|sp|C4XIJ9|RUVA_DESMR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|239797585|dbj|BAH76574.1| holliday junction DNA helicase RuvA [Desulfovibrio magneticus RS-1]
          Length = 202

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 100/207 (48%), Gaps = 10/207 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG ++G +    + + ++    GV Y +  P    + L   G   +LFV T +R+D + 
Sbjct: 1   MIGYLEGRVVARRDRFAIVLTPGGVGYELELPTPVAAALPAPGGQVSLFVHTVVREDALE 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF S  DR+ F  L  +  +G R A+ +LS  TA +L+  +   +++ + ++PGI  K
Sbjct: 61  LFGFASLDDRETFRTLIGISKLGPRTALAILSHFTADDLLRVVASGDAEALVRVPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI  EL  K    +       S        +      A + ++ L NLGY + +A  
Sbjct: 121 SAQRIFIELSYKLEGRAPAAGLAPS--------VPIPGGVAGDVVAGLTNLGYPEPEARQ 172

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
               VL+ E ++ D +  +R AL+ ++
Sbjct: 173 VAAEVLEAEPDL-DVAAALRQALKRLA 198


>gi|295084896|emb|CBK66419.1| Holliday junction DNA helicase subunit RuvA [Bacteroides
           xylanisolvens XB1A]
          Length = 200

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 104/205 (50%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  L     +ID  GV Y     + T S + +    C L++   +R+D   L
Sbjct: 1   MIEYIRGELAELSPATAVIDCNGVGYAANISLNTYSAI-QGKKNCKLYIHEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F+LL SV G+G   A  +LS ++  ELV  I  +N+ ++  + GI +K 
Sbjct: 60  YGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K  ++S       S     Q    +       A+SAL  LG+    +   
Sbjct: 120 AQRVIVDLKDKIKTMSGSAGGGSSAGLLLQ---PANAEVQEEAVSALTMLGFAAAPSQKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+++LK+E + A   ++I+LAL+ +
Sbjct: 177 VLAILKEEPD-APVEKVIKLALKRL 200


>gi|237714009|ref|ZP_04544490.1| holliday junction DNA helicase ruvA [Bacteroides sp. D1]
 gi|262407061|ref|ZP_06083610.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 2_1_22]
 gi|294644868|ref|ZP_06722608.1| Holliday junction DNA helicase RuvA [Bacteroides ovatus SD CC 2a]
 gi|294809795|ref|ZP_06768479.1| Holliday junction DNA helicase RuvA [Bacteroides xylanisolvens SD
           CC 1b]
 gi|229445833|gb|EEO51624.1| holliday junction DNA helicase ruvA [Bacteroides sp. D1]
 gi|262355764|gb|EEZ04855.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 2_1_22]
 gi|292639806|gb|EFF58084.1| Holliday junction DNA helicase RuvA [Bacteroides ovatus SD CC 2a]
 gi|294443035|gb|EFG11818.1| Holliday junction DNA helicase RuvA [Bacteroides xylanisolvens SD
           CC 1b]
          Length = 200

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 104/205 (50%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  L     +ID  GV Y     + T S + +    C L++   +R+D   L
Sbjct: 1   MIEYIRGELAELSPATAVIDCNGVGYAANISLNTYSAI-QGKKNCKLYIHEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F+LL SV G+G   A  +LS ++  ELV  I  +N+ ++  + GI +K 
Sbjct: 60  YGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K  ++S       S     Q    +       A+SAL  LG+    +   
Sbjct: 120 AQRVIVDLKDKIKTMSGSAGGGASAGLLLQ---PANAEVQEEAVSALTMLGFAAAPSQKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+++LK+E + A   ++I+LAL+ +
Sbjct: 177 VLAILKEEPD-APVEKVIKLALKRL 200


>gi|239978432|ref|ZP_04700956.1| Holliday junction DNA helicase RuvA [Streptomyces albus J1074]
 gi|291450328|ref|ZP_06589718.1| holliday junction DNA helicase subunit B [Streptomyces albus J1074]
 gi|291353277|gb|EFE80179.1| holliday junction DNA helicase subunit B [Streptomyces albus J1074]
          Length = 208

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 60/212 (28%), Positives = 101/212 (47%), Gaps = 13/212 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L  D  +++V G+   + C   TLS L ++G+   L     +R+D + L
Sbjct: 1   MIASVSGTVAALAPDSAVVEVGGIGMAVQCTPDTLSGL-RVGEQARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+      L  ++   + K +  +PGI  K 
Sbjct: 60  YGFADDDERQTFELLQTASGVGPRLAQSMLAVHHPDALRRAVATGDEKALTAVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK +  +     Q     V    A       ++    +ALV LGY   +A  A
Sbjct: 120 AQKLLLELKDRLGAPRGATQAARPAVASGPAP------WSEQLHTALVGLGYAPREADDA 173

Query: 181 VVSVLKK------EKNIADDSQIIRLALRAIS 206
           V +V  +      E       Q++R AL++++
Sbjct: 174 VAAVTPQAEAALAEGGRPAVPQLLRAALQSLN 205


>gi|260173998|ref|ZP_05760410.1| Holliday junction DNA helicase RuvA [Bacteroides sp. D2]
 gi|315922266|ref|ZP_07918506.1| holliday junction DNA helicase ruvA [Bacteroides sp. D2]
 gi|313696141|gb|EFS32976.1| holliday junction DNA helicase ruvA [Bacteroides sp. D2]
          Length = 200

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  L     +ID  GV Y     + T S + +    C L++   +R+D   L
Sbjct: 1   MIEYIRGELAELSPATAVIDCNGVGYAANISLNTYSAI-QGKKSCKLYIYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F+LL SV G+G   A  +LS ++  ELV  I  +N+ ++  + GI +K 
Sbjct: 60  YGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K  ++        S     Q    +       A+SAL  LG+    +   
Sbjct: 120 AQRVIVDLKDKIKTMGMSAAGGASAGLLLQ---PANAEVQEEAVSALTMLGFAAAPSQKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+++LK+E + A   ++I+LAL+ +
Sbjct: 177 VLAILKEEPD-APVEKVIKLALKRL 200


>gi|67458996|ref|YP_246620.1| Holliday junction DNA helicase motor protein [Rickettsia felis
           URRWXCal2]
 gi|75536568|sp|Q4ULW8|RUVA_RICFE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|67004529|gb|AAY61455.1| Holliday junction DNA helicase RuvA [Rickettsia felis URRWXCal2]
          Length = 203

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 73/203 (35%), Positives = 121/203 (59%), Gaps = 6/203 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G I+   +DY++IDV GV Y++Y   +TL  L + G+F  LF+ETH+R++ I L
Sbjct: 1   MIGKLSGKIDSQGDDYIIIDVNGVGYLVYASGKTLGKLAE-GEFYKLFIETHVREEHIHL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++ +F LLQSV G+G R+A+ +LS +T +++  +I  ++  +   I G+  K+
Sbjct: 60  YGFLTLEEKNFFNLLQSVNGIGTRMALSILSSLTPSDIQIAINNEDKNIFKAISGVGAKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELKGK   +SS        +N +     +        I ALVNLG+ + +A  A
Sbjct: 120 AERIVLELKGKVAKISSGSVIIKDSLNIKNITPVASN----EVIKALVNLGFSRFEAQNA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  ++ +   I    ++I+ AL+
Sbjct: 176 VQGIIIQNPEI-SIDELIKTALK 197


>gi|238762969|ref|ZP_04623936.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia
           kristensenii ATCC 33638]
 gi|238698727|gb|EEP91477.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia
           kristensenii ATCC 33638]
          Length = 189

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 53/189 (28%), Positives = 92/189 (48%), Gaps = 5/189 (2%)

Query: 18  LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQS 77
           L++  GV Y +  P+     L  +G    +F +  +R+D   L+GF    +R  F  L  
Sbjct: 2   LLETNGVGYEVQLPMTCFYELPDLGQEAIIFTQFVVREDAQLLYGFNDKQERALFRELIK 61

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137
           V GVG ++A+ +LS ++A + V ++  ++   + ++PG+  K A R++ E+K +   L+ 
Sbjct: 62  VNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKTAERLVVEMKDRFKGLNG 121

Query: 138 VVQQDMSCVNKEQAHIC--SMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDS 195
            +  +   +    +     S       A SALV LGY   +A+  V  + K     AD  
Sbjct: 122 DLFNNTGDIQLPASSSSQISDADIEAEAASALVALGYKPQEASRLVSKIAK---PGADCE 178

Query: 196 QIIRLALRA 204
            +IR ALRA
Sbjct: 179 TLIRDALRA 187


>gi|160882733|ref|ZP_02063736.1| hypothetical protein BACOVA_00691 [Bacteroides ovatus ATCC 8483]
 gi|156111903|gb|EDO13648.1| hypothetical protein BACOVA_00691 [Bacteroides ovatus ATCC 8483]
          Length = 200

 Score =  153 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  L     +ID  GV Y     + T S + +    C L++   +R+D   L
Sbjct: 1   MIEYIRGELAELSPATAVIDCNGVGYAANISLNTYSAI-QGKKSCKLYIYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F+LL SV G+G   A  +LS ++  ELV  I  +N+ ++  + GI +K 
Sbjct: 60  YGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K  ++       +S     Q    +       A+SAL  LG+    +   
Sbjct: 120 AQRVIVDLKDKIKTMGMSAAGGVSAGLLLQ---PANAEVQEEAVSALTMLGFAAAPSQKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+++LK+E + A   ++I+LAL+ +
Sbjct: 177 VLAILKEEPD-APVEKVIKLALKRL 200


>gi|323486643|ref|ZP_08091964.1| Holliday junction DNA helicase RuvA [Clostridium symbiosum
           WAL-14163]
 gi|323400024|gb|EGA92401.1| Holliday junction DNA helicase RuvA [Clostridium symbiosum
           WAL-14163]
          Length = 203

 Score =  153 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 104/206 (50%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +     D ++++   V   IY P+  L  L  +G+   ++    +R+D + L
Sbjct: 1   MISYVKGALAEKSGDRIVVEAGPVGLGIYVPLSVLEVLPPLGEEVKIYTYLQVREDDLSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  D   F  L  V G+G + A+G+LS ++  +L  +I+  ++K I++ PG+  K 
Sbjct: 61  YGFLNRQDLDMFRRLIGVNGIGPKGALGILSALSPDDLRLAILTGDAKAISKAPGVGAKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K  +   +          E+  +  M      A +ALV LGY   +A+ A
Sbjct: 121 AQRIILDLKDKVSAEEMLASV---ADTDERTSVPLMQEAGREAATALVALGYSNLEASKA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V +V  +     D   ++R +L+ ++
Sbjct: 178 VKNV--QITEDMDAEAVLRASLKYLA 201


>gi|139438977|ref|ZP_01772437.1| Hypothetical protein COLAER_01443 [Collinsella aerofaciens ATCC
           25986]
 gi|133775688|gb|EBA39508.1| Hypothetical protein COLAER_01443 [Collinsella aerofaciens ATCC
           25986]
          Length = 206

 Score =  153 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +        ++DV GV + +     T + L   G    L+    +R+D + L
Sbjct: 1   MISQLHGTLVEATMSSAVVDVSGVGFELGISGSTAATLPTPGGEVRLYTRMQVREDAMTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L SV GVG R+A+ VLS  T  +L   ++ ++ K +A++PG+  K 
Sbjct: 61  FGFASKDERTMFDRLVSVSGVGPRLALAVLSTYTVGQLYSLVMAEDDKGMAKVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK         V  D            + PS   +A +AL+++G+   +   A
Sbjct: 121 AQRLILELKSTFAKDKGFVPVDAIPGQVAMPVPAAAPSAIDDARAALLSMGFSPQETDVA 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +      +        ++  AL+ +
Sbjct: 181 LS---GYDGQDMRVEDLLGAALKRL 202


>gi|237720151|ref|ZP_04550632.1| holliday junction DNA helicase ruvA [Bacteroides sp. 2_2_4]
 gi|229450703|gb|EEO56494.1| holliday junction DNA helicase ruvA [Bacteroides sp. 2_2_4]
          Length = 200

 Score =  153 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  L     +ID  GV Y     + T S + +    C L++   +R+D   L
Sbjct: 1   MIEYIRGELAELSPATAVIDCNGVGYAANISLNTYSAI-QGKKSCKLYIYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F+LL SV G+G   A  +LS ++  ELV  I  +N+ ++  + GI +K 
Sbjct: 60  YGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K  ++ +      S     Q    +       A+SAL  LG+    +   
Sbjct: 120 AQRVIVDLKDKIKTMGTSAAGGASAGLLLQ---PANVEVQEEAVSALTMLGFAAAPSQKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+++LK+E + A   ++I+LAL+ +
Sbjct: 177 VLAILKEEPD-APVEKVIKLALKRL 200


>gi|163745818|ref|ZP_02153177.1| Holliday junction DNA helicase motor protein [Oceanibulbus
           indolifex HEL-45]
 gi|161380563|gb|EDQ04973.1| Holliday junction DNA helicase motor protein [Oceanibulbus
           indolifex HEL-45]
          Length = 225

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 116/223 (52%), Gaps = 18/223 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G I+    D+VLIDV+GV Y++Y   RT++ L  +G+   L+ +  +R+D ++L
Sbjct: 1   MIGKLSGRIDYRAADHVLIDVRGVGYLVYVSDRTMAALPSVGEVVALYTDLVVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++W  LL SVQGVGA+ ++ +L  +    +  +I L +   +    GI  KI
Sbjct: 61  FGFQTLVEKEWHRLLTSVQGVGAKASLAILGTLGPDGVSRAIALGDWNAVKAAKGIGPKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA-----------------HICSMPSFAINA 163
           A R++ +LK KA  + ++       + + +A                       S    A
Sbjct: 121 AQRVVLDLKDKAPGVMAMTGTVADAMGEAEAAADESVIEAATPRRAPKPAAPNASAQSEA 180

Query: 164 ISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           +SAL NLGYG   A  AV     +  + AD   +IR AL+ ++
Sbjct: 181 LSALGNLGYGPGDAAGAVAQAAGEMPD-ADTPTLIRAALKLLA 222


>gi|261417028|ref|YP_003250711.1| Holliday junction DNA helicase RuvA [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261373484|gb|ACX76229.1| Holliday junction DNA helicase RuvA [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 202

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 93/205 (45%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +I+G +      +V+++  GV Y +     T   L + G    L     +R+D + L
Sbjct: 1   MIERIRGVLVQKSPTFVVVECAGVGYGVNISAFTAGKLPEEGAEVILHTNLVVREDSMTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    ++  F++L  V GVG ++A  +LS  T  +L+  I   N   + +I G+  K 
Sbjct: 61  FGFADTTEKNLFLMLLEVNGVGPKLAQRILSGSTPADLLNMIASDNKSALGKIKGLGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
             ++   LK KA ++   +             + ++    + A+ AL  LG     A  A
Sbjct: 121 CEQMTLTLKEKASNMLQALGD---VEGSGITSVGALTGAKLEAVLALHTLGVKDPAAEKA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           VV  ++   + AD + +I  AL+ +
Sbjct: 178 VVKAVEVLGDGADAAALIPEALKYL 202


>gi|313894615|ref|ZP_07828178.1| Holliday junction DNA helicase RuvA [Veillonella sp. oral taxon 158
           str. F0412]
 gi|313440805|gb|EFR59234.1| Holliday junction DNA helicase RuvA [Veillonella sp. oral taxon 158
           str. F0412]
          Length = 202

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 109/205 (53%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +  L+++   +DV GV Y +Y P  T   L + G   TLF   ++R+D ++L
Sbjct: 1   MIGYVRGIVTHLFKESCYVDVHGVGYRVYVPTTTRQQLIE-GHEATLFTYLNVREDAMQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ + + F+LL SV G+G +V +G+LS +T      ++I    + + ++PGI  K 
Sbjct: 60  YGFWTEEEYELFILLISVSGIGPKVGLGILSGMTPEAFKLAVINGQVQQLTKLPGIGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K   ++ +  +  + +                AI ALV+LGY +      
Sbjct: 120 AERLVLELKDKLAKMTHISTESSAVIQPIGVTASGATG---EAIEALVSLGYSERDVADI 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V S+   +    D S++I+++L  +
Sbjct: 177 VESL---DDGKRDVSELIKVSLIEL 198


>gi|210615646|ref|ZP_03290692.1| hypothetical protein CLONEX_02910 [Clostridium nexile DSM 1787]
 gi|210150189|gb|EEA81198.1| hypothetical protein CLONEX_02910 [Clostridium nexile DSM 1787]
          Length = 203

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 108/205 (52%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  + ED +++DV G+ Y I+ P +++  L  IG+   +    ++R+D ++L
Sbjct: 1   MISYIRGELSAIEEDKIIVDVNGIGYGIFMPGQSMGMLPPIGEEVKIHTYLNVREDAMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  D + F L+  V G+G +  + +LS+++  +L  +++  ++K I+  PGI  K 
Sbjct: 61  FGFLTRDDLKIFKLVIGVSGIGPKGGLSILSQLSPDDLRFAVLANDAKAISAAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK K       + +  S   +      +       A+ AL  LGYG  ++  A
Sbjct: 121 AEKLIIELKDKLS--VEDILEKNSETVEYAGVADTANEVQAEAVQALTALGYGSTESMKA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V   E+   +   +++ AL+ +
Sbjct: 179 VKKVTVTEETTVE--DVLKQALKYM 201


>gi|94501014|ref|ZP_01307538.1| Holliday junction DNA helicase motor protein [Oceanobacter sp.
           RED65]
 gi|94426761|gb|EAT11745.1| Holliday junction DNA helicase motor protein [Oceanobacter sp.
           RED65]
          Length = 203

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 97/205 (47%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +       +LI+V G+ Y ++ P+ T+  L ++G   TL     +R+D   L
Sbjct: 1   MIGRISGTLLEKLPPELLIEVNGLGYEVHAPMTTIYALPEVGQGVTLHTHFVVREDAQIL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F  L  V GVG ++A+ +LS I     V S+   +S  + +IPGI  K 
Sbjct: 61  YGFSDKQQRALFRALIKVSGVGPKLALAILSGIETDTFVRSVHDGDSATLVRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+K +       V  D+  +        S   +   A  AL+ LGY       A
Sbjct: 121 AERLIVEMKDRLKEWQ--VDSDLPLMAAANPAPASQDQWIQEAEGALIALGYKPT---EA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             ++   ++ +     +IRLAL+ +
Sbjct: 176 AKAIAAIKEPVNGSEDLIRLALKGM 200


>gi|325068881|ref|ZP_08127554.1| Holliday junction DNA helicase subunit RuvA [Actinomyces oris K20]
          Length = 217

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 54/212 (25%), Positives = 98/212 (46%), Gaps = 8/212 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +     +I+  GV   I     TLS L ++G+   +  E  +R+D + L
Sbjct: 1   MIASLRGTVLSVGLTSAVIETGGVGMSIQATPTTLSGL-RVGEEALVHTEMVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  L S +GVGA++A+ +L+  T   L  +I  Q+   + ++PG+  K 
Sbjct: 60  FGFADTDERDSFRTLMSAKGVGAKLALAMLAVHTPNALRRAIASQDVAALTRVPGLGPKG 119

Query: 121 ASRIMTELKGKAISLS----SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ ++  K   ++                 +      P    + ++ALV LG+ +  
Sbjct: 120 AQRVILDVADKLGPVTGDDLGAAGTTAQTAPGMEVVAAGGPEPHADVVAALVQLGWNEAS 179

Query: 177 ATTAVVSVLKKEKNI---ADDSQIIRLALRAI 205
           A  AV SV     +     D + ++R +LR +
Sbjct: 180 ARQAVASVTADAADGGQEPDMAAVLRASLRWL 211


>gi|294341429|emb|CAZ89846.1| Holliday junction ATP-dependent DNA helicase ruvA [Thiomonas sp.
           3As]
          Length = 190

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 97/206 (47%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +       +L+DV GV Y +  P+ TL  L   G   TL + T +R+D   L
Sbjct: 1   MIGRLHGTLLDKSPPQILLDVGGVGYEVDVPMSTLYDLPAAGHAVTLLIHTVIREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  + G+G R+A+ VLS ++ +E+ +++  Q++    ++PGI  K 
Sbjct: 61  YGFATAAERSTFRELLKISGIGPRIALAVLSGLSVSEIAQAVTQQDAVRFTRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R              +++          +   +    A + + AL+ LGY + +A  A
Sbjct: 121 AER-------------LLLELKGKLGADLGSAATAAAGSASDVLQALIALGYSEREAAAA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
             ++             IR AL++++
Sbjct: 168 AKAL----PEGCSVDDGIRQALKSLA 189


>gi|225025938|ref|ZP_03715130.1| hypothetical protein EUBHAL_00174 [Eubacterium hallii DSM 3353]
 gi|224956724|gb|EEG37933.1| hypothetical protein EUBHAL_00174 [Eubacterium hallii DSM 3353]
          Length = 230

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 62/203 (30%), Positives = 102/203 (50%), Gaps = 5/203 (2%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           I  IKG +    +D V+I+  G+ Y I  P R L  +   G+   L    ++R+DQ+ LF
Sbjct: 28  ISYIKGTVAYKGKDSVVIENHGIGYQIKVPSRVLEGVNS-GEEAMLHTYLYVREDQLALF 86

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF S  + + F +L  + G+G + A+ VLS ++  +L  ++  +++K IA+ PGI  K A
Sbjct: 87  GFSSIQELETFQILLGISGIGPKAALSVLSTMSVEDLYYAVFSEDAKSIAKTPGIGPKGA 146

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
            R++ ELK K       ++              +      + + ALV LGY   +A  AV
Sbjct: 147 KRMIIELKDKLN--LEALESVSGAEEAAPQSSFTEGDSIADTVQALVALGYSNGEAYRAV 204

Query: 182 VSVLKKEKNIADDSQIIRLALRA 204
            SV + EK   D  Q+++ AL+ 
Sbjct: 205 HSVPEAEK--LDAEQLLKEALKK 225


>gi|218128788|ref|ZP_03457592.1| hypothetical protein BACEGG_00360 [Bacteroides eggerthii DSM 20697]
 gi|317475376|ref|ZP_07934640.1| Holliday junction DNA helicase RuvA [Bacteroides eggerthii
           1_2_48FAA]
 gi|217989016|gb|EEC55332.1| hypothetical protein BACEGG_00360 [Bacteroides eggerthii DSM 20697]
 gi|316908404|gb|EFV30094.1| Holliday junction DNA helicase RuvA [Bacteroides eggerthii
           1_2_48FAA]
          Length = 198

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I  L     +ID  G+ Y +   + T + + +    C L++   +R+D   L
Sbjct: 1   MIEYIKGEIAELSPANAIIDCNGLGYAVNISLNTYAAI-QGKKECKLYIYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   +R+ F+LL SV G+G   A  +LS ++ +EL+ +I   N+ ++  + GI +K 
Sbjct: 60  YGFIDKQERELFLLLISVSGIGGNTARMILSALSPSELINAISTGNANLLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K            +      A   +       AI+AL  LG+ Q  +   
Sbjct: 120 AQRVIVDLKDKIK-----PGGIAAGTTDISAFTAANAQVQEEAIAALTMLGFAQAPSQKV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+++LK++   A   Q+I+LAL+ +
Sbjct: 175 VMAILKEDAG-APVEQVIKLALKRL 198


>gi|315651980|ref|ZP_07904982.1| Holliday junction ATP-dependent DNA helicase RuvA [Eubacterium
           saburreum DSM 3986]
 gi|315485809|gb|EFU76189.1| Holliday junction ATP-dependent DNA helicase RuvA [Eubacterium
           saburreum DSM 3986]
          Length = 194

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 96/205 (46%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +     + V ++  G+ Y I+   R +  L K G    +     + +D   L
Sbjct: 1   MIAYIRGIVTEKNVNTVTVECSGIGYEIFATGRDIDKLSK-GSEVLIHTYLKISEDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  D   F  L  V GVG + A+ +++ + + +L  +I+ ++ K I    G+  KI
Sbjct: 60  YGFLNKDDMVMFKKLIIVNGVGPKAALSIMNTLNSFDLKIAIVTEDYKAICAAVGVGSKI 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELK K              +   +A   S  S    A+ ALV+LGY   +A  A
Sbjct: 120 AKKIILELKEKVK---------PDDIGTLEAADTSDNSVVSEALEALVSLGYSNSEAYKA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +  + KN      I++LAL+ +
Sbjct: 171 IKEI--EVKNTDTTEDILKLALKKM 193


>gi|313673192|ref|YP_004051303.1| holliday junction DNA helicase ruva [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312939948|gb|ADR19140.1| Holliday junction DNA helicase RuvA [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 192

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 105/206 (50%), Gaps = 16/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K++G +     +Y+++DV G+ + I   +   + L  +     +   T +R+D I +
Sbjct: 1   MIAKLRGKLHEKKPNYIILDVNGIFFEISISLNCFTSLPDLNSELIISTYTIVREDGISI 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+D +++ F+LL SV  VG ++A+ +LS     +L  +I  ++  +IA  PG+  K 
Sbjct: 61  YGFLNDDEKRLFLLLNSVSKVGPKLALSILSTCEIVKLKSAIKNRDINLIATAPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL+ K      V+  D   ++              + ISALVNLGY +  A +A
Sbjct: 121 AERIILELRDKIEEFEVVMDADTGGLD-------------DDIISALVNLGYKKVDALSA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +   +       + +R AL+ ++
Sbjct: 168 LKRL---DDRYKTFEERLREALKLLN 190


>gi|157803866|ref|YP_001492415.1| Holliday junction DNA helicase RuvA [Rickettsia canadensis str.
           McKiel]
 gi|166200255|sp|A8EZ47|RUVA_RICCK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|157785129|gb|ABV73630.1| Holliday junction DNA helicase motor protein [Rickettsia canadensis
           str. McKiel]
          Length = 204

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 70/203 (34%), Positives = 117/203 (57%), Gaps = 7/203 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G  +   +DYV+IDV GV Y++Y   +TL  L + G+F  LF+ETH+R++ I L
Sbjct: 1   MIGKLSGKADSQGDDYVIIDVNGVGYLVYASGKTLDKLVE-GEFYKLFIETHVREEHIHL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++ +F LLQSV G+G R+A+ +LS +T  ++  ++  ++  +   I G+  K+
Sbjct: 60  YGFLTLEEKNFFNLLQSVNGIGTRMALSILSNLTPDDIQIAVNNEDKNIFKAISGVGAKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K   +SS      S   K    + S        + AL+NLG+ + +A   
Sbjct: 120 AERIVLELKDKVTKISSSSAIKDSLNIKNITPVTS-----NEVMKALINLGFSRFEAQNV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  ++ +   I    ++I+ AL+
Sbjct: 175 VQGIITQNPKI-SIDELIKTALK 196


>gi|300856546|ref|YP_003781530.1| Holliday junction DNA helicase [Clostridium ljungdahlii DSM 13528]
 gi|300436661|gb|ADK16428.1| Holliday junction DNA helicase [Clostridium ljungdahlii DSM 13528]
          Length = 198

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 102/205 (49%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG  +G+ +DY++++  G+ Y I     T++   K+G+   L+++  +R+D I L
Sbjct: 1   MYEYIKGIYKGVNKDYIVVENNGIGYKINTSGSTIAKTPKVGENIVLYLQQIVREDFIGL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +   F LL ++ G+GAR A+ +LS      L  +II ++ K + + PGI  K 
Sbjct: 61  YGFLTKEELSMFNLLLTINGIGARAALSILSISDVNNLKYAIISEDEKNLVRAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K         +D            +        + AL+ LGY + +   A
Sbjct: 121 AQRIILELKDKIDVGELTNSED-------DIDNINATQNTSEVLEALIALGYSEKEGNKA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + S+ K     +    +I+ AL+ +
Sbjct: 174 LASIDKT--KESSTEDMIKKALKFL 196


>gi|21232455|ref|NP_638372.1| Holliday junction DNA helicase RuvA [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66767461|ref|YP_242223.1| Holliday junction DNA helicase RuvA [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188990567|ref|YP_001902577.1| Holliday junction DNA helicase RuvA [Xanthomonas campestris pv.
           campestris str. B100]
 gi|325921870|ref|ZP_08183684.1| Holliday junction DNA helicase RuvA [Xanthomonas gardneri ATCC
           19865]
 gi|24212373|sp|Q8P6E5|RUVA_XANCP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|81306559|sp|Q4UXM0|RUVA_XANC8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560138|sp|B0RPY4|RUVA_XANCB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|21114237|gb|AAM42296.1| holliday junction binding protein, DNA helicase [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66572793|gb|AAY48203.1| holliday junction binding protein, DNA helicase [Xanthomonas
           campestris pv. campestris str. 8004]
 gi|167732327|emb|CAP50519.1| Holliday junction DNA helicase RuvA [Xanthomonas campestris pv.
           campestris]
 gi|325547651|gb|EGD18691.1| Holliday junction DNA helicase RuvA [Xanthomonas gardneri ATCC
           19865]
          Length = 194

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 61/204 (29%), Positives = 95/204 (46%), Gaps = 13/204 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      +++IDV GV Y +  P+ T   L  +G    LF     ++D + L
Sbjct: 1   MIGRLRGILAYKQPPWLVIDVGGVGYELEAPMSTFYDLPDVGRDVILFTHYAQKEDSVSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + +R+ F  +Q V G+GA++A+ VLS +T  E    I   +   + +IPGI  K 
Sbjct: 61  YGFLREGERRLFRDVQKVTGIGAKIALAVLSGVTVDEFARLITSGDITALTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +A   SS                   P     A  AL  LGY   +A   
Sbjct: 121 AERMVVELRDRAADFSSGAP----------ITGQLGPDAVSEATVALQQLGYKPAEAARM 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
                 +   +A     IR AL+A
Sbjct: 171 AREAGAEGDEVATV---IRKALQA 191


>gi|86359072|ref|YP_470964.1| Holliday junction DNA helicase motor protein [Rhizobium etli CFN
           42]
 gi|123751944|sp|Q2K4J9|RUVA_RHIEC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|86283174|gb|ABC92237.1| holliday junction DNA helicase protein [Rhizobium etli CFN 42]
          Length = 204

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 96/206 (46%), Positives = 143/206 (69%), Gaps = 3/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + EDYVL+DVQGVCY+ YC  RTLS LG  G+ C LF+ET++R+DQ++L
Sbjct: 1   MIGKLKGTIDEIGEDYVLVDVQGVCYVAYCSARTLSKLGSAGEACVLFIETYVREDQLKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF++ L+R+WF LLQSVQGVGA+VA+ VLS +T  EL  +I LQ+   +++ PG+  K+
Sbjct: 61  FGFMTALEREWFNLLQSVQGVGAKVALAVLSTLTPGELANAIALQDRAAVSRAPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++TELK +A + +    + ++   K +       +   +A+SAL NLGY +DQA  A
Sbjct: 121 AMRLVTELKNRAPAYAG---EAINIALKRELGEGVAAAPVADAVSALTNLGYSRDQAANA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + +K     AD +++IRL L+ ++
Sbjct: 178 VAAAMKTAGEGADSAKLIRLGLKELA 203


>gi|160942948|ref|ZP_02090187.1| hypothetical protein FAEPRAM212_00425 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445849|gb|EDP22852.1| hypothetical protein FAEPRAM212_00425 [Faecalibacterium prausnitzii
           M21/2]
          Length = 203

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 93/206 (45%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G I     + V++   GV Y   CP      L  +G   TL+    + ++ + L
Sbjct: 1   MIYCLTGKIVKKSLNAVVLSCGGVGYYTQCPASVAGALPGVGQETTLYTVMSVTENDVSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++  +  F +L +V GVG +V + +LS +    +  +I   + K      G+  K+
Sbjct: 61  YGFATEEQQACFEMLTAVSGVGPKVGLAILSVMEPQRVALAISAGDHKAFKAASGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K       V           A        +  AI+ALV+LGY Q +A  A
Sbjct: 121 AQRIVLELKDKVAK--GFVDGISLEDVAGSAADTPATQSSAQAIAALVSLGYSQSEAALA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +           +II+LALR+++
Sbjct: 179 IAKIDAALP----VEEIIKLALRSMA 200


>gi|295103887|emb|CBL01431.1| Holliday junction DNA helicase subunit RuvA [Faecalibacterium
           prausnitzii SL3/3]
          Length = 203

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 93/206 (45%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G I     + V++   GV Y   CP      L  +G   TL+    + ++ + L
Sbjct: 1   MIYCLTGKIVKKSLNAVVLSCGGVGYYTQCPASVAGALPGVGQETTLYTVMSVTENDVSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++  +  F +L +V GVG +V + +LS +    +  +I   + K      G+  K+
Sbjct: 61  YGFATEEQQACFEMLTAVSGVGPKVGLAILSVMEPQRVALAISAGDHKAFKAASGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K       V           A        +  AI+ALV+LGY Q +A  A
Sbjct: 121 AQRIVLELKDKVAK--GFVDGISLEDVAGTAADTPATQSSAQAIAALVSLGYSQSEAALA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +           +II+LALR+++
Sbjct: 179 IAKIDATLP----VEEIIKLALRSMA 200


>gi|294628363|ref|ZP_06706923.1| Holliday junction DNA helicase RuvA [Streptomyces sp. e14]
 gi|292831696|gb|EFF90045.1| Holliday junction DNA helicase RuvA [Streptomyces sp. e14]
          Length = 201

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 59/209 (28%), Positives = 96/209 (45%), Gaps = 14/209 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L  D  +I+V GV   + C   TLS L +IG    L     +R+D + L
Sbjct: 1   MIAFVSGAVAALAPDTAVIEVGGVGMAVQCTPNTLSTL-RIGQPAKLHTSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+  T   L  ++   + K +  +PGI  K 
Sbjct: 60  YGFADDDERQVFELLQTASGVGPRLAQAMLAVHTPDALRRAVATGDEKALTAVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK +            + V            +     +AL+ LGY   +A  A
Sbjct: 120 AQKLLLELKDRLG----------APVGAPAVGAPVTQGWRDQLHAALIGLGYATREADEA 169

Query: 181 VVSV---LKKEKNIADDSQIIRLALRAIS 206
           V +V    +         Q+++ AL+ ++
Sbjct: 170 VAAVTPQAEAAGGAPQVGQLLKAALQTLN 198


>gi|194333233|ref|YP_002015093.1| Holliday junction DNA helicase RuvA [Prosthecochloris aestuarii DSM
           271]
 gi|229560116|sp|B4S4U8|RUVA_PROA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|194311051|gb|ACF45446.1| Holliday junction DNA helicase RuvA [Prosthecochloris aestuarii DSM
           271]
          Length = 200

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G +     D  ++DV GV Y +     T   L   GD   L    H+++D ++L
Sbjct: 1   MYAYFRGELISSSRDNAIVDVGGVAYRLLISNSTYRQLPSSGDQVKLLAHLHVKEDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+ + +RQ F+LL S+ GVG ++A+ +LS +   E+ E+I+    + +  I G+  K 
Sbjct: 61  YGFIEEEERQLFLLLLSISGVGPKLALAILSGLPVEEIQEAIMANKPETLFGISGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ EL+ + + L        +          S+ S + +A+ AL+ LG+ +  A  A
Sbjct: 121 AARIILELRDRILKLQQTRPGKTAGAG-------SVASLSEDALQALMTLGFSRASAQQA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V   L           I+R AL+ I
Sbjct: 174 VTRALLS-AENPGVEDIVREALQNI 197


>gi|150016408|ref|YP_001308662.1| Holliday junction DNA helicase RuvA [Clostridium beijerinckii NCIMB
           8052]
 gi|189045748|sp|A6LTM6|RUVA_CLOB8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|149902873|gb|ABR33706.1| Holliday junction DNA helicase RuvA [Clostridium beijerinckii NCIMB
           8052]
          Length = 198

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 104/205 (50%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG   G+ +DYV+++  G+ Y I+    T+S + K G+   L++E  +R+D I L
Sbjct: 1   MYEYIKGKYIGINKDYVIVENSGIGYKIFTSGATMSSMPKNGEEIMLYLEQIVREDFIGL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  + + F LL +V GVG + A+ +LS      L  +I++ + K I +  GI  K 
Sbjct: 61  YGFDSKEELEMFKLLLTVSGVGPKAALSLLSISRVNNLKYAIMIGDEKHICRGVGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ E+K K         + +    +              A+SAL+ LGY + +A + 
Sbjct: 121 AARIILEIKDKLK-----PDELVDSSLEIDTKDNENVMALSEALSALIALGYSEKEAESV 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  + K +        II+ AL+A+
Sbjct: 176 LKKIDKND----SVENIIKNALKAL 196


>gi|34580551|ref|ZP_00142031.1| holliday junction DNA helicase RuvA [Rickettsia sibirica 246]
 gi|28261936|gb|EAA25440.1| holliday junction DNA helicase RuvA [Rickettsia sibirica 246]
          Length = 203

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 71/203 (34%), Positives = 121/203 (59%), Gaps = 6/203 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G ++   +DYV+IDV GV Y++Y   +TL  L + G+F  LF+ETH+R++ I L
Sbjct: 1   MIGQLSGKVDAQGDDYVIIDVNGVGYLVYASGKTLGKLAE-GEFYKLFIETHVREEHIHL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++ +F LLQSV G+G R+A+ +LS +T +++  ++  ++  +   I G+  K+
Sbjct: 60  YGFLALEEKIFFNLLQSVNGIGTRMALFILSSLTPSDIQIAVNNEDKNIFKAISGVGAKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELKGK   +SS        +N +     +        I ALVNLG+ + +A  A
Sbjct: 120 AERIVLELKGKVAKISSGSAIIKESLNIKNITPVASN----EVIKALVNLGFSRFEAQNA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  ++ +   I    ++I+ AL+
Sbjct: 176 VQGIITQNPEI-SIDELIKTALK 197


>gi|261368084|ref|ZP_05980967.1| holliday junction DNA helicase RuvA [Subdoligranulum variabile DSM
           15176]
 gi|282570074|gb|EFB75609.1| holliday junction DNA helicase RuvA [Subdoligranulum variabile DSM
           15176]
          Length = 201

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 90/206 (43%), Gaps = 8/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G I     D  +I   GV Y +  P  T   L   G   T++   ++ ++ + L
Sbjct: 1   MIYCLTGKILKKTLDTAVISCGGVGYAVQIPATTGEALPAPGQEGTVYTVMNVSENDVSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++  R  F +L +V GVG +  + +LS ++  ++  +    + K   +  G+  K+
Sbjct: 61  YGFATEEQRDCFKMLTAVSGVGPKAGLAILSVMSPEKIALAASSGDHKAFTKASGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  ELK K          D +             S    A++ALV+LGY    A  A
Sbjct: 121 AQRITLELKDKVGK----GLADGTGFGGADLSAPMPSSAPAQAVAALVSLGYTPSDAAAA 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  V            II++ALR++S
Sbjct: 177 VARV----DETLSVQDIIKVALRSLS 198


>gi|312897339|ref|ZP_07756765.1| Holliday junction DNA helicase RuvA [Megasphaera micronuciformis
           F0359]
 gi|310621557|gb|EFQ05091.1| Holliday junction DNA helicase RuvA [Megasphaera micronuciformis
           F0359]
          Length = 199

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG +KG +E ++   V IDV GV Y +Y P+ TL+ L  +G+   L+   ++R+D I L
Sbjct: 1   MIGYVKGTVECIFASSVFIDVHGVGYRVYAPVSTLAHL-NVGEESLLYTYMNVREDAIVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +   FMLL  V GVG +VA G+LS         ++  ++  ++ ++PGI  K 
Sbjct: 60  YGFLTQDEYDLFMLLIGVNGVGPKVANGILSATGTDSFRAAVANKDIGLLTKMPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL+ K            S  +++      +        +AL  LGY + +    
Sbjct: 120 AERIVLELQDKVG------TPVSSGESEKTPEPSPIEGIGAEVTAALAGLGYSEREIEPI 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +    K+         +++  LRA+
Sbjct: 174 IAREAKEHD---SVESLLKACLRAL 195


>gi|58040113|ref|YP_192077.1| Holliday junction DNA helicase RuvA [Gluconobacter oxydans 621H]
 gi|81351699|sp|Q5FQC5|RUVA_GLUOX RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|58002527|gb|AAW61421.1| Holliday junction DNA helicase RuvA [Gluconobacter oxydans 621H]
          Length = 200

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 109/206 (52%), Gaps = 7/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +  +  +  ++DV GV Y++    RTL+ L +      + +ET +R+D I+L
Sbjct: 1   MIGQLTGLVGQIEGERCIVDVNGVGYVVSASTRTLAVLPQPPSVARVLIETIVREDAIQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R WF LL +VQ VGA+VA+ +LS     EL+ +I   +   + +  G+  ++
Sbjct: 61  FGFATTDERDWFRLLTTVQSVGAKVALAILSANNPGELLLAINAGDKGSLTRAAGVGPRL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI++EL+ K   +        +        I S PS   +A+ AL  LG+ + +A   
Sbjct: 121 ADRILSELRNKVAKMPGGGGTVSA------PGIVSGPSVENDALLALAGLGFRRAEAWPV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  VL +    A     IRL+L+ ++
Sbjct: 175 LSKVLAEN-ENATLDLAIRLSLKDLA 199


>gi|166712990|ref|ZP_02244197.1| Holliday junction DNA helicase motor protein [Xanthomonas oryzae
           pv. oryzicola BLS256]
 gi|289661899|ref|ZP_06483480.1| Holliday junction DNA helicase RuvA [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289669612|ref|ZP_06490687.1| Holliday junction DNA helicase RuvA [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 194

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 61/204 (29%), Positives = 95/204 (46%), Gaps = 13/204 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      +++IDV GV Y +  P+ T   L  +G    LF     ++D + L
Sbjct: 1   MIGRLRGILAYKQPPWLVIDVGGVGYELEAPMSTFYDLPDVGRDVILFTHYAQKEDSVSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + +R+ F  +Q V G+GA++A+ VLS +T  E    I   +   + +IPGI  K 
Sbjct: 61  YGFLREGERRLFRDVQKVTGIGAKIALAVLSGVTVDEFARLITSGDITALTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +A   SS                   P     A  AL  LGY   +A   
Sbjct: 121 AERMVVELRDRAADFSSGAP----------ITGQLGPDAISEATVALQQLGYKPAEAARM 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
                 +   +A     IR AL+A
Sbjct: 171 AREAGAEGDEVATV---IRKALQA 191


>gi|322807372|emb|CBZ04946.1| holliday junction DNA helicase RuvA [Clostridium botulinum H04402
           065]
          Length = 197

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 105/205 (51%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG    +Y+DY++I+   + Y IY    T++ L  IG+   L+ E  +R+D I +
Sbjct: 1   MYEYIKGKYIDMYKDYIVIENNNIGYKIYTSGSTMAKLPSIGENIMLYTEQIVREDFIGV 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +   F LL ++ GVGA+ ++ +LS    + L  +I + + K I + PGI  K 
Sbjct: 61  YGFLTKDELSMFKLLLTINGVGAKASLSLLSISNVSTLKYAIKVGDEKTITRAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K           +   +++  +  +     + A++ALV LGY + +A   
Sbjct: 121 AQRIILELKDKIE------IDVLEENDEQTINKVTDDKKVLEAVAALVTLGYSEKEANKV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + S  K         QII+ AL+ +
Sbjct: 175 INSCDKNN----SLEQIIKEALKYL 195


>gi|167764704|ref|ZP_02436825.1| hypothetical protein BACSTE_03094 [Bacteroides stercoris ATCC
           43183]
 gi|167697373|gb|EDS13952.1| hypothetical protein BACSTE_03094 [Bacteroides stercoris ATCC
           43183]
          Length = 200

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 103/205 (50%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I  L      ID  G+ Y +   + T + + +    C L++   +R+D   L
Sbjct: 1   MIEYIKGEIAELSPASATIDCNGLGYAVNISLNTYAAI-QGKKSCKLYIYEAIREDAYIL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F+LL SV G+G   A  +LS ++ +EL+  I  +N+ ++  + GI +K 
Sbjct: 60  YGFADKQERELFLLLISVSGIGGNTARMILSALSPSELINVISTENANLLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K  +         +      A   +       A++AL  LG+ Q  +   
Sbjct: 120 AQRVIVDLKDKIKTCGMASG---AVDITGPAFTAANAQVQEEAVAALTMLGFAQAPSQKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++LK++ N A   Q+I+LAL+ +
Sbjct: 177 VTAILKEDAN-APVEQVIKLALKRL 200


>gi|114765389|ref|ZP_01444504.1| Holliday junction DNA helicase motor protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114542232|gb|EAU45262.1| Holliday junction DNA helicase motor protein [Roseovarius sp.
           HTCC2601]
          Length = 224

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 69/222 (31%), Positives = 113/222 (50%), Gaps = 17/222 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G IE   ED++LIDV+GV Y++YC  R L+ L   G+   L+ +  +R+D ++L
Sbjct: 1   MIGRIAGRIEYKGEDHLLIDVRGVGYVVYCSDRVLAGLPGPGEAAALYTDLMVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + ++++WF LL +VQGVGA+ ++ +L  +    +  +I L +   I    GI  K 
Sbjct: 61  YGFPTLVEKEWFRLLMTVQGVGAKASLAILGTLGPDGVSRAIALGDGTAIKAAKGIGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS----------------MPSFAINAI 164
           A R++ ELK KA  + ++     +    +     S                       A+
Sbjct: 121 AQRVVNELKDKAPMVMAMGAGPTASPGDDVLEDPSPAPAARRAPAPRPAPAAAPAQSEAL 180

Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           SAL NLGY   +A  AV          A  +++IR AL+ ++
Sbjct: 181 SALSNLGYAPGEAAGAVAQAAGDLPE-ATTAELIRAALKLLA 221


>gi|327403822|ref|YP_004344660.1| Holliday junction DNA helicase subunit RuvA [Fluviicola taffensis
           DSM 16823]
 gi|327319330|gb|AEA43822.1| Holliday junction DNA helicase subunit RuvA [Fluviicola taffensis
           DSM 16823]
          Length = 192

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 97/205 (47%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +       ++I+  GV Y +   + T S +    +   +  +  +R+D   L
Sbjct: 1   MITHLNGRLIEKNPTNLIIECGGVGYFVKISLNTFSAISST-ESVKVLTQQIIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L SV G+G   A+ +LS ++ +E+  +I  ++ + I  I GI  K 
Sbjct: 60  YGFATSEERDIFNFLLSVSGIGPNTAILMLSSMSPSEIANAIQTEDVRSIQAIKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K + +      ++   N          +   +A++AL++LG+ +  A  A
Sbjct: 120 AQRVIIDLKDKMLKVEWTESTNIFAGN---------NTNRFDALTALISLGFDKKNAEKA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +   ++       +I+ AL+ +
Sbjct: 171 IEKIATGDE---SVEDLIKGALKIL 192


>gi|302550160|ref|ZP_07302502.1| Holliday junction DNA helicase RuvA [Streptomyces viridochromogenes
           DSM 40736]
 gi|302467778|gb|EFL30871.1| Holliday junction DNA helicase RuvA [Streptomyces viridochromogenes
           DSM 40736]
          Length = 201

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 56/209 (26%), Positives = 96/209 (45%), Gaps = 14/209 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L  D  +++V GV   + C   TLS L ++G    L     +R+D + L
Sbjct: 1   MIAFVSGTVAALAPDAAVVEVGGVGMAVQCTPNTLSTL-RMGQPAKLHTSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+  T   L  ++   + K +  +PGI  K 
Sbjct: 60  YGFADDDERQVFELLQTASGVGPRLAQAMLAVHTPDALRRAVATGDEKALTAVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK +              +            +     +AL+ LGY   +A  A
Sbjct: 120 AQKLLLELKDRLGE----------PIGAPAVGAPVSNGWRDQLHAALIGLGYATREADEA 169

Query: 181 VVSV---LKKEKNIADDSQIIRLALRAIS 206
           V +V    +  +      Q+++ AL+ ++
Sbjct: 170 VAAVTPQAEAVEGTPQVGQLLKAALQTLN 198


>gi|299148028|ref|ZP_07041091.1| holliday junction DNA helicase RuvA [Bacteroides sp. 3_1_23]
 gi|298514211|gb|EFI38097.1| holliday junction DNA helicase RuvA [Bacteroides sp. 3_1_23]
          Length = 200

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  L     +ID  GV Y     + T S + +    C L++   +R+D   L
Sbjct: 1   MIEYIRGELAELSPATAVIDCNGVGYAANISLNTYSAI-QGKKSCKLYIYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F+LL SV G+G   A  +LS ++  ELV  I  +N+ ++  + GI +K 
Sbjct: 60  YGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K   +        S     Q    +       A+SAL  LG+    +   
Sbjct: 120 AQRVIVDLKDKIKIMGMSAAGGASAGLLLQ---PANAEVQEEAVSALTMLGFAAAPSQKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+++LK+E + A   ++I+LAL+ +
Sbjct: 177 VLAILKEEPD-APVEKVIKLALKRL 200


>gi|291286413|ref|YP_003503229.1| Holliday junction DNA helicase RuvA [Denitrovibrio acetiphilus DSM
           12809]
 gi|290883573|gb|ADD67273.1| Holliday junction DNA helicase RuvA [Denitrovibrio acetiphilus DSM
           12809]
          Length = 192

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 51/206 (24%), Positives = 96/206 (46%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +        +ID   V + +     T   L + G    ++    MR+D + L
Sbjct: 1   MIYSVRGILIEKNPANAVIDTGAVAFEMSISASTYQQLPETGQKAHVYTHFVMREDGVYL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +++ F+LL ++  VG ++A+ +LS +   + + +++     +I+ IPGI  K 
Sbjct: 61  YGFSKMEEKKLFLLLITISKVGPKLALAILSGMDVNKFMNAVMNSEIGLISTIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL+ K  S+S     +                 A + +SAL+NLGY +     A
Sbjct: 121 AERIVVELRDKFGSMSVSTGDEPVAGG------------AEDVVSALLNLGYSRADCQKA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  + K +       ++ + AL+ +S
Sbjct: 169 VNKIYKTDSG---FEELFKGALKELS 191


>gi|153938510|ref|YP_001392349.1| Holliday junction DNA helicase RuvA [Clostridium botulinum F str.
           Langeland]
 gi|168179565|ref|ZP_02614229.1| holliday junction DNA helicase RuvA [Clostridium botulinum NCTC
           2916]
 gi|170754638|ref|YP_001782706.1| Holliday junction DNA helicase RuvA [Clostridium botulinum B1 str.
           Okra]
 gi|226950500|ref|YP_002805591.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A2 str.
           Kyoto]
 gi|166230543|sp|A7GHT9|RUVA_CLOBL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560023|sp|B1IMF4|RUVA_CLOBK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254766953|sp|C1FKG2|RUVA_CLOBJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|152934406|gb|ABS39904.1| Holliday junction DNA helicase RuvA [Clostridium botulinum F str.
           Langeland]
 gi|169119850|gb|ACA43686.1| Holliday junction DNA helicase RuvA [Clostridium botulinum B1 str.
           Okra]
 gi|182669614|gb|EDT81590.1| holliday junction DNA helicase RuvA [Clostridium botulinum NCTC
           2916]
 gi|226841819|gb|ACO84485.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A2 str.
           Kyoto]
 gi|295320341|gb|ADG00719.1| Holliday junction DNA helicase RuvA [Clostridium botulinum F str.
           230613]
          Length = 197

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 105/205 (51%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG    +Y+DY++I+   + Y IY    T++ L  IG+   L+ E  +R+D I +
Sbjct: 1   MYEYIKGKYIDMYKDYIVIENNNIGYKIYTSGSTMAKLPSIGENIMLYTEQIVREDFIGV 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +   F LL ++ GVGA+ ++ +LS    + L  +I + + K I + PGI  K 
Sbjct: 61  YGFLTKDELSMFKLLLTINGVGAKASLSLLSISNVSTLKYAIKMGDEKTITRAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K           +   +++  +  +     + A++ALV LGY + +A   
Sbjct: 121 AQRIILELKDKIE------IDILEEDDEQIINKVTDDKKVLEAVAALVTLGYSEKEANKV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + S  K         QII+ AL+ +
Sbjct: 175 INSCDKNN----SLEQIIKEALKYL 195


>gi|318041282|ref|ZP_07973238.1| Holliday junction DNA helicase RuvA [Synechococcus sp. CB0101]
          Length = 220

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 53/215 (24%), Positives = 98/215 (45%), Gaps = 9/215 (4%)

Query: 1   MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG ++G +   ++      +L+   GV Y ++ P R    LG+ G   +L +   +R+D
Sbjct: 1   MIGWLQGQLADRWQQASRCGLLLVCGGVGYEVHLPRRQWERLGETGTELSLHIHQVIRED 60

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF S  +R  F  L +V GVG ++A+G+L +++  ELV +I+  + +++ Q PG+
Sbjct: 61  AWTLYGFASRAERDLFRELVAVSGVGPQMALGLLGQLSCEELVRAIVQADLRLLTQAPGV 120

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVN----KEQAHICSMPSFAINAISALVNLGY 172
             + A R+  EL+ +       V       +       +      +        L  LGY
Sbjct: 121 GKRTAERLAVELRTRLQERYGSVANPEDTADLALPASGSAEALPSAVRDEVNLTLTALGY 180

Query: 173 GQDQATTAVVSVLKKEKN-IADDSQIIRLALRAIS 206
              +   A+ +V   E++        +R  LR +S
Sbjct: 181 EALEINRALRAVATTEEDLGQGADAWLRECLRWLS 215


>gi|148381022|ref|YP_001255563.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A str.
           ATCC 3502]
 gi|153931785|ref|YP_001385393.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A str.
           ATCC 19397]
 gi|153936604|ref|YP_001388800.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A str.
           Hall]
 gi|166230541|sp|A7FY20|RUVA_CLOB1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230542|sp|A5I6F2|RUVA_CLOBH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|148290506|emb|CAL84634.1| holliday junction DNA helicase [Clostridium botulinum A str. ATCC
           3502]
 gi|152927829|gb|ABS33329.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A str.
           ATCC 19397]
 gi|152932518|gb|ABS38017.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A str.
           Hall]
          Length = 197

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 105/205 (51%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG    +Y+DY++I+   + Y IY    T++ L  IG+   L+ E  +R+D I +
Sbjct: 1   MYEYIKGKYIDMYKDYIVIENNNIGYKIYTSGSTMAKLPSIGENIMLYTEQIVREDFIGV 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +   F LL ++ GVGA+ A+ +LS    + L  +I + + K I + PGI  K 
Sbjct: 61  YGFLTKDELSMFKLLLTINGVGAKAALSLLSISNVSTLKYAIKMGDEKTITRAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K           +   +++  +  +     + A++ALV LGY + +A   
Sbjct: 121 AQRIILELKDKIE------IDILEEDDEQIINKVADDKKVLEAVAALVTLGYSEKEANKV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + S  K         QII+ AL+ +
Sbjct: 175 INSCDKNN----SLEQIIKEALKYL 195


>gi|168181761|ref|ZP_02616425.1| Holliday junction DNA helicase RuvA [Clostridium botulinum Bf]
 gi|237796527|ref|YP_002864079.1| Holliday junction DNA helicase RuvA [Clostridium botulinum Ba4 str.
           657]
 gi|259495636|sp|C3KTD3|RUVA_CLOB6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|182675197|gb|EDT87158.1| Holliday junction DNA helicase RuvA [Clostridium botulinum Bf]
 gi|229263209|gb|ACQ54242.1| Holliday junction DNA helicase RuvA [Clostridium botulinum Ba4 str.
           657]
          Length = 197

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 105/205 (51%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG    +Y+DY++I+   + Y IY    T++ L  IG+   L+ E  +R+D I +
Sbjct: 1   MYEYIKGKYIDMYKDYIVIENNNIGYKIYTSGSTMAKLPSIGENIMLYTEQIVREDFIGV 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +   F LL ++ GVGA+ A+ +LS    + L  +I + + K I + PGI  K 
Sbjct: 61  YGFLTKDELSMFKLLLTINGVGAKAALSLLSISNVSTLKYAIKMGDEKTITRAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K           +   +++  +  +     + A++AL+ LGY + +A   
Sbjct: 121 AQRIILELKDKIE------IDILEEDDEQTINKVTDDKKVLEAVAALITLGYSEKEANKV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + S  K         QII+ AL+ +
Sbjct: 175 INSCDKNN----SLEQIIKEALKYL 195


>gi|319406256|emb|CBI79893.1| holliday junction DNA helicase RuvA [Bartonella sp. AR 15-3]
          Length = 214

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 81/207 (39%), Positives = 135/207 (65%), Gaps = 2/207 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG +E +++D++++DVQGV YII+ P R  S L  IG+  +LF+ETH+R++ IRL
Sbjct: 1   MIGKLKGILEHIFDDHIILDVQGVGYIIFIPNRLHSSLPAIGESLSLFIETHVREEAIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++WF LLQ+V GVGA+VA+ +L  ++ +EL ++I L ++ +I++ PG+  K+
Sbjct: 61  FGFATKSEQEWFCLLQNVPGVGAKVALAILGSLSVSELSQAITLNDTAMISRAPGVGKKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           + RI++ELK K + LS    ++ +  +              +A+ AL+ LG+  D+ATTA
Sbjct: 121 SERIVSELKSKTL-LSKEDNKNPALSSSLNFSSEEKHQPTHDALLALIKLGFDHDKATTA 179

Query: 181 VVSVLKKEKNIADDSQII-RLALRAIS 206
           + S L   K     S ++ R +LR +S
Sbjct: 180 LASALSALKGEMISSALLVRHSLRLLS 206


>gi|295094803|emb|CBK83894.1| Holliday junction DNA helicase subunit RuvA [Coprococcus sp.
           ART55/1]
          Length = 200

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 104/205 (50%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +E   ++Y++I+  G+ Y +    + +  L  +     +    ++R+D+I L
Sbjct: 1   MISYIRGALEIKGDNYIVIECGGIGYQLMVSGKFMEKLPPVHSEIKVSTYMYIREDEICL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +   F +L  V GVG +VAM +LS +T  EL  ++I ++ K I++  GI  K 
Sbjct: 61  FGFENADELNVFKILLGVSGVGPKVAMSLLSTLTVNELRLAVISEDVKAISKANGIGAKG 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ ELK K     S+     +  N   A   +      N ISAL  LGY   +A  A
Sbjct: 121 ASRIILELKDKL----SMEDMIDAAYNDSVAVQNAAGDVRTNVISALTALGYSGVEAGRA 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V        D+ Q+++ ALR +
Sbjct: 177 VSRV--DGSADMDEEQLLKAALRFM 199


>gi|189502747|ref|YP_001958464.1| hypothetical protein Aasi_1446 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|229470527|sp|B3EU33|RUVA_AMOA5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189498188|gb|ACE06735.1| hypothetical protein Aasi_1446 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 194

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 103/203 (50%), Gaps = 10/203 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G+I       +++DV G+ Y +   ++T   L  I   C +F   H+ QD   L
Sbjct: 1   MIAYIQGSITYKSPTQLIVDVGGIGYELQISLQTYDSLKDIAASCKIFTYLHITQDAHTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++Q F+ L SV G+G RVA+ +LS +T   L ++I+  ++  +  + GI  K 
Sbjct: 61  YGFSTIEEKQCFLQLLSVNGIGPRVAITILSALTPEALQQAIMTHDTITLQAVKGIGQKA 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL+GK   + +++    S             +    A++AL  LG  +  A   
Sbjct: 121 AQRIILELQGKVGKVGNMLSLQPSG----------QEAIYQEALAALSKLGIHKSTAEKT 170

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V ++LK+ +       +I+LAL+
Sbjct: 171 VAAILKEHQGEITVESLIKLALK 193


>gi|160892584|ref|ZP_02073374.1| hypothetical protein CLOL250_00113 [Clostridium sp. L2-50]
 gi|156865625|gb|EDO59056.1| hypothetical protein CLOL250_00113 [Clostridium sp. L2-50]
          Length = 200

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 107/205 (52%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G +    E+Y++ID  G+ Y I+   + L  +   G    ++   ++R+D++ L
Sbjct: 1   MIAYIAGALVSAGENYIVIDNHGMGYRIFVSGKFLERIPAYGTQIKVYTHMYIREDELTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +   F +L  + GVG +VAM +L+ +T  EL  ++I +++K I++  G+  K 
Sbjct: 61  YGFHSEEELSVFRILIGISGVGPKVAMAILTALTIQELQLAVISEDAKTISKANGVGTKG 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ ELK K      +     +   +  A      + A +AI ALVNLGY   +A  A
Sbjct: 121 ASRIILELKDKLKMEDMMD----AAYEQSIAQNTQDVNAARDAILALVNLGYSNSEAALA 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +   +    D   I++ AL+ +
Sbjct: 177 VKKI--GDIGQMDTEAILKAALKKL 199


>gi|268608399|ref|ZP_06142126.1| Holliday junction DNA helicase RuvA [Ruminococcus flavefaciens
           FD-1]
          Length = 206

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 91/205 (44%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +      + +I+  GV Y       T++ LG++G    L+   ++R+D + L
Sbjct: 1   MIYSLKGKLTVKELGFAVIECGGVGYGCKTSYNTIASLGEVGSEAMLYTHLYVREDAVEL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +   F LL SV GVG + A+ +LS +T  +    +   +SK   +  GI  K 
Sbjct: 61  FGFATQQELSCFRLLISVSGVGPKAAISILSDVTPEKFAFLVASGDSKSFTRTKGIGAKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K  S S              +      S    A+ AL+ LGY Q +    
Sbjct: 121 AQRIVLELKDKISSESISGSVSGDAAAFAPSSAAPSDSV-SEALEALMVLGYTQGETAP- 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +L K         +I+  LR +
Sbjct: 179 ---ILGKLDPSMSTQDLIKETLRLL 200


>gi|114566956|ref|YP_754110.1| Holliday junction resolvasome DNA-binding subunit [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|122318040|sp|Q0AX15|RUVA_SYNWW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|114337891|gb|ABI68739.1| Holliday junction DNA helicase subunit RuvA [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 199

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 52/204 (25%), Positives = 94/204 (46%), Gaps = 12/204 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +     D ++IDV GV Y +    R    L + G+   +     + +++ +L
Sbjct: 1   MIAFLKGAVFERRPDSIIIDVNGVGYEVNIHSRLFPRLPQRGEPILIHTFLQVLENEFKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL   + + F  L +V G+G++ A+ VLS +       +I  Q+ K + +IPG+  K 
Sbjct: 61  FGFLDQDELRLFKTLLTVSGIGSKGALAVLSTMEPLVFYRAIASQDEKTLVRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K   L  V  +                      + AL  LGY + +   A
Sbjct: 121 AQRMIFELQDKVPELKLVEVE------------KEQRPLLDELMEALEILGYSRSEVLPA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           ++ + + ++      + I+L L+A
Sbjct: 169 IMDLNRNKQLGNIVEENIKLVLKA 192


>gi|187778348|ref|ZP_02994821.1| hypothetical protein CLOSPO_01940 [Clostridium sporogenes ATCC
           15579]
 gi|187771973|gb|EDU35775.1| hypothetical protein CLOSPO_01940 [Clostridium sporogenes ATCC
           15579]
          Length = 197

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 104/205 (50%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG    +Y+DY++I+   + Y IY    T++ L  IG+   L+ E  +R+D I +
Sbjct: 1   MYEYIKGKYIDMYKDYIVIENNNIGYKIYTSGSTMAKLPSIGENIMLYTEQIVREDFIGI 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +   F LL ++ GVGA+ ++ +LS    + L  +I + + K I + PGI  K 
Sbjct: 61  YGFLTKDELSMFKLLLTINGVGAKASLSLLSISNVSTLKYAIKMGDEKTITRAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K   +  V   D   +NK            + AI+ALV LGY + +A   
Sbjct: 121 AQRIILELKDKI-EIDIVEDDDEEIINKITDDKK-----VLEAIAALVTLGYSEKEANKV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +    K         QII+ AL+ +
Sbjct: 175 INQCDKDN----SLEQIIKEALKYL 195


>gi|29347388|ref|NP_810891.1| Holliday junction DNA helicase RuvA [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253570551|ref|ZP_04847959.1| Holliday junction DNA helicase ruvA [Bacteroides sp. 1_1_6]
 gi|44888484|sp|Q8A6A7|RUVA_BACTN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|29339288|gb|AAO77085.1| Holliday junction DNA helicase ruvA [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251839500|gb|EES67583.1| Holliday junction DNA helicase ruvA [Bacteroides sp. 1_1_6]
          Length = 201

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 103/205 (50%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  L     +ID  GV Y     + T S + +    C L++   +R+D   L
Sbjct: 1   MIEYVRGELAELSPATAVIDCNGVGYAANISLNTYSAI-QGKKNCKLYIYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F+LL SV G+G   A  +LS ++  ELV  I  +N+ ++  + GI +K 
Sbjct: 60  YGFADKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANLLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K  ++ + V    +                  A++AL  LG+    +   
Sbjct: 120 AQRVIVDLKDKIKTMGATVAGGSASAGMLLQSASVE--VQEEAVAALTMLGFAAAPSQKV 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+++LK+E + A   ++I+LAL+ +
Sbjct: 178 VLAILKEEPD-APVEKVIKLALKRL 201


>gi|260426467|ref|ZP_05780446.1| holliday junction DNA helicase RuvA [Citreicella sp. SE45]
 gi|260420959|gb|EEX14210.1| holliday junction DNA helicase RuvA [Citreicella sp. SE45]
          Length = 221

 Score =  152 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 71/219 (32%), Positives = 115/219 (52%), Gaps = 14/219 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G IE   ED+VLIDV+GV YI+YC  R L+ L + G+   L+ +  +R+D ++L
Sbjct: 1   MIGRIAGRIEYKGEDHVLIDVRGVGYIVYCSDRVLASLPRPGEAAALYTDLLVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + ++++WF LL +VQGVGA+ ++ +L  +    +  +I L ++  I    GI  K 
Sbjct: 61  YGFPTLVEKEWFRLLMTVQGVGAKASLAILGTLGPDGVSRAIALGDANAIKAARGIGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS-------------MPSFAINAISAL 167
             R++ ELK KA  + ++    ++    E                          A+SAL
Sbjct: 121 GLRVVNELKDKAPMVMAMGAGTIASAGPEVIDDAPIPSAPAQAQAAPSSAPAQSEALSAL 180

Query: 168 VNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
            NLGY   +A  AV     +    A  +++IR ALR ++
Sbjct: 181 SNLGYAPGEAAAAVAQAAGEAP-TATTAELIRAALRLLA 218


>gi|298385152|ref|ZP_06994711.1| holliday junction DNA helicase RuvA [Bacteroides sp. 1_1_14]
 gi|298262296|gb|EFI05161.1| holliday junction DNA helicase RuvA [Bacteroides sp. 1_1_14]
          Length = 201

 Score =  152 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 103/205 (50%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  L     +ID  GV Y     + T S + +    C L++   +R+D   L
Sbjct: 1   MIEYVRGELAELSPATAVIDCNGVGYAANISLNTYSAI-QGKKNCKLYIYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F+LL SV G+G   A  +LS ++  ELV  I  +N+ ++  + GI +K 
Sbjct: 60  YGFADKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANLLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K  ++ + V    +                  A++AL  LG+    +   
Sbjct: 120 AQRVIVDLKDKIKTMGATVAGGSASAGMLLQSASVE--VQEEAVAALTMLGFAAAPSQKM 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+++LK+E + A   ++I+LAL+ +
Sbjct: 178 VLAILKEEPD-APVEKVIKLALKRL 201


>gi|241766520|ref|ZP_04764384.1| Holliday junction DNA helicase RuvA [Acidovorax delafieldii 2AN]
 gi|241363253|gb|EER58812.1| Holliday junction DNA helicase RuvA [Acidovorax delafieldii 2AN]
          Length = 190

 Score =  152 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 96/206 (46%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +       VL+D  GV Y +  P+ T   L  +G+  +L  +  +R+D   L
Sbjct: 1   MIGKLTGTLLEKNPPEVLLDCHGVGYEVNVPMSTFYNLPAVGERVSLLTQFIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +RQ F  L  + GVG R A+ +LS +   +L ++I LQ +  + ++PGI  K 
Sbjct: 61  YGFGTATERQAFRELIKISGVGPRTALSILSGMGVGDLAQAITLQEAGRLVKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R              +++       +   H         + + ALV LGY   +A  A
Sbjct: 121 AER-------------LLLELKGKLGAEMGTHAQVTSDAQADILQALVALGYNDKEAAAA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + ++          S  I+LAL+A++
Sbjct: 168 LKALPADVG----VSDGIKLALKALA 189


>gi|227496221|ref|ZP_03926520.1| crossover junction endodeoxyribonuclease [Actinomyces urogenitalis
           DSM 15434]
 gi|226834252|gb|EEH66635.1| crossover junction endodeoxyribonuclease [Actinomyces urogenitalis
           DSM 15434]
          Length = 209

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 54/208 (25%), Positives = 103/208 (49%), Gaps = 8/208 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +     +I+V GV         TL+ L ++G+  T+  E  +R+D + L
Sbjct: 1   MIASLRGTVLDISLTGAVIEVGGVGMAFQATPTTLAGL-RVGEEGTVHTELVVREDALTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +RQ F +L   +GVGA++A+ +L+  T   L  +I  Q+   + ++PG+  K 
Sbjct: 60  FGFADADERQCFRVLLGAKGVGAKLALAILAVHTPDALRRAIASQDVAALKRVPGLGPKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ++  K   L+           + QA   +      + ++ALV LG+ +  A  A
Sbjct: 120 AQRVIIDVGDKLGPLTGQDL----AAERPQAPAETGEEANPDVVAALVQLGWNEATARQA 175

Query: 181 VVSV---LKKEKNIADDSQIIRLALRAI 205
           V +V    +++       +++R +LR +
Sbjct: 176 VGAVESGAQEQGEALSVPELLRASLRWL 203


>gi|160942099|ref|ZP_02089414.1| hypothetical protein CLOBOL_06987 [Clostridium bolteae ATCC
           BAA-613]
 gi|158434990|gb|EDP12757.1| hypothetical protein CLOBOL_06987 [Clostridium bolteae ATCC
           BAA-613]
          Length = 209

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 59/209 (28%), Positives = 105/209 (50%), Gaps = 5/209 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +  + ED ++++   V   I+ P+  L  L  +G   T++    +R+D + L
Sbjct: 1   MISYVKGPLMAIEEDVIVVEAGHVGLAIHVPVSLLPELPGMGKEVTVYTYFQVREDAMTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL   DR  F  L  V G+G + A+G+LS +   +L  +I+ ++ K +A+ PGI  K 
Sbjct: 61  YGFLHSQDRDMFRQLLGVNGIGPKGALGILSVLRPDDLRLAIVSEDVKALAKAPGIGNKT 120

Query: 121 ASRIMTELKGKAIS---LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           A R++ +LK K      L ++            A +  +   A  A+ ALV LGY   +A
Sbjct: 121 AQRLILDLKDKISMDDVLGNMAGGAGMGAADTGASVAGLVEAAKEAVQALVALGYTNTEA 180

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           + AV  V  +  +      +++ +L+ +S
Sbjct: 181 SRAVKQV--EVTDGMTSEDVLKASLKHLS 207


>gi|225023395|ref|ZP_03712587.1| hypothetical protein EIKCOROL_00253 [Eikenella corrodens ATCC
           23834]
 gi|224943873|gb|EEG25082.1| hypothetical protein EIKCOROL_00253 [Eikenella corrodens ATCC
           23834]
          Length = 193

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 14/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K+ G +       V+IDV GV Y     ++T   L  +G+  +L+ +  +R+D   L
Sbjct: 1   MISKLTGKLIEAIPPQVVIDVNGVAYEADVSMQTFYTLPPVGETVSLYTQLIVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L  V G+GA+ A+G+LS + A EL  +I  ++ K ++  PGI  K 
Sbjct: 61  FGFGSHSERNTFRQLIKVSGIGAKTALGILSAMNADELAAAIAAEDIKRLSSAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK  + + V  Q  +               + + +S L+ LGY + +A  A
Sbjct: 121 AERMVLELRGKLTTFNGVQTQLAAQAG----------DSSEDIVSTLLALGYNEKEARAA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +        +  + +RLAL+ +
Sbjct: 171 TKGI----PADTEVGEGVRLALKNL 191


>gi|308070380|ref|YP_003871985.1| Holliday junction DNA helicase ruvA [Paenibacillus polymyxa E681]
 gi|305859659|gb|ADM71447.1| Holliday junction DNA helicase ruvA [Paenibacillus polymyxa E681]
          Length = 204

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G++  L  +YV++DVQGV Y ++CP        K      +++  H+R+D I L
Sbjct: 1   MIDFLRGSVAHLENEYVVLDVQGVGYRVFCPNP--YAFAKTEGPVVIYIHHHVREDAILL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  ++Q F  L  V G+G RVA+G+L   T   +V +I  +N   + ++PGI  K 
Sbjct: 59  FGFATRDEQQLFRKLIDVSGIGPRVALGILGGGTPAHVVTAIYQENITFLTKLPGIGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K   + S+     + +  E        S+   A  AL  LGY   +    
Sbjct: 119 AQRMILDLKDKLDGIGSL--GMATGLFAEPVVEEGEGSYWGEAREALKALGYTDAELDKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              + K  K       +++ AL+ +
Sbjct: 177 WSRMKKDAKPDESADILMKRALQLL 201


>gi|226311452|ref|YP_002771346.1| Holliday junction ATP-dependent DNA helicase [Brevibacillus brevis
           NBRC 100599]
 gi|254766947|sp|C0ZAN3|RUVA_BREBN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226094400|dbj|BAH42842.1| Holliday junction ATP-dependent DNA helicase [Brevibacillus brevis
           NBRC 100599]
          Length = 205

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  L  +Y++I+  G+ Y ++CP      +   G+   LF   H+R+D I L
Sbjct: 1   MIDFVEGTLSYLDSEYIVIETGGIGYRLFCP-NPYQFVRYEGNKTKLFTHHHVREDAILL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+G +  + +L+  T  +LV ++  +N   + + PGI  K 
Sbjct: 60  YGFATRDERDLFRKLLDVSGIGPKGGLAILAAATPEQLVMAVQQENVTYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K +  +      ++  +          S    A+ AL  LGY   +    
Sbjct: 120 AQRIILDLKDKLVGYTPSAILTVAAGDLTAGEQAV--SALNEALDALTALGYSDGELQKI 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             ++ +K K      ++I+  L  +
Sbjct: 178 RNTLSEKSKEGDGVEKLIKQGLALL 202


>gi|212638555|ref|YP_002315075.1| Holliday junction DNA helicase RuvA [Anoxybacillus flavithermus
           WK1]
 gi|226725432|sp|B7GFM6|RUVA_ANOFW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|212560035|gb|ACJ33090.1| Holliday junction resolvasome, DNA-binding subunit [Anoxybacillus
           flavithermus WK1]
          Length = 197

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 96/205 (46%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G ++ +  +YV+I+  GV Y I+ P    S          ++   ++R+D + L
Sbjct: 1   MIEFIRGYVDYVCPEYVVIENNGVGYQIFTP-NPFSFQMNKQQQIVVYTYQYVREDVLAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+G + A+ +L+     +LVE+I  +N + + + PG+  K 
Sbjct: 60  YGFHTRQERMLFAKLLQVSGIGPKGALAILAAGQLEQLVEAIEAENDQFLCKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK  ++      ++              +    AI AL  LGY   +    
Sbjct: 120 ARQMILDLKGKLQAIVPDAFPNLFT------EPLEETNALSEAIEALKALGYADKEIQKV 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  + ++          I+LAL+ +
Sbjct: 174 VPMLRQE---RLSTEGYIKLALQKL 195


>gi|121595991|ref|YP_987887.1| Holliday junction DNA helicase RuvA [Acidovorax sp. JS42]
 gi|166229625|sp|A1WC36|RUVA_ACISJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|120608071|gb|ABM43811.1| Holliday junction DNA helicase RuvA [Acidovorax sp. JS42]
          Length = 190

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 95/206 (46%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +       VL+D  GV Y +   + T   L  +G+  +L  +  +R+D   L
Sbjct: 1   MIGKLTGTLLEKNPPEVLVDCHGVGYEVQVSMSTFYNLPAVGERVSLLTQFIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +RQ F  L  + GVG R A+ +LS +   +L +++ LQ +  + ++PGI  K 
Sbjct: 61  YGFGTAQERQAFRELIKISGVGPRTALSILSGMGVADLAQAVSLQEAGRLVKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R              +++              +      + + AL+ LGY   +A  A
Sbjct: 121 AER-------------LLLELKGKLGADVGVRAHAANDNQADILQALLALGYNDKEAAAA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + ++          S+ I+LAL+++S
Sbjct: 168 LKALPADVG----VSEGIKLALKSLS 189


>gi|282850099|ref|ZP_06259481.1| Holliday junction DNA helicase RuvA [Veillonella parvula ATCC
           17745]
 gi|282580288|gb|EFB85689.1| Holliday junction DNA helicase RuvA [Veillonella parvula ATCC
           17745]
          Length = 202

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 111/205 (54%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +  L+++   +DV GV Y +Y P  T   L + G   TLF   ++R+D ++L
Sbjct: 1   MIGYVRGIVTHLFKESCYVDVHGVGYRVYVPTTTRQQLTE-GHEATLFTYLNVREDAMQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ + + F+LL SV G+G +V +G+LS +T      +II    + + ++PGI  K 
Sbjct: 60  YGFWTEEEYELFILLISVSGIGPKVGLGILSGMTPEAFKLAIINGQVQQLTKLPGIGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K   ++ +  +  + +        +    A  AI ALV+LGY +      
Sbjct: 120 AERLVLELKDKIAKMTHISSESSATIQPIGV---AANGVAGEAIEALVSLGYLERDVADI 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V S+   +    D S++I+++L  +
Sbjct: 177 VESL---DDGKRDVSELIKVSLIEL 198


>gi|313895598|ref|ZP_07829154.1| Holliday junction DNA helicase RuvA [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312975724|gb|EFR41183.1| Holliday junction DNA helicase RuvA [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 198

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 103/205 (50%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +     D+ L+DV  V Y ++   +T + + + G+   L++ TH+R+D I L
Sbjct: 1   MIGFLRGTVVHSAVDHCLLDVHDVGYRVFVSRKTCAHIAQ-GEEALLYIHTHVREDAILL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +   F  L  + G+G + A  +LS +T  +    I  +N K I ++PGI  K 
Sbjct: 60  YGFFSQEEYDLFQHLIGISGIGPKGAQSILSEVTPHDFYRLIHKKNVKGITKLPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K  + +     D S V           S    A  AL++LG+ Q++    
Sbjct: 120 AERLVLELKDKFGAYADTGVDDTSAV-----VSDVSDSMLAEATEALMSLGFQQNE---- 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +V + + +     +++R AL  +
Sbjct: 171 IQTVFQGKTDYQSTEELVRYALSVL 195


>gi|322437324|ref|YP_004219536.1| Holliday junction DNA helicase RuvA [Acidobacterium sp. MP5ACTX9]
 gi|321165051|gb|ADW70756.1| Holliday junction DNA helicase RuvA [Acidobacterium sp. MP5ACTX9]
          Length = 196

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 99/205 (48%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     +  +++  GV Y +   + T S L + G    LF+ T + ++Q+ L
Sbjct: 1   MIAHLRGLLLFKSTNQAVVECGGVGYDVAISVATYSALPREGAEAKLFIFTKVAEEQLAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    ++  F  L ++ G+G ++A+ VLS I A  LV +I   +   + +IPGI  K 
Sbjct: 61  FGFSDRQEKSLFEKLLTITGIGPKLAITVLSGIAADRLVTAIRGGDHDTLVKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K   +++             A + S      + +SALVNLGY + QA  A
Sbjct: 121 AERVVLELKDKLDDMATAP----------VAAVQSHGPAGDDVLSALVNLGYARPQAQKA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +   L+          + R A+  I
Sbjct: 171 IEMALRDPGAAGSFEVLFRAAMNHI 195


>gi|260887321|ref|ZP_05898584.1| holliday junction DNA helicase RuvA [Selenomonas sputigena ATCC
           35185]
 gi|330838926|ref|YP_004413506.1| Holliday junction DNA helicase RuvA [Selenomonas sputigena ATCC
           35185]
 gi|260862957|gb|EEX77457.1| holliday junction DNA helicase RuvA [Selenomonas sputigena ATCC
           35185]
 gi|329746690|gb|AEC00047.1| Holliday junction DNA helicase RuvA [Selenomonas sputigena ATCC
           35185]
          Length = 201

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 107/206 (51%), Gaps = 8/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +  L  D+  +DV GV Y ++    T   L  +G+  TLF    +R+D + L
Sbjct: 1   MIGFLRGKVARLSLDFCFLDVAGVGYRVFISGATHGRL-HMGEEVTLFTHLAVREDAMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ + + F +L SV G+G + A+G+LS IT   L  ++  + + ++ + PGI  K 
Sbjct: 60  YGFFSEEEYELFQMLISVTGIGPKAALGILSNITPENLCLAVRNKKADILTKAPGIGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K     +  +   + V +         +    A +AL++LGY Q +    
Sbjct: 120 AERIILELKDKMKGFMTEHE---AIVEEGLLEEPVEDTMLAEAGAALLSLGYTQAE---- 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
              +L++ K+  D   +IR AL+  +
Sbjct: 173 FTPILRRAKDCKDAEALIRFALKEFA 198


>gi|255691218|ref|ZP_05414893.1| holliday junction DNA helicase RuvA [Bacteroides finegoldii DSM
           17565]
 gi|260623130|gb|EEX46001.1| holliday junction DNA helicase RuvA [Bacteroides finegoldii DSM
           17565]
          Length = 201

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 102/205 (49%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  L     +ID  GV Y     + T S + +    C L++   +R+D   L
Sbjct: 1   MIEYIRGELAELSPATAVIDCNGVGYAANISLNTYSAI-QGKKTCKLYIYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F+LL SV G+G   A  +LS ++  ELV  I  +N+ ++  + GI +K 
Sbjct: 60  YGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANLLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K  ++ +      +          +       A++AL  LG+    +   
Sbjct: 120 AQRVIVDLKDKIKTMGASAAGGSAVGGM--LLQAANAEVQEEAVAALTMLGFAAAPSQKV 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+++LK+E   A   ++I+LAL+ +
Sbjct: 178 VLAILKEEPE-APVEKVIKLALKRL 201


>gi|294085860|ref|YP_003552620.1| Holliday junction DNA helicase RuvA [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292665435|gb|ADE40536.1| Holliday junction DNA helicase RuvA [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 207

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 110/206 (53%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +    + + +IDVQGV Y++    RT   L       T+  E  +R+D + L
Sbjct: 1   MIAQLRGILSHTADTHAIIDVQGVGYLVNISSRTQGQLAAQDGAVTVLTEMIVREDSMTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F LL +VQGVGA+ AM +LS ++  +L  +I+  +  ++A+  G+  KI
Sbjct: 61  YGFHDASERDAFRLLITVQGVGAKAAMAILSVLSPADLSSAIMAGDKAMVARADGVGPKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQ-DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ EL  K     S+     ++             S   +A+SAL+NLGYG+ +A  
Sbjct: 121 AQRVVNELAEKIGRFPSLGDGLTINISGVTGGEDLPGASAMGDALSALINLGYGRSEAHA 180

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
           A++ V ++  +  D S +I  ALR I
Sbjct: 181 ALLRV-QQAGDADDLSGLIAAALREI 205


>gi|110597586|ref|ZP_01385871.1| Holliday junction DNA helicase RuvA [Chlorobium ferrooxidans DSM
           13031]
 gi|110340706|gb|EAT59183.1| Holliday junction DNA helicase RuvA [Chlorobium ferrooxidans DSM
           13031]
          Length = 200

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 55/202 (27%), Positives = 97/202 (48%), Gaps = 8/202 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G +  L  +  +++V G+ Y       T   L + G    L+    +R+D  +L
Sbjct: 1   MFAYFRGRLVSLLPEEAVVEVSGIAYRFLISASTSRQLPETGSEVLLYSHLSVREDAHQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+++ +RQ F LL    GVG ++A+ VLS +   E+ ++I+    + +  I G+  K 
Sbjct: 61  YGFITEAERQMFRLLILTSGVGPKLALAVLSGLQVAEVYDAILANTPERLYGITGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ EL+ K + LS                         +AI+ALV LG+ +     A
Sbjct: 121 AARIILELRDKILKLSPAGTIA-------APSAQLSSRMRDDAINALVTLGFSRVTVQKA 173

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           V S+L+K  +     ++I+ AL
Sbjct: 174 VDSILEKN-SALSVEEVIKSAL 194


>gi|317969751|ref|ZP_07971141.1| Holliday junction DNA helicase RuvA [Synechococcus sp. CB0205]
          Length = 225

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 54/213 (25%), Positives = 96/213 (45%), Gaps = 7/213 (3%)

Query: 1   MIGKIKGNIEGLY--EDY--VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG ++G +   +   +   VL+   GV Y +  P R    LG  G    L V   +R+D
Sbjct: 9   MIGWLQGQLADRWHLNNRFGVLLVCSGVGYEVQMPRRHWDQLGGNGTEAALHVHQVIRED 68

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF +  +R  F  L +V GVG ++A+G+L +++  ELV +I+  + + + Q PG+
Sbjct: 69  SWTLYGFCARHERDLFRELVAVSGVGPQMALGLLGQLSCEELVRAIVQADLRQLCQAPGV 128

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF--AINAISALVNLGYGQ 174
             + A R+  EL+ +         Q     + + +     P+          L  LGY  
Sbjct: 129 GKRTAERLSVELRTRLQQRYGESLQLSQSDDLQVSDSGEGPAAGVREEVQLTLSALGYEA 188

Query: 175 DQATTAVVSVLKKEKN-IADDSQIIRLALRAIS 206
            +   A+ ++  +      D    +R +LR +S
Sbjct: 189 LEINRALRAISPQGPELGEDGDAWLRESLRYLS 221


>gi|323692211|ref|ZP_08106454.1| Holliday junction DNA helicase RuvA [Clostridium symbiosum
           WAL-14673]
 gi|323503785|gb|EGB19604.1| Holliday junction DNA helicase RuvA [Clostridium symbiosum
           WAL-14673]
          Length = 203

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 105/206 (50%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +     D ++++   V   IY P+  L  L  +G+   ++    +R+D + L
Sbjct: 1   MISYVKGALAEKSGDRIVVEAGPVGLGIYVPLSVLEVLPPLGEEVKIYTYLQVREDDLSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  D   F  L  V G+G + A+G+LS ++  +L  +I+  ++K I++ PG+  K 
Sbjct: 61  YGFLNRQDLDMFRRLIGVNGIGPKGALGILSALSPDDLRLAILTGDAKAISKAPGVGAKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K  +   +         +E+  +  M      A +ALV LGY   +A+ A
Sbjct: 121 AQRIILDLKEKVSAEEMLASV---ADTEERTSVPLMQEAGREAATALVALGYSNLEASKA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V +V  +     D   ++R +L+ ++
Sbjct: 178 VKNV--QITEDMDAEAVLRASLKYLA 201


>gi|167037426|ref|YP_001665004.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167040093|ref|YP_001663078.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter sp. X514]
 gi|256752590|ref|ZP_05493444.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300914176|ref|ZP_07131492.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter sp. X561]
 gi|307724588|ref|YP_003904339.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter sp. X513]
 gi|320115839|ref|YP_004185998.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|229560136|sp|B0K955|RUVA_THEP3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560137|sp|B0K0L7|RUVA_THEPX RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166854333|gb|ABY92742.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter sp. X514]
 gi|166856260|gb|ABY94668.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256748528|gb|EEU61578.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300889111|gb|EFK84257.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter sp. X561]
 gi|307581649|gb|ADN55048.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter sp. X513]
 gi|319928930|gb|ADV79615.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 187

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 96/205 (46%), Gaps = 20/205 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G IE + +DYV+ID  G+   ++ P  TL  L   G+   L+    +R+D  ++
Sbjct: 1   MIEYVRGIIEDIGQDYVVIDFMGIGIKVFVPFSTLKVLPSKGNITKLYTYLQVREDGFQI 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +   F  L SV GVG + A+ +LS ++    V+++   + K +   PGI  K 
Sbjct: 61  FGFKTKEELDLFEKLLSVSGVGPKGALSILSVVSIDNFVKAVNAGDYKALTVAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K                  +       +F+  A+ AL+ LGY + +A  A
Sbjct: 121 AERIILELKDKLPK---------------EIVFEGDNNFSNEALEALLALGYTKSEAIYA 165

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +             ++ AL+ +
Sbjct: 166 LADI-----TCDSVEDAVKQALKKL 185


>gi|294651065|ref|ZP_06728403.1| crossover junction crossover junction ATP-dependent DNA helicase
           RuvA [Acinetobacter haemolyticus ATCC 19194]
 gi|292823044|gb|EFF81909.1| crossover junction crossover junction ATP-dependent DNA helicase
           RuvA [Acinetobacter haemolyticus ATCC 19194]
          Length = 201

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 64/205 (31%), Positives = 103/205 (50%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG I G +  L    VL++V GV Y I  P+ T   L K G   TL+    +R+D  +L
Sbjct: 1   MIGCIIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++  F  L  V GVG ++A+G+LS ++   L+ +I   +   + ++PG+  K 
Sbjct: 60  YGFSDAQEKTIFRTLLKVNGVGPKMALGILSTLSVELLIHTIEHDDINTLIKVPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+M EL+ +  +L+       +    +   +    S    A +AL +LGY   +A  A
Sbjct: 120 AERLMIELRDRFKALAHSTGSTTNAAAAQIQFMT--NSPVAEAEAALQSLGYKPAEAQKA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +V       AD   IIR AL+++
Sbjct: 178 VAAVKADYTESAD---IIRAALKSM 199


>gi|226952125|ref|ZP_03822589.1| Holliday junction helicase, subunit A [Acinetobacter sp. ATCC
           27244]
 gi|226837134|gb|EEH69517.1| Holliday junction helicase, subunit A [Acinetobacter sp. ATCC
           27244]
          Length = 201

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 104/205 (50%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  L    VL++V GV Y I  P+ T   L K G   TL+    +R+D  +L
Sbjct: 1   MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++  F  L  V GVG ++A+G+LS ++   L+ +I   +   + ++PG+  K 
Sbjct: 60  YGFSDAQEKTIFRTLLKVNGVGPKMALGILSTLSVELLIHTIEHDDINTLIKVPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+M EL+ +  +L++      +    +   +    S    A +AL +LGY   +A  A
Sbjct: 120 AERLMIELRDRFKALANSTGGTTNTAAAQIQFMA--NSPVAEAEAALQSLGYKPAEAQKA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +V       AD   IIR AL+++
Sbjct: 178 VAAVKADYTESAD---IIRAALKSM 199


>gi|325917782|ref|ZP_08179966.1| Holliday junction DNA helicase subunit RuvA [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325535998|gb|EGD07810.1| Holliday junction DNA helicase subunit RuvA [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 194

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 60/204 (29%), Positives = 95/204 (46%), Gaps = 13/204 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      +++IDV GV Y +  P+ T   L  +G    LF     ++D + L
Sbjct: 1   MIGRLRGILAYKQPPWLVIDVGGVGYELEAPMSTFYDLPDVGRDVILFTHYAQKEDSVAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + +R+ F  +Q V G+GA++A+ VLS ++  E    I   +   + +IPGI  K 
Sbjct: 61  YGFLREGERRLFRDVQKVTGIGAKIALAVLSGVSVDEFARLITGGDITALTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +A   SS                   P     A  AL  LGY   +A   
Sbjct: 121 AERMVVELRDRAADFSSGAP----------ITGQLGPDAVSEATVALQQLGYKPAEAARM 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
                 +   +A     IR AL+A
Sbjct: 171 AREAGAEGDEVATV---IRKALQA 191


>gi|253566072|ref|ZP_04843526.1| Holliday junction DNA helicase motor protein [Bacteroides sp.
           3_2_5]
 gi|251945176|gb|EES85614.1| Holliday junction DNA helicase motor protein [Bacteroides sp.
           3_2_5]
          Length = 201

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I  L     +ID  G+ Y +   + T S + +    C L++   +R+D   L
Sbjct: 1   MIEYIKGEIAELSPATAVIDCNGLGYAVNISLNTYSAI-QGKSSCKLYIYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F+LL SV G+G   A  +LS ++  ELV  I  +N+ ++  + GI +K 
Sbjct: 60  YGFADKQERELFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K  + +                +         AI+AL  LG+    +  A
Sbjct: 120 AQRVIVDLKDKIKTGAMAATAVGGAAGALLPAM--NAEVQEEAIAALTMLGFAATPSQKA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+++LK+E + A   ++I+LAL+ +
Sbjct: 178 VLAILKEEPD-APVEKVIKLALKRL 201


>gi|167751984|ref|ZP_02424111.1| hypothetical protein ALIPUT_00226 [Alistipes putredinis DSM 17216]
 gi|167660225|gb|EDS04355.1| hypothetical protein ALIPUT_00226 [Alistipes putredinis DSM 17216]
          Length = 194

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 95/205 (46%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G I  L   + ++DV GV Y +   ++T S + +  D   LFV   +R+D   L
Sbjct: 1   MYEYLSGTISELAPTHAVLDVGGVGYFLQISLQTYSEI-EHSDRVKLFVHYVVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R+ F  L SV GVG   A  +LS  +  EL   I  +N+ ++  + G+ +K 
Sbjct: 60  YGFASKAERELFRHLISVSGVGGNTARMILSTYSPRELQGIIATENAVLLKNVKGLGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ EL GK   L                           A++ALV LG+G+  A   
Sbjct: 120 AQKIIVELSGKMAGLGLTGDT---------VTAPVAGGDYEEALAALVMLGFGKAAADKV 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V ++    A    ++R++L+ +
Sbjct: 171 VKIVARENP-GASVEDLVRMSLKRL 194


>gi|253578705|ref|ZP_04855976.1| Holliday junction DNA helicase RuvA [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849648|gb|EES77607.1| Holliday junction DNA helicase RuvA [Ruminococcus sp. 5_1_39BFAA]
          Length = 202

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 60/203 (29%), Positives = 100/203 (49%), Gaps = 3/203 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G    + E  V+++  G+ Y IY     LS + ++G+   +     +R+D ++L
Sbjct: 1   MIAFVHGMAVDMTESSVVVEAGGIGYEIYMTGADLSEI-RMGEDVKVHTYFSVREDAMKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  D Q F LL  V GVG + A+GVL+ ITA EL  +I+  + K +++ PGI  K 
Sbjct: 60  YGFRAKDDLQMFKLLLGVNGVGPKAALGVLAGITADELRFAILSDDVKTLSKAPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK K     +   + +    +       +      A+ ALV LGY    A  A
Sbjct: 120 AQKLILELKDKMKLEDAFELKLVHEQERAAVGAGEVSDGRQEAVEALVALGYSSADALRA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  V     +  D   +++ AL+
Sbjct: 180 VRKVTDVSPD--DVEGLLKAALK 200


>gi|298479676|ref|ZP_06997876.1| holliday junction DNA helicase RuvA [Bacteroides sp. D22]
 gi|298274066|gb|EFI15627.1| holliday junction DNA helicase RuvA [Bacteroides sp. D22]
          Length = 200

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 105/205 (51%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  L     +ID  GV Y     + T S + +    C L++   +R+D   L
Sbjct: 1   MIEYIRGELAELSPATAVIDCNGVGYAANISLNTYSAI-QGKKNCKLYIHEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F+LL SV G+G   A  +LS ++  ELV  I  +N+ ++  + GI +K 
Sbjct: 60  YGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K  ++S      +S     Q    +       A+SAL  LG+    +   
Sbjct: 120 AQRVIVDLKDKIKTMSGSAGGGVSAGLLLQ---PANAEVQEEAVSALTMLGFAAAPSQKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+++LK+E + A   ++I+LAL+ +
Sbjct: 177 VLAILKEEPD-APVEKVIKLALKRL 200


>gi|310829219|ref|YP_003961576.1| Holliday junction DNA helicase RuvA [Eubacterium limosum KIST612]
 gi|308740953|gb|ADO38613.1| Holliday junction DNA helicase RuvA [Eubacterium limosum KIST612]
          Length = 203

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 59/202 (29%), Positives = 107/202 (52%), Gaps = 7/202 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKGN E    DY+++D QG+ Y I     T+S L K+     +++    ++D + L
Sbjct: 1   MFEYIKGNYEEQASDYIVVDHQGMGYRINVSANTMSELPKLHKEVKVYIHPAFKEDDVTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R+ F  + ++ G+G + AMG+LS+ T  EL+  I+ +++K I++ PGI  K 
Sbjct: 61  YGFSSKEEREIFRTIITISGIGPKAAMGLLSQFTRDELIRYIVNEDAKAISRAPGIGQKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ ELK K  + +     +   +     ++    +    A++ L+ LGYG  +A+  
Sbjct: 121 ANRIILELKDKYKNFAFTDSAEPGAIE----NLRETDNLFNEAVNGLLGLGYGYAEASEL 176

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           V  +++          I++ AL
Sbjct: 177 VEKIIQ---PGMSIEDILKNAL 195


>gi|53714974|ref|YP_100966.1| Holliday junction DNA helicase RuvA [Bacteroides fragilis YCH46]
 gi|60682940|ref|YP_213084.1| Holliday junction DNA helicase RuvA [Bacteroides fragilis NCTC
           9343]
 gi|265766821|ref|ZP_06094650.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 2_1_16]
 gi|81314002|sp|Q5L9Q7|RUVA_BACFN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|81381448|sp|Q64PZ9|RUVA_BACFR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|52217839|dbj|BAD50432.1| Holliday junction DNA helicase RuvA [Bacteroides fragilis YCH46]
 gi|60494374|emb|CAH09170.1| putative holliday junction DNA helicase [Bacteroides fragilis NCTC
           9343]
 gi|263253198|gb|EEZ24674.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 2_1_16]
 gi|301164406|emb|CBW23964.1| putative holliday junction DNA helicase [Bacteroides fragilis 638R]
          Length = 201

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I  L     +ID  G+ Y +   + T S + +    C L++   +R+D   L
Sbjct: 1   MIEYIKGEIAELSPATAVIDCNGLGYAVNISLNTYSAI-QGKSSCKLYIYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F+LL SV G+G   A  +LS ++  ELV  I  +N+ ++  + GI +K 
Sbjct: 60  YGFADKQERELFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K  + +                +         AI+AL  LG+    +  A
Sbjct: 120 AQRVIVDLKDKIKTGAMAATAVGGAAGALLPAM--NAEVQEEAIAALTMLGFAAAPSQKA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+++LK+E + A   ++I+LAL+ +
Sbjct: 178 VLAILKEEPD-APVEKVIKLALKRL 201


>gi|260551462|ref|ZP_05825646.1| Holliday junction helicase subunit A [Acinetobacter sp. RUH2624]
 gi|260405456|gb|EEW98949.1| Holliday junction helicase subunit A [Acinetobacter sp. RUH2624]
          Length = 203

 Score =  151 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 67/205 (32%), Positives = 104/205 (50%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  L    VL++V GV Y I  P+ T   L K G   TL+    +R+D  +L
Sbjct: 5   MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 63

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++  F  L  V GVG ++A+G+LS ++   LV +I   +   + ++PG+  K 
Sbjct: 64  YGFSDAQEKTIFRTLLKVNGVGPKMALGILSTLSVELLVHTIEHDDVNTLVKVPGVGKKT 123

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+M EL+ +  +L+    Q  S V        +  S    A +AL +LGY   +A  A
Sbjct: 124 AERLMIELRDRFKTLA----QGTSTVATMPQIQFAANSPVAEAEAALQSLGYKPLEAQKA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +V       AD   IIR AL+++
Sbjct: 180 VAAVKADYTESAD---IIRAALKSM 201


>gi|326390112|ref|ZP_08211673.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325993760|gb|EGD52191.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 187

 Score =  151 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 99/205 (48%), Gaps = 20/205 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G IE + +DYV+ID  G+   ++ P  TL  L   G+   L+   HMR+D  ++
Sbjct: 1   MIEYIRGMIEDIGQDYVVIDFMGIGIKVFVPFSTLKVLPSKGNITKLYTYLHMREDGFQI 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +   F  L SV GVG + A+ +LS ++    V+++ + + K +   PGI  K 
Sbjct: 61  FGFKTKEELDLFEKLLSVSGVGPKGALSILSVVSIDNFVKAVNVGDYKALTIAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K                  +       +F+  A+ AL+ LGY + +A  A
Sbjct: 121 AERIILELKDKLPK---------------EIVFEGDNNFSNEALEALLALGYTKSEAIYA 165

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +           + ++ AL+ +
Sbjct: 166 LADI-----TCDSVEEAVKQALKKL 185


>gi|91203074|emb|CAJ72713.1| strongly similar to DNA helicase RuvA [Candidatus Kuenenia
           stuttgartiensis]
          Length = 196

 Score =  151 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 65/203 (32%), Positives = 112/203 (55%), Gaps = 10/203 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  I+G +       ++++V GV Y+++ PI T   +   G+  T+  +  +R+D I+L
Sbjct: 1   MLDYIRGQVISKSPTKLVLEVAGVGYLLHIPISTFEKIPSRGE-VTIHTQLFLREDGIKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF SD +R  F LL SV GVG  +A+ +LS  TA ++  +I  +++K + +I G+  K 
Sbjct: 60  FGFASDEERGLFQLLLSVNGVGPTMAIAILSGSTANDIKCAIAREDTKALMRIKGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK       + +  +M    +         +FA +AI AL++LGYG+  A  A
Sbjct: 120 AERIVLELKESVKGAKASIDIEMDGRQR---------AFADDAIMALISLGYGRPVAENA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V   +KK  ++ +   ++R AL+
Sbjct: 171 VKEAVKKLNSVDNIEVLVREALK 193


>gi|84501645|ref|ZP_00999817.1| Holliday junction DNA helicase motor protein [Oceanicola batsensis
           HTCC2597]
 gi|84390266|gb|EAQ02825.1| Holliday junction DNA helicase motor protein [Oceanicola batsensis
           HTCC2597]
          Length = 220

 Score =  151 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 74/219 (33%), Positives = 117/219 (53%), Gaps = 14/219 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G I+    D+VLIDV+GV Y+++   RTL+ L   G+   L+ E  +R+D ++L
Sbjct: 1   MIGRLAGRIDMRGPDHVLIDVRGVGYVVFVSDRTLATLPGAGEAAALYTELIVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + ++++WF LL SVQGVGA+ A+ +L  + A  L  +I L +   +    GI  K 
Sbjct: 61  YGFPTLVEKEWFRLLTSVQGVGAKGALAILGALGAEGLGRAIALGDQASVKAAKGIGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM-------------PSFAINAISAL 167
           A RI+ ELK KA ++ ++     +     +  +                 S    A+SAL
Sbjct: 121 AQRIVLELKDKAPAVMAMGGAAPTSAAPAETEVVEPVPAPAATAAPASTASAQAEALSAL 180

Query: 168 VNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
            NLGYG  +A  AV     +    AD + +IR ALR ++
Sbjct: 181 GNLGYGPSEAAAAVAEAAGETP-RADTAALIRSALRRLA 218


>gi|320109383|ref|YP_004184973.1| Holliday junction DNA helicase RuvA [Terriglobus saanensis SP1PR4]
 gi|319927904|gb|ADV84979.1| Holliday junction DNA helicase RuvA [Terriglobus saanensis SP1PR4]
          Length = 198

 Score =  151 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 100/206 (48%), Gaps = 10/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     +  +++  GV Y +   + T S L   G    LF+ T +R+D I L
Sbjct: 1   MIAHLRGRLLAKSPNQAIVECGGVGYDVAISVTTFSALKSEGAEVELFINTQVREDAIAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +++ F  L +V G+G ++ + VLS I A  LV +I   +   + +IPGI  K 
Sbjct: 61  FGFAEMEEKRLFEKLITVSGIGPKLGITVLSGIAAPLLVAAIKGSDHATLQKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K   + S    D                   + +SAL NLGY +  A  A
Sbjct: 121 AERVVVELKDKLEDMISAPSADPGFHAGPAG---------DDVLSALANLGYQKAAAQRA 171

Query: 181 VVSVLKKEKNI-ADDSQIIRLALRAI 205
           + + +++E  +  +  ++ R A+ A+
Sbjct: 172 IQTAIEQEPALRTEFEKLFRAAMGAM 197


>gi|302517991|ref|ZP_07270333.1| Holliday junction DNA helicase RuvA [Streptomyces sp. SPB78]
 gi|318057102|ref|ZP_07975825.1| Holliday junction DNA helicase RuvA [Streptomyces sp. SA3_actG]
 gi|333028331|ref|ZP_08456395.1| putative holliday junction DNA helicase RuvA [Streptomyces sp.
           Tu6071]
 gi|302426886|gb|EFK98701.1| Holliday junction DNA helicase RuvA [Streptomyces sp. SPB78]
 gi|332748183|gb|EGJ78624.1| putative holliday junction DNA helicase RuvA [Streptomyces sp.
           Tu6071]
          Length = 206

 Score =  151 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 55/209 (26%), Positives = 100/209 (47%), Gaps = 9/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L     +++V G+   + C   TLS L +IG+   +     +R+D + L
Sbjct: 1   MIAFVSGPVAALGPTSAVVEVGGIGMAVQCTPHTLSTL-RIGEQARIATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+ ++   L  ++   + K +  +PGI  K 
Sbjct: 60  YGFADDDERQTFELLQTASGVGPRLAQAMLATLSPDALRLAVSTADEKALTAVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK +              +  ++      P +     +ALV LGY   +A  A
Sbjct: 120 AQKLILELKDRLGQ-----PLGTGTLGAQRRAAAGPPPWTEQLHTALVGLGYQPREAEEA 174

Query: 181 VVSVLKKEKNIADDSQ---IIRLALRAIS 206
           V +V  + +      +   ++R AL+ ++
Sbjct: 175 VEAVTPQAEAQEGVPEIGPLLRAALQTLN 203


>gi|78188435|ref|YP_378773.1| Holliday junction DNA helicase RuvA [Chlorobium chlorochromatii
           CaD3]
 gi|90134727|sp|Q3ATE5|RUVA_CHLCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|78170634|gb|ABB27730.1| Holliday junction DNA helicase subunit RuvA [Chlorobium
           chlorochromatii CaD3]
          Length = 204

 Score =  151 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 60/202 (29%), Positives = 99/202 (49%), Gaps = 6/202 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G +     D  +I++QGV Y       T   L   G    LF   ++R+D + L
Sbjct: 1   MYAYFRGTLISFTADEAIIELQGVAYHFLISATTSRQLPNSGSEVQLFAHLYVREDAMLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +RQ F LL    GVG ++A+ VLS +   E+ ++I+    + +  I G+  K 
Sbjct: 61  YGFYSEEERQLFRLLLQASGVGPKLALSVLSGLPVHEVHDAIVSNIPERLYGISGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ EL+ K + LS V+    +      A          +AI+ALV LG+ +  A   
Sbjct: 121 AARIILELRDKILKLSPVLPTATARRPHNAAQ-----QLRDDAITALVTLGFPRAAAQKT 175

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           V S+L +  N     ++++ AL
Sbjct: 176 VTSLLDENSNC-TVEEVVKSAL 196


>gi|258512078|ref|YP_003185512.1| Holliday junction DNA helicase RuvA [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478804|gb|ACV59123.1| Holliday junction DNA helicase RuvA [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 208

 Score =  151 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 109/205 (53%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  L   YV +DV+ V Y ++   RT + L  +GD   L+   H+R+D   L
Sbjct: 1   MIAFLRGRVAFLGPGYVDLDVRDVGYRVHVCDRTQAAL-NLGDTAFLYTHHHVREDGWAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L +V G+G ++A+ V+      E+V +I+ ++++ ++++PGI  K+
Sbjct: 60  YGFETIEERALFERLVAVSGIGPKLALQVIGAAGVGEIVAAILAEDAESLSRLPGIGRKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASR++ EL+ K   L+    +  +  +  Q       S A +A+SALV LGY   +A  A
Sbjct: 120 ASRLVVELREKLDDLAPAALRAPAPASSPQG------SAAEDAVSALVALGYRPREAEEA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +V +           I+ AL  +
Sbjct: 174 VSAVGR---GRQSVEDTIKAALTYL 195


>gi|293609857|ref|ZP_06692159.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828309|gb|EFF86672.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325123084|gb|ADY82607.1| holliday junction helicase subunit A [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 199

 Score =  151 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 67/205 (32%), Positives = 104/205 (50%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  L    VL++V GV Y I  P+ T   L K G   TL+    +R+D  +L
Sbjct: 1   MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++  F  L  V GVG ++A+G+LS ++   LV +I   +   + ++PG+  K 
Sbjct: 60  YGFSDAQEKTIFRTLLKVNGVGPKMALGILSTLSVELLVHTIEHDDINTLVKVPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+M EL+ +  +L+    Q  S V        +  S    A +AL +LGY   +A  A
Sbjct: 120 AERLMIELRDRFKTLA----QGTSTVATMPQIQFAANSPVAEAEAALQSLGYKPLEAQKA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +V       AD   IIR AL+++
Sbjct: 176 VAAVKADYTESAD---IIRAALKSM 197


>gi|329938965|ref|ZP_08288339.1| Holliday junction DNA helicase RuvA [Streptomyces griseoaurantiacus
           M045]
 gi|329301850|gb|EGG45743.1| Holliday junction DNA helicase RuvA [Streptomyces griseoaurantiacus
           M045]
          Length = 201

 Score =  151 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 55/209 (26%), Positives = 97/209 (46%), Gaps = 14/209 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L  D  +++V GV   + C   TLS L ++G    L     +R+D + L
Sbjct: 1   MIAFVSGTVAALAPDTAVLEVGGVGMAVQCTPNTLSTL-RLGRPAKLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + +RQ F LLQ+  GVG R+A  +L+  +   L  ++   + K +  +PGI  K 
Sbjct: 60  YGFADEDERQVFELLQTASGVGPRLAQAMLAVHSPDALRRAVSTGDEKALTAVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK +              +        +   +     +AL+ LGY   +A  A
Sbjct: 120 AQKLLLELKDRLGE----------PLGAPAVGAPAGQGWRDQLHAALIGLGYATREADEA 169

Query: 181 VVSVLKKEKNIADDSQ---IIRLALRAIS 206
           V +V  + +      Q   ++R AL+ ++
Sbjct: 170 VAAVTPQAEAAEGTPQVGPLLRAALQTLN 198


>gi|317480654|ref|ZP_07939741.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 4_1_36]
 gi|316903161|gb|EFV25028.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 4_1_36]
          Length = 200

 Score =  151 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 105/205 (51%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G I  L     +ID  G+ Y +   + T + + +    C L+V   +R+D   L
Sbjct: 1   MIEYIRGGIAELSPATAVIDCNGLGYGVNISLNTYAAI-QGKKECKLYVYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F+LL SV G+G   A  +LS ++ +EL+  I  +N+ ++  + GI +K 
Sbjct: 60  YGFADKQERELFLLLISVSGIGGNTARMILSALSPSELINVISTENATLLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K  + S       +          +       A++AL  LG+ Q  +   
Sbjct: 120 AQRVIVDLKDKIKTGSVATGNAGTIG---TLVSAANVQVQEEAVAALTMLGFAQAPSQKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+++LK+E + A   Q+I+LAL+ +
Sbjct: 177 VLAILKEEPS-APVEQVIKLALKRL 200


>gi|291519343|emb|CBK74564.1| Holliday junction DNA helicase, RuvA subunit [Butyrivibrio
           fibrisolvens 16/4]
          Length = 205

 Score =  151 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 101/206 (49%), Gaps = 3/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G +  + E+ V+++  GV Y +   + T+  L  IG    L  +   ++D + L
Sbjct: 1   MFAYVRGTLSDIDENIVIVENNGVGYCLSSSMNTIRQLPAIGSEVKLNTKLIPKEDSLTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    + + F LL SV G+G + A+ +LS +T +++  ++  +++K  A  PGI  K 
Sbjct: 61  YGFYDKEELKMFELLLSVSGIGPKGALAILSSMTVSDIQFAVAGEDAKAFAACPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R + +LK K   + +   +  S ++ +++    + S     + ALV LGY    A  A
Sbjct: 121 AERAIIDLKDKVDIIGAFEAKITSDLSGKKSASPGI-SVKEEVLEALVALGYSASNAARA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +   E       Q++   L+ +S
Sbjct: 180 LDKMAITE--STTTEQLLGDTLKQMS 203


>gi|228993160|ref|ZP_04153082.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           pseudomycoides DSM 12442]
 gi|228999210|ref|ZP_04158791.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           mycoides Rock3-17]
 gi|229006757|ref|ZP_04164391.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           mycoides Rock1-4]
 gi|228754618|gb|EEM04029.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           mycoides Rock1-4]
 gi|228760555|gb|EEM09520.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           mycoides Rock3-17]
 gi|228766619|gb|EEM15260.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           pseudomycoides DSM 12442]
          Length = 212

 Score =  151 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 95/204 (46%), Gaps = 5/204 (2%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
              + G +E +  +YV++D  G+ Y I+ P        +      ++   ++R+D + L+
Sbjct: 9   FEYVTGYVEYVGPEYVVLDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALY 66

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF +  +R  F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K A
Sbjct: 67  GFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTA 126

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
            +++ +LKGK   +      D+    +         +    A+ AL  LGY + + +  V
Sbjct: 127 RQMILDLKGKLADVVPDAFVDLFSDVERFDEKKGSSAELDEALEALRALGYAEREVSRVV 186

Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205
             +LK+        Q I+ AL  +
Sbjct: 187 PELLKE---SLTTDQYIKKALSLL 207


>gi|325278890|ref|YP_004251432.1| Holliday junction ATP-dependent DNA helicase ruvA [Odoribacter
           splanchnicus DSM 20712]
 gi|324310699|gb|ADY31252.1| Holliday junction ATP-dependent DNA helicase ruvA [Odoribacter
           splanchnicus DSM 20712]
          Length = 193

 Score =  151 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 97/205 (47%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +      Y +I+  GV Y I   + T S +  +    +L++   +R+D + L
Sbjct: 1   MYEYIKGLLVEATPAYAVIECGGVGYYINISVNTYSQIVAL-QQVSLYIHQIVREDALLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L SV G+GA  A  +LS +T  E+  +I+ +N   I  + GI +K 
Sbjct: 60  YGFFNKEERTVFRQLISVSGIGANTASVMLSSMTVKEIAGAILTENVNAIKSVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K     S  + +               +    A++ALV LG+ + QA   
Sbjct: 120 AQRVIIELKDKIAVTGSAEEMNFGASV----------AIKEEALAALVMLGFVKAQANKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  ++     +    ++I+ AL+ +
Sbjct: 170 LDKIMAG-GGVTSVEELIKQALKQL 193


>gi|308177527|ref|YP_003916933.1| Holliday junction ATP-dependent DNA helicase RuvA [Arthrobacter
           arilaitensis Re117]
 gi|307744990|emb|CBT75962.1| Holliday junction ATP-dependent DNA helicase RuvA [Arthrobacter
           arilaitensis Re117]
          Length = 205

 Score =  151 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 58/209 (27%), Positives = 103/209 (49%), Gaps = 12/209 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G ++ +  +  +IDV G   ++     TLS L   G   T+F    +R+D + L
Sbjct: 1   MISSLTGTVQAVALNTAVIDVNGFGMLVNATPGTLSALHA-GREATVFTSMVVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F +L SV G+G R  + +L+  +  E+  +   +++    ++ GI  K 
Sbjct: 60  FGFATAEERDVFEVLISVSGIGPRTGLAILAVHSPEEVRIAANTKDTAAFTKVSGIGPKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ EL GK +   + V       N        +  +    I AL  LG+ +  AT  
Sbjct: 120 ASRIVLELNGKLVPTGAPVPSSSGGGN--------VSVWEPQVIEALTGLGWSEKDATAT 171

Query: 181 VVSVLKKEKNI---ADDSQIIRLALRAIS 206
           + S+ K + ++    + ++I+R ALR++S
Sbjct: 172 LKSLSKADPDVIAAGNVAEILRAALRSMS 200


>gi|229013638|ref|ZP_04170769.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           mycoides DSM 2048]
 gi|229169164|ref|ZP_04296879.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           AH621]
 gi|228614392|gb|EEK71502.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           AH621]
 gi|228747697|gb|EEL97569.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           mycoides DSM 2048]
          Length = 212

 Score =  151 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 48/204 (23%), Positives = 94/204 (46%), Gaps = 5/204 (2%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
              + G +E +  +YV+ID  G+ Y I+ P        +      ++   ++R+D + L+
Sbjct: 9   FEYVTGYVEYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALY 66

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF +  +R  F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K A
Sbjct: 67  GFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTA 126

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
            +++ +LKGK   +      D+    +              A+ AL  LGY + + +  V
Sbjct: 127 RQMILDLKGKLADVVPDAFVDLFSDTESFDTKKGSSVELDEALEALRALGYAEREVSRVV 186

Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205
             +LK+        Q I+ AL  +
Sbjct: 187 PELLKE---SLTTDQYIKKALSLL 207


>gi|149277483|ref|ZP_01883624.1| Holliday junction DNA helicase [Pedobacter sp. BAL39]
 gi|149231716|gb|EDM37094.1| Holliday junction DNA helicase [Pedobacter sp. BAL39]
          Length = 194

 Score =  151 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 99/205 (48%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +      Y++++  G+ Y I   + T S LG + + C ++   H+++D   L
Sbjct: 1   MFEYIDGRLSFKCPAYIVVEAGGIGYHINISLNTYSLLGDM-ERCKIYTWLHVKEDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + +R+ F+ L SV G+GA  A  +LS IT  E+  +I+  +  +I +I GI  K 
Sbjct: 60  YGFAEEGERRLFLHLISVSGIGANTARMMLSSITPIEIQTAIVNGDLPLIQRIKGIGAKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K     S                    +    A+SAL+ LG+ +  A  A
Sbjct: 120 AQRLVLELQDKLKKEGSGS----------LIAAPLNHTVREEALSALMMLGFAKQPAEKA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + + +K         Q+I++AL+ +
Sbjct: 170 LDNAVKTGGVELSVEQMIKIALKNL 194


>gi|270296033|ref|ZP_06202233.1| Holliday junction DNA helicase RuvA [Bacteroides sp. D20]
 gi|270273437|gb|EFA19299.1| Holliday junction DNA helicase RuvA [Bacteroides sp. D20]
          Length = 200

 Score =  151 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 106/205 (51%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G I  L     +ID  G+ Y +   + T + + +    C L++   +R+D   L
Sbjct: 1   MIEYIRGGIAELSPATAIIDCNGLGYGVNISLNTYAAI-QGKKECKLYIYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F+LL SV G+G   A  +LS ++ +EL+  I  +N+ ++  + GI +K 
Sbjct: 60  YGFADKQERELFLLLISVSGIGGNTARMILSALSPSELINVISTENATLLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K  + S V     +          +       A++AL  LG+ Q  +   
Sbjct: 120 AQRIIVDLKDKIKTGSVVAGNAGTIG---TLVSAANAQVQEEAVAALTMLGFAQAPSQKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+++LK+E + A   Q+I+LAL+ +
Sbjct: 177 VLAILKEEPS-APVEQVIKLALKRL 200


>gi|89899549|ref|YP_522020.1| Holliday junction DNA helicase RuvA [Rhodoferax ferrireducens T118]
 gi|123091484|sp|Q220R4|RUVA_RHOFD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|89344286|gb|ABD68489.1| Holliday junction DNA helicase RuvA [Rhodoferax ferrireducens T118]
          Length = 190

 Score =  151 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 17/205 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++      V++D  GV Y +  P+ T   L ++G   +L     +R+D   L
Sbjct: 1   MIGKLSGTLDDKNPPQVIVDCHGVGYEVLVPMSTFYNLPELGARVSLLTHFVVREDAQIL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  + GVG R A+ VLS ++  EL +++ LQ    + ++PGI  K 
Sbjct: 61  YGFATSQERAAFRELIKISGVGPRTALSVLSGMSVAELAQAVTLQEGGRLIKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R              +++                     + + AL+ LGY        
Sbjct: 121 AER-------------LLLELKGKLGPDIGVAASVANDSQADILQALLALGYS----DKE 163

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             + LK   +    S+ IRLALRA+
Sbjct: 164 AAAALKALPSDVGVSEGIRLALRAL 188


>gi|326773260|ref|ZP_08232543.1| holliday junction DNA helicase RuvA [Actinomyces viscosus C505]
 gi|326636490|gb|EGE37393.1| holliday junction DNA helicase RuvA [Actinomyces viscosus C505]
          Length = 217

 Score =  151 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 56/212 (26%), Positives = 100/212 (47%), Gaps = 8/212 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +     +I+  GV   I     TLS L ++G+   +  E  +R+D + L
Sbjct: 1   MIASLRGTVLSVGLTSAVIETGGVGMSIQATPTTLSGL-RVGEETLVHTEMVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  L S +GVGA++A+ +L+  T   L  +I  Q+   + ++PG+  K 
Sbjct: 60  FGFADTDERDSFRTLMSAKGVGAKLALAMLAVHTPNALRRAIASQDVAALTRVPGLGPKG 119

Query: 121 ASRIMTELKGKAISLS----SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ ++  K   ++       Q         +A     P    + ++ALV LG+ +  
Sbjct: 120 AQRVILDVADKLGPVTGDDLGAAQTVAQSAQGVEAMSDGGPEPHADVVAALVQLGWNEAS 179

Query: 177 ATTAVVSVLKKEKNI---ADDSQIIRLALRAI 205
           A  AV SV     +     D + ++R +LR +
Sbjct: 180 AQQAVSSVTADAADGGQEPDMAAVLRASLRWL 211


>gi|157825657|ref|YP_001493377.1| Holliday junction DNA helicase RuvA [Rickettsia akari str.
           Hartford]
 gi|166200253|sp|A8GN94|RUVA_RICAH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|157799615|gb|ABV74869.1| Holliday junction DNA helicase motor protein [Rickettsia akari str.
           Hartford]
          Length = 203

 Score =  151 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 72/203 (35%), Positives = 120/203 (59%), Gaps = 6/203 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G I+   +DY++IDV GV Y++Y   +TL  L + G+F  LF+ETH+R++ I L
Sbjct: 1   MIGKLSGKIDAQGDDYIIIDVNGVGYLVYASGKTLGKLSE-GEFYKLFIETHVREEHIHL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++ +F LLQSV G+G R+A+ +LS +T T++  +I  ++  +   I G+  K+
Sbjct: 60  YGFLTIEEKNFFNLLQSVNGIGTRMALSILSNLTPTDIQIAINNEDKDIFKAISGVGAKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELKGK   +S       + +N            +   I ALVNLG+ + +A  +
Sbjct: 120 AERIVLELKGKVAKIS----TGAAIINDSLNIKNITSVASNEVIKALVNLGFSRFEAQNS 175

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  ++ +   I    ++I+ AL+
Sbjct: 176 VQGIVIQNPEI-SIDELIKTALK 197


>gi|153809430|ref|ZP_01962098.1| hypothetical protein BACCAC_03744 [Bacteroides caccae ATCC 43185]
 gi|149128016|gb|EDM19238.1| hypothetical protein BACCAC_03744 [Bacteroides caccae ATCC 43185]
          Length = 201

 Score =  151 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 102/205 (49%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  L     +ID  GV Y     + T S + +    C LF+   +R+D   L
Sbjct: 1   MIEYVRGELAELSPATAVIDCNGVGYAANISLNTYSAI-QGKKTCKLFIYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F+LL SV G+G   A  +LS ++ +ELV  I  +N+ ++  + GI +K 
Sbjct: 60  YGFADKQEREIFLLLISVSGIGGNTARMILSALSPSELVSVISAENANLLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K  ++        +          +       A++AL  LG+    +   
Sbjct: 120 AQRLIVELKDKIKTVGMAAVGGTTSAGMLL--QSANAEVQEEAVAALTMLGFAAAPSQKV 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V++VLK+E   A   ++I+LAL+ +
Sbjct: 178 VLAVLKEEPE-APVEKVIKLALKRL 201


>gi|149183130|ref|ZP_01861580.1| Holliday junction DNA helicase motor protein [Bacillus sp. SG-1]
 gi|148849162|gb|EDL63362.1| Holliday junction DNA helicase motor protein [Bacillus sp. SG-1]
          Length = 202

 Score =  151 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 101/205 (49%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G ++ +  +YV+++  G+ Y I+     L    +     T++   H+R+D + L
Sbjct: 1   MYEYINGTVKRVGPEYVVLENGGIGYQIFTSNPFLFSKFE-NQNTTIYTYQHVREDILAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  ++  F+ L +V G+G + A+ +L+     +++ +I  ++ + + + PG+  K 
Sbjct: 60  YGFLSMEEKMLFIKLLNVSGIGPKGALAILASGAPEQVISAIEGEDERFLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   +      ++    K ++ + +       A  AL  LGY + +    
Sbjct: 120 ARQMILDLKGKLQDVVPDYFPNLFQEGKHES-VSANDELVEEAALALKALGYSEREIKKV 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +  ++K      ++I+ AL+ +
Sbjct: 179 TPKLSSQDK---TTDELIKDALKLL 200


>gi|94496110|ref|ZP_01302688.1| probable holliday junction DNA helicase protein [Sphingomonas sp.
           SKA58]
 gi|94424289|gb|EAT09312.1| probable holliday junction DNA helicase protein [Sphingomonas sp.
           SKA58]
          Length = 202

 Score =  151 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 67/206 (32%), Positives = 110/206 (53%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K++G ++    D+ +IDV GV Y++    RTL+ LG +G+  T+  E  + +D IRL
Sbjct: 1   MIAKLRGLLDSTGIDHAVIDVGGVGYLVGASSRTLAALGPVGEAVTIHTEMLVAEDSIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF    +R W+ LL  VQGVG+RVA+ +LS +   EL  ++   +  ++ +  G+  K+
Sbjct: 61  VGFARADERDWYRLLTHVQGVGSRVALAILSALEPAELHRAVATGDKAMVTRANGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K              +    A    + + + +A+SAL NLG+   +A+ A
Sbjct: 121 AQRIVNELKDKIG-----AAPAGGPIGVGGAVAMPVGNMSTDALSALQNLGFKPAEASAA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V +   +    A    ++RLALR  +
Sbjct: 176 VAAAEGELGEGASLDALVRLALRKAA 201


>gi|150009258|ref|YP_001304001.1| Holliday junction DNA helicase RuvA [Parabacteroides distasonis
           ATCC 8503]
 gi|256841816|ref|ZP_05547322.1| Holliday junction DNA helicase RuvA [Parabacteroides sp. D13]
 gi|298376955|ref|ZP_06986909.1| holliday junction DNA helicase RuvA [Bacteroides sp. 3_1_19]
 gi|301311050|ref|ZP_07216979.1| holliday junction DNA helicase RuvA [Bacteroides sp. 20_3]
 gi|166230579|sp|A6LFB5|RUVA_PARD8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|149937682|gb|ABR44379.1| Holliday junction DNA helicase RuvA [Parabacteroides distasonis
           ATCC 8503]
 gi|256736710|gb|EEU50038.1| Holliday junction DNA helicase RuvA [Parabacteroides sp. D13]
 gi|298265939|gb|EFI07598.1| holliday junction DNA helicase RuvA [Bacteroides sp. 3_1_19]
 gi|300831113|gb|EFK61754.1| holliday junction DNA helicase RuvA [Bacteroides sp. 20_3]
          Length = 196

 Score =  151 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 102/205 (49%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I  L    ++++  G+ Y +   + T S  G       +++   +R+D   L
Sbjct: 1   MIEYIKGEIVELTPTRMILECGGIGYELNISLNTYSAFGN-KTTGKIYIYEVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF   ++R+ F+LL SV GVG   A  +LS +  +ELV+ I  +N   +  + GI +K 
Sbjct: 60  FGFAEKIERELFLLLTSVSGVGPNTARMILSSLPPSELVQVIGSKNEAALTAVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K   + S+                S  +    A++ALV LG+ +  +  A
Sbjct: 120 AQRILVDLKNKVKPMESMAGNLPEAS-------VSNGAVTEEAVAALVMLGFQKAASQKA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++LK    +A   Q+I+ ALR +
Sbjct: 173 VSAILKGSPTLA-VEQVIKTALRML 196


>gi|182418560|ref|ZP_02949841.1| holliday junction DNA helicase RuvA [Clostridium butyricum 5521]
 gi|237668331|ref|ZP_04528315.1| Holliday junction DNA helicase RuvA [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182377563|gb|EDT75114.1| holliday junction DNA helicase RuvA [Clostridium butyricum 5521]
 gi|237656679|gb|EEP54235.1| Holliday junction DNA helicase RuvA [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 200

 Score =  151 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 106/205 (51%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG   G+ +DY++++  G+ Y I+    T+S + + G+   L+V+  +R+D I L
Sbjct: 1   MYEYIKGKYMGMNKDYIVVENSGIGYKIFTSGATMSSVPECGEEVILYVDQIVREDFIGL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +   F LL +V GVG + A+ +LS      L  +I+  + K I +  GI  K 
Sbjct: 61  YGFDSKEELAMFKLLLTVNGVGPKAALSLLSISRLNNLKYAIMTGDEKHICRGVGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ ELK K      +   D++  + +  +  +        +SAL+ LGY + ++   
Sbjct: 121 AARIILELKDKLQPDELL---DVAVDSNKDNNGENNLMAVSEVLSALIALGYSEKESEKV 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++ K E        +I+ AL+A+
Sbjct: 178 LKTIDKTE----TVENMIKNALKAL 198


>gi|160889167|ref|ZP_02070170.1| hypothetical protein BACUNI_01588 [Bacteroides uniformis ATCC 8492]
 gi|156861174|gb|EDO54605.1| hypothetical protein BACUNI_01588 [Bacteroides uniformis ATCC 8492]
          Length = 200

 Score =  151 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 106/205 (51%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G I  L     +ID  G+ Y +   + T + + +    C L++   +R+D   L
Sbjct: 1   MIEYIRGGIAELSPATAIIDCNGLGYGVNISLNTYAAI-QGKKECKLYIYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F+LL SV G+G   A  +LS ++ +EL+  I  +N+ ++  + GI +K 
Sbjct: 60  YGFADKQERELFLLLISVSGIGGNTARMILSALSPSELINVISTENATLLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K  + S V     +          +       AI+AL  LG+ Q  +   
Sbjct: 120 AQRIIVDLKDKIKTGSVVAGNAGTIG---TLVSAANAQVQEEAIAALTMLGFAQAPSQKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+++LK+E + A   Q+I+LAL+ +
Sbjct: 177 VLAILKEEPS-APVEQVIKLALKRL 200


>gi|332977850|gb|EGK14603.1| crossover junction ATP-dependent DNA helicase RuvA [Desmospora sp.
           8437]
          Length = 204

 Score =  150 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 55/204 (26%), Positives = 92/204 (45%), Gaps = 6/204 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +     + ++++  GV Y+I+C         + G+  T++    +R+D   L
Sbjct: 1   MIEFIRGTVAYRATEAIVVETGGVGYLIFCTHPLE---WEEGEEVTVYTHQVIREDAHTL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F LL  V G+G +VA+ V        LV ++  ++ + + ++PG+  K 
Sbjct: 58  YGFRERQVRDLFRLLLEVSGIGPKVALAVTGSGDPGRLVNAVEQEDLRFLTKLPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K                     +    S    AI AL  LGY +++AT A
Sbjct: 118 AQRIVLDLKDKLKKAGFSESTFSDVPVGISGEVARAGSA--EAIEALQALGYNEEEATRA 175

Query: 181 VVSVLKK-EKNIADDSQIIRLALR 203
           V    K   +   +  Q IR AL+
Sbjct: 176 VAMARKDFGEEEPELDQWIRRALQ 199


>gi|210635285|ref|ZP_03298481.1| hypothetical protein COLSTE_02412 [Collinsella stercoris DSM 13279]
 gi|210158446|gb|EEA89417.1| hypothetical protein COLSTE_02412 [Collinsella stercoris DSM 13279]
          Length = 208

 Score =  150 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 50/207 (24%), Positives = 99/207 (47%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +        +IDV GV + +     T + L ++G    L+    +R+D   L
Sbjct: 1   MISQLHGTVAEATPSMAVIDVNGVGFELGISGTTAAGLPQVGGKVLLYTRMVVREDSCTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L +V GVGA++A+ +L+  +  +L   ++ ++ K +A +PG+  K 
Sbjct: 61  FGFASKDERTMFDKLVAVSGVGAKLALAILTTFSVPQLYAVVMAEDDKGMATVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI--CSMPSFAINAISALVNLGYGQDQAT 178
           A R++ ELKG      S+    ++        +     P+   +A +AL+++G+   + +
Sbjct: 121 AQRLILELKGAFSKDRSLAGSAVAASIPLPLDVARPVAPNAMDDASAALLSMGFTPAEVS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            A+      +        ++  AL+ +
Sbjct: 181 LALS---GYDGADMRVEDLLAAALKRL 204


>gi|313159381|gb|EFR58745.1| Holliday junction DNA helicase RuvA [Alistipes sp. HGB5]
          Length = 194

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 95/205 (46%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  +   Y +ID  GV Y ++  + T S +    +   L+V   +R+D   L
Sbjct: 1   MYEYISGPVAEVAPAYAVIDAGGVGYYLHISLETFSAIEHT-ETARLYVHYVVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F  L SV GVG   A  +LS  +  EL   I   N+ ++  + G+ +K 
Sbjct: 60  YGFATKTERELFRHLISVSGVGGNTARMILSTYSPRELQGIITSGNAVLLKNVKGLGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ EL GK   L        +  N               A++ALV LG+ +  A  A
Sbjct: 120 AQKIIVELSGKLTGLGDADAALPAAGN---------GEKLEEALAALVMLGFAKTAAEKA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +L++    A    ++R+ L+++
Sbjct: 171 LRGILRENP-GASVEDLVRMGLKSL 194


>gi|307244215|ref|ZP_07526330.1| Holliday junction DNA helicase RuvA [Peptostreptococcus stomatis
           DSM 17678]
 gi|306492365|gb|EFM64403.1| Holliday junction DNA helicase RuvA [Peptostreptococcus stomatis
           DSM 17678]
          Length = 203

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 61/202 (30%), Positives = 101/202 (50%), Gaps = 9/202 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG IKG +E +  DYVLI+   + Y +     TLS L + GD   ++ +  +R+D I L
Sbjct: 1   MIGYIKGTVEYIGIDYVLIENNEIGYKLNASSNTLSQLNE-GDRVKVYTKMIVREDDISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF S  + + F LL SV  +G ++ + +LS  T ++L   I   ++K +++ PG+  K 
Sbjct: 60  CGFYSKEELEMFNLLTSVSKIGTKLGLAILSFATPSQLHLYISTSDTKTLSKAPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +   LS   +  +      +  +    +    AI AL+ LGY   ++  A
Sbjct: 120 AERMVLELKDRLGKLSISGEDFVG-----KPTVSMPTTSDGEAIDALIALGYTGQESKVA 174

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           V  V +          I++ AL
Sbjct: 175 VDFVKQ---PGMGVEDIVKKAL 193


>gi|255011116|ref|ZP_05283242.1| Holliday junction DNA helicase RuvA [Bacteroides fragilis 3_1_12]
 gi|313148926|ref|ZP_07811119.1| holliday junction DNA helicase ruvA [Bacteroides fragilis 3_1_12]
 gi|313137693|gb|EFR55053.1| holliday junction DNA helicase ruvA [Bacteroides fragilis 3_1_12]
          Length = 201

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 103/205 (50%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I  L     +ID  G+ Y +   + T S + +    C L++   +R+D   L
Sbjct: 1   MIEYIKGEIAELSPATAVIDCNGLGYAVNISLNTYSAI-QGKSSCKLYIYEAIREDAYVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   +R+ F+LL SV G+G   A  +LS ++  ELV  I  +N+ ++  + GI +K 
Sbjct: 60  YGFVDKQERELFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K  + +                +         A++AL  LG+    +   
Sbjct: 120 AQRVIVDLKDKIKTGAMAATAVGGAAGALLPAM--NAEVQEEAVAALTMLGFAAAPSQKV 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+++LK+E + A   ++I+LAL+ +
Sbjct: 178 VLAILKEEPD-APVEKVIKLALKRL 201


>gi|322382934|ref|ZP_08056766.1| Holliday junction DNA helicase RuvA-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321153054|gb|EFX45512.1| Holliday junction DNA helicase RuvA-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 207

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 105/205 (51%), Gaps = 2/205 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     DYV+IDV GV Y ++C         + G+  TLF+  H+R+D   L
Sbjct: 1   MIDYLRGQLAVREMDYVVIDVHGVGYQVFCS-NPFGISAREGEEVTLFIHYHVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  ++  F  L  V G+G +VA+G+L+      ++ +I  +N   + ++PGI  K 
Sbjct: 60  FGFTTREEQTLFRKLIEVSGIGPKVALGILTGGRPDAVIAAIQQENVGFLTKLPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K   L + +  +++ +   +A   SM      A  AL+ LGY + +A   
Sbjct: 120 AQRIILDLKDKLGLLPASIVDEVAVLTA-EAERNSMEGCWAEAKQALLALGYTETEADRT 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              + K  K       + +LAL+A+
Sbjct: 179 WHLIQKDVKPADPVDTVTKLALKAL 203


>gi|255015865|ref|ZP_05287991.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 2_1_7]
          Length = 196

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 102/205 (49%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I  L    ++++  G+ Y +   + T S  G       +++   +R+D   L
Sbjct: 1   MIEYIKGEIVELTPTRMILECGGIGYELNISLNTYSAFGS-KTTGKIYIYEVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF   ++R+ F+LL SV GVG   A  +LS +  +ELV+ I  +N   +  + GI +K 
Sbjct: 60  FGFAEKIERELFLLLTSVSGVGPNTARMILSSLPPSELVQVIGSKNEAALTAVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K   + S+                S  +    A++ALV LG+ +  +  A
Sbjct: 120 AQRILVDLKNKVKPMESMAGNLPEAS-------VSNGAVTEEAVAALVMLGFQKAASQKA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++LK    +A   Q+I+ ALR +
Sbjct: 173 VSAILKGSPTLA-VEQVIKTALRML 196


>gi|56963319|ref|YP_175050.1| Holliday junction DNA helicase RuvA [Bacillus clausii KSM-K16]
 gi|81366439|sp|Q5WHR6|RUVA_BACSK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|56909562|dbj|BAD64089.1| holliday junction DNA helicase RuvA [Bacillus clausii KSM-K16]
          Length = 199

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 96/205 (46%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKGN+  +   Y++++  G+ + IYC       +  +     +    ++R+D  RL
Sbjct: 1   MIDYIKGNLVAVEPAYLVVEANGIGFQIYC-ANPYRFINDLNREVVVPTHHYVREDSQRL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L +V G+G + A+ +L+     +++ +I  ++  ++ + PG+  K 
Sbjct: 60  FGFTTRTERLLFEKLLNVSGIGPKGALAILASGEPEDIIHAIEQEDEALLVRFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   ++ +++          A          +A+ AL  LGY + +    
Sbjct: 120 ARQIILDLKGKLDDMAPMLEPAAG------ADKQQKNPQLEDALEALRALGYVEKELKKV 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +  +     +  + IR AL  +
Sbjct: 174 EKQLKAE---TLETDEYIRRALALM 195


>gi|103485830|ref|YP_615391.1| Holliday junction DNA helicase RuvA [Sphingopyxis alaskensis
           RB2256]
 gi|123380148|sp|Q1GWB4|RUVA_SPHAL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|98975907|gb|ABF52058.1| Holliday junction DNA helicase RuvA [Sphingopyxis alaskensis
           RB2256]
          Length = 199

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 67/206 (32%), Positives = 109/206 (52%), Gaps = 8/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K+ G ++     + +IDV GV Y++    RTL  LG +G   T+  E  + +D +RL
Sbjct: 1   MIAKLTGRLDSNGAGHAVIDVGGVGYLVEASARTLDALGAVGGEVTIHTEMLVGEDFLRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF    +R WF LL SVQGVGA+VA+ +LS +   +L  ++   +S +IA+  G+  K+
Sbjct: 61  LGFARAEERDWFRLLTSVQGVGAKVALAILSALEVADLQRALASGDSAMIARANGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  ELK KA +L  +     +          +      +AI+AL  LG+   +A+ A
Sbjct: 121 AQRITHELKDKAGALGGISGSGPAL--------SAAAGPVGDAIAALTGLGFKPGEASAA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V +  ++    A    ++R+AL+  +
Sbjct: 173 VAAANEELGADASLDALVRVALKKAA 198


>gi|145640257|ref|ZP_01795841.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae R3021]
 gi|145274843|gb|EDK14705.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae 22.4-21]
          Length = 181

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 56/181 (30%), Positives = 91/181 (50%), Gaps = 1/181 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L++VQGV Y +  P+ +   L +IG   TLF    +R+D   L
Sbjct: 1   MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    DR  F  L    GVG ++A+ +LS ++  +   +I  +    + +IPG+  K 
Sbjct: 61  FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAHAIEREELSKLTKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELKGK   +  S    + + +    +      S +  AISAL+ LGY   +A  
Sbjct: 121 AERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESSSDEAISALIALGYKPAEAEK 180

Query: 180 A 180
            
Sbjct: 181 W 181


>gi|329945621|ref|ZP_08293354.1| Holliday junction DNA helicase RuvA, N terminal domain protein
           [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328528624|gb|EGF55589.1| Holliday junction DNA helicase RuvA, N terminal domain protein
           [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 218

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 54/213 (25%), Positives = 98/213 (46%), Gaps = 9/213 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +     +I+  GV   I     TLS L +IG+   +  E  +R+D + L
Sbjct: 1   MIASLRGTVLSVGLTGAVIETGGVGMSIQATPTTLSGL-RIGEEVLVHTELVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  L S +GVGA++A+ +L+  T   L  +I  Q+   + ++PG+  K 
Sbjct: 60  FGFTDVDERDSFRTLMSAKGVGAKLALAMLAVHTPNMLRRAIASQDVAALTRVPGLGPKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI-----CSMPSFAINAISALVNLGYGQD 175
           A R++ ++  K   ++           K                + + ++ALV LG+ + 
Sbjct: 120 AQRVILDVADKLGPVTGDDADTAMPAAKAIGDKGVETFSEGAQPSADVVAALVQLGWNEA 179

Query: 176 QATTAVVSVL---KKEKNIADDSQIIRLALRAI 205
            A  AV +V     +     D + ++R +LR +
Sbjct: 180 SARQAVTAVEADYAEAGENPDMAALLRASLRWL 212


>gi|225018933|ref|ZP_03708125.1| hypothetical protein CLOSTMETH_02884 [Clostridium methylpentosum
           DSM 5476]
 gi|224948277|gb|EEG29486.1| hypothetical protein CLOSTMETH_02884 [Clostridium methylpentosum
           DSM 5476]
          Length = 202

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 64/210 (30%), Positives = 98/210 (46%), Gaps = 13/210 (6%)

Query: 1   MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MI  I+G +E L         +ID  G+ Y I   + T S L K G    L+   ++R+D
Sbjct: 1   MIYSIQGELELLTPADNHFLAVIDCGGIGYEIRTTMTTASQL-KQGGKAKLYTYLNVRED 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
            + LFGF    +R  F +L SV GVG + A+ +LS +T ++    +   +SK + +  GI
Sbjct: 60  AVELFGFFDTEERNCFKMLISVSGVGPKAALSILSNVTPSQFALCVASGDSKSLTRAKGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             KIA RI+ ELK K  +     Q      +     + S       A+SALV LGY +  
Sbjct: 120 GAKIAQRIVLELKDKISN----EQLAGGVTDSGSVALPSGSGNTAEAVSALVVLGYNKTD 175

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           A  A    L          ++I+  L+A++
Sbjct: 176 AVQA----LSSYPADTPVEELIKAGLKALA 201


>gi|262384145|ref|ZP_06077281.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 2_1_33B]
 gi|262295043|gb|EEY82975.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 2_1_33B]
          Length = 196

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 102/205 (49%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I  L    ++++  G+ Y +   + T S  G       +++   +R+D   L
Sbjct: 1   MIEYIKGEIVELTPTRMILECGGIGYELNISLNTYSAFGN-KTTGKIYIYEVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF   ++R+ F+LL SV GVG   A  +LS +  +ELV+ I  +N   +  + GI +K 
Sbjct: 60  FGFAEKIERELFLLLTSVSGVGPNTARMILSSLPPSELVQVIGSKNEAALTAVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K   + S+                S  +    A++ALV LG+ +  +  A
Sbjct: 120 AQRILVDLKNKVKPMESMAGNLPEAS-------ISNGAVTEEAVAALVMLGFQKAASQKA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++LK    +A   Q+I+ ALR +
Sbjct: 173 VSAILKGSPTLA-VEQVIKTALRML 196


>gi|222109711|ref|YP_002551975.1| holliday junction DNA helicase ruva [Acidovorax ebreus TPSY]
 gi|254766958|sp|B9MCH5|RUVA_DIAST RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|221729155|gb|ACM31975.1| Holliday junction DNA helicase RuvA [Acidovorax ebreus TPSY]
          Length = 190

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 95/206 (46%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +       VL+D  GV Y +   + T   L  +G+  +L  +  +R+D   L
Sbjct: 1   MIGKLTGTLLEKNPPEVLVDCHGVGYEVLVSMSTFYNLPAVGERVSLLTQFIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +RQ F  L  + GVG R A+ +LS +   +L +++ LQ +  + ++PGI  K 
Sbjct: 61  YGFGTAQERQAFRELIKISGVGPRTALSILSGMGVADLAQAVSLQEAGRLVKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R              +++              +      + + AL+ LGY   +A  A
Sbjct: 121 AER-------------LLLELKGKLGADVGVRAHAANDNQADILQALLALGYNDKEAAAA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + ++          S+ I+LAL+++S
Sbjct: 168 LKALPADVG----VSEGIKLALKSLS 189


>gi|108762337|ref|YP_633128.1| Holliday junction DNA helicase RuvA [Myxococcus xanthus DK 1622]
 gi|123374257|sp|Q1D2J5|RUVA_MYXXD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|108466217|gb|ABF91402.1| Holliday junction DNA helicase RuvA [Myxococcus xanthus DK 1622]
          Length = 202

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 97/205 (47%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +     +   IDV GV Y +      L  L   G    + V T +R+D   L
Sbjct: 1   MISRLRGTVLEKDLEDATIDVGGVGYRVNFSSLALGKLPAEGQPVDVRVRTVVREDAFDL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  + + F+LL SV  VG R+++ VLS +   ELV ++       +A+I G+  K 
Sbjct: 61  FGFLTKGEEEVFLLLNSVSRVGPRLSLMVLSGMEVPELVAALSRGEVARLAKIHGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K  ++                   ++     + +SAL+NLGY Q QA  A
Sbjct: 121 AERLVLELKDKVKTIHLEAVS-------RGTAPAAVSGAHADLVSALLNLGYKQPQAEKA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
                ++    A    + R AL+A+
Sbjct: 174 ADLASERLGAEATFQALFREALKAL 198


>gi|331269238|ref|YP_004395730.1| Holliday junction DNA helicase RuvA [Clostridium botulinum
           BKT015925]
 gi|329125788|gb|AEB75733.1| Holliday junction DNA helicase RuvA [Clostridium botulinum
           BKT015925]
          Length = 200

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 106/205 (51%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG    L +DY++++   + Y IY    T++ +  I +   +++E  +R+D I +
Sbjct: 1   MFEYIKGIYISLNKDYIVVESNNIGYKIYTSGNTMANMPNINEKVKIYIEQIVREDFIGI 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL++ +R  F LL ++ GVG++ A+ +LS      L +SI+ ++ K++ + PGI  KI
Sbjct: 61  YGFLTEEERAMFNLLLTINGVGSKAALSLLSISNVCSLKKSILSEDYKMLTKAPGIGKKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  ELK K   +    +  +   N       +       A+ AL+ LG+ Q +A  A
Sbjct: 121 AQRITLELKDKIEKIY---EDSLEEDNDIDNLSKNSTRKYDEALEALIALGFSQKEAEKA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +   +       +II+ +LR +
Sbjct: 178 LKDIDITKG----IEEIIKDSLRYL 198


>gi|260437054|ref|ZP_05790870.1| holliday junction DNA helicase RuvA [Butyrivibrio crossotus DSM
           2876]
 gi|292810363|gb|EFF69568.1| holliday junction DNA helicase RuvA [Butyrivibrio crossotus DSM
           2876]
          Length = 198

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 101/206 (49%), Gaps = 10/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G +  +  + ++++  GV Y I  P   +  L  IG    ++   ++++D + L
Sbjct: 1   MITYIVGELTYIDNNTIILEACGVGYEITVPESVIPSLPGIGSSIKIYTYQNVKEDALDL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  D + F  L +V G+G + A+ +LS I+  EL  ++I  + K I   PGI  K 
Sbjct: 61  YGFLTMDDLKIFKQLITVNGIGPKGALSILSVISPDELRLAVISDDVKKIQSAPGIGSKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK K              V         + S    A+SAL++LGY   ++ +A
Sbjct: 121 AQKLIIELKDKLK--------IEDVVYDLHDEKDIVKSVRDEAVSALISLGYSNSESVSA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V +++  E        I++ AL+ ++
Sbjct: 173 VSALVITE--NMTSEDILKQALKKLA 196


>gi|295839916|ref|ZP_06826849.1| Holliday junction DNA helicase RuvA [Streptomyces sp. SPB74]
 gi|197696745|gb|EDY43678.1| Holliday junction DNA helicase RuvA [Streptomyces sp. SPB74]
          Length = 206

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 54/209 (25%), Positives = 99/209 (47%), Gaps = 9/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L     +++V G+   + C   TLS L +IG+   +     +R+D + L
Sbjct: 1   MIAFVSGPVAALGPTSAVVEVGGIGMAVQCTPHTLSTL-RIGEQARIATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+ ++   L  ++   + K +  +PGI  K 
Sbjct: 60  YGFADDDERQTFELLQTASGVGPRLAQAMLATLSPDALRLAVSTADEKALTAVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK +              +  ++        +     +ALV LGY   +A  A
Sbjct: 120 AQKLILELKDRLGQ-----PLGTGTLGAQRRAAAGPAPWTEQLHNALVGLGYQPREAEEA 174

Query: 181 VVSVLKKEKNIADDSQ---IIRLALRAIS 206
           V +V  + +      +   ++R AL+ ++
Sbjct: 175 VEAVTPQAEAQEGVPEIGPLLRAALQTLN 203


>gi|323142288|ref|ZP_08077120.1| Holliday junction DNA helicase RuvA [Phascolarctobacterium sp. YIT
           12067]
 gi|322413172|gb|EFY04059.1| Holliday junction DNA helicase RuvA [Phascolarctobacterium sp. YIT
           12067]
          Length = 200

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 9/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG +KG ++ L  D  +I+   GV Y ++ P   L+ L + G    L + T +R+D I 
Sbjct: 1   MIGSLKGTVDSLGIDNCIIETAGGVGYRVFMPAAQLAQLTQ-GASVRLHIHTAVREDAIV 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFLS      F LL ++ GVG ++A+G+LS +       ++  ++ KV+ ++PGI  K
Sbjct: 60  LYGFLSREYYDLFELLLTISGVGPKMALGILSAVKPDAFYLAVQSRDIKVLTKLPGIGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ ELK K   +++      S  +  +A           AI AL +LGY   +   
Sbjct: 120 TAERLLLELKDKVGPVAAE-----SADSFGEAVAAGGSGAVAEAIEALASLGYSNSEIMP 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            +  +  +        +I++ ALR +
Sbjct: 175 VIKKI--EGAETKTSEEILKQALRLM 198


>gi|333029161|ref|ZP_08457222.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacteroides
           coprosuis DSM 18011]
 gi|332739758|gb|EGJ70240.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacteroides
           coprosuis DSM 18011]
          Length = 199

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 107/205 (52%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +  L     ++D  GV Y +   + T S L +    C L+++  +R+D  +L
Sbjct: 1   MIEYVKGELAELTPAQAVVDCNGVGYGVSISLNTYSAL-QGKKECKLYIQEVIREDAHQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF++  +R+ F+LL SV G+G   A  +LS ++  ELVE+I  +N+K++  + GI  K 
Sbjct: 60  FGFINKEERELFLLLNSVSGIGGNTARMILSALSPVELVEAIGTENTKLLQSVKGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K  S + V    ++      + +         +ISAL  LG+        
Sbjct: 120 AERIIVDLKDKIKSTAIVENGHVTVGESTLSDM----DIYNESISALTMLGFAPAPTRKV 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++ K+  N     ++++LAL+ +
Sbjct: 176 VHAIFKENPNH-TIEEVVKLALKRL 199


>gi|329957833|ref|ZP_08298308.1| Holliday junction DNA helicase RuvA [Bacteroides clarus YIT 12056]
 gi|328522710|gb|EGF49819.1| Holliday junction DNA helicase RuvA [Bacteroides clarus YIT 12056]
          Length = 200

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 105/205 (51%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I  L     +ID  G+ Y     + T + + +    C L++   +R+D   L
Sbjct: 1   MIEYIKGEIAELSPASAIIDCNGLGYAANISLNTYAAI-QGKKSCKLYIYEAIREDAYIL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F+LL SV G+G   A  +LS ++ +EL+  I  +N+ ++  + GI +K 
Sbjct: 60  YGFADKQERELFLLLISVSGIGGNTARMILSALSPSELINVISTENANLLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K  +   V     +      A   +       A++AL  LG+ Q  +   
Sbjct: 120 AQRVIVDLKDKIKTGGMVSG---AADITGPAFTAANAQVQEEAVAALTMLGFAQAPSQKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+++LK++ N A   Q+I+LAL+ +
Sbjct: 177 VMAILKEDAN-APVEQVIKLALKRL 200


>gi|158320755|ref|YP_001513262.1| Holliday junction DNA helicase RuvA [Alkaliphilus oremlandii
           OhILAs]
 gi|167012655|sp|A8MHI4|RUVA_ALKOO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|158140954|gb|ABW19266.1| Holliday junction DNA helicase RuvA [Alkaliphilus oremlandii
           OhILAs]
          Length = 194

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 103/205 (50%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  +  D ++++V G+ Y I+  I ++S + K GD  T++    +R+D++ L
Sbjct: 1   MFEYLKGTVADILIDKIIVEVNGIGYRIHSTIHSVSQI-KKGDAITVYTHLVVREDELSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+S  +   F  L SV  +G +VA G+LS  T  +L   I+ ++   +++ PG+  K 
Sbjct: 60  YGFMSIEELDMFQKLISVSKIGPKVASGILSAYTPNKLSAYILSKDISALSKAPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K    + V    +   + +             A+ AL+ LGY + ++  A
Sbjct: 120 AERIILELKDKVDKTNVVYDYTLFNDDHKDD---------DEAVQALMALGYSKLESEKA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +V            +I+ AL+ +
Sbjct: 171 VEAVR---DMSLGTEDVIKRALKWL 192


>gi|302561707|ref|ZP_07314049.1| Holliday junction DNA helicase RuvA [Streptomyces griseoflavus
           Tu4000]
 gi|302479325|gb|EFL42418.1| Holliday junction DNA helicase RuvA [Streptomyces griseoflavus
           Tu4000]
          Length = 201

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 56/209 (26%), Positives = 97/209 (46%), Gaps = 14/209 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L  D  +++V GV   + C   TLS L ++G    L     +R+D + L
Sbjct: 1   MIAFVSGTVAALAPDAAVVEVGGVGMAVQCTPNTLSTL-RVGQPAKLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F+LLQ+  GVG R+A  +L+  +   L  ++   + K +  +PGI  K 
Sbjct: 60  YGFADDDERQVFVLLQTASGVGPRLAQAMLAVHSPDALRGAVATGDEKALTAVPGIGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK +              V            +     +AL+ LGY   +A  A
Sbjct: 120 AQKLLLELKDRLGE----------PVGAPAVGAPVTSGWRDQLHAALIGLGYATREADEA 169

Query: 181 VVSV---LKKEKNIADDSQIIRLALRAIS 206
           V +V    +  +      Q+++ AL+ ++
Sbjct: 170 VAAVTPQAEAAEGTPQVGQLLKAALQTLN 198


>gi|194468325|ref|ZP_03074311.1| Holliday junction DNA helicase RuvA [Lactobacillus reuteri 100-23]
 gi|194453178|gb|EDX42076.1| Holliday junction DNA helicase RuvA [Lactobacillus reuteri 100-23]
          Length = 199

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 95/206 (46%), Gaps = 7/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +  +   Y+++DV GV Y +                  ++V   +R+D I L
Sbjct: 1   MYEYLTGLVTVVAPQYIVVDVNGVGYKLLV-ANPYRYQEDRTKKVRVYVYQAVREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    ++  FM L +V G+G + A+ +L+      LV++I   N   + + PGI  K 
Sbjct: 60  FGFTDQNEKNLFMQLINVSGIGPKSALAILANPDHQGLVDAITNNNVSYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +L+ K  +              + A   ++ S   +A+ AL  LGY +      
Sbjct: 120 ASQIVLDLRDKLTN----ESSSSLFATTQLAVDTTVNSELKDALEALAALGYKERDIKKV 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
             +++K+E+   D  + +R ALR ++
Sbjct: 176 QKTLMKEEQMATD--EYLRQALRLLN 199


>gi|313114599|ref|ZP_07800107.1| Holliday junction DNA helicase RuvA [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310623063|gb|EFQ06510.1| Holliday junction DNA helicase RuvA [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 203

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 93/206 (45%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G I     + V++   GV Y   CP      L  +G   T++    + ++ + L
Sbjct: 1   MIYCLTGKIVKKSMNAVVLSCGGVGYYAQCPASVAGALPGVGKEATIYTVMSVTENDVSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++  +  F +L +V GVG +V + +LS +    +  +I   + K      G+  K+
Sbjct: 61  YGFATEEQQACFEMLTAVSGVGPKVGLAILSVMEPDRVALAISAGDHKAFKAASGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K       V           +        +  AI+ALV+LGY Q +A  A
Sbjct: 121 AQRIVLELKDKVAK--GFVDGISLEDVAGASADTQASQGSSQAIAALVSLGYSQSEAALA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  +           +II+LALR+++
Sbjct: 179 VSKIDAALP----VEEIIKLALRSMA 200


>gi|325268803|ref|ZP_08135428.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella
           multiformis DSM 16608]
 gi|324988775|gb|EGC20733.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella
           multiformis DSM 16608]
          Length = 246

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 59/209 (28%), Positives = 98/209 (46%), Gaps = 9/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMR----QD 56
           MI  I+G +  L     +++  GV Y +   + T S L +      L+V   +      D
Sbjct: 42  MIEYIRGELADLTPALAVVEAHGVGYALNISLNTYSAL-QGKTTVKLYVHEAIMTGGRDD 100

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF S  +R  + LL +V GVGA  A  +LS +T  EL   I   + K++  + GI
Sbjct: 101 SYTLYGFASRQERSLYRLLITVSGVGANTARMILSSLTPAELCNVIANADEKMLKTVKGI 160

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
            ++ A RI+ +LK K +        D   V+ +        +    A+SAL  LG+    
Sbjct: 161 GLRTAQRIIVDLKDKIMQ---SGIADELHVSSQPGTPAVDTAIKDEAVSALTMLGFSPAP 217

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           +   VVS+L  + ++    Q+++LAL+ I
Sbjct: 218 SAKVVVSILTDQPDLP-VEQVVKLALKMI 245


>gi|307266570|ref|ZP_07548102.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306918424|gb|EFN48666.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 187

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 101/205 (49%), Gaps = 20/205 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G IE + +DYV+ID  G+   ++ P  TL  L   G+   L+   HMR+D +++
Sbjct: 1   MIEYIRGMIEDIGQDYVVIDFMGIGIKVFVPFSTLKVLPSKGNITKLYTYLHMREDGLQI 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +   F  L SV GVG + A+ +LS ++    V+++ + + K +   PGI  K 
Sbjct: 61  FGFKTKEELDLFEKLLSVSGVGPKGALSILSVVSIDNFVKAVNVGDYKALTIAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K                  +  +    +F+  A+ AL+ LGY + +A  A
Sbjct: 121 AERIILELKDKLPK---------------KIVLEGDNNFSNEALEALLALGYTKSEAIYA 165

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +           + ++ AL+ +
Sbjct: 166 LADI-----TCDSVEEAVKQALKKL 185


>gi|294010085|ref|YP_003543545.1| Holliday junction resolvasome DNA-binding subunit [Sphingobium
           japonicum UT26S]
 gi|292673415|dbj|BAI94933.1| Holliday junction resolvasome DNA-binding subunit [Sphingobium
           japonicum UT26S]
          Length = 202

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 107/206 (51%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI K+KG ++    D+ +IDV GV Y++    RTL+ LG +G+  T+  E  +  D IRL
Sbjct: 1   MIAKLKGRLDSTGLDHAIIDVGGVGYLVGASSRTLAALGPVGEAVTVHTEMLVSDDAIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF    +R WF LL  VQGVG+RVA+ +LS +   EL  ++   +  +IA+  G+  K+
Sbjct: 61  VGFARAEERDWFRLLTGVQGVGSRVALAILSALEPVELHRAVAAGDKAMIARANGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  ELK K            +               + +AISAL NLG+   +A+ A
Sbjct: 121 AQRIANELKDKIG-----AAPMPAGAVGAGFAALPTGGHSADAISALQNLGFKPAEASIA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V +  ++    A    ++RLALR  +
Sbjct: 176 VAAAEEELGEDASLDALVRLALRKAA 201


>gi|72162493|ref|YP_290150.1| Holliday junction DNA helicase subunit RuvA [Thermobifida fusca YX]
 gi|90136068|sp|Q47N42|RUVA_THEFY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|71916225|gb|AAZ56127.1| Holliday junction DNA helicase subunit RuvA [Thermobifida fusca YX]
          Length = 202

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 104/206 (50%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +     +  +IDV GV   ++C    L+ L ++G+  T+     +R+D + L
Sbjct: 1   MIAFLSGRVVSRGAETAVIDVGGVGMTVHCTPAALARL-RVGEEATVATALVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF  D +R  F  LQ+  GVG R+A+ +LS  T   L  +I  +++  + ++PGI  K 
Sbjct: 60  FGFADDDERDTFERLQTASGVGPRLALAMLSVHTPDALRRAIATEDTAALTRVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELKGK            +    EQ+   +  ++    +S LVNLG+   +A  A
Sbjct: 120 AQRIVLELKGKLGEPGGD-----TAATPEQSAAAAPRNWRAQVVSGLVNLGWSTREAEAA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
             +V  +     D + ++R ALR +S
Sbjct: 175 ADAVAAEAGEQPDVAALLRSALRRLS 200


>gi|254431586|ref|ZP_05045289.1| Holliday junction DNA helicase RuvA [Cyanobium sp. PCC 7001]
 gi|197626039|gb|EDY38598.1| Holliday junction DNA helicase RuvA [Cyanobium sp. PCC 7001]
          Length = 214

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 55/211 (26%), Positives = 98/211 (46%), Gaps = 6/211 (2%)

Query: 1   MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG ++G+I   ++      +L+  +GV Y +    R    L   G    L +   +R+D
Sbjct: 1   MIGWLQGDIADPWQHDKRCGLLLLCRGVGYEVQVSQRDWRRLPPPGSPLALHIHQSIRED 60

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF +  +R  F  L +V GVG ++AMG+L  +   ELV++I+  + + + Q PG+
Sbjct: 61  AWTLYGFTARQERDLFRDLVAVSGVGPQMAMGLLGALEMEELVQAIVQPDLRRLCQAPGV 120

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             + A R+  EL+ +         +  +  + EQ    +  S   +    LV+LG+   +
Sbjct: 121 GKRTAERLAVELRVRLQERYLGAVETAAEADPEQLPGLADGS-RDDICGTLVSLGFADLE 179

Query: 177 ATTAVVSVLKK-EKNIADDSQIIRLALRAIS 206
              A+ +V  +     A     IR  LR +S
Sbjct: 180 IHRALRAVASQGLTAEASTEDWIRDCLRWLS 210


>gi|283853683|ref|ZP_06370914.1| Holliday junction DNA helicase RuvA [Desulfovibrio sp. FW1012B]
 gi|283570924|gb|EFC18953.1| Holliday junction DNA helicase RuvA [Desulfovibrio sp. FW1012B]
          Length = 201

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 11/207 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG ++G +    E + ++    GV Y +  P    + L   G    LFV T +R+D + 
Sbjct: 1   MIGYVEGRVLARRERWAIVLTPGGVGYELELPDPVAAALPPQGGQVCLFVHTVVREDALE 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF +  DR+ F  L  +  +G R A+ +LSR T  +L+  +   ++  + ++PGI  K
Sbjct: 61  LFGFATLDDRETFRTLIGITKLGPRTALAILSRFTTEDLLRIVATGDADALVRVPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI  EL  K      V       +               + I+ L NLGY    A+ 
Sbjct: 121 SAQRIFIELTYKLEGKGPVSAGPHPAIG---------GGVLADVIAGLTNLGYPDADASR 171

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
              +VL+ E ++ D +Q +R AL+ ++
Sbjct: 172 VAGAVLEAEPDL-DVAQALRQALKRLA 197


>gi|170759601|ref|YP_001788391.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A3 str.
           Loch Maree]
 gi|229560024|sp|B1L0B3|RUVA_CLOBM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|169406590|gb|ACA55001.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 197

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 104/205 (50%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG    +Y+DY++I+   + Y IY    T++ L  IG+   L+ E  +R+D I +
Sbjct: 1   MYEYIKGKYIDMYKDYIVIENNNIGYKIYTSGSTMAKLPSIGENIMLYTEQIVREDFIGI 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +   F LL ++ GVGA+ A+ +LS    + L  +I + + K I + PGI  K 
Sbjct: 61  YGFLTKDELSMFKLLLTINGVGAKAALSLLSISNVSTLKYAIKVGDEKTITRAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K               +++  +  +     + A++ALV LGY + +A+  
Sbjct: 121 AQRIILELKDKIE------IDISEEDDEQIINKVTDDKKVLEAVAALVTLGYSEKEASKV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +    K         QII+ AL+ +
Sbjct: 175 INLCDKNN----SLEQIIKEALKHL 195


>gi|327475180|gb|AEA77185.1| holliday junction DNA helicase [Bacillus sp. 15.4]
          Length = 202

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 100/205 (48%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G ++ +  +YV+++  G+ Y I+     L    +     T++   H+R+D + L
Sbjct: 1   MYEYINGTVKRVGPEYVVLENGGIGYQIFTSNPFLFSKYE-NQEKTIYTYQHVREDILAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  ++  F+ L +V G+G + A+ +L+     +++ +I  ++ + + + PG+  K 
Sbjct: 60  YGFLSMEEKLLFIKLLNVSGIGPKGALAILASGAPEQVITAIEGEDERFLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   +      ++    K++  + +       A  AL  LGY + +    
Sbjct: 120 ARQMILDLKGKLQDVVPDYFPNLFNEGKQE-TVSNNDELIDEAALALKALGYSEREIKRV 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +  + K      ++I+ AL+ +
Sbjct: 179 TPKLSSQGK---TTDELIKDALKLL 200


>gi|52081253|ref|YP_080044.1| Holliday junction DNA helicase RuvA [Bacillus licheniformis ATCC
           14580]
 gi|52786633|ref|YP_092462.1| Holliday junction DNA helicase RuvA [Bacillus licheniformis ATCC
           14580]
 gi|319644780|ref|ZP_07999013.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus sp.
           BT1B_CT2]
 gi|81384931|sp|Q65GP5|RUVA_BACLD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|52004464|gb|AAU24406.1| Holliday junction DNA helicase [Bacillus licheniformis ATCC 14580]
 gi|52349135|gb|AAU41769.1| RuvA [Bacillus licheniformis ATCC 14580]
 gi|317392589|gb|EFV73383.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus sp.
           BT1B_CT2]
          Length = 201

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 97/205 (47%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG I+ +   Y++I+  G+ Y I+ P   +    K     T++   ++R+D   L
Sbjct: 1   MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPNPFIY---KKNSKETIYTYHYVREDTNAL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++  F  + +V G+G + A+ +L+      ++E+I  ++   + + PG+  K 
Sbjct: 58  YGFSTREEKMLFTKMLNVTGIGPKGALAILASGDPGAVIEAIENEDEAFLVKFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK       +  D+    + +  I    +    A+ AL  LGY   +    
Sbjct: 118 ARQIILDLKGKLADAVPEIAADLFNHEERE-QIHEAATALEEALEALRALGYSDREIKKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              + K+E       Q ++ AL+ +
Sbjct: 177 QPHLKKEE--ALSTDQYVKKALQKL 199


>gi|89053456|ref|YP_508907.1| Holliday junction DNA helicase RuvA [Jannaschia sp. CCS1]
 gi|123094354|sp|Q28TT0|RUVA_JANSC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|88863005|gb|ABD53882.1| Holliday junction DNA helicase RuvA [Jannaschia sp. CCS1]
          Length = 223

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 117/223 (52%), Gaps = 20/223 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++    D+ LIDV GV Y+++C  RTL+ L   G+   L+ +  +R+D ++L
Sbjct: 1   MIGKLTGRLDYKGSDHALIDVGGVGYVVHCSDRTLAALPARGEVVALYTDLLVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLS  +++W  LL SVQGVGA+ +M +L  +       +I L ++  I   PG+  K+
Sbjct: 61  FGFLSPYEKEWHRLLTSVQGVGAKASMAILGTLGVEGAARAITLGDATAIKAAPGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC-----------------SMPSFAINA 163
           A R++ ELK KA ++ ++       ++     +                     +    A
Sbjct: 121 AQRVVMELKDKAPAVMAMGGTLDDAMDDVVDDMPGESAAPAPAPQPRAPKRPASNAQAEA 180

Query: 164 ISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           +SAL NLGYG   A     +V +  ++ ++  ++IR ALR ++
Sbjct: 181 LSALQNLGYGPSDAA---QAVAQAAESASNTPELIRAALRLLA 220


>gi|304407532|ref|ZP_07389184.1| Holliday junction DNA helicase RuvA [Paenibacillus curdlanolyticus
           YK9]
 gi|304343483|gb|EFM09325.1| Holliday junction DNA helicase RuvA [Paenibacillus curdlanolyticus
           YK9]
          Length = 210

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 53/209 (25%), Positives = 97/209 (46%), Gaps = 6/209 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +     +Y+++DV+ V Y ++ P        +  +  T+++  H+R+D I+L
Sbjct: 1   MIDFLKGPVAHWETEYIVLDVRDVGYRVFTPNP--YGFARSNEPVTVYIHHHVREDAIQL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  ++  F  L  V G+G RVA+GVL+      +V +I  +N   + ++PGI  K 
Sbjct: 59  FGFATREEQTMFRKLLDVSGIGPRVALGVLAGSRPEAIVAAIQQENVTFLTKLPGIGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC----SMPSFAINAISALVNLGYGQDQ 176
           A R++ +LK K  +       D S  +  +        ++      A  AL  LGY   +
Sbjct: 119 AQRMILDLKDKLGNAPLAFGADPSVWDTNEGKGTTGEQAIAGAWPEAREALGALGYTAAE 178

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
              A   +            +++ AL+ +
Sbjct: 179 LDKAFEGLRASITAEESVDSLMKRALQQL 207


>gi|253681607|ref|ZP_04862404.1| holliday junction DNA helicase RuvA [Clostridium botulinum D str.
           1873]
 gi|253561319|gb|EES90771.1| holliday junction DNA helicase RuvA [Clostridium botulinum D str.
           1873]
          Length = 197

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 108/205 (52%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG    L +DY++++   + Y IY    T+S +  I +   +++E  +R+D + +
Sbjct: 1   MFEYIKGIYISLNKDYIVVESNNIGYKIYTSGNTMSNMPNINEEVKIYIEQIVREDFMGI 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL++ +R  F LL ++ GVG++ A+ +LS    + L +SI+ ++ K++ + PGI  KI
Sbjct: 61  YGFLTEEERAMFNLLLTINGVGSKAALSLLSISNVSNLKKSILSEDYKMLTKAPGIGKKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  ELK K   +     +D+  ++K              ++ AL+ LG+ Q +A  A
Sbjct: 121 AQRITLELKDKIEKIYEDNLEDIDNLSKNSTRK------YDESLEALIALGFSQKEAEKA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  V           +II+ +LR +
Sbjct: 175 LKDV----DMSKGIEEIIKNSLRYL 195


>gi|299769122|ref|YP_003731148.1| Holliday junction DNA helicase RuvA [Acinetobacter sp. DR1]
 gi|298699210|gb|ADI89775.1| Holliday junction DNA helicase RuvA [Acinetobacter sp. DR1]
          Length = 199

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  L    VL++V GV Y I  P+ T   L K G   TL+    +R+D  +L
Sbjct: 1   MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++  F  L  V GVG ++A+G+LS ++   LV +I   +   + ++PG+  K 
Sbjct: 60  YGFSDAQEKIIFRTLLKVNGVGPKMALGILSTLSVELLVHTIEHDDINTLIKVPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+M EL+ +  +L+    Q  S          +  S    A +AL +LGY   +A  A
Sbjct: 120 AERLMIELRDRFKTLA----QGTSSTTTLPQIQFAANSPVAEAEAALQSLGYKPLEAQKA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +V       AD   IIR AL+++
Sbjct: 176 VAAVKADYTESAD---IIRAALKSM 197


>gi|169795065|ref|YP_001712858.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii AYE]
 gi|213158273|ref|YP_002320324.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii
           AB0057]
 gi|215482614|ref|YP_002324806.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii
           AB307-0294]
 gi|239501033|ref|ZP_04660343.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii AB900]
 gi|260556549|ref|ZP_05828767.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii ATCC
           19606]
 gi|301344817|ref|ZP_07225558.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii AB056]
 gi|301510228|ref|ZP_07235465.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii AB058]
 gi|301595121|ref|ZP_07240129.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii AB059]
 gi|332851087|ref|ZP_08433196.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii
           6013150]
 gi|332869664|ref|ZP_08438852.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii
           6013113]
 gi|226698802|sp|A3M7W0|RUVA_ACIBT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226725429|sp|B7GYB6|RUVA_ACIB3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226725430|sp|B7I5A8|RUVA_ACIB5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229470533|sp|B0VDI6|RUVA_ACIBY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|169147992|emb|CAM85855.1| holliday junction helicase subunit A [Acinetobacter baumannii AYE]
 gi|193078070|gb|ABO13004.2| holliday junction helicase subunit A [Acinetobacter baumannii ATCC
           17978]
 gi|213057433|gb|ACJ42335.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii
           AB0057]
 gi|213986860|gb|ACJ57159.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii
           AB307-0294]
 gi|260409808|gb|EEX03108.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii ATCC
           19606]
 gi|332730251|gb|EGJ61576.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii
           6013150]
 gi|332732566|gb|EGJ63799.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii
           6013113]
          Length = 199

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 102/205 (49%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  L    VL++V GV Y I  P+ T   L K G   TL+    +R+D  +L
Sbjct: 1   MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++  F  L  V GVG ++A+G+LS ++   LV +I   +   + ++PG+  K 
Sbjct: 60  YGFSDAQEKTIFRTLLKVNGVGPKMALGILSTLSVELLVHTIEHDDVNTLVKVPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+M EL+ +  +L+    Q  S             S    A +AL +LGY   +A  A
Sbjct: 120 AERLMIELRDRFKTLA----QGTSSAAALPQIQFVSNSPVAEAEAALQSLGYKPLEAQKA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +V       AD   IIR AL+++
Sbjct: 176 VAAVKADYTESAD---IIRAALKSM 197


>gi|328957015|ref|YP_004374401.1| Holliday junction ATP-dependent DNA helicase RuvA [Carnobacterium
           sp. 17-4]
 gi|328673339|gb|AEB29385.1| Holliday junction ATP-dependent DNA helicase RuvA [Carnobacterium
           sp. 17-4]
          Length = 210

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 100/205 (48%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ Y ++          K+ +  T++V   +R+D I L
Sbjct: 7   MYEYIKGIVTFVSPAYIVLETNGIGYQLFI-ANPFRFSSKLNEEITIYVHQAVREDAITL 65

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++Q ++ L SV G+G +  + +L+      LV++I  +++  + + PG+  K 
Sbjct: 66  YGFKDYTEKQLYLKLLSVSGIGPKSGLAILANDNHQGLVQAIENEDAAYLTKFPGVGKKT 125

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK   L +V   + +   +++  + +  +    A+ AL  LGY   +    
Sbjct: 126 ASQIVLDLKGKLADL-TVAPLENAADYQQELVLSTNYNHVTEAMEALEALGYSAKEIKKI 184

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              + K  K        +R ALR +
Sbjct: 185 EPQIRKLNKE--STDAYLREALRLL 207


>gi|238926806|ref|ZP_04658566.1| crossover junction endodeoxyribonuclease [Selenomonas flueggei ATCC
           43531]
 gi|238885338|gb|EEQ48976.1| crossover junction endodeoxyribonuclease [Selenomonas flueggei ATCC
           43531]
          Length = 199

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 97/205 (47%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG +KG    +  DY L+DV  V Y ++   +T + +        L++ T++R+D I L
Sbjct: 1   MIGFLKGKATHITSDYCLLDVHDVGYRVFISDQTRAHI-SPNAEVMLYIHTNVREDAILL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +   F+LL  + G+G +VA G+LS  T  +    +  ++ K I ++PGI  K 
Sbjct: 60  YGFFSREEYDLFLLLIGISGIGPKVAQGILSSATVNDFYCMVQQKDVKGITKLPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K     S V  +                    A  AL+ LG+   +    
Sbjct: 120 AERILLELKDKL----SDVSVEDLPEGDNNVGAEIENGMVAEATEALLTLGFQDSEIQR- 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              V +++ +  +  ++IR AL  +
Sbjct: 175 ---VFRQKHSCQNTEELIRYALSEL 196


>gi|257055537|ref|YP_003133369.1| Holliday junction DNA helicase subunit RuvA [Saccharomonospora
           viridis DSM 43017]
 gi|256585409|gb|ACU96542.1| Holliday junction DNA helicase subunit RuvA [Saccharomonospora
           viridis DSM 43017]
          Length = 199

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 98/205 (47%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  +  D+ +I+V GV + +     TL  L + G    L+    +R+D + L
Sbjct: 1   MISSIRGEVLAVGLDHAVIEVGGVGFTVQATPTTLGTL-RRGTEARLYTTLMVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF     R+ F LLQ+V G+G R+AM  L+ +   +L  ++   +   + Q+PGI  K 
Sbjct: 60  FGFADVESRELFGLLQTVSGIGPRLAMAALAVLEPEKLRRALADGDITTLTQVPGIGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K           M              +   + ++ALV LG+   QA  A
Sbjct: 120 AERLIIELRDKV-------SAPMGGEPAPDEGTTVGSAVRADVVAALVGLGFSAKQAEQA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V  +  N  D SQ++R AL  +
Sbjct: 173 VDKVSGEVPN--DTSQVLRAALATL 195


>gi|323341472|ref|ZP_08081713.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           ruminis ATCC 25644]
 gi|323091083|gb|EFZ33714.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           ruminis ATCC 25644]
          Length = 203

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 91/205 (44%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G I  ++  Y++++  G+ Y+I                  +++   +R+++I L
Sbjct: 1   MYEYLIGTITQVFPAYIVVENNGIGYLINV-ANPFRFKSDETKQEKIYLHQIVRENEIVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++Q F+ L SV G+G + A+ +L+       V ++   +   + + PGI  K 
Sbjct: 60  YGFSDFNEKQLFLKLISVSGIGPKSALAILANEDHNGFVSAVNNDDDAYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   L S   + +      +        +   A+ AL+ LGY + +    
Sbjct: 120 AKQIILDLKGKLGGLES--GKPLKGQQDLEIVAEQTSPYLKEALEALLALGYTKTEVKKT 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +L  +       + +R ALR +
Sbjct: 178 GRKLL--DFKGDSTDEYLRQALRLM 200


>gi|169632720|ref|YP_001706456.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii SDF]
 gi|229470531|sp|B0VT90|RUVA_ACIBS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|169151512|emb|CAP00277.1| holliday junction helicase subunit A [Acinetobacter baumannii]
          Length = 199

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 102/205 (49%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  L    VL++V GV Y I  P+ T   L K G   TL+    +R+D  +L
Sbjct: 1   MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVIREDAQQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++  F  L  V GVG ++A+G+LS ++   LV +I   +   + ++PG+  K 
Sbjct: 60  YGFSDAQEKTIFRTLLKVNGVGPKMALGILSTLSVELLVHTIEHDDVNTLVKVPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+M EL+ +  +L+    Q  S             S    A +AL +LGY   +A  A
Sbjct: 120 AERLMIELRDRFKTLA----QGTSSAAALPQIQFVSNSPVAEAEAALQSLGYKPLEAQKA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +V       AD   IIR AL+++
Sbjct: 176 VAAVKADYTESAD---IIRAALKSM 197


>gi|184159149|ref|YP_001847488.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii ACICU]
 gi|332875977|ref|ZP_08443763.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii
           6014059]
 gi|229470530|sp|B2HWT2|RUVA_ACIBC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|183210743|gb|ACC58141.1| Holliday junction resolvasome, DNA-binding subunit [Acinetobacter
           baumannii ACICU]
 gi|322509062|gb|ADX04516.1| ruvA [Acinetobacter baumannii 1656-2]
 gi|323519043|gb|ADX93424.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332735843|gb|EGJ66884.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii
           6014059]
          Length = 199

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 101/205 (49%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  L    VL++V GV Y I  P+ T   L K G   TL+    +R+D  +L
Sbjct: 1   MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++  F  L  V GVG ++A+G+LS +    LV +I   +   + ++PG+  K 
Sbjct: 60  YGFSDAQEKTIFRTLLKVNGVGPKMALGILSTLNVELLVHTIEHDDVNTLVKVPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+M EL+ +  +L+    Q  S             S    A +AL +LGY   +A  A
Sbjct: 120 AERLMIELRDRFKTLA----QGTSSAAALPQIQFVSNSPVAEAEAALQSLGYKPLEAQKA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +V       AD   IIR AL+++
Sbjct: 176 VAAVKADYTESAD---IIRAALKSM 197


>gi|296331680|ref|ZP_06874149.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675361|ref|YP_003867033.1| Holliday junction DNA helicase [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296151275|gb|EFG92155.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413605|gb|ADM38724.1| Holliday junction DNA helicase [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 201

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 99/205 (48%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG I+ +   Y++I+  G+ Y I+ P   +    K  +  T+F   H+R+D   L
Sbjct: 1   MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPNPFIY---KERNQETIFTYHHIREDAFSL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++  F  L +V G+G + A+ +L       ++++I  ++   + + PG+  K 
Sbjct: 58  YGFSTREEKALFTKLLNVTGIGPKGALAILGSGDPGAVIQAIENEDEAFLVKFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   +   + +++    +      +  +    A+ AL  LGY + +    
Sbjct: 118 ARQIILDLKGKLADVVPEMIENLFNHEERLEKQTAE-TALEEALEALRVLGYAEKEIKKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +  KE       Q ++ AL+ +
Sbjct: 177 LPHL--KEDTGLTTDQYVKKALQKL 199


>gi|229918406|ref|YP_002887052.1| Holliday junction DNA helicase RuvA [Exiguobacterium sp. AT1b]
 gi|259495643|sp|C4L522|RUVA_EXISA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229469835|gb|ACQ71607.1| Holliday junction DNA helicase RuvA [Exiguobacterium sp. AT1b]
          Length = 195

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +  +  +Y+ +DV GV Y ++ P        +  +   +F   ++R+DQ  L
Sbjct: 1   MIEFVKGPVAYVCAEYITLDVSGVGYKVHVPNPFFYR--EQDEHVIVFTHHYVREDQQTL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R+ F  L SV G+G + A+ +++      L+++I  +N K + + PG+  K 
Sbjct: 59  YGFRSRRERELFNKLLSVSGIGPKGALAIVASGDIDALIDAIETENEKYLTKFPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A ++  +LKGK   L+     +               S    A  ALV LGY + +    
Sbjct: 119 AKQMALDLKGKLSELAPDYVPNEGLF-------AQGASELDEACEALVALGYSEREIAK- 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V   L     I      I+ AL+ +
Sbjct: 171 VRKALS--GEILTTDAYIKRALQLL 193


>gi|56751811|ref|YP_172512.1| Holliday junction DNA helicase RuvA [Synechococcus elongatus PCC
           6301]
 gi|81301107|ref|YP_401315.1| Holliday junction DNA helicase RuvA [Synechococcus elongatus PCC
           7942]
 gi|81561725|sp|Q5N128|RUVA_SYNP6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|123769196|sp|Q31KU1|RUVA_SYNE7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|56686770|dbj|BAD79992.1| holliday junction DNA helicase RuvA [Synechococcus elongatus PCC
           6301]
 gi|81169988|gb|ABB58328.1| Holliday junction DNA helicase subunit RuvA [Synechococcus
           elongatus PCC 7942]
          Length = 207

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 57/212 (26%), Positives = 104/212 (49%), Gaps = 12/212 (5%)

Query: 1   MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG ++G++ G+ +      +L+DVQGV Y +  P R+L  L   G    +F    +R+D
Sbjct: 1   MIGYLQGSLAGVRKQSGRLLLLLDVQGVGYEVQTPARSLVELPAAGQSLQVFTHLQVRED 60

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
           Q  LFGFL   +R  F  L SV G+G ++ + +L  ++  ELV++I+  N++++++ PG+
Sbjct: 61  QWLLFGFLQMAERDLFRQLISVSGIGPQLGLALLDSLSLAELVQAIVAGNTRLLSRTPGV 120

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             K A R+  EL+ K            S           + +   +    L+ LGY   +
Sbjct: 121 GAKTAERLALELRSKLAEWREEAGLLPSAT------AAPIAAVQEDVEMTLLALGYNNRE 174

Query: 177 ATTAVVSVLKKE--KNIADDSQIIRLALRAIS 206
              A+ ++ ++   ++       IR A+  +S
Sbjct: 175 ILQALTAIAQENLVQSGQPAEDWIREAIAWLS 206


>gi|37522453|ref|NP_925830.1| Holliday junction DNA helicase RuvA [Gloeobacter violaceus PCC
           7421]
 gi|44888383|sp|Q7NCU2|RUVA_GLOVI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|35213454|dbj|BAC90825.1| holliday junction DNA helicase [Gloeobacter violaceus PCC 7421]
          Length = 206

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 11/210 (5%)

Query: 1   MIGKIKGNIEGLYE----DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MI  ++G +  +       +  +DV GV Y ++   RT+  L +IG+   LF    +R+D
Sbjct: 1   MITFVRGMLAEVGPRSGQSWATVDVGGVGYRVWTHARTVGKLPRIGEEVKLFTLMIVRED 60

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
            ++LFGFL   +R+ F  L SV G+G R+ + +L  +  TELV++I+  N++ +A  PG+
Sbjct: 61  AMQLFGFLEPGERELFGQLVSVSGIGPRMGLALLETLAPTELVQAILQGNTRALALAPGV 120

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             K A R+  EL+ +                       +          AL+ LG+   +
Sbjct: 121 GAKTAQRLALELRSRLSKWREESGLS-------AMGARASSRVYEEVELALLALGFAPGE 173

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
              A+ +V             +R A+  +S
Sbjct: 174 VVRALDAVAPAMAGEEQTEAWLRAAIAWLS 203


>gi|319442165|ref|ZP_07991321.1| Holliday junction DNA helicase RuvA [Corynebacterium variabile DSM
           44702]
          Length = 214

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 58/211 (27%), Positives = 104/211 (49%), Gaps = 7/211 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     D+V+I+  GV Y+     RTL+ L + G+   +     +R+D   L
Sbjct: 1   MIASLRGAVVDKGLDHVVIECAGVGYLCQATARTLADLPR-GEEVFVLTTMVVREDSQTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           + F     R+ F L+QSV GVGAR+AM +LS +T  E+  ++   + K + + PG+  ++
Sbjct: 60  YAFPDVASRELFALVQSVSGVGARMAMALLSVLTPAEIAAAVAEGDVKTLQRAPGVGKRL 119

Query: 121 ASRIMTELKGKAI--SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R+  +LKGK    +++         V+          +     + ALV LG+ +  A 
Sbjct: 120 ADRMSVDLKGKLDAYAVAQPSGAPGDAVDLTSGDAAVDDAVTAQVVEALVGLGFPEASAA 179

Query: 179 TAVVSVLKK----EKNIADDSQIIRLALRAI 205
             V S++ +    + +  D S ++R AL  +
Sbjct: 180 DTVTSLVAETGGGDGSSPDASVLLRSALSRL 210


>gi|119356229|ref|YP_910873.1| Holliday junction DNA helicase RuvA [Chlorobium phaeobacteroides
           DSM 266]
 gi|166230538|sp|A1BDH2|RUVA_CHLPD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|119353578|gb|ABL64449.1| Holliday junction DNA helicase subunit RuvA [Chlorobium
           phaeobacteroides DSM 266]
          Length = 200

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 96/202 (47%), Gaps = 8/202 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG++     +  +IDV GV Y +     T   L   G    L+    +R+D ++L
Sbjct: 1   MFAYFKGSLVTALPEEAVIDVSGVAYRMLISATTFRQLPDEGSQVLLYAHLSVREDALQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + +RQ F LL    GVG ++A+ VLS +   E+ E+I+    + +  + G+  K 
Sbjct: 61  YGFFKEEERQLFRLLLLTSGVGPKLALAVLSGLQVPEVHEAIMANEPERLYGVSGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ EL+ K + L  V                       +A+ ALV LG+ +  A  A
Sbjct: 121 AARIILELRDKILKLPLVTPAAGKAAM-------PSHHVKDDAVHALVTLGFSRLLAQKA 173

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           V ++L+++       ++I+ AL
Sbjct: 174 VSALLEEKPE-QSVEEVIKYAL 194


>gi|297198358|ref|ZP_06915755.1| Holliday junction DNA helicase RuvA [Streptomyces sviceus ATCC
           29083]
 gi|197714415|gb|EDY58449.1| Holliday junction DNA helicase RuvA [Streptomyces sviceus ATCC
           29083]
          Length = 201

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 56/209 (26%), Positives = 96/209 (45%), Gaps = 14/209 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G I  L  D  +++V GV   + C   TLS L ++G    L     +R+D + L
Sbjct: 1   MIAFVSGTIAALAPDTAVVEVGGVGMAVQCTPNTLSTL-RLGQPAKLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+ D +RQ F LLQ+  GVG R+A  +L+      L  ++   + K +  +PGI  K 
Sbjct: 60  YGFVDDDERQIFELLQTASGVGPRLAQAMLAVHAPDALRRAVATGDEKALIAVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK +              +            +     +AL+ LGY   +A  A
Sbjct: 120 AQKLLLELKDRLGE----------PIGAPAIGAPVTQGWRDQLHAALIGLGYATREADEA 169

Query: 181 VVSV---LKKEKNIADDSQIIRLALRAIS 206
           V +V    +  +      Q+++ AL+ ++
Sbjct: 170 VTAVTPQAEASEGTPQVGQLLKAALQTLN 198


>gi|300858594|ref|YP_003783577.1| holliday junction resolvasome helicase subunit A [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686048|gb|ADK28970.1| Holliday junction resolvasome helicase subunit A [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206306|gb|ADL10648.1| Holliday junction ATP-dependent DNA helicase ruvA [Corynebacterium
           pseudotuberculosis C231]
 gi|302330863|gb|ADL21057.1| Holliday junction ATP-dependent DNA helicase ruvA [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276548|gb|ADO26447.1| Holliday junction ATP-dependent DNA helicase ruvA [Corynebacterium
           pseudotuberculosis I19]
          Length = 203

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 105/205 (51%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +     +I+  GV Y +     TLS + + G+   +     +R+D   L
Sbjct: 1   MIVSLRGTVASIGLGSAVIECNGVGYEVLASPSTLSQM-RRGEEFFVLTTMVVREDSQTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF SD  RQ F LLQ+V G+G ++A+   S ++A +L ++I  Q++K + +IPG+  ++
Sbjct: 60  YGFASDEARQMFTLLQTVSGLGPKLALAAQSVLSAVDLAQAIANQDAKTLQRIPGVGKRV 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K  +       D            +    +   + AL+ LG+ +  A  A
Sbjct: 120 AERIIVDLKDKVSAFI----TDGGATPASGGSSSATSDVSAQVLEALLGLGFTEKVAEPA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + SVL +  N A  SQ +RLAL  +
Sbjct: 176 LNSVLSESPN-ATTSQALRLALSTL 199


>gi|21220019|ref|NP_625798.1| Holliday junction DNA helicase RuvA [Streptomyces coelicolor A3(2)]
 gi|20455268|sp|Q9L290|RUVA_STRCO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|6822215|emb|CAB70921.1| holliday junction DNA helicase [Streptomyces coelicolor A3(2)]
          Length = 201

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 56/209 (26%), Positives = 95/209 (45%), Gaps = 14/209 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L  D  +I+V GV   + C   TLS L ++G    L     +R+D + L
Sbjct: 1   MIAFVSGTVAALAPDAAVIEVGGVGMAVQCTPNTLSTL-RLGKPAKLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+      L  ++   + K +  +PGI  K 
Sbjct: 60  YGFADDDERQVFELLQTASGVGPRLAQAMLAVHQPDALRRAVATGDEKALTAVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK +              +            +     +AL+ LGY   +A  A
Sbjct: 120 AQKLLLELKDRLGE----------PIGAPAVGAPVSTGWRDQLHAALIGLGYATREADEA 169

Query: 181 VVSVLKKEKNIADDSQ---IIRLALRAIS 206
           V +V  + +      Q   +++ AL+ ++
Sbjct: 170 VSAVAPQAEAAGGTPQVGALLKAALQTLN 198


>gi|262278158|ref|ZP_06055943.1| Holliday junction helicase subunit A [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258509|gb|EEY77242.1| Holliday junction helicase subunit A [Acinetobacter calcoaceticus
           RUH2202]
          Length = 199

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  L    VL++V GV Y I  P+ T   L K G   TL+    +R+D  +L
Sbjct: 1   MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++  F  L  V GVG ++A+G+LS ++   LV +I   +   + ++PG+  K 
Sbjct: 60  YGFSDAQEKIIFRTLLKVNGVGPKMALGILSTLSVELLVHTIEHDDINTLIKVPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+M EL+ +  +L+    Q  S          +  S    A +AL +LGY   +A  A
Sbjct: 120 AERLMIELRDRFKTLA----QGTSSTTTLSQIQFAANSPVAEAEAALQSLGYKPLEAQKA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +V       AD   IIR AL+++
Sbjct: 176 VAAVKADYTESAD---IIRAALKSM 197


>gi|15613787|ref|NP_242090.1| Holliday junction DNA helicase RuvA [Bacillus halodurans C-125]
 gi|20140284|sp|Q9KDI9|RUVA_BACHD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|10173840|dbj|BAB04943.1| holliday junction DNA helicase [Bacillus halodurans C-125]
          Length = 203

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 92/205 (44%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +   Y +++V GV Y +YCP        +     T++   ++R+D IRL
Sbjct: 1   MIDYLRGTLTDIDHQYAVVEVHGVGYQVYCP-NPYEFEKERDSVITIYTFQYVREDVIRL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +   R  F  L +V G+G + A+ +L+      ++++I  ++   + + PG+  K 
Sbjct: 60  YGFRTKEKRSLFEKLLNVSGIGPKGALAILATGQPEHVIQAIEEEDEAFLVKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   L   +         +             A+ AL  LGY + +    
Sbjct: 120 ARQIILDLKGKVDELHPGLFS-QKEEQPKPHEKNDGNQALDEAMEALKALGYVEKELKKV 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +   E+        I+ AL+ +
Sbjct: 179 KPKL---EQETLTTDAYIKKALQLM 200


>gi|148543762|ref|YP_001271132.1| Holliday junction DNA helicase RuvA [Lactobacillus reuteri DSM
           20016]
 gi|184153168|ref|YP_001841509.1| Holliday junction DNA helicase RuvA [Lactobacillus reuteri JCM
           1112]
 gi|227363258|ref|ZP_03847390.1| crossover junction endoribonuclease subunit A [Lactobacillus
           reuteri MM2-3]
 gi|325682134|ref|ZP_08161652.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           reuteri MM4-1A]
 gi|167012661|sp|A5VIX1|RUVA_LACRD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560094|sp|B2G6E7|RUVA_LACRJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|148530796|gb|ABQ82795.1| Holliday junction DNA helicase subunit RuvA [Lactobacillus reuteri
           DSM 20016]
 gi|183224512|dbj|BAG25029.1| holliday junction DNA helicase RuvA [Lactobacillus reuteri JCM
           1112]
 gi|227071714|gb|EEI10005.1| crossover junction endoribonuclease subunit A [Lactobacillus
           reuteri MM2-3]
 gi|324978778|gb|EGC15727.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           reuteri MM4-1A]
          Length = 199

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 50/206 (24%), Positives = 93/206 (45%), Gaps = 7/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +  +   Y+++DV GV Y +                  ++V   +R+D I L
Sbjct: 1   MYEYLTGLVTVVAPQYIVVDVNGVGYKLLV-ANPYRYQEDRTKKVQVYVYQAVREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    ++  FM L +V G+G + A+ +L+      LV++I   N   + + PGI  K 
Sbjct: 60  FGFTDQNEKNLFMQLINVSGIGPKSALAILANPDHQGLVDAITNNNVSYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +L+ K  +              +     ++     +A+ AL  LGY +      
Sbjct: 120 ASQIVLDLRDKLTN----ESSSSLFATTQLTVDATVNRELKDALEALAALGYKERDIKKV 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
             +++K+E+   D  + +R ALR ++
Sbjct: 176 QKALMKEEQMATD--EYLRQALRLLN 199


>gi|311069260|ref|YP_003974183.1| Holliday junction DNA helicase RuvA [Bacillus atrophaeus 1942]
 gi|310869777|gb|ADP33252.1| Holliday junction DNA helicase RuvA [Bacillus atrophaeus 1942]
          Length = 201

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 102/205 (49%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG I+ +   Y++I+  G+ Y I+ P   +    K  +  T+F   H+R+D   L
Sbjct: 1   MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPNPFIY---KERNQETIFTYHHIREDAFSL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++  F  L +V G+G + A+ +L+      ++E+I  ++   + + PG+  K 
Sbjct: 58  YGFSTREEKALFTKLLNVTGIGPKGALAILASGDPGAVIEAIEQEDEAFLVKFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   +   + +++   ++++       +    A+ AL  LGY + +    
Sbjct: 118 ARQIILDLKGKLADVVPEMIENLFN-HEDRIEKHKAETALDEALEALRVLGYAEKEIKKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +  KE       Q ++ AL+ +
Sbjct: 177 LPHL--KEDTTLTTDQYVKKALQKL 199


>gi|121610984|ref|YP_998791.1| Holliday junction DNA helicase RuvA [Verminephrobacter eiseniae
           EF01-2]
 gi|166231456|sp|A1WQ66|RUVA_VEREI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|121555624|gb|ABM59773.1| Holliday junction DNA helicase RuvA [Verminephrobacter eiseniae
           EF01-2]
          Length = 191

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 99/205 (48%), Gaps = 16/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +       VL+D  GV Y +  P+ +   L  +G+  +L  +  +R+D   L
Sbjct: 1   MIGKLTGTLLEKNPPEVLLDCHGVGYEVNVPMSSFYNLPAVGERISLLTQFIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +RQ F  L  + GVG R+A+ +LS ++  +L ++I  Q +  + ++PG+  + 
Sbjct: 61  YGFATAPERQAFRALIKITGVGPRMALSILSGMSVADLAQAIARQEAARLVKVPGVGKRT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R              +  +     +   +H  ++     + + AL+ LGY   +A  A
Sbjct: 121 AER------------LLLELKGKLGADLGASHGPAVSGAQADILQALLALGYNDKEAAAA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++  +     + S  I+ AL+A+
Sbjct: 169 LKALPAQ----VEVSDGIKWALKAL 189


>gi|296113247|ref|YP_003627185.1| holliday junction DNA helicase RuvA [Moraxella catarrhalis RH4]
 gi|295920941|gb|ADG61292.1| holliday junction DNA helicase RuvA [Moraxella catarrhalis RH4]
          Length = 204

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 65/207 (31%), Positives = 102/207 (49%), Gaps = 6/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYV-LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG I G ++ L      ++   GV Y I  PI +   L  IG    ++V  H+R+D I 
Sbjct: 1   MIGMISGRVQYLNAPIACILTSNGVGYEIELPIPSFCQL-TIGAQTAVYVHHHVREDAIN 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF+   DR  F  L  + GVGA++A+ +LS ++  E+  +I       + ++PGI  K
Sbjct: 60  LFGFMDRHDRDIFRKLIKINGVGAKMALAMLSTLSVAEIKHAIETDYDAALVRVPGIGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ +LKGK      +    M+          +         SAL+NLGY + +A  
Sbjct: 120 TAQRILLDLKGKLNEFGEM--HPMTAEGLFNQPADNSMLIIAEVESALMNLGYKEKEAQV 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           A+ +     KN  + S +++ ALR +S
Sbjct: 178 AIKNAQSDAKN--NTSDLLKAALRQLS 202


>gi|327475178|gb|AEA77184.1| holliday junction DNA helicase [Bacillus aquimaris]
          Length = 203

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 92/205 (44%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG I  +  +YV+++  G+ Y +Y                 +F   H+R+D I L
Sbjct: 1   MYEYIKGTISQVSPEYVVVENNGIGYQLY-TANPFVYSKYHNQEIQIFTYQHVREDIIAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  ++  FM L +V G+G + A+ +L+     +++ +I  +N   + + PG+  K 
Sbjct: 60  YGFLSLEEKLLFMKLLNVSGIGPKGALAILASGAPQQVITAIEEENESFLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   +       +   N E   +         AI AL  LGY   +    
Sbjct: 120 ARQMILDLKGKLQDVVPDYFPSLFNHNDETEALSDKDEAFDEAILALKALGYSDREIKKI 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +   +       +IIR AL+ +
Sbjct: 180 TPKL---KGEGHSADEIIRKALQLL 201


>gi|255658187|ref|ZP_05403596.1| holliday junction DNA helicase RuvA [Mitsuokella multacida DSM
           20544]
 gi|260849495|gb|EEX69502.1| holliday junction DNA helicase RuvA [Mitsuokella multacida DSM
           20544]
          Length = 199

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 108/206 (52%), Gaps = 9/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  LY DY L+DV GV Y ++    T + L ++ +  +LF  T +R+D I L
Sbjct: 1   MIGYLHGRVIALYTDYCLLDVHGVGYRVFLANSTRAKL-RLKEEASLFTYTSVREDAIVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ + + F+ L  V G+G +VA+G+LS IT   L  +I  + + V+ ++PGI  K 
Sbjct: 60  YGFATEEEYELFLQLIGVSGIGPKVALGILSAITVESLCRAIQNKQASVLTKLPGIGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K     S  ++ ++  N               A++AL +LGY Q +    
Sbjct: 120 AERLILELKDKVAFADSGEEELLTIEN----EAEVGDDAVAEAMAALQSLGYTQAEIAPV 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +    K          II+ +L+A+S
Sbjct: 176 IRKTAK----YKTTEAIIKESLKALS 197


>gi|154686915|ref|YP_001422076.1| Holliday junction DNA helicase RuvA [Bacillus amyloliquefaciens
           FZB42]
 gi|308174476|ref|YP_003921181.1| Holliday junction DNA helicase [Bacillus amyloliquefaciens DSM 7]
 gi|166230516|sp|A7Z769|RUVA_BACA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|154352766|gb|ABS74845.1| RuvA [Bacillus amyloliquefaciens FZB42]
 gi|307607340|emb|CBI43711.1| Holliday junction DNA helicase [Bacillus amyloliquefaciens DSM 7]
 gi|328554396|gb|AEB24888.1| Holliday junction DNA helicase RuvA [Bacillus amyloliquefaciens
           TA208]
 gi|328912801|gb|AEB64397.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           amyloliquefaciens LL3]
          Length = 201

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 98/205 (47%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG I+ +   Y++I+  G+ Y ++ P   +    K+ +  T+F   H+++D   L
Sbjct: 1   MIEFVKGTIDYVSPQYIVIENGGIGYQVFTPNPFIY---KVSNQETIFTYHHIKEDAFSL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++  F  L +V G+G + A+ +L       ++E+I  ++   + + PG+  K 
Sbjct: 58  YGFSTREEKALFTKLLNVTGIGPKGALAILGSGDPGAVIEAIEQEDEAFLVKFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   +   +  ++              +    A+ AL  LGY + +    
Sbjct: 118 ARQIILDLKGKLADVVPEMIDNLFNHEAR-IEKQEAETALDEALEALRVLGYAEKEIKKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +  KE+      Q ++ AL+ +
Sbjct: 177 LPHL--KEETALSTDQYVKKALQKL 199


>gi|319651695|ref|ZP_08005822.1| Holliday junction DNA helicase motor protein [Bacillus sp.
           2_A_57_CT2]
 gi|317396762|gb|EFV77473.1| Holliday junction DNA helicase motor protein [Bacillus sp.
           2_A_57_CT2]
          Length = 203

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 93/198 (46%), Gaps = 5/198 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G ++ +  +YV+I+  G+ Y I  P    S   + G    ++   ++R+D + L
Sbjct: 1   MYEFVRGKLDFIGPEYVVIENNGIGYQILTP-NPFSYTPEFGQEVRIYTYHYVREDIMAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++  F  L +V G+G + A+ +L+     ++V++I  ++   + + PG+  K 
Sbjct: 60  YGFQTREEKTLFTKLLNVTGIGPKGALAILASGEPEQVVQAIENEDEAFLVKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   +      ++   +K QA           A+ AL  LGY   +    
Sbjct: 120 ARQMILDLKGKLPDIVPDFFPNLFSADKLQAESGPSGD-LEEALLALKALGYSDKELKKI 178

Query: 181 VVSVLKKEKNIADDSQII 198
              + K++       Q I
Sbjct: 179 TPELRKEK---LTTDQYI 193


>gi|256788881|ref|ZP_05527312.1| Holliday junction DNA helicase RuvA [Streptomyces lividans TK24]
 gi|289772769|ref|ZP_06532147.1| Holliday junction DNA helicase RuvA [Streptomyces lividans TK24]
 gi|289702968|gb|EFD70397.1| Holliday junction DNA helicase RuvA [Streptomyces lividans TK24]
          Length = 201

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 56/209 (26%), Positives = 95/209 (45%), Gaps = 14/209 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L  D  +I+V GV   + C   TLS L ++G    L     +R+D + L
Sbjct: 1   MIAFVSGTVATLAPDAAVIEVGGVGMAVQCTPNTLSTL-RLGKPAKLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+      L  ++   + K +  +PGI  K 
Sbjct: 60  YGFADDDERQVFELLQTASGVGPRLAQAMLAVHQPDALRRAVATGDEKALTAVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK +              +            +     +AL+ LGY   +A  A
Sbjct: 120 AQKLLLELKDRLGE----------PIGAPAVGAPVSTGWRDQLHAALIGLGYATREADEA 169

Query: 181 VVSVLKKEKNIADDSQ---IIRLALRAIS 206
           V +V  + +      Q   +++ AL+ ++
Sbjct: 170 VSAVAPQAEAAGGTPQVGALLKAALQTLN 198


>gi|297155806|gb|ADI05518.1| Holliday junction DNA helicase RuvA [Streptomyces bingchenggensis
           BCW-1]
          Length = 204

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 60/212 (28%), Positives = 99/212 (46%), Gaps = 17/212 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G I  +  D  +++V GV   + C   TLS L ++G    L     +R+D + L
Sbjct: 1   MIAFVSGPIAAVGPDIAVVEVGGVGMAVQCTPNTLSGL-RVGQPARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+  +   L  ++   + K +  +PGI  K 
Sbjct: 60  YGFADDDERQIFELLQTASGVGPRLAQAMLAVHSPDALRLAVATGDEKSLTAVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +              V +        P ++    +ALV LGY   +A  A
Sbjct: 120 AQRLLLELKDRLGE----------PVGRPAGPAAPAPGWSDQLHTALVGLGYAPREAEDA 169

Query: 181 VVSVLKK------EKNIADDSQIIRLALRAIS 206
           V +V  +             +Q++R AL+ ++
Sbjct: 170 VAAVTPQAEAAVAAGGSPQVAQLLRAALQTLN 201


>gi|90418966|ref|ZP_01226877.1| Holliday junction specific DNA helicase, subunit RuvA [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90337046|gb|EAS50751.1| Holliday junction specific DNA helicase, subunit RuvA [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 206

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 87/206 (42%), Positives = 134/206 (65%), Gaps = 1/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++ + ED+V++DV GV Y+ +C  RTL+ L   G+   LF++T++R+D +RL
Sbjct: 1   MIGKLKGTVDEIGEDHVVVDVHGVGYVAFCGARTLAALPGEGEAVVLFIDTYVREDMLRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++ WF LLQ VQGVGARVA+ V+  ++A +L  ++ LQ+  ++A+ PG+  K+
Sbjct: 61  YGFATRAEQDWFRLLQMVQGVGARVALAVIGTLSAGDLANAVALQDKAMVARAPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ ELK KA + S     D S   K      +  +   +A+SALVNLGY +DQA  A
Sbjct: 121 AARIVAELKDKAPAFSG-AGSDESLGLKRDIGGGTAAAPVADAVSALVNLGYPRDQAAEA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V   LK      D +++IRL L+A+S
Sbjct: 180 VAKALKDAGEAPDSAKLIRLGLKALS 205


>gi|285019190|ref|YP_003376901.1| holliday junction resolvasome, DNA-binding subunit protein
           [Xanthomonas albilineans GPE PC73]
 gi|283474408|emb|CBA16909.1| putative holliday junction resolvasome, dna-binding subunit protein
           [Xanthomonas albilineans]
          Length = 194

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 94/204 (46%), Gaps = 13/204 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +      +++IDV GV Y +  P+ T   L  +G    LF     ++D + L
Sbjct: 1   MIGRLRGILAYKQPPWLVIDVGGVGYEMEAPMSTFYDLPDVGREVILFTHYAHKEDSVAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + +R+ F  +Q V G+GA++A+ VLS ++       I   +   + +IPGI  K 
Sbjct: 61  YGFLREGERRLFRDVQRVTGIGAKIALAVLSGVSVDAFARLITAADVTALTRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +A   S                          A SAL  LGY       A
Sbjct: 121 AERMVVELRDRAADFSGGAP----------ITGQLGADAVSEATSALQQLGYKP---AEA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
                +   +  + + +IR AL++
Sbjct: 168 AKMAREAAADGDEVAMVIRKALQS 191


>gi|326560238|gb|EGE10626.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis 7169]
 gi|326566444|gb|EGE16594.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis BC1]
          Length = 204

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 65/207 (31%), Positives = 102/207 (49%), Gaps = 6/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYV-LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG I G ++ L      ++   GV Y I  PI +   L  IG    ++V  H+R+D I 
Sbjct: 1   MIGMISGQVQYLNAPIACILTSNGVGYEIELPIPSFCQL-TIGTQTAVYVHHHVREDAIN 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF+   DR  F  L  + GVGA++A+ +LS ++  E+  +I       + ++PGI  K
Sbjct: 60  LFGFMDRHDRDIFRKLIKINGVGAKMALAMLSTLSVAEIKHAIETDYDAALVRVPGIGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ +LKGK      +    M+          +         SAL+NLGY + +A  
Sbjct: 120 TAQRILLDLKGKLNEFGEM--HPMTAEGLFNQPADNSMLIVAEVESALMNLGYKEKEAQV 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           A+ +     KN  + S +++ ALR +S
Sbjct: 178 AIKNAQSDAKN--NTSDLLKAALRQLS 202


>gi|189218506|ref|YP_001939147.1| Holliday junction resolvasome, DNA-binding subunit
           [Methylacidiphilum infernorum V4]
 gi|189185364|gb|ACD82549.1| Holliday junction resolvasome, DNA-binding subunit
           [Methylacidiphilum infernorum V4]
          Length = 211

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 51/207 (24%), Positives = 99/207 (47%), Gaps = 11/207 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +      +++++V+G+ + ++C +     L  +    TL+    + ++++ L
Sbjct: 12  MISYLKGTLIYSLFPHIIVEVRGIGFEVFCSLSLFRNLPPLYSELTLYTHLEVSENRLEL 71

Query: 61  FGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           FGF    ++  F LL   V GVG R A+ +L+ +  +EL  ++   + +++++I GI  K
Sbjct: 72  FGFKDLEEQLTFRLLVEKVHGVGPRTALSILNVLPPSELKAAVGRADFRLLSKIKGIGEK 131

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ ELK    +  +      + V               +A+ ALV LGY + +A  
Sbjct: 132 TAHRLVVELKDSWATAEASSSSGTAIVGDR---------VFEDALRALVALGYKEPEALK 182

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
            +  V +K     D   II+  L+  S
Sbjct: 183 RLRRVREKHPQ-MDLEGIIKECLKLAS 208


>gi|153955759|ref|YP_001396524.1| Holliday junction DNA helicase RuvA [Clostridium kluyveri DSM 555]
 gi|219856126|ref|YP_002473248.1| hypothetical protein CKR_2783 [Clostridium kluyveri NBRC 12016]
 gi|146348617|gb|EDK35153.1| RuvA [Clostridium kluyveri DSM 555]
 gi|219569850|dbj|BAH07834.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 196

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 105/205 (51%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG  +G+ +DY++++  G+ Y I     T++   KI +  TL+++  +R+D I L
Sbjct: 1   MYEYIKGIYKGVNKDYIVVENNGIGYKINTSGSTIAKTPKIDENITLYLQQIVREDFIGL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +   F LL ++ G+GA+ A+ +LS  +   L  +II  + K + + PG+  K 
Sbjct: 61  YGFLTKEEINMFNLLLTINGIGAKAALSLLSISSVNNLKYAIISGDEKNLIRAPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K      + Q+       +     S     +  + AL+ LGY + +A  A
Sbjct: 121 AQRIILELKDKIKPEEIINQE-------KDHRQVSQEEETMEVLEALIALGYSEKEAGRA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V S+   +        +I+ AL+ +
Sbjct: 174 VASIDNND----SIESMIKNALKFL 194


>gi|182415003|ref|YP_001820069.1| Holliday junction DNA helicase RuvA [Opitutus terrae PB90-1]
 gi|229560110|sp|B1ZN17|RUVA_OPITP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|177842217|gb|ACB76469.1| Holliday junction DNA helicase RuvA [Opitutus terrae PB90-1]
          Length = 200

 Score =  148 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 56/203 (27%), Positives = 89/203 (43%), Gaps = 5/203 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +        +++V G  Y ++ P+ T   L   G    L      R+D   L
Sbjct: 1   MITSIQGTLVSATPLQAIVEVAGFGYEVHIPVTTAERLPAAGAAVKLHTLVIYREDSQTL 60

Query: 61  FGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +GF S  +R +F L+   V GVG ++A+ ++SR+    L  +I + +   +A+ PGI  K
Sbjct: 61  YGFASPAERDFFRLMIEHVTGVGPKMALSIMSRLALPSLESAIRMGDVASLAKCPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ EL+ K                +  A      S   +A++ALV LGY    A  
Sbjct: 121 TAERLVVELRTKV----GATGAAPGLATQPAAAASPGASAHRDAVAALVALGYRSADADE 176

Query: 180 AVVSVLKKEKNIADDSQIIRLAL 202
           AV          A    +I+ AL
Sbjct: 177 AVRRASLALGEAATTESLIKKAL 199


>gi|134098596|ref|YP_001104257.1| Holliday junction DNA helicase RuvA [Saccharopolyspora erythraea
           NRRL 2338]
 gi|291008207|ref|ZP_06566180.1| Holliday junction DNA helicase RuvA [Saccharopolyspora erythraea
           NRRL 2338]
 gi|166200258|sp|A4FBA7|RUVA_SACEN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|133911219|emb|CAM01332.1| Holliday junction DNA helicase [Saccharopolyspora erythraea NRRL
           2338]
          Length = 200

 Score =  148 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 100/205 (48%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +I+V GV   ++    TL+ L + G+   L+    +R+D + L
Sbjct: 1   MIASVRGPVLSVGLDHAVIEVGGVGMAVHATPATLAGL-RRGEEARLWTSLIVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F LLQ+  GVG R+A+  L+ +   +L  ++   N   + Q+PG+  K 
Sbjct: 60  YGFADAEARDLFGLLQTASGVGPRLALATLAVLAPDQLCHALSDGNITTLTQVPGVGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K  +++              A              ALV LG+   QA  +
Sbjct: 120 AERLILELRDKVGTVAGTAGA--------GAQAPDRGRVRSEVSEALVGLGFSAKQAEQS 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +VL  +  ++D S ++R AL A+
Sbjct: 172 VEAVLAADGPVSDTSAVLRKALAAL 196


>gi|327475176|gb|AEA77183.1| holliday junction DNA helicase [Exiguobacterium sp. EPVM]
          Length = 195

 Score =  148 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 94/205 (45%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG++  +  +Y+ +DV GV Y ++ P        +  +   +F   ++R+DQ  L
Sbjct: 1   MIEFVKGSVAYVCAEYITLDVSGVGYKVHVPNPFFYR--EQDEHVIVFTHHYVREDQQTL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R+ F  L  V G+G + A+ +++      L+++I  +N K + + PG+  K 
Sbjct: 59  YGFRSRRERELFNKLLGVNGIGPKGALAIVASGDMDALIDAIETENEKYLTKFPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A ++  +LKGK   L+     +               S    A  ALV LGY + + T  
Sbjct: 119 AKQMALDLKGKLSELAPDYVPNTGLF-------AQGASELDEACEALVALGYSEREITRV 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +      I      I+ AL+ +
Sbjct: 172 RKEL---NSEILTTDAYIKRALQLL 193


>gi|331697370|ref|YP_004333609.1| Holliday junction ATP-dependent DNA helicase ruvA [Pseudonocardia
           dioxanivorans CB1190]
 gi|326952059|gb|AEA25756.1| Holliday junction ATP-dependent DNA helicase ruvA [Pseudonocardia
           dioxanivorans CB1190]
          Length = 199

 Score =  148 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 106/205 (51%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +++V GV + ++    TL  L + G    L     +R+D + L
Sbjct: 1   MISSVRGEVLSVGLDHAVVEVGGVGFAVFATPATLGGL-RRGQEARLETLLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F+LLQ+V GVG R+A+  L+ +    L  ++   ++  + +IPG+  K 
Sbjct: 60  YGFADAEERELFVLLQTVSGVGPRLALATLAVLDPQSLRRALADGDTATLTRIPGVGRKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K ++ + V+  D+         + +  +     + ALV LG+    A  A
Sbjct: 120 AERLVVELRDKVVAPAPVLAGDV-------RPLVTGNAHRDQVVEALVGLGFTARPAEAA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +L  + + A+ + ++R AL  +
Sbjct: 173 VDGILAGDPD-AEPAALLRSALATL 196


>gi|227544210|ref|ZP_03974259.1| crossover junction endoribonuclease subunit A [Lactobacillus
           reuteri CF48-3A]
 gi|300908206|ref|ZP_07125672.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           reuteri SD2112]
 gi|133930481|gb|ABO43812.1| RuvA [Lactobacillus reuteri]
 gi|227185803|gb|EEI65874.1| crossover junction endoribonuclease subunit A [Lactobacillus
           reuteri CF48-3A]
 gi|300894633|gb|EFK87989.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           reuteri SD2112]
          Length = 199

 Score =  148 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 50/206 (24%), Positives = 94/206 (45%), Gaps = 7/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +  +   Y+++DV GV Y +                  ++V   +R+D I L
Sbjct: 1   MYEYLTGLVTVVAPQYIVVDVNGVGYKLLV-ANPYRYQEDRTKKVQVYVYQAVREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +++ FM L +V G+G + A+ +L+      LV++I   N   + + PGI  K 
Sbjct: 60  FGFTDQNEKKLFMQLINVSGIGPKSALAILANPDHQGLVDAITNNNVNYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +L+ K  +              +     ++     +A+ AL  LGY +      
Sbjct: 120 ASQIVLDLRDKLTN----ESSSSLFATTQLTVDATVNRELKDALEALAALGYKERDIKKV 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
             +++K+E+   D  + +R ALR ++
Sbjct: 176 QKTLMKEEQMATD--EYLRQALRLLN 199


>gi|28211817|ref|NP_782761.1| Holliday junction DNA helicase RuvA [Clostridium tetani E88]
 gi|44888475|sp|Q891Z7|RUVA_CLOTE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|28204259|gb|AAO36698.1| holliday junction DNA helicase ruvA [Clostridium tetani E88]
          Length = 197

 Score =  148 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 107/205 (52%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG  +G+++DY+ ++  G+ Y I+    TL    +  +   L+++   R D I L
Sbjct: 1   MYDYIKGIYKGMHKDYITVENNGIGYKIFTSGNTLYETPEKDEEIKLYIQQIPRDDSINL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ +R  F LL ++ GVGA+ ++ +LS  +  +L  SI+ +++ ++ + PGI  K 
Sbjct: 61  YGFFTEEERDMFNLLMTISGVGAKSSLSLLSVTSINKLKYSIVTEDTTLLTRAPGIGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K  +   +          +   I +    +  A+ AL++LGY Q ++  A
Sbjct: 121 AERIILELKDKFKNDDIISDI------DDLDSISNFQLHSAEALEALMSLGYSQKESEKA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +V K+         II+  L+ +
Sbjct: 175 LKNVDKEN----SLEDIIKACLKYL 195


>gi|87124238|ref|ZP_01080087.1| putative holliday junction DNA helicase RuvA [Synechococcus sp.
           RS9917]
 gi|86167810|gb|EAQ69068.1| putative holliday junction DNA helicase RuvA [Synechococcus sp.
           RS9917]
          Length = 216

 Score =  148 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 53/213 (24%), Positives = 95/213 (44%), Gaps = 8/213 (3%)

Query: 1   MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG ++G+    +E       LI   GV Y +    R ++   +     TL++    ++D
Sbjct: 1   MIGWLQGDRIDTWEQGSRRGWLIACAGVGYEVQLSERHMAD-PEQQRQVTLWIHQVQKED 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              LFGF    +R  F  L SV GVG +V + +L+   A ELV++I+  + + ++Q  G+
Sbjct: 60  GSSLFGFPERRERDLFRQLISVNGVGPQVGLALLACWRADELVDAILDGDVRRLSQAQGV 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS-MPSFAINAISALVNLGYGQD 175
             + A R+  EL+ +  +    +   +S V+++  H          +    L +LGY   
Sbjct: 120 GKRTAERLAVELRDRLAAGRHQMDAPLSLVDRQDLHALPIAADPLQDLQLTLTSLGYEDL 179

Query: 176 QATTAVVSVL--KKEKNIADDSQIIRLALRAIS 206
           +   A+ +V          D    +R  LR +S
Sbjct: 180 EIRRALKAVATGATSPAATDGEAWLRECLRWLS 212


>gi|325853052|ref|ZP_08171201.1| Holliday junction DNA helicase RuvA [Prevotella denticola CRIS
           18C-A]
 gi|325484426|gb|EGC87347.1| Holliday junction DNA helicase RuvA [Prevotella denticola CRIS
           18C-A]
          Length = 222

 Score =  148 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 59/209 (28%), Positives = 98/209 (46%), Gaps = 9/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMR----QD 56
           MI  I+G +  L     +++  GV Y +   + T S L +      L+V   +      D
Sbjct: 18  MIEYIRGELADLTPALAVVEAHGVGYALNISLNTYSAL-QGKTTVKLYVHEAIMTGGRDD 76

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF S  +R  + LL +V GVGA  A  +LS +T  EL   I   + K++  + GI
Sbjct: 77  SYTLYGFASRQERSLYRLLITVSGVGANTARMILSSLTPAELCNVIANADEKMLKTVKGI 136

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
            ++ A RI+ +LK K +        D   V+ +        +    A+SAL  LG+    
Sbjct: 137 GLRTAQRIIVDLKDKIMQ---SGIADELHVSSQPGTPAVDTAIKDEAVSALTMLGFSPAP 193

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           +   VVS+L  + ++    Q+++LAL+ I
Sbjct: 194 SAKVVVSILTDQPDLP-VEQVVKLALKMI 221


>gi|15604250|ref|NP_220766.1| Holliday junction DNA helicase RuvA [Rickettsia prowazekii str.
           Madrid E]
 gi|6226115|sp|Q9ZDE6|RUVA_RICPR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|3860942|emb|CAA14842.1| HOLLIDAY JUNCTION DNA HELICASE RUVA (ruvA) [Rickettsia prowazekii]
 gi|292571994|gb|ADE29909.1| Holliday junction DNA helicase RuvA [Rickettsia prowazekii Rp22]
          Length = 199

 Score =  148 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 69/203 (33%), Positives = 113/203 (55%), Gaps = 10/203 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G I+   +DYV+IDV GV Y++Y   +TL+ L + G F  LF+ETH+R++ I L
Sbjct: 1   MIGKLNGKIDSHCDDYVIIDVNGVGYLVYASGKTLAKLVE-GKFYKLFIETHVREEHIHL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++ +F LLQSV G+G ++A+ +LS +T T++  +I   +  +   I G+  K+
Sbjct: 60  YGFLTLEEKNFFNLLQSVNGIGTKMALSILSNLTPTDIQIAINNDDRNIFKAISGVGAKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RIM ELK K   +           +                + ALVNLG+ + +A   
Sbjct: 120 AERIMLELKDKITKI--------FSSSAIIKDSNISSIAINEVMKALVNLGFTRFEAQNT 171

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  ++ +   I    ++I+ AL+
Sbjct: 172 VQGIITQNPKI-SIDELIKTALK 193


>gi|187935379|ref|YP_001885221.1| Holliday junction DNA helicase RuvA [Clostridium botulinum B str.
           Eklund 17B]
 gi|229560022|sp|B2TMZ1|RUVA_CLOBB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|187723532|gb|ACD24753.1| Holliday junction DNA helicase RuvA [Clostridium botulinum B str.
           Eklund 17B]
          Length = 198

 Score =  148 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 105/205 (51%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG   G+ +DY++I+  G+ Y I+    T+S +   G+   L++E  +R+D I L
Sbjct: 1   MYEYIKGEYMGINKDYIIIENNGIGYKIFTSGATMSSMPCCGEKIKLYIEQIVREDFIGL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  + + F +L S+ GVGA+ A+ +LS      L  +II  + K + +  GI  K 
Sbjct: 61  YGFESLEELEMFKMLLSINGVGAKAALSLLSISRLNNLKYAIITGDEKHLCRGVGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ ELK K         + ++C+++              A+SAL++LGY + +A   
Sbjct: 121 AARIILELKDKLK-----TDELLNCIDEFDDVTQDNSLAVSEALSALISLGYTEKEAEKV 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  V K E        II+ AL  +
Sbjct: 176 LRDVDKSE----SVENIIKSALVKL 196


>gi|254460781|ref|ZP_05074197.1| Holliday junction DNA helicase RuvA [Rhodobacterales bacterium
           HTCC2083]
 gi|206677370|gb|EDZ41857.1| Holliday junction DNA helicase RuvA [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 222

 Score =  148 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 69/220 (31%), Positives = 116/220 (52%), Gaps = 15/220 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G I+    D+V++DV+GV Y++YC  RTL+ L + G+  +L+ +  +R+D ++L
Sbjct: 1   MIGKLSGRIDYRAADHVMMDVRGVGYMVYCSDRTLAGLPRAGEVVSLYTDLLVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++W  LL SVQG+GA+ ++ +L  + A  +  +I L +   I    G+  K 
Sbjct: 61  FGFTTLVEKEWHRLLMSVQGIGAKASLAILGALGADGVSRAIALADVTAIKAAKGVGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC--------------SMPSFAINAISA 166
           A R++ ELK KA  + ++     +    E                      S    A+SA
Sbjct: 121 AQRVVIELKDKAPGVMAMGGGTPATAMGEVPAADDFDVIETSAVKVSVPSASAQAEALSA 180

Query: 167 LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           L NLGY   +A +AV      +   A  S +IR AL+ ++
Sbjct: 181 LSNLGYAPSEAASAVAEAAGADPE-ATTSALIRAALKLLA 219


>gi|262373115|ref|ZP_06066394.1| Holliday junction DNA helicase RuvA [Acinetobacter junii SH205]
 gi|262313140|gb|EEY94225.1| Holliday junction DNA helicase RuvA [Acinetobacter junii SH205]
          Length = 201

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 64/205 (31%), Positives = 102/205 (49%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  L    VL++V GV Y I  P+ T   L K G   TL+    +R+D  +L
Sbjct: 1   MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++  F  L  V GVG ++A+G+LS ++   L+ +I   +   + ++PG+  K 
Sbjct: 60  YGFSEAQEKIIFRTLLKVNGVGPKMALGILSTLSVELLIHTIEHDDINTLIKVPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+M EL+ +  +LS            +   +    S    A +AL +LGY   +A  A
Sbjct: 120 AERLMIELRDRFKALSQSANSTSQTTTSQIQFMS--NSPVAEAEAALQSLGYKPIEAQKA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +V       AD   IIR AL+++
Sbjct: 178 VAAVKADYTESAD---IIRAALKSM 199


>gi|229829132|ref|ZP_04455201.1| hypothetical protein GCWU000342_01217 [Shuttleworthia satelles DSM
           14600]
 gi|229792295|gb|EEP28409.1| hypothetical protein GCWU000342_01217 [Shuttleworthia satelles DSM
           14600]
          Length = 199

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 9/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I+G +E +  + +++D  G+ Y I  P  +LS + +      ++    +R D   L
Sbjct: 1   MFSYIQGRVEEINPEGIVLDHDGIGYEIGLPQSSLSQIRRQMQ-LRVYTYLQVRDDGFSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL   D   F LL  V G+G + A+ +L  ++  +L  +I   + K IAQ PGI  K 
Sbjct: 60  FGFLKREDLDLFKLLIGVGGIGPKGALSILGVLSVDQLRFAIAAGDDKTIAQAPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +L+ K         Q +      +A   S       AI AL  LGY   +A  A
Sbjct: 120 AQRVILDLRDKID-----FTQTLEAQLDSKASDRSSDDIRGEAILALNALGYSSAEALQA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +   + +      +IR  L+ ++
Sbjct: 175 IRDL---DISSMSVEDLIRAGLKELA 197


>gi|255325096|ref|ZP_05366202.1| holliday junction DNA helicase RuvA [Corynebacterium
           tuberculostearicum SK141]
 gi|255297661|gb|EET76972.1| holliday junction DNA helicase RuvA [Corynebacterium
           tuberculostearicum SK141]
          Length = 205

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 105/205 (51%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +ID  GV Y      +TL  L + G+  T+     +++D + L
Sbjct: 1   MIAALRGEVIHIGLDHGVIDCAGVGYKFLATPKTLGTL-RRGEQATVLTNLVVKEDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +D DR+ F +LQSV G+G ++A+  LS + A EL  +I  ++ K +  IPG+  ++
Sbjct: 60  YGFSADEDREMFHVLQSVSGLGPKLALAALSVMGAGELAAAIGAEDVKALQSIPGVGKRM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+  ELK K    +    +  +  + E A   +  +   +   ALV LG+    A   
Sbjct: 120 AQRLALELKDKVAGFAP--SEPAAAGSVETAIAPAGGAVVESVTEALVGLGFTDKGARPV 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V S   +  ++ D S ++R AL  +
Sbjct: 178 VESAYAENPDV-DTSSLLRAALAQL 201


>gi|317472815|ref|ZP_07932126.1| Holliday junction DNA helicase RuvA [Anaerostipes sp. 3_2_56FAA]
 gi|316899734|gb|EFV21737.1| Holliday junction DNA helicase RuvA [Anaerostipes sp. 3_2_56FAA]
          Length = 198

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 95/205 (46%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +  +     +++  G+ Y I  P       G IG    ++   H+R+D I L
Sbjct: 1   MISYIKGILVSMTPGGAVVENNGIGYDIMMPAG-QEFPGGIGQEVRIYTHMHVREDDISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  + + F LL  V G+G +V + VLS ++  EL  +++  +SK I++ PG+  K 
Sbjct: 60  FGFRTKEELEAFELLIGVSGIGPKVGLSVLSTLSVYELKIAVMSDDSKTISKTPGLGPKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ EL+ K         + M       A      +        LV+LGY + +A  A
Sbjct: 120 AKKLILELRDKLDFEEFEQAEPMDFAGDLPAEDSVAVTA-----QGLVSLGYSRSEAMMA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  V  +        Q+++ AL  +
Sbjct: 175 IKKV--ENAAEYSPEQLLKKALTKL 197


>gi|257870592|ref|ZP_05650245.1| holliday junction DNA helicase RuvA [Enterococcus gallinarum EG2]
 gi|257804756|gb|EEV33578.1| holliday junction DNA helicase RuvA [Enterococcus gallinarum EG2]
          Length = 196

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 90/205 (43%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  ++  Y++++  G+ Y +       +  GK+     +++   +R+D   L
Sbjct: 1   MYEYIIGKVTDIFPAYIVVETHGIGYQVAF-GNPYAFSGKLNQEVKIYLHQVIREDAHSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +   +Q F+ L SV G+G + A+ +++      L+ ++   +   + + PG+  K 
Sbjct: 60  YGFSTLEGKQLFLKLISVSGIGPKSALAIMANEDHAGLITAVENGDVTYLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   L               A +    +    A++AL  LGY + +   A
Sbjct: 120 AQQMILDLKGKVAELVGEEPT---------APVTVANTALDEAMAALKALGYSEKEIKKA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +           + +R AL+ +
Sbjct: 171 EKYLAPN--TTKSTDEYLREALKLM 193


>gi|159899035|ref|YP_001545282.1| Holliday junction DNA helicase RuvA [Herpetosiphon aurantiacus ATCC
           23779]
 gi|229560066|sp|A9AZL0|RUVA_HERA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|159892074|gb|ABX05154.1| Holliday junction DNA helicase RuvA [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 197

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 65/204 (31%), Positives = 109/204 (53%), Gaps = 11/204 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G ++ + +D V+IDV GV   I  P   L+ +G IGD   L+   H+R+D + L
Sbjct: 1   MIASVRGVVQLIGQDQVVIDVHGVGLAIAVPRTVLATIGAIGDTAQLYTHLHVREDMLAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S   R  F LL  V G+G +VA+ +LS  T  EL  +I  ++  +++++PGI  K 
Sbjct: 61  FGFSSPAQRALFELLLGVSGIGPKVALALLSAATPEELQHAIAREDITMLSKVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+R++ ELKGK           ++ ++ + +    + +     I  L +LGY   +A  A
Sbjct: 121 AARLVLELKGKFG---------VATISPQLSTNPGLLALNTELIDILTSLGYSTTEAQAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           + ++       AD  + +RLAL+ 
Sbjct: 172 LNALPADAP--ADTEERLRLALQY 193


>gi|149203738|ref|ZP_01880707.1| Holliday junction DNA helicase motor protein [Roseovarius sp.
           TM1035]
 gi|149142855|gb|EDM30897.1| Holliday junction DNA helicase motor protein [Roseovarius sp.
           TM1035]
          Length = 220

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 70/218 (32%), Positives = 114/218 (52%), Gaps = 13/218 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G I+    D+VLIDV+GV Y++YC  RTLS L  +G    L+ +  +R+D ++L
Sbjct: 1   MIGRVAGRIDYRGTDHVLIDVRGVGYLVYCSERTLSALPAVGGMAALYTDLLVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++W  LL SVQGVGA+ ++ +L  +    +  +I + +   +    GI  K 
Sbjct: 61  FGFPTLVEKEWHRLLMSVQGVGAKASLAILGALGPDGVGRAIAIGDWNSVTAAKGIGAKT 120

Query: 121 ASRIMTELKGKAI------------SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALV 168
           A R++ ELK KA               +    + +   +     +   P     A+SAL 
Sbjct: 121 AQRVVNELKDKAPLVMAMGAAPAPMPAAPDTDEVIETASVPTPPVPPSPGAQAEALSALT 180

Query: 169 NLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           NLGY   +A  AV  V  +    A  +++IR ALR ++
Sbjct: 181 NLGYTPGEAAGAVAQVAGETPE-ATTAELIRAALRRLA 217


>gi|145220343|ref|YP_001131052.1| Holliday junction DNA helicase RuvA [Prosthecochloris vibrioformis
           DSM 265]
 gi|189045761|sp|A4SGE1|RUVA_PROVI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|145206507|gb|ABP37550.1| Holliday junction DNA helicase subunit RuvA [Chlorobium
           phaeovibrioides DSM 265]
          Length = 200

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 100/205 (48%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G +     +  +++V G+ Y       T   L ++G    L+    +R+D ++L
Sbjct: 1   MYAYFRGRLVSCLPEEAVLEVSGIAYRFLVSAGTARQLPEVGTETILYTHLSVREDALQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F LL    GVG ++A+ VLS +   E+ E+I+    + +  I G+  K 
Sbjct: 61  YGFATEEEKQLFRLLLLTSGVGPKLALAVLSGMAVPEVHEAILANAPERLFGITGVGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ EL+ K + L+ V     S              F  +A++AL+ LG+ +  A  A
Sbjct: 121 AARIILELRDKILKLAPVGSAVASV-------AADRGGFREDAVNALMTLGFPRPVANQA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V   L+ E + A    +I+ AL  +
Sbjct: 174 VGCALEPEPD-ASLEVVIKRALATM 197


>gi|15605230|ref|NP_220016.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis
           D/UW-3/CX]
 gi|6685940|sp|O84509|RUVA_CHLTR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|3328938|gb|AAC68102.1| Holliday Junction Helicase [Chlamydia trachomatis D/UW-3/CX]
 gi|296436962|gb|ADH19132.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis G/11222]
 gi|297748631|gb|ADI51177.1| RuvA [Chlamydia trachomatis D-EC]
 gi|297749511|gb|ADI52189.1| RuvA [Chlamydia trachomatis D-LC]
          Length = 200

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 99/205 (48%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIR 59
           M   IKG +  + E YV+I+  G+ Y I    R L  L   +     ++V + +R+ +  
Sbjct: 1   MYEYIKGTLTHINESYVVIESFGIGYAIMLSERFLVDLRAFMHQEVLIYVHSVIRETEHV 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF S  +R+ F LL S  G+G +  + +L+     EL     L+N K IA +PGI  K
Sbjct: 61  LYGFSSRAERECFRLLISFSGIGPKTGLSILNMFPLQELCSIARLENVKAIASVPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A ++M +LK K  +L  +  ++            +  S     I AL+NLG+ +  A  
Sbjct: 121 TAEKLMVDLKQKLPTLMPLYLEEP------VVPSSTANSSFKEGIGALMNLGFSRLAADR 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +   +K+    A  ++++ +ALR 
Sbjct: 175 MMTEAVKELSEEASVAELLPIALRK 199


>gi|118617340|ref|YP_905672.1| Holliday junction DNA helicase RuvA [Mycobacterium ulcerans Agy99]
 gi|183982124|ref|YP_001850415.1| Holliday junction DNA helicase RuvA [Mycobacterium marinum M]
 gi|166230572|sp|A0PPD2|RUVA_MYCUA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560107|sp|B2HN62|RUVA_MYCMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|118569450|gb|ABL04201.1| Holliday junction DNA helicase RuvA [Mycobacterium ulcerans Agy99]
 gi|183175450|gb|ACC40560.1| Holliday junction DNA helicase RuvA [Mycobacterium marinum M]
          Length = 197

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 94/205 (45%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+V+I+  GV Y +     TL+ L + G    L     +R+D + L
Sbjct: 1   MISSLRGEVLEVALDHVVIEAAGVGYRVNATPSTLATL-RQGTDARLITAMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+    R  F+ L SV GVG R+AM  LS   A  L +++   +   + ++PGI  + 
Sbjct: 60  YGFVDGETRDLFLTLLSVSGVGPRLAMATLSVHDANGLRQALADGDVTALTRVPGIGKRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K     S             A   +  +     + ALV LG+   QA  A
Sbjct: 120 AERMVVELRDKVGPAGSAAT----------APAVNGHTVRAPVVEALVGLGFAAKQAEEA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              VL  +   A  S  +R AL  +
Sbjct: 170 TDKVLAGDGE-ATTSSALRAALSLL 193


>gi|269219375|ref|ZP_06163229.1| holliday junction DNA helicase RuvA [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269211168|gb|EEZ77508.1| holliday junction DNA helicase RuvA [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 196

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 99/205 (48%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G++  +     +I+  GV Y +     TL+ L ++G    +     +R+D + L
Sbjct: 1   MIAALRGSVLSVEPTAAVIEAGGVGYAVQATPATLAGL-RVGQEAFVHTSLVVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R+ F +LQ+V GVG ++A+ +L+ +T   L +++   +   + ++ G+  K 
Sbjct: 60  FGFADADEREVFDVLQTVSGVGPKLALTILATLTPDRLRQAVANADIAALTRVSGVGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+  K                       S  + + + ++ALV LG+ +  A +A
Sbjct: 120 AQRLVLEIGAKLGPRRGG-----------DLEAPSSNARSGDVVAALVGLGFSERDAESA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              V K     A+  +++R +L+ +
Sbjct: 169 FSQVEKATPE-AEVPELLRASLKIL 192


>gi|147919262|ref|YP_687002.1| holliday junction resolvasome, DNA-binding subunit [uncultured
           methanogenic archaeon RC-I]
 gi|110622398|emb|CAJ37676.1| holliday junction resolvasome, DNA-binding subunit [uncultured
           methanogenic archaeon RC-I]
          Length = 201

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 59/209 (28%), Positives = 105/209 (50%), Gaps = 12/209 (5%)

Query: 1   MIGKIKGNIEGLYEDY--VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ-DQ 57
           MI  I+G I+   E    V+I+  G+ Y ++ P   L  L + G+ C L++ T+ R+ D 
Sbjct: 1   MIAHIEGKIDAKSESEEVVVIEAGGIGYEVHVPTPVLDQLPQEGEDCKLYIHTNFREEDG 60

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
             L+GF +  DR +F LL +V G+G +V +G++S  T  E+ E+I+ ++ K + ++ G+ 
Sbjct: 61  TTLYGFATIQDRDFFRLLLTVSGIGPKVGLGIMSGATVEEIAEAIVTEDLKTLTRMNGVG 120

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            K A R++ ELK K   L          +           + + +A+ ALV LGY +  A
Sbjct: 121 KKTAQRLVLELKDKVAKLR---------IMHHAKKQVKGDTASADAVDALVALGYSRQVA 171

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           + AV             ++++  +LR  +
Sbjct: 172 SDAVARARDNFTAPPLVNELVVASLRYAA 200


>gi|54025666|ref|YP_119908.1| Holliday junction DNA helicase RuvA [Nocardia farcinica IFM 10152]
 gi|81374258|sp|Q5YTE7|RUVA_NOCFA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|54017174|dbj|BAD58544.1| putative Holliday junction DNA helicase B subunit [Nocardia
           farcinica IFM 10152]
          Length = 201

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 98/205 (47%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+V+++  GV Y +     TL+ L + G    L+    +R+D + L
Sbjct: 1   MIASVRGEVLEIALDHVVVEAAGVGYRLNATPSTLATLTR-GAEARLYTAMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F LLQ+V GVG R+AM VL+ +    L +++   N   + ++PGI  + 
Sbjct: 60  YGFADTEARDLFGLLQTVSGVGPRLAMAVLAVLEPEALRKALAESNVAALTRVPGIGKRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K   +        S          +        + AL  LG+   QA  A
Sbjct: 120 AERMVVELRDKVNLVPVQAGPPGST------PAVAATPVREQVVEALTGLGFPLKQAEQA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +VL ++   AD S  +R AL  +
Sbjct: 174 LDTVLAEQP-AADTSTALRAALSLL 197


>gi|326562883|gb|EGE13170.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis 46P47B1]
 gi|326563676|gb|EGE13928.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis
           103P14B1]
 gi|326565244|gb|EGE15429.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis 12P80B1]
 gi|326570251|gb|EGE20296.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis BC8]
 gi|326570988|gb|EGE21012.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis BC7]
 gi|326573284|gb|EGE23252.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis
           101P30B1]
 gi|326576898|gb|EGE26804.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis O35E]
          Length = 204

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 65/207 (31%), Positives = 102/207 (49%), Gaps = 6/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYV-LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG I G ++ L      ++   GV Y I  PI +   L  IG    ++V  H+R+D I 
Sbjct: 1   MIGMISGQVQYLNAPIACILTSNGVGYEIELPIPSFCQL-TIGAQTAVYVHHHVREDAIN 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF+   DR  F  L  + GVGA++A+ +LS ++  E+  +I       + ++PGI  K
Sbjct: 60  LFGFMDRHDRDIFRKLIKINGVGAKMALAMLSTLSVAEIKHAIETDYDAALVRVPGIGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ +LKGK      +    M+          +         SAL+NLGY + +A  
Sbjct: 120 TAQRILLDLKGKLNEFGEM--HPMTAEGLFNQPADNSMLIIAEVESALMNLGYKEKEAQV 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           A+ +     KN  + S +++ ALR +S
Sbjct: 178 AIKNAQSDAKN--NTSDLLKAALRQLS 202


>gi|255348878|ref|ZP_05380885.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis 70]
 gi|255503418|ref|ZP_05381808.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis 70s]
 gi|255507096|ref|ZP_05382735.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis
           D(s)2923]
 gi|289525546|emb|CBJ15024.1| holliday junction DNA helicase [Chlamydia trachomatis Sweden2]
 gi|296435106|gb|ADH17284.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis E/150]
 gi|296438826|gb|ADH20979.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis E/11023]
          Length = 200

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 99/205 (48%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIR 59
           M   IKG +  + E YV+I+  G+ Y I    R L  L   +     ++V + +R+ +  
Sbjct: 1   MYEYIKGTLTHIDESYVVIESFGIGYAIMLSERFLVDLRAFMHQEVLIYVHSVIRETEHV 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF S  +R+ F LL S  G+G +  + +L+     EL     L+N K IA +PGI  K
Sbjct: 61  LYGFSSRDERECFRLLISFSGIGPKTGLSILNMFPLQELCSIARLENVKAIASVPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A ++M +LK K  +L  +  ++            +  S     I AL+NLG+ +  A  
Sbjct: 121 TAEKLMVDLKQKLPTLMPLYLEEP------VVPSSTANSSFKEGIGALMNLGFSRLAADR 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +   +K+    A  ++++ +ALR 
Sbjct: 175 MMTEAVKELSEEASVAELLPIALRK 199


>gi|295695626|ref|YP_003588864.1| Holliday junction DNA helicase RuvA [Bacillus tusciae DSM 2912]
 gi|295411228|gb|ADG05720.1| Holliday junction DNA helicase RuvA [Bacillus tusciae DSM 2912]
          Length = 198

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 51/206 (24%), Positives = 101/206 (49%), Gaps = 10/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G I G+  D+V++DVQGV Y +Y      + L   G    L  +   R+D   L
Sbjct: 1   MIAFLRGKIAGVNPDHVVMDVQGVGYKVYVAPSLAATL-HPGQEAVLHTQLVWREDGPTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R +F+L+Q+V G+G +VA+GV++      +  +++ ++   +  + G+  K 
Sbjct: 60  YGFADPRERDFFVLVQTVPGIGPKVALGVVAA-GIDRVSRAVVEEDMAFLRGLSGVGRKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +L+ +   L                   S      + ++AL  LGY + +  + 
Sbjct: 119 ADRLVVDLRDRLSGLVPDAAGPE--------REGSGVRPMEDVVAALSALGYNEREIQSI 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  + ++ K   +  ++IRLAL  ++
Sbjct: 171 MPVLRREWKEGREPEEMIRLALSQLA 196


>gi|168187973|ref|ZP_02622608.1| holliday junction DNA helicase RuvA [Clostridium botulinum C str.
           Eklund]
 gi|169294186|gb|EDS76319.1| holliday junction DNA helicase RuvA [Clostridium botulinum C str.
           Eklund]
          Length = 200

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 106/205 (51%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG   GL +DY++++   + Y IY    T++ +  I +   +++E  +R+D I +
Sbjct: 1   MFEYIKGTYMGLNKDYIIVESNNIGYKIYTSGNTMANMPNINEKVKIYIEQIVREDFIGV 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + +R  F LL ++ GVGA+ A+ +LS    + L  SI+ ++ K++ + PGI  KI
Sbjct: 61  YGFLREDERAMFNLLLTISGVGAKAALSLLSISNVSNLKVSIMQEDYKMLTRAPGIGKKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  ELK K   +    ++D+  V                A  ALV LG+ Q +A  A
Sbjct: 121 AQRITLELKDKIEKIY---EEDVENVKDISETSIDAGRKYDEATEALVALGFTQKEAEKA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++           QII+ +LR +
Sbjct: 178 LKNIDIN----KTIEQIIKDSLRYL 198


>gi|212550754|ref|YP_002309071.1| Holliday junction DNA helicase RuvA [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|229470529|sp|B6YR38|RUVA_AZOPC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|212548992|dbj|BAG83660.1| Holliday junction DNA helicase RuvA [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 196

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 99/205 (48%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  IKG I  L  D V+I+   + Y+++  + T   L KI   C L++   +R++  +L
Sbjct: 1   MLDFIKGEIVELIPDSVIIETGNIGYMLFISLNTYFSLTKIKS-CKLYIYEVIREETHQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+   +RQ F  L SV GVGA +A  VLS ++  EL E I   N   +  + GI  K 
Sbjct: 60  FGFIDKKERQLFTHLISVPGVGANIARMVLSSLSVCELEEIIFSGNVSALQALKGIGNKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K            +  + +        +    AI+AL+ LG+ Q  +   
Sbjct: 120 AERIIIDLKDKVK--------PDNIPSSDTIITNISSNITKEAITALITLGFSQSASQKV 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  ++    +     QII+ AL+ +
Sbjct: 172 VNKIVSNNSSSTTIEQIIKKALKLL 196


>gi|257440216|ref|ZP_05615971.1| holliday junction DNA helicase RuvA [Faecalibacterium prausnitzii
           A2-165]
 gi|257197250|gb|EEU95534.1| holliday junction DNA helicase RuvA [Faecalibacterium prausnitzii
           A2-165]
          Length = 202

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 95/206 (46%), Gaps = 7/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G I     + V++   GV Y + CP      L  +G   TL+    + ++ I L
Sbjct: 1   MIYSLSGKIIKKTLNAVVVSCGGVGYYVQCPTSVAGALPGVGREATLYTVMSVAENDISL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++  +  F LL +V GVG +V + +LS +    +  +I   + K      G+  K+
Sbjct: 61  YGFATEEQQSCFELLTAVSGVGPKVGLAILSVMEPDRVALAISAGDHKAFKAASGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K           ++  +   A        A  AI+ALV+LGY Q +A  A
Sbjct: 121 AQRIVLELKDKVAK---GFVDGINLEDVGAATAAPAAQGAGQAIAALVSLGYSQSEAALA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  +           +II+LALR ++
Sbjct: 178 VSKIDASLP----VEEIIKLALRGMA 199


>gi|227550815|ref|ZP_03980864.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX1330]
 gi|257887929|ref|ZP_05667582.1| holliday junction DNA helicase RuvA [Enterococcus faecium
           1,141,733]
 gi|257893270|ref|ZP_05672923.1| holliday junction DNA helicase RuvA [Enterococcus faecium
           1,231,408]
 gi|257896453|ref|ZP_05676106.1| holliday junction DNA helicase RuvA [Enterococcus faecium Com12]
 gi|293377530|ref|ZP_06623725.1| Holliday junction DNA helicase RuvA [Enterococcus faecium PC4.1]
 gi|227180052|gb|EEI61024.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX1330]
 gi|257823983|gb|EEV50915.1| holliday junction DNA helicase RuvA [Enterococcus faecium
           1,141,733]
 gi|257829649|gb|EEV56256.1| holliday junction DNA helicase RuvA [Enterococcus faecium
           1,231,408]
 gi|257833018|gb|EEV59439.1| holliday junction DNA helicase RuvA [Enterococcus faecium Com12]
 gi|292643845|gb|EFF61960.1| Holliday junction DNA helicase RuvA [Enterococcus faecium PC4.1]
          Length = 200

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 90/205 (43%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +  +   Y++++  G+ Y I           K+     ++V   +R+D   L
Sbjct: 1   MYEYLTGVVTFINPYYIVVETNGIGYQIAL-GNPYRYSSKLNQKIKIYVHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  ++Q F+ L SV G+G + A+ +++    + L++++   +   + + PG+  K 
Sbjct: 60  YGFDSLEEKQLFLRLVSVSGIGPKSALAIMASEDHSGLIQAVESSDVTYLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   LS      +              +    A+ AL  LGY   +    
Sbjct: 120 AQQMILDLKGKFGELSIDTPFSLFDEAT-----TKDATALSEAMEALSALGYSDREIKRV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +  KE +     + +R AL+ +
Sbjct: 175 EKQL--KEVDNQTTDEYLRQALKLM 197


>gi|304436498|ref|ZP_07396472.1| crossover junction ATP-dependent DNA helicase RuvA [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
 gi|304370544|gb|EFM24195.1| crossover junction ATP-dependent DNA helicase RuvA [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
          Length = 199

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 97/205 (47%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG +KG    +  DY L+DV  V Y ++   +T + +        L++ T++R+D I L
Sbjct: 1   MIGFLKGKATHITSDYCLLDVHDVGYRVFISNQTRAHI-SPSAEVMLYIHTNVREDAILL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +   F+ L  + G+G +VA G+LS  T  +    +  ++ K I ++PGI  K 
Sbjct: 60  YGFFSREEYDLFLHLIGISGIGPKVAQGILSSATVNDFYRMVQQKDVKGITKLPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K   +S     +            +  S    A  AL+ LG+   +    
Sbjct: 120 AERILLELKDKLSDVSVADLPE----GDNNVGTKTENSMIAEATEALLTLGFQDSEIQR- 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              V ++  +  +  ++IR AL  +
Sbjct: 175 ---VFRQRHSCQNTEELIRYALAEL 196


>gi|257878807|ref|ZP_05658460.1| holliday junction DNA helicase RuvA [Enterococcus faecium
           1,230,933]
 gi|257881445|ref|ZP_05661098.1| holliday junction DNA helicase RuvA [Enterococcus faecium
           1,231,502]
 gi|257885716|ref|ZP_05665369.1| holliday junction DNA helicase RuvA [Enterococcus faecium
           1,231,501]
 gi|257890666|ref|ZP_05670319.1| holliday junction DNA helicase RuvA [Enterococcus faecium
           1,231,410]
 gi|257899427|ref|ZP_05679080.1| holliday junction DNA helicase RuvA [Enterococcus faecium Com15]
 gi|258615122|ref|ZP_05712892.1| Holliday junction DNA helicase RuvA [Enterococcus faecium DO]
 gi|261207080|ref|ZP_05921769.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TC 6]
 gi|289565918|ref|ZP_06446358.1| Holliday junction DNA helicase RuvA [Enterococcus faecium D344SRF]
 gi|293556856|ref|ZP_06675417.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1039]
 gi|293563770|ref|ZP_06678209.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1162]
 gi|293570773|ref|ZP_06681823.1| holliday junction DNA helicase RuvA [Enterococcus faecium E980]
 gi|294614616|ref|ZP_06694520.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1636]
 gi|294618498|ref|ZP_06698062.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1679]
 gi|294621205|ref|ZP_06700390.1| holliday junction DNA helicase RuvA [Enterococcus faecium U0317]
 gi|314938831|ref|ZP_07846102.1| Holliday junction DNA helicase RuvA [Enterococcus faecium
           TX0133a04]
 gi|314943637|ref|ZP_07850391.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0133C]
 gi|314948716|ref|ZP_07852089.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0082]
 gi|314952166|ref|ZP_07855184.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0133A]
 gi|314991860|ref|ZP_07857317.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0133B]
 gi|314996573|ref|ZP_07861608.1| Holliday junction DNA helicase RuvA [Enterococcus faecium
           TX0133a01]
 gi|257813035|gb|EEV41793.1| holliday junction DNA helicase RuvA [Enterococcus faecium
           1,230,933]
 gi|257817103|gb|EEV44431.1| holliday junction DNA helicase RuvA [Enterococcus faecium
           1,231,502]
 gi|257821572|gb|EEV48702.1| holliday junction DNA helicase RuvA [Enterococcus faecium
           1,231,501]
 gi|257827026|gb|EEV53652.1| holliday junction DNA helicase RuvA [Enterococcus faecium
           1,231,410]
 gi|257837339|gb|EEV62413.1| holliday junction DNA helicase RuvA [Enterococcus faecium Com15]
 gi|260078708|gb|EEW66410.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TC 6]
 gi|289162291|gb|EFD10151.1| Holliday junction DNA helicase RuvA [Enterococcus faecium D344SRF]
 gi|291592518|gb|EFF24123.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1636]
 gi|291595255|gb|EFF26584.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1679]
 gi|291599201|gb|EFF30233.1| holliday junction DNA helicase RuvA [Enterococcus faecium U0317]
 gi|291600940|gb|EFF31231.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1039]
 gi|291604251|gb|EFF33746.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1162]
 gi|291609245|gb|EFF38517.1| holliday junction DNA helicase RuvA [Enterococcus faecium E980]
 gi|313589262|gb|EFR68107.1| Holliday junction DNA helicase RuvA [Enterococcus faecium
           TX0133a01]
 gi|313593565|gb|EFR72410.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0133B]
 gi|313595698|gb|EFR74543.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0133A]
 gi|313597674|gb|EFR76519.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0133C]
 gi|313641842|gb|EFS06422.1| Holliday junction DNA helicase RuvA [Enterococcus faecium
           TX0133a04]
 gi|313644888|gb|EFS09468.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0082]
          Length = 200

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 90/205 (43%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +  +   Y++++  G+ Y I           K+     ++V   +R+D   L
Sbjct: 1   MYEYLTGVVTFINPYYIVVETNGIGYQIAL-GNPYRYSSKLNQKIKIYVHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  ++Q F+ L SV G+G + A+ +++    + L++++   +   + + PG+  K 
Sbjct: 60  YGFDSLEEKQLFLRLVSVSGIGPKSALAIMASEDHSGLIQAVESSDVTYLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   LS      +              +    A+ AL  LGY   +    
Sbjct: 120 AQQMILDLKGKFGELSIDTPFSLFDEAN-----TKDATALSEAMEALSALGYSDREIKRV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +  KE +     + +R AL+ +
Sbjct: 175 EKQL--KEVDNQTTDEYLRQALKLM 197


>gi|313203476|ref|YP_004042133.1| holliday junction DNA helicase subunit ruva [Paludibacter
           propionicigenes WB4]
 gi|312442792|gb|ADQ79148.1| Holliday junction DNA helicase subunit RuvA [Paludibacter
           propionicigenes WB4]
          Length = 196

 Score =  147 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 100/205 (48%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I  L   YV+++  G+ Y I+  + T S LG+      L+V   +R+D   L
Sbjct: 1   MIDYIKGEISELTPAYVVLETAGIGYFIHITLPTFSFLGE-HTSAKLYVYESIREDAHVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +RQ F+LL SV G+GA  A  ++S  +A E+ + I   N   +  I GI  K 
Sbjct: 60  YGFRLQSERQLFLLLISVSGIGANTARMIMSSYSAQEIQDMIASGNVSALNAIKGIGTKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K +  +   +                      A+SALV LG+    +   
Sbjct: 120 AQRIIVDLKDKIMKSAGGSEI-------ISLVPNVQNEKKEEAVSALVMLGFAASASQKV 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +++++  +    Q+I+LAL+ +
Sbjct: 173 VDKIVQEQPALK-VEQLIKLALKMM 196


>gi|20455269|sp|Q9L9C4|RUVA_RHIET RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|7110154|gb|AAF36813.1|AF175525_1 RuvA [Rhizobium etli]
          Length = 206

 Score =  147 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 83/208 (39%), Positives = 126/208 (60%), Gaps = 5/208 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + EDYVL+DVQGVCY+ YC  RTLS LG  G+ C LF+ET++R+DQ++L
Sbjct: 1   MIGKLKGTIDEIGEDYVLVDVQGVCYVAYCSARTLSKLGSAGEACVLFIETYVREDQLKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELV--ESIILQNSKVIAQIPGISM 118
           FGF++ L+R+WF LL       A       SR           I LQ+   +++ PG+  
Sbjct: 61  FGFMTALEREWFNLLSKASRASAPRWRSPCSRPLNARPSSPMPIALQDRAAVSRAPGVGP 120

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K+A R++TELK +A + +    + ++   K +       +   +A+SAL NLGY +DQA 
Sbjct: 121 KVAMRLVTELKNRAPAYAG---EAINIALKRELGEGVAAAPVADAVSALTNLGYSRDQAA 177

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
            AV + +K     AD +++IRL L+ ++
Sbjct: 178 NAVAAAMKTAGEGADSAKLIRLGLKELA 205


>gi|294674697|ref|YP_003575313.1| Holliday junction DNA helicase RuvA [Prevotella ruminicola 23]
 gi|294472323|gb|ADE81712.1| Holliday junction DNA helicase RuvA [Prevotella ruminicola 23]
          Length = 200

 Score =  147 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 100/205 (48%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +  L      ++  GV Y +   + T S + +      L+V   +R+D   L
Sbjct: 1   MIEYIKGELTELTPALATVEACGVGYGLNISLNTFSAI-QGKKEVKLYVYEAIREDAHVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF++  +R+ F+LL +V GVGA  A  +LS ++  EL  +I + N+K+I  I GI    
Sbjct: 60  FGFVNKKEREMFLLLITVSGVGANTARMMLSGMSVAELCNAISMGNAKLIQGIKGIGKMT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +L+ K ++L    +         Q            AI+AL  LG+        
Sbjct: 120 AQRIIVDLRDKIVTLGISDEIPAGG----QIAAPVNNQVKDEAIAALTMLGFAPAPTQKV 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+ +L+   N A   ++++LAL+ I
Sbjct: 176 VLQILQANPN-APVEEVVKLALKQI 199


>gi|16079826|ref|NP_390652.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221310713|ref|ZP_03592560.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315037|ref|ZP_03596842.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319958|ref|ZP_03601252.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324239|ref|ZP_03605533.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321312303|ref|YP_004204590.1| Holliday junction DNA helicase RuvA [Bacillus subtilis BSn5]
 gi|3183558|sp|O05392|RUVA_BACSU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|2635239|emb|CAB14734.1| Holliday junction DNA helicase [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|6977805|emb|CAB75330.1| RuvA protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|291485185|dbj|BAI86260.1| Holliday junction DNA helicase motor protein [Bacillus subtilis
           subsp. natto BEST195]
 gi|320018577|gb|ADV93563.1| Holliday junction DNA helicase RuvA [Bacillus subtilis BSn5]
          Length = 201

 Score =  147 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 99/205 (48%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG I+ +   Y++I+  G+ Y I+ P   +    K     T+F   H+R+D   L
Sbjct: 1   MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPNPFIY---KERSQETIFTYHHIREDAFSL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++  F  L +V G+G + A+ +L       ++++I  ++   + + PG+  K 
Sbjct: 58  YGFSTREEKALFTKLLNVTGIGPKGALAILGSGDPGAVIQAIENEDEAFLVKFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   +   + +++    +      +  +    A+ AL  LGY + +    
Sbjct: 118 ARQIILDLKGKLADVVPEMIENLFNHEERLEKQTAE-TALEEALEALRVLGYAEKEIKKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +  KE+      Q ++ AL+ +
Sbjct: 177 LPHL--KEEIGLTTDQYVKKALQKL 199


>gi|297626360|ref|YP_003688123.1| Holliday junction ATP-dependent DNA helicase [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922125|emb|CBL56693.1| Holliday junction ATP-dependent DNA helicase [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 203

 Score =  147 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 52/208 (25%), Positives = 106/208 (50%), Gaps = 9/208 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +  +  ++++IDV GV + +     T S L + G   T+F    +R+D ++L
Sbjct: 1   MIAQLHGKVAAIGANWLVIDVAGVGFQVSTTPNTTSAL-RTGQTATVFTSLVVREDAMKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F L ++  GVG ++A+ ++S +T  E   ++  ++   +  +PGI  K 
Sbjct: 60  YGFGGTDERDCFELCRTASGVGPKLALAIVSVLTPEEFATAVRTEDLPRLCTVPGIGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELK +  +L       ++  N   +     P++    ++ L +LG+    A  A
Sbjct: 120 AQKIVIELKDRVDALF------VAPTNGSASVAPVTPAWQEQVMAGLESLGWSSRDAEAA 173

Query: 181 VVSV--LKKEKNIADDSQIIRLALRAIS 206
             +V  L +E   A  + +++ AL +++
Sbjct: 174 CETVAPLAEEDPEATVAALMKAALASLA 201


>gi|188590168|ref|YP_001920351.1| Holliday junction DNA helicase RuvA [Clostridium botulinum E3 str.
           Alaska E43]
 gi|251779255|ref|ZP_04822175.1| Holliday junction DNA helicase RuvA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|229560021|sp|B2V337|RUVA_CLOBA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|188500449|gb|ACD53585.1| Holliday junction DNA helicase RuvA [Clostridium botulinum E3 str.
           Alaska E43]
 gi|243083570|gb|EES49460.1| Holliday junction DNA helicase RuvA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 198

 Score =  147 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 105/205 (51%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG   G+ +DY++I+  G+ Y I+    T+S +   G+   +++E  +R+D I L
Sbjct: 1   MYEYIKGEYMGINKDYIIIENNGIGYKIFTSGATMSSMPCCGEKIKIYIEQIVREDFIGL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +   F LL S+ GVGA+ A+ +LS      L  +II  + K + +  GI  KI
Sbjct: 61  YGFESLEELDMFKLLLSINGVGAKAALSLLSISRLNNLKYAIITGDEKHLCRGTGIGKKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K  S      + ++C+++              A+SAL++LGY + +A   
Sbjct: 121 AGRIILELKDKLKS-----DELLNCIDEFDDVTQDNSLALSEALSALISLGYTEKEAEKV 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  V K E        II+ AL  +
Sbjct: 176 LKDVDKSE----SVENIIKSALVKL 196


>gi|304317016|ref|YP_003852161.1| Holliday junction DNA helicase RuvA [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778518|gb|ADL69077.1| Holliday junction DNA helicase RuvA [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 188

 Score =  147 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 99/205 (48%), Gaps = 19/205 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I     DYV+++  G+ + I  P  TL  L    D   L+   H+++D  + 
Sbjct: 1   MIDYIKGAIVERGIDYVVVETLGIGFKIIVPTSTLRELPNTNDIIKLYTYLHVKEDGFQF 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  + + F  L +V GVG + A+ +LS I+      +I   +SK+I + PGI  K 
Sbjct: 61  YGFLTINEMEIFKKLIAVNGVGPKAAVSILSTISIDNFYNAIKNGDSKIIEKSPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K                   A    +   + + ++AL++LGY + ++ +A
Sbjct: 121 AQRIILELKDKL--------------FINNAEAVKIDDASEDVLNALLSLGYTRQESISA 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +     +  +    +R AL+ +
Sbjct: 167 LYGI-----DCTNTENALREALKKL 186


>gi|163790795|ref|ZP_02185221.1| Holliday junction DNA helicase RuvA [Carnobacterium sp. AT7]
 gi|159873975|gb|EDP68053.1| Holliday junction DNA helicase RuvA [Carnobacterium sp. AT7]
          Length = 204

 Score =  147 bits (371), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 100/205 (48%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ Y ++          K+    T++V   +R+D I L
Sbjct: 1   MFEYIKGIVTFVSPAYIVLENSGIGYQLFI-ANPFRFSSKLNAEATIYVHQAVREDAITL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++Q ++ L SV G+G +  + +L+      LV++I  +++  + + PG+  K 
Sbjct: 60  YGFKDYTEKQLYLKLLSVSGIGPKSGLAILANDDHQGLVQAIENEDAAYLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK   L S+ Q + +   +++  + +  S    A+ AL  LGY   +    
Sbjct: 120 ASQIVLDLKGKLADL-SLTQAESTTDYQQELVLSTNYSHVTEAVEALEALGYSAKEIKKI 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              + K  K        +R ALR +
Sbjct: 179 EPQIRKLNKE--STDAYLREALRLL 201


>gi|182439809|ref|YP_001827528.1| Holliday junction DNA helicase RuvA [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326780473|ref|ZP_08239738.1| Holliday junction ATP-dependent DNA helicase ruvA [Streptomyces cf.
           griseus XylebKG-1]
 gi|229560130|sp|B1W3G3|RUVA_STRGG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|178468325|dbj|BAG22845.1| putative Holliday junction DNA helicase subunit B [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326660806|gb|EGE45652.1| Holliday junction ATP-dependent DNA helicase ruvA [Streptomyces cf.
           griseus XylebKG-1]
          Length = 208

 Score =  147 bits (371), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 54/212 (25%), Positives = 99/212 (46%), Gaps = 13/212 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L     +I+V G+   + C   TL+ L ++G    L     +R+D + L
Sbjct: 1   MIAFVSGPVAALAPTTAVIEVGGIGMAVQCTPHTLADL-RVGREARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +D +RQ F LLQ+  GVG R+A  +L+  +   L  ++   + K +  + GI  K 
Sbjct: 60  YGFANDDERQVFELLQTASGVGPRLAQAMLATHSPDALRLAVSTGDEKALTAVSGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK +        +   + + ++         +     +AL+ LGY   +A  A
Sbjct: 120 AQKLLLELKDRLG------EPVGAHIGQQGIGTPVTSGWRDQLQAALIGLGYASREADEA 173

Query: 181 VVSVLKK------EKNIADDSQIIRLALRAIS 206
           V +V  +      E       Q++R AL+ ++
Sbjct: 174 VNAVAPQAEAAVAEGTAPPVPQLLRAALQTLN 205


>gi|86605208|ref|YP_473971.1| Holliday junction DNA helicase RuvA [Synechococcus sp. JA-3-3Ab]
 gi|123765632|sp|Q2JWZ2|RUVA_SYNJA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|86553750|gb|ABC98708.1| Holliday junction DNA helicase RuvA [Synechococcus sp. JA-3-3Ab]
          Length = 204

 Score =  147 bits (371), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 50/209 (23%), Positives = 97/209 (46%), Gaps = 11/209 (5%)

Query: 1   MIGKIKGNIEGLY---EDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ 57
           MI  + G++  +       + ++VQG+ Y +  P R L  L  IG+   +F    +R+ +
Sbjct: 1   MIAFLSGHLVAIEWGERSSLTVEVQGIGYRVKAPARFLKQLPPIGEPVRVFTHLVVRETE 60

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
           + L+GF S  +R  F+ L  V GVG  + + +L+     ELV++++ +N ++++  PG+ 
Sbjct: 61  LVLYGFGSPAERDVFVELIKVSGVGPALGLALLNTFGLPELVQAVVTENVRLLSLTPGVG 120

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            K A R+  ELK K       ++                P+       AL+ LGY   + 
Sbjct: 121 HKTAQRLALELKTKLAHWRQGLEN-----ADRPLAGGPPPAIREEVEMALLALGYSLQEI 175

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
             A+ ++  + +      + +R A+  +S
Sbjct: 176 QAALQALPSQPRP---TEEWLRDAITYLS 201


>gi|87302215|ref|ZP_01085040.1| putative holliday junction DNA helicase RuvA [Synechococcus sp. WH
           5701]
 gi|87283140|gb|EAQ75096.1| putative holliday junction DNA helicase RuvA [Synechococcus sp. WH
           5701]
          Length = 221

 Score =  147 bits (371), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 50/217 (23%), Positives = 91/217 (41%), Gaps = 11/217 (5%)

Query: 1   MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG ++G++   ++      +L+   GV Y +    R    L   G    L+    +R D
Sbjct: 1   MIGWLQGHVAEPWQQGNRCGLLLACAGVGYEVQLTRRHWELLPPAGSPLCLYTHQSIRDD 60

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              LFGF +  +R  F LL +V GVG ++A+ +L  +   ELV +I+  + + + + PG+
Sbjct: 61  GWTLFGFGARHERDLFRLLVAVSGVGPQMALALLGTMPCEELVRAIVQADLRRLCRAPGV 120

Query: 117 SMKIASRIMTELKGKAIS------LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL 170
             + A R+  EL+GK          +                     S        L  L
Sbjct: 121 GKRTAERLAVELRGKLAESFGAAAAAGDDDLLDGVAGSTDGDPGPAASTREELQLTLTAL 180

Query: 171 GYGQDQATTAVVSVLKKEKNIA-DDSQIIRLALRAIS 206
           GY   + + A+ ++ ++  + A D    +   LR ++
Sbjct: 181 GYEPLEISRALRALGREGLDPAHDADAWLSACLRWLA 217


>gi|196250113|ref|ZP_03148807.1| Holliday junction DNA helicase RuvA [Geobacillus sp. G11MC16]
 gi|196210297|gb|EDY05062.1| Holliday junction DNA helicase RuvA [Geobacillus sp. G11MC16]
          Length = 194

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 93/205 (45%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G ++ +   Y++ID  G+ Y I+ P    +         T++   ++R+D   L
Sbjct: 1   MIEFIRGYVDYICPQYIVIDHNGIGYEIFTP-NPFAFEESREAAVTVYTYEYVREDVHAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  V G+G +  + +L+     EL  +I  +N   + + PG+  K 
Sbjct: 60  YGFLTREERNLFAKLLQVSGIGPKGGLAILAAGRPDELARAIEEENEAFLCKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK    S       +          S+      AI+AL  LGY + +    
Sbjct: 120 ARQMILDLKGKLTMFSMPTAPQPAA---------SLSGELAEAIAALKALGYAEREIEKI 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++ ++        Q ++ AL  +
Sbjct: 171 IPALREE---TMSTEQYVKRALAML 192


>gi|239637553|ref|ZP_04678525.1| holliday junction DNA helicase RuvA [Staphylococcus warneri L37603]
 gi|239596771|gb|EEQ79296.1| holliday junction DNA helicase RuvA [Staphylococcus warneri L37603]
          Length = 200

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 101/205 (49%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  L+  +V++DV GV Y I  P  +      +     +F    +R+D   L
Sbjct: 1   MYAYIKGKLTQLFPTHVVVDVNGVGYEIQTP-NSYRFQKYLDKEVQIFTSLIVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+++ ++  F+ L  V G+G + A+ +L+  T  E+ ++I  +N   + + PGI  K 
Sbjct: 60  YGFINEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKQAIENENDTYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK           ++ +N       +  S    A+ AL  LGY + + +  
Sbjct: 120 ARQIVLDLKGKVQITEENSDTLLNVMN----DSNANESMIKEAMLALEALGYSKRELSK- 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  VLK+  N+    + +++ L+ +
Sbjct: 175 VEKVLKQS-NMDSVDEAVKIGLQTL 198


>gi|288555342|ref|YP_003427277.1| Holliday junction DNA helicase RuvA [Bacillus pseudofirmus OF4]
 gi|288546502|gb|ADC50385.1| Holliday junction DNA helicase RuvA [Bacillus pseudofirmus OF4]
          Length = 205

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 101/206 (49%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G +  +   YV++D QG+ Y IYCP        ++ +   ++   H+R+D IRL
Sbjct: 1   MIDYINGVLVDIETRYVVLDHQGLGYQIYCP-NPYQFSKQLDEKVKIYTYQHVREDLIRL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L +V G+G + A+ +L+      +V +I  ++   + + PG+  K 
Sbjct: 60  FGFESKSERALFEKLLNVSGIGPKGALAILASGQPEHVVRAIEEEDEAFLVKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSC-VNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A +I+ +LKGK    S  +  + +  V+++   +    +    A+ AL  LGY + +   
Sbjct: 120 ARQIILDLKGKLDEFSPNLFNESTGLVSEKMTKVNKENTELEEALEALRALGYVEKELKK 179

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
               + +++         I+ AL+ +
Sbjct: 180 VRPKLEQEDMA---TDAYIKKALQLM 202


>gi|332653059|ref|ZP_08418804.1| holliday junction DNA helicase RuvA [Ruminococcaceae bacterium D16]
 gi|332518205|gb|EGJ47808.1| holliday junction DNA helicase RuvA [Ruminococcaceae bacterium D16]
          Length = 213

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 92/205 (44%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +  +    V+ID  GV Y       TLS L K G+   +F   ++R+D + L
Sbjct: 12  MFYYLNGTVAHIEPYLVVIDCGGVGYACRTTSYTLSAL-KKGEKGKVFTHLNVREDAMEL 70

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +   F  L SV GVG + A+ +LS  T   L  SII  + K +    GI  KI
Sbjct: 71  YGFATQEELNLFQQLISVSGVGPKAALSILSSNTPANLALSIITGDEKALTCAQGIGKKI 130

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K     +V     +        I         A +AL  LGY Q +   A
Sbjct: 131 AQRVILELKDKLAKGQAVNGAGETYGGTGVTVIPENK--LSEASAALAVLGYTQGEINVA 188

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +   + +     QII+ AL+ +
Sbjct: 189 LKGI---DLDSLTLEQIIKQALKKM 210


>gi|323706513|ref|ZP_08118072.1| Holliday junction DNA helicase RuvA [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534143|gb|EGB23935.1| Holliday junction DNA helicase RuvA [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 186

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 21/205 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG+I     DYV+I+  G+ + I  P  TLS L    +   L+   H+++D  +L
Sbjct: 1   MIDYIKGHIVEKGIDYVVIETLGIGFKIIVPRSTLSHLTNTSEIIKLYTYMHVKEDGFQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  + + F  L +V GVG + A+ +LS I+     ++I   +SK I + PGI  K 
Sbjct: 61  YGFLTTNEVEIFKKLIAVNGVGPKAAVSILSTISIEGFYDAIRNSDSKAIEKSPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K                   AH   +   + + + AL++LGY + ++  A
Sbjct: 121 AQRIILELKDKLT----------------FAHDVKLDDLSNDVVDALLSLGYTKQESIKA 164

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  V     + ++    ++ AL+ +
Sbjct: 165 LEGV-----DCSNLESALKEALKKL 184


>gi|315640091|ref|ZP_07895215.1| crossover junction ATP-dependent DNA helicase RuvA [Enterococcus
           italicus DSM 15952]
 gi|315484154|gb|EFU74626.1| crossover junction ATP-dependent DNA helicase RuvA [Enterococcus
           italicus DSM 15952]
          Length = 200

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 94/205 (45%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ Y +          GK  +   ++V   +R+D   L
Sbjct: 1   MYEFIKGVVADIQPSYIVLEANGIGYQLVM-GNPYRYSGKKTEEVKVYVHLIVREDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++  F+ L SV G+G + A+ +++      L+ +I   +   + + PG+  K 
Sbjct: 60  YGFEKLQEKLLFLRLISVSGIGPKSAIAIMANDDHEGLIAAIESDDVTYLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   L+  +  +++          +  S    AISAL  LGY + +    
Sbjct: 120 AQQMILDLKGKLGELAGELTGNLAM-----PLFDTDTSALTEAISALSALGYSEREIKRV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             ++ K+        + +R AL+ +
Sbjct: 175 ETTLKKE--GAHSTDEYLRKALKLL 197


>gi|332826883|gb|EGJ99683.1| Holliday junction ATP-dependent DNA helicase ruvA [Dysgonomonas
           gadei ATCC BAA-286]
          Length = 193

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 68/205 (33%), Positives = 99/205 (48%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I  L    V ++  GV Y I   + T S L        LF+   +R+D  +L
Sbjct: 1   MIDYIKGEITELTPASVTLETYGVGYFISISLNTYSNLTGKKS-AQLFIYEAIREDAHQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R+ FMLL SV G+GA     +LS +   EL   I   NS ++  + GI +K 
Sbjct: 60  FGFFDKQERELFMLLISVSGIGASTGRMILSSMNTQELANVIASGNSDMLKTVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K   +S + Q DM                   A++ALV LG+ Q  +   
Sbjct: 120 AQRVIVDLKDKI-KVSGIEQVDMFASGHPSG---------EEAVAALVMLGFTQQASQKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +LK +K  +   QII+ AL+ +
Sbjct: 170 VAKILK-DKADSTVEQIIKTALKML 193


>gi|225572217|ref|ZP_03781081.1| hypothetical protein RUMHYD_00511 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040279|gb|EEG50525.1| hypothetical protein RUMHYD_00511 [Blautia hydrogenotrophica DSM
           10507]
          Length = 201

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 104/205 (50%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG + G+ E  +L++  G+ Y I+ P+         G    +    H+R+D ++L
Sbjct: 1   MIAFMKGTLAGIEETKILLEHDGIGYEIFIPMDGRVDRLYTGQELMVHTYLHVREDVLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  D + F LL  V GVG + A+G+LS I+A EL  +++ ++ K I++ PGI  K 
Sbjct: 61  YGFLTRDDLEIFRLLLGVNGVGPKAALGILSAISADELRFAVLAEDIKTISKAPGIGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK K  +L    ++ +       A    +      A  AL  LGYG  QA  A
Sbjct: 121 AQKLVLELKDKL-NLQDAFEKKLEHEYSSSAS-QEITDARQEAAEALTALGYGSTQALQA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V        D   +++ AL+ +
Sbjct: 179 VRKV--DGWEKMDVETLLKAALKNM 201


>gi|323344791|ref|ZP_08085015.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella
           oralis ATCC 33269]
 gi|323094061|gb|EFZ36638.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella
           oralis ATCC 33269]
          Length = 204

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 57/209 (27%), Positives = 102/209 (48%), Gaps = 10/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM----RQD 56
           MI  I+G +  L     +++V G+ Y +   + T S + +  +   L+V   +    R D
Sbjct: 1   MIEYIRGELAELTPALAVVEVAGIGYALSISLNTYSAI-QGKEKVKLYVHEALVTGGRDD 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF S  +R+ + LL +V GVGA  A  +LS I+  EL   I   + +++  + GI
Sbjct: 60  SFTLYGFASKQERELYRLLITVSGVGANTARMILSTISPAELCNVIANGDERMLKAVKGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
            ++ A RI+ +LK K ++     +  +S     +            A+SAL  LG+    
Sbjct: 120 GLRTAQRIIVDLKDKIVNSGIATELHVSS----EPAAMVNNGIKDEAVSALTMLGFSPAP 175

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           +  AV  +LK + ++    Q+++LAL+ I
Sbjct: 176 SAKAVTEILKADPDLP-VEQVVKLALKQI 203


>gi|256825358|ref|YP_003149318.1| Holliday junction DNA helicase subunit RuvA [Kytococcus sedentarius
           DSM 20547]
 gi|256688751|gb|ACV06553.1| Holliday junction DNA helicase subunit RuvA [Kytococcus sedentarius
           DSM 20547]
          Length = 209

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 99/210 (47%), Gaps = 6/210 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G I  +  D+++++V GV   +  P +  + + + G    L     +R+D + L
Sbjct: 1   MIASLSGTITHVGLDHLVVEVGGVGMRVLVPPQVAAEV-RTGQEARLETSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL    R+ F  +QSV GVG R+A+ +++ ++  EL  ++  ++   +  +PGI  K 
Sbjct: 60  FGFLDADTREVFETVQSVSGVGPRLALALVAVLSPAELSRAVHTEDLAALTSVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL GK  +         +   +      S P++A     AL  LG+   QAT A
Sbjct: 120 AQRLVLELVGKLPA-DLGGGAAPTTTEQSAGGDPSEPAWAPQVRDALEGLGWNTAQATKA 178

Query: 181 ----VVSVLKKEKNIADDSQIIRLALRAIS 206
               V    +      +   ++R ALR  +
Sbjct: 179 TRTVVEQHAQDTGPPPELPVLLREALREAA 208


>gi|330683931|gb|EGG95698.1| Holliday junction DNA helicase RuvA [Staphylococcus epidermidis
           VCU121]
          Length = 200

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 103/205 (50%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  L+  +V++DV GV Y I  P  +      +     +F    +R+D   L
Sbjct: 1   MYAYIKGKLTQLFPTHVVVDVNGVGYEIQTP-NSYRFQKYLDKEVQIFTSLIVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+++ ++  F+ L  V G+G + A+ +L+  T  E+ ++I  +N   + + PGI  K 
Sbjct: 60  YGFINEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKQAIENENDAYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK           ++ +N+  A+     S    A+ AL  LGY + + +  
Sbjct: 120 ARQIVLDLKGKVQITEENTDTLLNVMNESNANE----SMIKEAMLALEALGYSKRELSK- 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  VLK+  N+    + +++ L+ +
Sbjct: 175 VEKVLKQS-NMESVDEAVKIGLQTL 198


>gi|138896159|ref|YP_001126612.1| Holliday junction DNA helicase RuvA [Geobacillus
           thermodenitrificans NG80-2]
 gi|166230554|sp|A4IRB3|RUVA_GEOTN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|134267672|gb|ABO67867.1| Holliday junction DNA helicase RuvA [Geobacillus
           thermodenitrificans NG80-2]
          Length = 194

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 94/205 (45%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G ++ +  +Y++ID  G+ Y I+ P    +         T++   ++R+D   L
Sbjct: 1   MIEFIRGYVDYICPEYIVIDHNGIGYEIFTP-NPFAFEESREAAVTVYTYEYVREDVHAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +R  F  L  V G+G +  + +L+     EL  +I  +N   + + PG+  K 
Sbjct: 60  YGFLTREERNLFAKLLQVSGIGPKGGLAILAAGRPDELARAIEEENEAFLCKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK    S       +          S+      AI+AL  LGY + +    
Sbjct: 120 ARQMILDLKGKLTMFSMPTAPRPAA---------SLSGELAEAIAALKALGYAEREIEKI 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++ ++        Q ++ AL  +
Sbjct: 171 IPALREE---TMSTEQYVKRALAML 192


>gi|293567841|ref|ZP_06679182.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1071]
 gi|291589426|gb|EFF21233.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1071]
          Length = 200

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 89/205 (43%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +  +   Y++++  G+ Y I           K+     ++V   +R+D   L
Sbjct: 1   MYEYLTGVVTFINPYYIVVETNGIGYQIAL-GNPYRYSSKLNQKIKIYVHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  ++Q F+ L SV G+G + A+ +++    + L++++   +   + + PG+  K 
Sbjct: 60  YGFDSLEEKQLFLRLVSVSGIGPKSALAIMASEDHSGLIQAVESSDVTYLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   LS      +              +    A+ AL  LGY   +    
Sbjct: 120 AQQMILDLKGKFGELSIDTPFSLFDEAN-----TKDATALSEAMEALSALGYSDREIKRV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              + K   +     + +R AL+ +
Sbjct: 175 EKQLKK--VDNQTTDEYLRQALKLM 197


>gi|256160418|ref|ZP_05458107.1| Holliday junction DNA helicase RuvA [Brucella ceti M490/95/1]
 gi|265998786|ref|ZP_06111343.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella ceti
           M490/95/1]
 gi|262553475|gb|EEZ09244.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella ceti
           M490/95/1]
          Length = 193

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 85/195 (43%), Positives = 130/195 (66%), Gaps = 2/195 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + ED+ +IDV GV Y+ +C  RTL  LG  G+   LF+ET++R+D IRL
Sbjct: 1   MIGKLKGVIDEIAEDHAVIDVHGVGYVAFCSARTLGNLGGAGEAAILFIETYVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + L+R+WF LLQ+VQGVGA+VA+ VL  ++ +EL  +I L++  ++++ PG+  K+
Sbjct: 61  YGFATQLEREWFRLLQNVQGVGAKVALAVLGTLSPSELANAIALRDIAMVSRAPGVGKKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELK KA + +      +    K++    + P+   +A+SAL NLGY +DQA  A
Sbjct: 121 AERIVTELKNKAPAFAGEASGTIGL--KQELGAGAAPAPVADAVSALSNLGYSRDQAANA 178

Query: 181 VVSVLKKEKNIADDS 195
           V + LK+    AD +
Sbjct: 179 VAAALKETGEGADSA 193


>gi|41407135|ref|NP_959971.1| Holliday junction DNA helicase motor protein [Mycobacterium avium
           subsp. paratuberculosis K-10]
 gi|118465009|ref|YP_882656.1| Holliday junction DNA helicase RuvA [Mycobacterium avium 104]
 gi|81414560|sp|Q741Q1|RUVA_MYCPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230566|sp|A0QIB8|RUVA_MYCA1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|41395486|gb|AAS03354.1| RuvA [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118166296|gb|ABK67193.1| holliday junction DNA helicase RuvA [Mycobacterium avium 104]
          Length = 199

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 92/205 (44%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +I+  GV Y +     TLS L + G    L     +R+D + L
Sbjct: 1   MIASVRGEVLEVALDHAVIEAAGVGYRVNATPSTLSTL-RTGTQARLITAMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F+ L SV GVG R+AM  L+   A  L +++   +   + ++PGI  + 
Sbjct: 60  YGFTDAETRDLFLTLLSVSGVGPRLAMATLAVHDAGALRQALHDGDVAALTRVPGIGKRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K  +  +      +  N                + ALV LG+   QA  A
Sbjct: 120 AERMVLELRDKIGAAGAAGAPAGAARNGHAVRGP--------VVEALVGLGFAAKQAEEA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              VL  E   A  S  +R AL  +
Sbjct: 172 TDKVLAAEPE-AGTSGALRAALSLL 195


>gi|154498068|ref|ZP_02036446.1| hypothetical protein BACCAP_02049 [Bacteroides capillosus ATCC
           29799]
 gi|150273058|gb|EDN00215.1| hypothetical protein BACCAP_02049 [Bacteroides capillosus ATCC
           29799]
          Length = 201

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 93/205 (45%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  +     ++D  GV Y       TL+ L + G+  TL+   ++R+D + L
Sbjct: 1   MFYYVKGPVVHMAPYLAVVDCGGVGYACRTTNNTLARL-RKGETATLYTHLNVREDAMEL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +   F LL SV GVG + A+ +LS  +   L  SII  + K +   PGI  KI
Sbjct: 60  YGFASENELSCFQLLISVSGVGPKAALSILSSTSPEGLATSIITGDEKALTVAPGIGKKI 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K            S        I    +    A      LGY Q +A  A
Sbjct: 120 AQRIILELKDKLAKGQLSTPGGESYGGTGVTVIPQNKASEAAAAL--AVLGYSQAEAAAA 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++   +       +II+ AL+ +
Sbjct: 178 LKNI---DMETLALEEIIKQALKKM 199


>gi|255101977|ref|ZP_05330954.1| Holliday junction DNA helicase RuvA [Clostridium difficile
           QCD-63q42]
 gi|255307845|ref|ZP_05352016.1| Holliday junction DNA helicase RuvA [Clostridium difficile ATCC
           43255]
 gi|328887746|emb|CAJ69694.2| Holliday junction ATP-dependent DNA helicase RuvA [Clostridium
           difficile]
          Length = 200

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 54/202 (26%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +E +Y D ++++  G+ Y I     T+  L ++G+   ++ +  +R+D + L
Sbjct: 1   MYSYIKGTVEEIYIDSIVVENNGIGYKINVSSNTIMNL-QVGEATKIYTKLIVREDDMSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF+S  + + F LL SV  +G +VA+ +LS  +  +L   I+ ++   +++ PG+  K 
Sbjct: 60  CGFVSREELKMFELLTSVSKIGPKVALSILSFASPAQLGAYILSEDIGKLSKAPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K    +   +  +                   ++ ALV LGY   ++  A
Sbjct: 120 AERIVLELKDKVDKNNIEFEPTLLSQKPTLIS-------QDESVDALVALGYTLSESKEA 172

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           V    K   +  +   II+ AL
Sbjct: 173 VQKCKK---DGMNTEAIIKKAL 191


>gi|146277278|ref|YP_001167437.1| Holliday junction DNA helicase RuvA [Rhodobacter sphaeroides ATCC
           17025]
 gi|166200252|sp|A4WRW8|RUVA_RHOS5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|145555519|gb|ABP70132.1| Holliday junction DNA helicase RuvA [Rhodobacter sphaeroides ATCC
           17025]
          Length = 224

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 67/206 (32%), Positives = 104/206 (50%), Gaps = 16/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGKI G ++    D+VLIDV+GV YI++   RTL+ +   G+   L+ E  +R+D ++L
Sbjct: 1   MIGKISGILDFRGPDHVLIDVRGVGYIVHVSDRTLAAMPAPGEGVALYTELVVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++W  LL +VQGVGA+  M +L  + A  +  +I L +++ I   PG+  KI
Sbjct: 61  FGFTTMIEKEWHRLLMTVQGVGAKAGMAILGALGAEGVARAISLGDARSIQAAPGVGPKI 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI----------------NAI 164
           A R++ ELK KA +L  +     +            P+                   +A+
Sbjct: 121 AQRVVLELKSKAPALMVMGGAAPARAAAVVEETPEEPAPRRKPSTRAAPPPAANHTGDAL 180

Query: 165 SALVNLGYGQDQATTAVVSVLKKEKN 190
           SAL NLGY    A  AV         
Sbjct: 181 SALTNLGYQPSDAAQAVAQASGDNPQ 206


>gi|220912786|ref|YP_002488095.1| Holliday junction DNA helicase RuvA [Arthrobacter chlorophenolicus
           A6]
 gi|254766940|sp|B8H9D7|RUVA_ARTCA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|219859664|gb|ACL40006.1| Holliday junction DNA helicase RuvA [Arthrobacter chlorophenolicus
           A6]
          Length = 213

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 102/208 (49%), Gaps = 13/208 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +     +ID+ G    +Y   +TLS L  +G+   +F    +R+D + L
Sbjct: 1   MISFLRGTVAHVGLSTAVIDLNGAGMSVYATPQTLSRL-HVGEEGKVFTSLIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF  D +R+ F +L SV GVG R+A+ VL+      +  +    ++K   ++PGI  K+
Sbjct: 60  FGFADDDEREVFEVLLSVSGVGPRLALAVLAVHDPEAIRVAAHTGDNKTFTKVPGIGPKV 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL GK +                 A   +  S+    ++A+ +LG+ +  A+ +
Sbjct: 120 AGRIVLELAGKLV---------PHGTAPAAATTAAEASWKPQVVAAMTSLGWSEKDASAS 170

Query: 181 VVSVLKKEKNIA---DDSQIIRLALRAI 205
           +   L  E  ++   +  +I+R  LR +
Sbjct: 171 IDKALADEPEVSFRGNVPEILRTTLRWL 198


>gi|282878437|ref|ZP_06287223.1| Holliday junction DNA helicase RuvA [Prevotella buccalis ATCC
           35310]
 gi|281299423|gb|EFA91806.1| Holliday junction DNA helicase RuvA [Prevotella buccalis ATCC
           35310]
          Length = 204

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 56/209 (26%), Positives = 99/209 (47%), Gaps = 10/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM----RQD 56
           MI  I+G +  L     +++  GV Y +   + T S + +      L+V   +    R D
Sbjct: 1   MIEYIRGELTELTPALAVLEAAGVGYGLNISLNTYSAI-QGKKEVKLYVHESLVTGGRDD 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
               +GF S  +R+ + LL +V GVGA  A  +LS ++  EL   I   + +++  + GI
Sbjct: 60  NFTFYGFFSKQERELYRLLITVSGVGANTARMILSTLSPAELCNVIANGDERMLKAVKGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
            +K A RI+ +L+ K +S     +  +S     +       S    A+SAL  LG+    
Sbjct: 120 GLKTAQRIIVDLRDKIVSSGIATELHVSS----EPATAVDASIRDEAVSALTMLGFSPAP 175

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           +   V  +LK + ++    Q+++LAL+ I
Sbjct: 176 SAKVVEGILKSDPSLP-VEQVVKLALKQI 203


>gi|255656790|ref|ZP_05402199.1| Holliday junction DNA helicase RuvA [Clostridium difficile
           QCD-23m63]
 gi|296452380|ref|ZP_06894081.1| crossover junction ATP-dependent DNA helicase RuvA [Clostridium
           difficile NAP08]
 gi|296877729|ref|ZP_06901756.1| crossover junction ATP-dependent DNA helicase RuvA [Clostridium
           difficile NAP07]
 gi|296258710|gb|EFH05604.1| crossover junction ATP-dependent DNA helicase RuvA [Clostridium
           difficile NAP08]
 gi|296431262|gb|EFH17082.1| crossover junction ATP-dependent DNA helicase RuvA [Clostridium
           difficile NAP07]
          Length = 200

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/202 (26%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +E +Y D ++++  G+ Y I     T+  L ++G+   ++ +  +R+D + L
Sbjct: 1   MYSYIKGTVEEIYIDSIVVENNGIGYKINVSSNTIMNL-QVGEATKIYTKLIVREDDMSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF+S  + + F LL SV  +G +VA+ +LS  +  +L   I+ ++   +++ PG+  K 
Sbjct: 60  CGFVSREELKMFELLTSVSKIGPKVALSILSFASPAQLGAYILSEDIGKLSKAPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K    +   +  +                   ++ ALV LGY   ++  A
Sbjct: 120 AERIVLELKDKVDKNNIEFEPTLLSQKPTLIS-------QDESVDALVALGYTLAESKEA 172

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           V    K   +  +   II+ AL
Sbjct: 173 VQKCKK---DGMNTEAIIKKAL 191


>gi|194017234|ref|ZP_03055846.1| holliday junction DNA helicase RuvA [Bacillus pumilus ATCC 7061]
 gi|194011102|gb|EDW20672.1| holliday junction DNA helicase RuvA [Bacillus pumilus ATCC 7061]
          Length = 201

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 102/205 (49%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG I+ +   YV+I+  GV Y +Y P   +  + K     T++   ++++D   L
Sbjct: 1   MIEFVKGTIDYVCPQYVVIENGGVGYQVYSPNPFIYQINK---HETIYTYHYIKEDAFSL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++  F  L +V G+G + A+ +L+      ++ +I  ++   + + PG+  K 
Sbjct: 58  YGFQTREEKALFTKLLNVTGIGPKGALAILASGDPGAVISAIEREDEAFLIKFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   +   +  ++         + +  +    A  AL  LGYG  +    
Sbjct: 118 ARQIILDLKGKLADVVPEMIGNLFNHEDH-IQVETQQTALDEAFEALSVLGYGDREIKKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +LK+EKN+    Q ++ AL+ +
Sbjct: 177 LP-LLKEEKNL-TTDQYVKKALQKM 199


>gi|84496343|ref|ZP_00995197.1| DNA recombination protein, RuvA [Janibacter sp. HTCC2649]
 gi|84383111|gb|EAP98992.1| DNA recombination protein, RuvA [Janibacter sp. HTCC2649]
          Length = 201

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +  D V+I+V GV  +++   RT   + ++G   T+     +R+D + L
Sbjct: 1   MIASLSGRVAHVGLDRVVIEVGGVGMLVHTTPRTAGEV-RMGQDVTVSTTLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  +Q+V GVG R+A+ +LS +T   +  ++   +   + +IPG+  K 
Sbjct: 60  FGFGSPSERDMFETVQTVSGVGPRLALAMLSVLTPDAVSAALRAGDLATLTKIPGVGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K    S     D++      +      +       ALV LG+   QAT A
Sbjct: 120 AERLVLELKDKVGMPSGSPGADVTP-----SAASLGDAKRDQVAEALVGLGWSAKQATDA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V SV       A  + ++R+ALR +
Sbjct: 175 VASVSAAADPEASVAALLRMALREL 199


>gi|126700422|ref|YP_001089319.1| Holliday junction DNA helicase RuvA [Clostridium difficile 630]
          Length = 203

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/202 (26%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +E +Y D ++++  G+ Y I     T+  L ++G+   ++ +  +R+D + L
Sbjct: 4   MYSYIKGTVEEIYIDSIVVENNGIGYKINVSSNTIMNL-QVGEATKIYTKLIVREDDMSL 62

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF+S  + + F LL SV  +G +VA+ +LS  +  +L   I+ ++   +++ PG+  K 
Sbjct: 63  CGFVSREELKMFELLTSVSKIGPKVALSILSFASPAQLGAYILSEDIGKLSKAPGVGKKT 122

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K    +   +  +                   ++ ALV LGY   ++  A
Sbjct: 123 AERIVLELKDKVDKNNIEFEPTLLSQKPTLIS-------QDESVDALVALGYTLSESKEA 175

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           V    K   +  +   II+ AL
Sbjct: 176 VQKCKK---DGMNTEAIIKKAL 194


>gi|51473576|ref|YP_067333.1| Holliday junction DNA helicase motor protein [Rickettsia typhi str.
           Wilmington]
 gi|81390134|sp|Q68WZ1|RUVA_RICTY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|51459888|gb|AAU03851.1| Holliday junction DNA helicase RuvA [Rickettsia typhi str.
           Wilmington]
          Length = 200

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 73/203 (35%), Positives = 114/203 (56%), Gaps = 9/203 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G I+   +DYV+IDV GV Y++Y    TL+ L + G F  LF+ETH+R++ I L
Sbjct: 1   MIGKLSGKIDSQCDDYVIIDVNGVGYLVYASGTTLAKLVE-GRFYKLFIETHVREEHIHL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++ +F LLQSV G+G ++A+ +LS +T T++  +I   +  +   I G+  K+
Sbjct: 60  YGFLTLEEKNFFNLLQSVNGIGTKMALSILSNLTPTDIKIAINNDDKNIFKAISGVGDKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
             RIM ELKGK   + S         N     I          I ALVNLG+ + +A   
Sbjct: 120 TERIMLELKGKIAKIFSSSAIIKDSSNISSVEI-------NEVIKALVNLGFTRFEAQNT 172

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           V  ++ +   I    ++I+ AL+
Sbjct: 173 VQGIITQNTKI-SIDELIKTALK 194


>gi|269956459|ref|YP_003326248.1| Holliday junction DNA helicase RuvA [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269305140|gb|ACZ30690.1| Holliday junction DNA helicase RuvA [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 207

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 64/209 (30%), Positives = 97/209 (46%), Gaps = 11/209 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +  D  +IDV GV Y+++    TL+ L + G+   LF    +R++ + L
Sbjct: 1   MIASLTGVVEHVSLDRAVIDVGGVGYLVHATPGTLAGL-RTGERARLFTTMVVREESMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           + F  D +R  F   QSV GVG R+A+ VL+  T   +  ++  Q+ K + ++PGI  K+
Sbjct: 60  YAFTDDDERALFETAQSVSGVGPRIALAVLAVHTPDAVRRAVHTQDVKALTRVPGIGPKV 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL GK                   A   +        + ALV LGY    A  A
Sbjct: 120 AQRILLELGGKLG------APTGDGAAGSGATAGTGGDQRGKVVEALVGLGYPAKTADDA 173

Query: 181 VVSVLKKEKN----IADDSQIIRLALRAI 205
           V  VL          AD +  +R  LR +
Sbjct: 174 VARVLADGGTETVADADVAATLRATLRMM 202


>gi|224476739|ref|YP_002634345.1| Holliday junction DNA helicase RuvA [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|254767387|sp|B9DNE5|RUVA_STACT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|222421346|emb|CAL28160.1| holliday junction DNA helicase [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 201

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 92/205 (44%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  L+  +V+++  GV Y I  P  +           T++    +R+D   L
Sbjct: 1   MYAYIKGKLSQLFPTHVVVETNGVGYEIQTP-NSYRFQQYYQQEVTIYTSLVVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+S+ ++  F+ L  V G+G + A+ +L+  T  E+   I  +N   + + PGI  K 
Sbjct: 60  YGFMSEEEKGMFLSLNKVTGIGPKSALAILAASTPNEVKIGIENENETYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK        +   + +N E +           A+ AL  LGY + +    
Sbjct: 120 ARQIILDLKGKVQ---ITEENPETLLNFEGSESNQTSPILDEALLALEALGYSKRELNKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +  +  +     + ++  L+ +
Sbjct: 177 EKKLQAE--SYTSVDEAVKAGLKIL 199


>gi|115380771|ref|ZP_01467652.1| holliday junction DNA helicase RuvA [Stigmatella aurantiaca
           DW4/3-1]
 gi|310823011|ref|YP_003955369.1| holliday junction ATP-dependent DNA helicase ruva [Stigmatella
           aurantiaca DW4/3-1]
 gi|115362222|gb|EAU61576.1| holliday junction DNA helicase RuvA [Stigmatella aurantiaca
           DW4/3-1]
 gi|309396083|gb|ADO73542.1| Holliday junction ATP-dependent DNA helicase RuvA [Stigmatella
           aurantiaca DW4/3-1]
          Length = 203

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 96/205 (46%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     +  +IDV GV Y +     TL  L   G    + V T +R+D   L
Sbjct: 1   MIAALRGTVAEKDLEEAIIDVAGVGYRVAFSTLTLGKLPAEGQPVHVRVRTVVREDAFEL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLS  + + F+LL SV  VG R+A+ VLS +   EL  ++       + +I G+  K 
Sbjct: 61  FGFLSKAEEEMFLLLTSVSHVGPRLALMVLSGMEVAELAVALGKGEIARLTKIHGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K   L       +  V K  + +        + +SAL+NLGY   QA  A
Sbjct: 121 AERLVLELREKVKELH------LEAVAKGASSVSVPAGPKADLVSALLNLGYKAPQAEKA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
                ++    A    + R AL+ +
Sbjct: 175 AELAGERLGPEAAFQALFREALKVL 199


>gi|297616928|ref|YP_003702087.1| Holliday junction DNA helicase RuvA [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144765|gb|ADI01522.1| Holliday junction DNA helicase RuvA [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 201

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/204 (26%), Positives = 96/204 (47%), Gaps = 10/204 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     D V +DV GV + +  P R L+ +  IG    L+      +++ R+
Sbjct: 1   MIAFLRGILVDTGTDCVYLDVNGVGFEVTVPPRVLNRVTCIGQEVFLYTYLQTLENEFRI 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + +RQ F  L S+ G+GA+  +G++S +T  EL  +++ Q+ K +  +PGI  K 
Sbjct: 61  YGFLDEDERQLFRTLLSIPGLGAKTCLGIVSSMTTEELYRAVLAQDEKSLTSVPGIGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K      +       +           S   + ISAL  LG+   +    
Sbjct: 121 AQRLIFELQNKWPKTDLIATTASENL----------RSSWTDTISALETLGFKSSELIPI 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           +  +  K +      + +R  LR 
Sbjct: 171 LSQLQAKNELGEAVEENVRKVLRL 194


>gi|157693178|ref|YP_001487640.1| Holliday junction DNA helicase RuvA [Bacillus pumilus SAFR-032]
 gi|167012657|sp|A8FFR3|RUVA_BACP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|157681936|gb|ABV63080.1| crossover junction endoribonuclease subunit A [Bacillus pumilus
           SAFR-032]
          Length = 201

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 103/205 (50%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG I+ +   YV+I+  GV Y +Y P   +  + K     T++   ++++D   L
Sbjct: 1   MIEFVKGTIDYVCPQYVVIENGGVGYQVYSPNPFIYQINK---QETIYTYHYIKEDAFSL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++  F  L +V G+G + A+ +L+      ++ +I  ++   + + PG+  K 
Sbjct: 58  YGFQTREEKALFTKLLNVTGIGPKGALAILASGDPGAVISAIEREDEAFLIKFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   +   +  ++         + +  +    A+ AL  LGYG  +    
Sbjct: 118 ARQIILDLKGKLADVVPEMIGNLFNHEDH-IQVETQQTALDEALEALSVLGYGDREIKK- 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +LK+EKN+    Q ++ AL+ +
Sbjct: 176 VYPLLKEEKNL-TTDQYVKKALQKM 199


>gi|281422792|ref|ZP_06253791.1| holliday junction DNA helicase RuvA [Prevotella copri DSM 18205]
 gi|281403160|gb|EFB33840.1| holliday junction DNA helicase RuvA [Prevotella copri DSM 18205]
          Length = 204

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 61/209 (29%), Positives = 101/209 (48%), Gaps = 10/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM----RQD 56
           MI  I G++  L     +++  GV Y +   + T + + +      L+V   +    R D
Sbjct: 1   MIEYIHGDLTELTPALAVVETAGVGYGLNISLNTYTAI-QGKQEVKLYVHEVLVTGGRDD 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              LFGF +  +R+ + LL +V GVG   A  +LS ++  EL E I   N K++  + GI
Sbjct: 60  SFTLFGFATKQERELYRLLITVSGVGGNTARMILSSLSPRELCEIISTGNDKMLKTVKGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
            +K A RI+ +LK K +SL    +   S  N     +         A+SAL  LG+    
Sbjct: 120 GLKTAQRIIIDLKDKIVSLGIADELPASGGN----VVMVNNDVKDEAVSALTMLGFSPAP 175

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           +   VV +LK + ++    Q+++LAL+ I
Sbjct: 176 SAKVVVDILKAQPDLP-VEQVVKLALKQI 203


>gi|148653226|ref|YP_001280319.1| Holliday junction DNA helicase RuvA [Psychrobacter sp. PRwf-1]
 gi|172048524|sp|A5WFC8|RUVA_PSYWF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|148572310|gb|ABQ94369.1| Holliday junction DNA helicase subunit RuvA [Psychrobacter sp.
           PRwf-1]
          Length = 210

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 61/209 (29%), Positives = 102/209 (48%), Gaps = 4/209 (1%)

Query: 1   MIGKIKGNIEGLYED-YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG I+G +  L      L+   GV Y +  P+     L ++    +L+   H+R+D   
Sbjct: 1   MIGLIEGRVCHLSAPVACLMTASGVGYEVELPLPDFCQL-QLEAMASLWTHLHVREDAQL 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL   +R  F  L  V GVGA++A+ ++S  +ATEL   I  +N   + ++PGI  K
Sbjct: 60  LYGFLHPTERDVFRQLIRVNGVGAKMALAMMSTFSATELKHCIDTENDAALTRVPGIGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ ELKGK   + S +        +      S         SAL++LGY   +A  
Sbjct: 120 TAQRLLIELKGKFDHIQSDMSLLTEVEQQIGIAANSEGVILAEVESALISLGYRDKEAQQ 179

Query: 180 AVVSVLKKEKN--IADDSQIIRLALRAIS 206
           A+ +  + +    + D   +++L L+ +S
Sbjct: 180 AIKAARETDAGQQLVDTQSLLKLTLKQLS 208


>gi|229825022|ref|ZP_04451091.1| hypothetical protein GCWU000182_00372 [Abiotrophia defectiva ATCC
           49176]
 gi|229790769|gb|EEP26883.1| hypothetical protein GCWU000182_00372 [Abiotrophia defectiva ATCC
           49176]
          Length = 204

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 102/205 (49%), Gaps = 2/205 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +EG+  + V+IDV G+      P   ++ L KI +   L    H+R+D ++L
Sbjct: 1   MIASVKGKLEGVTTESVIIDVNGLGVEAIVPTTVINLLPKIDENIKLHTYLHVREDVMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL   D  +F LL +V G+G + A+ +LS +    L  +I+ +++K I +  GI  K 
Sbjct: 61  YGFLEKEDLDFFKLLITVNGIGPKAAIAILSSMPTDILTFAILSEDTKTIQKAQGIGAKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK K   + +         +     I         A+  L  LGY Q +A  A
Sbjct: 121 AKKLVLELKDKVGIIKTPQNTGSEIYDNAALTIGINSEIKDEAVQVLTALGYSQTEAVKA 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +V  +        ++++L+L+ +
Sbjct: 181 ISTV--EMYEEMTSEELVKLSLKNL 203


>gi|237802930|ref|YP_002888124.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis
           B/Jali20/OT]
 gi|237804852|ref|YP_002889006.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231273152|emb|CAX10065.1| holliday junction DNA helicase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274164|emb|CAX10958.1| holliday junction DNA helicase [Chlamydia trachomatis B/Jali20/OT]
          Length = 200

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 98/205 (47%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIR 59
           M   IKG +  + E YV+I+  G+ Y I    R    L   +     ++V + +R+ +  
Sbjct: 1   MYEYIKGTLTHINESYVVIESFGIGYAIMLSERFSVDLRAFMHQEVLIYVHSVIRETEHV 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF S  +R+ F LL S  G+G +  + +L+     EL     L+N K IA +PGI  K
Sbjct: 61  LYGFSSRAERECFRLLISFSGIGPKTGLSILNMFPLQELCSIARLENVKAIASVPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A ++M +LK K  +L  +  ++            +  S     I AL+NLG+ +  A  
Sbjct: 121 TAEKLMVDLKQKLPTLMPLYLEEP------VVPSSTANSSFKEGIGALMNLGFSRLAADR 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +   +K+    A  ++++ +ALR 
Sbjct: 175 MMTEAVKELSEEASVAELLPIALRK 199


>gi|88808434|ref|ZP_01123944.1| putative holliday junction DNA helicase RuvA [Synechococcus sp. WH
           7805]
 gi|88787422|gb|EAR18579.1| putative holliday junction DNA helicase RuvA [Synechococcus sp. WH
           7805]
          Length = 215

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 55/213 (25%), Positives = 91/213 (42%), Gaps = 8/213 (3%)

Query: 1   MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG ++G     +E      V+I   GV Y +    R  S     G  CT +V    R+D
Sbjct: 1   MIGWLQGERIQSWEQGGRRGVVIACGGVGYEVQLTSRDQSRQMD-GTSCTFWVHQVQRED 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF    +R  F  L  V GVG ++A+ +L      ELV +I+  + K + Q  G+
Sbjct: 60  GSTLYGFCEQQERDLFRTLVGVNGVGPQMALALLDCCRVEELVAAIVDGDLKRLTQAQGV 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQA-HICSMPSFAINAISALVNLGYGQD 175
             + A RI  EL+ +  + + + +  +S V++     I    +        L  LGY   
Sbjct: 120 GKRTAERIAVELRDRLGAWAPLQEPSLSLVDRSDVKEIPLGETSLRELQITLETLGYEDL 179

Query: 176 QATTAVVSVL--KKEKNIADDSQIIRLALRAIS 206
           +   A+ +V          D    +R +L+ +S
Sbjct: 180 EIRRAMRAVATGTDVPAEDDGDAWLRASLKWLS 212


>gi|300727799|ref|ZP_07061181.1| holliday junction DNA helicase RuvA [Prevotella bryantii B14]
 gi|299774952|gb|EFI71562.1| holliday junction DNA helicase RuvA [Prevotella bryantii B14]
          Length = 205

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 59/208 (28%), Positives = 97/208 (46%), Gaps = 7/208 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM---RQDQ 57
           MI  IKG +  L     +++  GV Y +   + T S +    D      E  +   R D 
Sbjct: 1   MIEYIKGELTELTPALAVVEAAGVGYALNISLNTYSAIQGKKDVKLYVHEALVAGGRDDS 60

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
             L+GF +  +R+ + LL +V GVGA  A  +LS ++  EL   I   N K++  + GI 
Sbjct: 61  FTLYGFFTKQERELYRLLITVSGVGANTARMILSSLSPVELCTVISSGNDKMLKSVKGIG 120

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           +K A RI+ +LK K ISL    +   +  +   A           A++AL  LG+    +
Sbjct: 121 LKTAQRIIVDLKDKIISLGIATELPSNAGH---ATAIINNDVKDEAVAALTMLGFSPAPS 177

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
              V ++L    ++    Q+++LAL+ I
Sbjct: 178 AKVVTAILTDSPDMP-VEQVVKLALKQI 204


>gi|297584758|ref|YP_003700538.1| Holliday junction DNA helicase RuvA [Bacillus selenitireducens
           MLS10]
 gi|297143215|gb|ADH99972.1| Holliday junction DNA helicase RuvA [Bacillus selenitireducens
           MLS10]
          Length = 208

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 53/210 (25%), Positives = 95/210 (45%), Gaps = 9/210 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +I+G +  +  + + +DV GV Y+I+C          + +  T+F   H+R+D IRL
Sbjct: 1   MIEQIRGTLLYIETETITVDVHGVGYLIHC-GNPYRFQEWMNEELTVFTYQHVREDAIRL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  +  V G+G + A+ + +     ++V +I  ++ K + + PG+  K 
Sbjct: 60  YGFRFREERKLFEKMLQVSGIGPKGALAIATSGHPGKVVAAIESEDEKFLVKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVV-----QQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           A +++ +LKGK   L   +      Q        +    S       A+ AL  LGY   
Sbjct: 120 ARQMILDLKGKLGELLPDLNDHNEGQKPVNAVMNEREPVSDNPELDEALEALKALGYVDR 179

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           +    +  VL            IR AL+ +
Sbjct: 180 ELQK-IKPVLS--GESMTTDAYIRRALQEL 206


>gi|284032305|ref|YP_003382236.1| Holliday junction DNA helicase RuvA [Kribbella flavida DSM 17836]
 gi|283811598|gb|ADB33437.1| Holliday junction DNA helicase RuvA [Kribbella flavida DSM 17836]
          Length = 199

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 102/207 (49%), Gaps = 11/207 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D  +I+V GV   ++C   TL+ L + G    +     +R+D + L
Sbjct: 1   MIAFVRGPVAAIGVDSAVIEVGGVGMQVFCHPGTLAGL-RPGQEARVATSMVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D ++  F LL +  GVG ++A   L+ ++  +L +++  ++  ++ ++PGI  K 
Sbjct: 60  YGFADDDEKSLFELLLTASGVGPKLAQAALAVLSPDQLRQAVASEDLAMLVKVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K  + S +V             + +  ++     + LV LG+    A  A
Sbjct: 120 AQRVVLELKDKIGAPSKMVAG---------RPLQATEAWKDQVQAGLVGLGWSARDAEDA 170

Query: 181 VVSVLK-KEKNIADDSQIIRLALRAIS 206
           VV+V     +       ++R ALR +S
Sbjct: 171 VVAVSPLAAEGEPSVPDLLRAALRVLS 197


>gi|282864188|ref|ZP_06273244.1| Holliday junction DNA helicase RuvA [Streptomyces sp. ACTE]
 gi|282560675|gb|EFB66221.1| Holliday junction DNA helicase RuvA [Streptomyces sp. ACTE]
          Length = 208

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 55/212 (25%), Positives = 101/212 (47%), Gaps = 13/212 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L  +  +I+V G+   + C   TLS L ++G    L     +R+D + L
Sbjct: 1   MIAFVSGPVAALTPNTAVIEVGGIGMALQCTPGTLSGL-RVGQEARLAASLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+  +   L  ++   + K +  + GI  K 
Sbjct: 60  YGFADDDERQVFELLQTASGVGPRLAQAMLATHSPDALRIAVATGDEKALTAVSGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK +        +   + + ++        S+     +AL+ LGY   +A  A
Sbjct: 120 AQKLLLELKDRLG------EPVGAHIGQQGIGTAVSSSWRDQLQAALIGLGYATREADEA 173

Query: 181 VVSVLKK------EKNIADDSQIIRLALRAIS 206
           V +V  +      +       Q++R AL++++
Sbjct: 174 VSAVTPQAEAAVADGAQPPVPQLLRAALQSLN 205


>gi|330444140|ref|YP_004377126.1| Holliday junction DNA helicase RuvA [Chlamydophila pecorum E58]
 gi|328807250|gb|AEB41423.1| Holliday junction DNA helicase RuvA [Chlamydophila pecorum E58]
          Length = 207

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 95/205 (46%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           M   I+G +  +    V ++ QGV Y I+   R    L         ++    +++ +  
Sbjct: 1   MYDYIRGILICVRSGVVTLECQGVGYSIFVTERWGCDLIAASQKEVLIYTHAVLKETEHT 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF S  +R  F +L S  G+G + A  +L+ +   +L  ++  ++ K ++ IPGI  K
Sbjct: 61  LYGFCSREERDCFRMLISFSGIGPKFANAILNSLPIKQLCCAVHNEDVKALSSIPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A ++M +LK K  S+  +   + S     +       S   + + ALV LGY +  A  
Sbjct: 121 TAEKLMLDLKQKLPSVLPLGGGETSPWQPLEL------SHREDGVQALVGLGYSKVMAEH 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +   LK+    A  ++++ +AL+ 
Sbjct: 175 MIAEALKELPKGASLTEVLPIALKK 199


>gi|126732347|ref|ZP_01748147.1| Holliday junction DNA helicase motor protein [Sagittula stellata
           E-37]
 gi|126707216|gb|EBA06282.1| Holliday junction DNA helicase motor protein [Sagittula stellata
           E-37]
          Length = 222

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 73/220 (33%), Positives = 120/220 (54%), Gaps = 15/220 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G I    ED+VLIDV+GV Y++YC  R L+ LG+ G+F  L+ +  +R+D ++L
Sbjct: 1   MIGRIAGQIVYRGEDHVLIDVRGVGYVVYCTDRVLASLGRPGEFAALYTDLLVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++WF LL SVQGVGA+ ++ +L  + A  +  ++ L +   +    GI  K 
Sbjct: 61  FGFPTLVEKEWFRLLMSVQGVGAKASLAILGALGADGVSRALALGDWNAVKAAKGIGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS--------------FAINAISA 166
           A R++ ELK KA  + ++            A    + +                  A+SA
Sbjct: 121 AQRVVNELKDKAPMVMAMGVGASPPPPLSDAPDEVVETAARPPAAPPAPVASAQAEALSA 180

Query: 167 LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           L NLGYG  +A  AV     ++ ++ D + +IR AL+ ++
Sbjct: 181 LGNLGYGPGEAAGAVAQAAGEDGSL-DTAGLIRAALKLLA 219


>gi|166154716|ref|YP_001654834.1| Holliday junction DNA helicase motor protein [Chlamydia trachomatis
           434/Bu]
 gi|166155591|ref|YP_001653846.1| Holliday junction DNA helicase motor protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335990|ref|ZP_07224234.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis L2tet1]
 gi|229560018|sp|B0B875|RUVA_CHLT2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560020|sp|B0BCE0|RUVA_CHLTB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|165930704|emb|CAP04201.1| holliday junction DNA helicase [Chlamydia trachomatis 434/Bu]
 gi|165931579|emb|CAP07155.1| holliday junction DNA helicase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 200

 Score =  146 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 98/205 (47%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIR 59
           M   IKG +  +   YV+I+  G+ Y I    R L  L   +     ++V + +R+ +  
Sbjct: 1   MYEYIKGTLTHIDGSYVVIESFGIGYAIMLSERFLVDLRAFMHQEVLIYVHSVIRETEHV 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF S  +R+ F LL S  G+G +  + +L+     EL     L+N K IA +PGI  K
Sbjct: 61  LYGFSSRAERECFRLLISFSGIGPKTGLSILNMFPLQELCSIARLENVKAIASVPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A ++M +LK K  +L  +  ++            +  S     I AL+NLG+ +  A  
Sbjct: 121 TAEKLMVDLKQKLPTLMPLYLEEP------VVPSSTANSSFKEGIGALMNLGFSRLAADR 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +   +K+    A  ++++ +ALR 
Sbjct: 175 MMTEAVKELSEEASVAELLPIALRK 199


>gi|254976401|ref|ZP_05272873.1| Holliday junction DNA helicase RuvA [Clostridium difficile
           QCD-66c26]
 gi|255093787|ref|ZP_05323265.1| Holliday junction DNA helicase RuvA [Clostridium difficile CIP
           107932]
 gi|255315538|ref|ZP_05357121.1| Holliday junction DNA helicase RuvA [Clostridium difficile
           QCD-76w55]
 gi|255518201|ref|ZP_05385877.1| Holliday junction DNA helicase RuvA [Clostridium difficile
           QCD-97b34]
 gi|255651317|ref|ZP_05398219.1| Holliday junction DNA helicase RuvA [Clostridium difficile
           QCD-37x79]
 gi|260684381|ref|YP_003215666.1| Holliday junction DNA helicase RuvA [Clostridium difficile CD196]
 gi|260688040|ref|YP_003219174.1| Holliday junction DNA helicase RuvA [Clostridium difficile R20291]
 gi|306521149|ref|ZP_07407496.1| Holliday junction DNA helicase RuvA [Clostridium difficile
           QCD-32g58]
 gi|260210544|emb|CBA65075.1| holliday junction DNA helicase [Clostridium difficile CD196]
 gi|260214057|emb|CBE06222.1| holliday junction DNA helicase [Clostridium difficile R20291]
          Length = 200

 Score =  146 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/202 (26%), Positives = 99/202 (49%), Gaps = 11/202 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +E +Y D ++++  G+ Y I     T+  L ++G+   ++ +  +R+D + L
Sbjct: 1   MYSYIKGTVEEIYIDSIVVENNGIGYKINVSSNTIMNL-QVGEATKIYTKLIVREDDMSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF+S  + + F LL SV  +G +VA+ +LS  ++ +L   I+ ++   +++ PG+  K 
Sbjct: 60  CGFVSREELKMFELLTSVSKIGPKVALSILSFASSAQLGAYILSEDIGKLSKAPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K    +   +  +                   ++ ALV LGY   ++  A
Sbjct: 120 AERIVLELKDKVDKNNIEFEPTLLSQKPTLIS-------QDESVDALVALGYTLSESKEA 172

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           V    K   +  +   II+ AL
Sbjct: 173 VQKCKK---DGMNTEAIIKKAL 191


>gi|282892421|ref|ZP_06300771.1| hypothetical protein pah_c253o048 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497823|gb|EFB40184.1| hypothetical protein pah_c253o048 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 200

 Score =  146 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 96/205 (46%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +        +I+  G+ Y I+ P  T   L +IG    L+V   +R+    L
Sbjct: 1   MYDYIKGMLISSSPTCAVIETSGIGYKIFIPTSTFGKLAQIGQNVQLYVSFVIREQSQTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R+ F +L +V G+G + A+ ++  + +T L  +I  Q+   ++++PG+  K 
Sbjct: 61  YGFFSAEERELFEILLAVSGIGPKTAIALIGHLPSTLLSAAIQGQDITTLSKVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K       +    +                 +A++AL +LGY Q  A  A
Sbjct: 121 AERLIVELKDKLK-----IGVHPAAELVTATPFSEKSQTITDALNALTHLGYNQAIAKQA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +   LK+     D + +I   L+ I
Sbjct: 176 IQKTLKEHSTDIDLATLITSTLKHI 200


>gi|15835402|ref|NP_297161.1| Holliday junction DNA helicase motor protein [Chlamydia muridarum
           Nigg]
 gi|270285581|ref|ZP_06194975.1| Holliday junction DNA helicase RuvA [Chlamydia muridarum Nigg]
 gi|270289591|ref|ZP_06195893.1| Holliday junction DNA helicase RuvA [Chlamydia muridarum Weiss]
 gi|301336977|ref|ZP_07225179.1| Holliday junction DNA helicase RuvA [Chlamydia muridarum MopnTet14]
 gi|13431873|sp|Q9PJP0|RUVA_CHLMU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|7190816|gb|AAF39591.1| Holliday junction DNA helicase RuvA [Chlamydia muridarum Nigg]
          Length = 200

 Score =  146 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKI-GDFCTLFVETHMRQDQIR 59
           M   IKG +    E YV+I+  G+ Y I    R L  L ++      ++V + +R+ +  
Sbjct: 1   MYEYIKGKLTHTDEAYVVIESFGIGYSIMLSERFLVDLRELMHQEVLIYVHSVIRETEHS 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF S  +R+ F LL S  G+G +  + +L+     EL     L+N K IA +PGI  K
Sbjct: 61  LYGFSSRAERECFRLLISFSGIGPKTGLAILNMFPLQELCSVARLENVKAIASVPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A ++M +LK K  +L  +  ++    +       S  +     I AL+NLG+ +  A  
Sbjct: 121 TAEKLMVDLKQKLPALMPLYLEEPVVAS------SSTTTSFKEGIGALMNLGFSRLAADR 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +   +K+    A  ++++ +ALR 
Sbjct: 175 MMTEAVKELSEDASVAELLPVALRK 199


>gi|71065275|ref|YP_264002.1| Holliday junction DNA helicase RuvA [Psychrobacter arcticus 273-4]
 gi|90135656|sp|Q4FTU0|RUVA_PSYA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|71038260|gb|AAZ18568.1| Holliday junction DNA helicase subunit RuvA [Psychrobacter arcticus
           273-4]
          Length = 207

 Score =  146 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 102/205 (49%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGL-YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG I G ++ L      ++   G+ Y I  P+ +   L ++ +  +++   H+R+D   
Sbjct: 1   MIGLISGQVQYLMAPTACVMTTSGIGYDIELPLPSFCQL-RLNEQASIWTHFHVREDAQL 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF+   +R  F  L  + GVGA++A+ +LS ++A EL   +  ++   + +IPGI  K
Sbjct: 60  LYGFIDRKERDVFRQLIKINGVGAKMALAMLSAMSAAELKMHVEQESETALTRIPGIGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ ELK K  ++          +  + A I +  S       AL++LGY + +A  
Sbjct: 120 TAQRLLIELKDKLKNIEVDNSNLEFAI--QPAPISAEDSIIAEVEGALMSLGYKEKEAQQ 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
           A+ +     +  AD   +++  L+ 
Sbjct: 178 AIKAAKSNGETFADTQSLLKATLQQ 202


>gi|315498698|ref|YP_004087502.1| holliday junction DNA helicase ruva [Asticcacaulis excentricus CB
           48]
 gi|315416710|gb|ADU13351.1| Holliday junction DNA helicase RuvA [Asticcacaulis excentricus CB
           48]
          Length = 205

 Score =  146 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 67/205 (32%), Positives = 116/205 (56%), Gaps = 2/205 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +  + +D  +I+V G+ YI+ C +RTL+ L   G    L +E+  R+D  RL
Sbjct: 1   MIGRLRGILLEIEDDEAVIEVMGLGYIVKCGVRTLANLPANGQEAILHIESQTREDGTRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  +R+ F  L +VQGVG + A+ VL  +T  EL  ++  ++   + +  G+  K+
Sbjct: 61  YGFLSKDERKTFQQLLTVQGVGPKAALSVLDILTPHELAIAVAHEDKTKVNKANGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELKGKA+++          V    A   +  S    +++AL+ LG  + Q+  A
Sbjct: 121 AQRIVIELKGKALAIGEAFVPVAPGVVLASASSAASRS--GESVAALMGLGIPEAQSRQA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V + +K+    A+ + +IR +L+ I
Sbjct: 179 VEAAVKELGPEAELAAVIRASLKLI 203


>gi|93005514|ref|YP_579951.1| Holliday junction DNA helicase RuvA [Psychrobacter cryohalolentis
           K5]
 gi|123386742|sp|Q1QCY6|RUVA_PSYCK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|92393192|gb|ABE74467.1| Holliday junction DNA helicase subunit RuvA [Psychrobacter
           cryohalolentis K5]
          Length = 207

 Score =  146 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 101/205 (49%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGL-YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG I G ++ L      ++   GV Y I  P+ +   L ++ +  +++   H+R+D   
Sbjct: 1   MIGLINGQVQYLMAPTACVMTTSGVGYDIELPLPSFCQL-RLNEQASIWTHFHVREDAQL 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF+   +R  F  L  + GVGA++A+ +LS ++A EL   +   +   + +IPGI  K
Sbjct: 60  LYGFIDRKERDVFRQLIKINGVGAKMALAMLSAMSAAELKMHVEQDSEDALTRIPGIGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ ELK K  ++          +  + A I +  S       AL++LGY + +A  
Sbjct: 120 TAQRLLIELKDKLKNIEVDSSHLEFAM--QPAPISAEGSIIAEVEGALISLGYKEREAQQ 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
           A+ +     +  AD   +++  L+ 
Sbjct: 178 AIKAAKSNGETFADTQSLLKATLQQ 202


>gi|38233961|ref|NP_939728.1| Holliday junction DNA helicase motor protein [Corynebacterium
           diphtheriae NCTC 13129]
 gi|81564836|sp|Q6NGX4|RUVA_CORDI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|38200223|emb|CAE49907.1| holliday junction DNA-helicase [Corynebacterium diphtheriae]
          Length = 203

 Score =  146 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 99/205 (48%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +E +     +I+  GV Y +     TL  L + G+   +     +R++   L
Sbjct: 1   MIVSLRGTVESIGLGSAVIECNGVGYEVLAAPTTLGRLTR-GEQARVLTTMVVREESQTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D  R+ F+LLQSV G+G ++A+   S  T  ++   I   ++K + +IPG+  ++
Sbjct: 60  YGFTDDASRRMFVLLQSVSGLGPKLALAAQSVFTTEDIARHIAGGDAKALQKIPGVGKRM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K +  +  +        + Q  I    +     + ALV LG+ +  A   
Sbjct: 120 AERMIVDLKDKVVGFNDGIP----AAAQPQLSIAVDQAVQEQVLEALVGLGFSEKIALPV 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VL+    +   SQ +R AL  +
Sbjct: 176 LSRVLRDSPEL-SKSQALRAALSEL 199


>gi|78357366|ref|YP_388815.1| Holliday junction DNA helicase RuvA [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|90134880|sp|Q30YX6|RUVA_DESDG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|78219771|gb|ABB39120.1| Holliday junction DNA helicase subunit RuvA [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 201

 Score =  146 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 52/196 (26%), Positives = 95/196 (48%), Gaps = 9/196 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I+G +  + E   ++    GV Y ++ P   L+ L + G   + ++ T +R+D + 
Sbjct: 1   MIAYIEGRVAEVTEQSCVVVTQGGVGYEVHLPSHLLARLPEQGAAVSFYIHTVVREDALE 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    +RQ F++L S+  VGA+ A+ VLS     +L   +   +   + ++ GI  K
Sbjct: 61  LYGFSGWDERQTFLVLISISKVGAKTALAVLSLYRPDDLRRIVADDDVTALTRVSGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A  I+ ELK K    S      ++             S   +A+ AL NLGY +++A  
Sbjct: 121 SAQHILLELKYKLKVESLPASAGLAA--------GVPGSVLRDAVQALGNLGYAEEEAAP 172

Query: 180 AVVSVLKKEKNIADDS 195
            + ++LK++ ++    
Sbjct: 173 VLKNILKQDPDLDVSE 188


>gi|76789238|ref|YP_328324.1| Holliday junction DNA helicase motor protein [Chlamydia trachomatis
           A/HAR-13]
 gi|90134759|sp|Q3KLJ6|RUVA_CHLTA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|76167768|gb|AAX50776.1| RuvA [Chlamydia trachomatis A/HAR-13]
          Length = 200

 Score =  146 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 98/205 (47%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIR 59
           M   IKG +  + E YV+I+  G+ Y I    R    L   +     ++V + +R+ +  
Sbjct: 1   MYEYIKGTLTHINESYVVIESFGIGYAIMLSERFSVDLRAFMHQEVLIYVHSVIRETEHV 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF S  +++ F LL S  G+G +  + +L+     EL     L+N K IA +PGI  K
Sbjct: 61  LYGFSSRAEKECFRLLISFSGIGPKTGLSILNMFPLQELCSIARLENVKAIASVPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A ++M +LK K  +L  +  ++            +  S     I AL+NLG+ +  A  
Sbjct: 121 TAEKLMVDLKQKLPTLMPLYLEEP------VVPSSTANSSFKEGIGALMNLGFSRLAADR 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +   +K+    A  ++++ +ALR 
Sbjct: 175 MMTEAVKELSEEASVAELLPIALRK 199


>gi|288803240|ref|ZP_06408674.1| holliday junction DNA helicase RuvA [Prevotella melaninogenica D18]
 gi|288334281|gb|EFC72722.1| holliday junction DNA helicase RuvA [Prevotella melaninogenica D18]
          Length = 205

 Score =  146 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 57/209 (27%), Positives = 99/209 (47%), Gaps = 9/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMR----QD 56
           MI  I+G +  L     +++  GV Y +   + T S + +      L+V   +      D
Sbjct: 1   MIEYIRGELADLTPALAVVEAHGVGYALNISLNTYSAI-QGKTAVKLYVHEAIMTGGRDD 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF +  +R  + LL +V GVGA  A  +LS +T  EL   I   + K++  + GI
Sbjct: 60  NYTLYGFANKQERSLYRLLITVSGVGANTARMILSSLTPAELCNVIANGDEKMLKTVKGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
            ++ A RI+ +LK K +        D   V+ +        +    A+SAL  LG+    
Sbjct: 120 GLRTAQRIIVDLKDKIMQ---SGIADELHVSSQPNTPTVNTAIKDEAVSALTMLGFSPAP 176

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           +   VVS+L ++ ++    Q+++LAL+ I
Sbjct: 177 SAKVVVSILAEQPDLP-VEQVVKLALKMI 204


>gi|325963419|ref|YP_004241325.1| Holliday junction DNA helicase subunit RuvA [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323469506|gb|ADX73191.1| Holliday junction DNA helicase subunit RuvA [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 214

 Score =  146 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 58/208 (27%), Positives = 102/208 (49%), Gaps = 12/208 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +     +ID+ G    +    +TLS L + G+   LF    +R+D + L
Sbjct: 1   MISFLRGTVAHVGLSTAVIDLNGAGMSVNATPQTLSGL-RTGEEGQLFTSLIVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF SD +R+ F +L SV GVG R+A+ VL+      +  +    +SK   ++PGI  K+
Sbjct: 60  FGFASDDEREVFDVLLSVSGVGPRLALAVLAVHDPEAIRVAAHTGDSKTFTKVPGIGPKV 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL GK +                 A   +  S+    ++A+ +LG+ +  A+ +
Sbjct: 120 AGRIVLELAGKLV--------PQGTAGTAAAPTAAEASWKPQVVAAMTSLGWSEKDASAS 171

Query: 181 VVSVLKKEKNIA---DDSQIIRLALRAI 205
           +   L  E  ++   +  +I+R  LR +
Sbjct: 172 IDKALADEPEVSFRGNVPEILRTTLRWL 199


>gi|223044126|ref|ZP_03614165.1| holliday junction DNA helicase RuvA [Staphylococcus capitis SK14]
 gi|222442520|gb|EEE48626.1| holliday junction DNA helicase RuvA [Staphylococcus capitis SK14]
          Length = 200

 Score =  146 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 100/205 (48%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  L+  +V+++  G+ Y I  P  +      +     +F    +R+D   L
Sbjct: 1   MYAYVKGTLTQLFPTHVVVETSGIGYEIQTP-NSYRFQKYLNQDVQIFTSLIVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+S+ ++  F  L  V G+G + A+ +L+  +  E+  +I  +N   + Q PGI  K 
Sbjct: 60  YGFISEEEKDMFHSLIKVTGIGPKSALAILAASSPNEVKRAIENENDAYLTQFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK      + ++D   + +   +          A+ AL  LGY + + +  
Sbjct: 120 ARQIVLDLKGKVT----ITEEDSESLLQVDVNNNEQSQVVKEAMLALEALGYSKRELSK- 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  VL K+ +++   + ++L L+ +
Sbjct: 175 VEKVLNKQ-SVSSVDEAVKLGLQTL 198


>gi|320534404|ref|ZP_08034887.1| Holliday junction DNA helicase RuvA [Actinomyces sp. oral taxon 171
           str. F0337]
 gi|320133379|gb|EFW25844.1| Holliday junction DNA helicase RuvA [Actinomyces sp. oral taxon 171
           str. F0337]
          Length = 217

 Score =  146 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 55/212 (25%), Positives = 100/212 (47%), Gaps = 8/212 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +     +I+  GV   I     TLS L ++G+   +  E  +R+D + L
Sbjct: 1   MIASLRGTVLSVGLTGAVIETGGVGMSIQATPTTLSGL-RVGEETLVHTEMVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  L S +GVGA++A+ +L+  T   L  +I  Q+   + ++PG+  K 
Sbjct: 60  FGFADTDERDSFRTLMSAKGVGAKLALAMLAVHTPNALRRAIASQDVAALTRVPGLGPKG 119

Query: 121 ASRIMTELKGKAISLS----SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++ ++  K   ++       +        ++    S P    + ++ALV LG+ +  
Sbjct: 120 AQRVILDVADKLGPVTGDDLGAARAASGTAGGQEGAADSGPEPHADVVAALVQLGWNEAS 179

Query: 177 ATTAVVSV---LKKEKNIADDSQIIRLALRAI 205
           A  AV SV           D + ++R +LR +
Sbjct: 180 ACQAVSSVTADAAAADQDPDTAALLRASLRWL 211


>gi|218671058|ref|ZP_03520729.1| Holliday junction DNA helicase RuvA [Rhizobium etli GR56]
          Length = 197

 Score =  146 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 94/200 (47%), Positives = 139/200 (69%), Gaps = 3/200 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG I+ + EDYVL+DV GVCY+ YC  RTLS LG  G+ C LF+ET++R+DQ++L
Sbjct: 1   MIGKLKGTIDEIGEDYVLVDVHGVCYVAYCSARTLSKLGSAGEACVLFIETYVREDQLKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF++ L+R+WF LLQSVQGVGA+VA+ VLS +T  EL  +I LQ+   +++ PG+  K+
Sbjct: 61  FGFMTALEREWFNLLQSVQGVGAKVALAVLSTLTPGELANAIALQDRAAVSRAPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++TELK +A + +    + ++   K++       +   +A+SAL NLGY +DQA  A
Sbjct: 121 AMRLVTELKNRAPAFAG---EAINIALKQELGEGVAAAPVADAVSALTNLGYSRDQAANA 177

Query: 181 VVSVLKKEKNIADDSQIIRL 200
           V + +K     AD +++IRL
Sbjct: 178 VAAAMKTAGEGADSAKLIRL 197


>gi|259417974|ref|ZP_05741893.1| holliday junction DNA helicase RuvA [Silicibacter sp. TrichCH4B]
 gi|259346880|gb|EEW58694.1| holliday junction DNA helicase RuvA [Silicibacter sp. TrichCH4B]
          Length = 229

 Score =  146 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 114/227 (50%), Gaps = 22/227 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +E    D+V+IDV+GV YI+YC  RTL+ L  +G+   L+ E  +R+D ++L
Sbjct: 1   MIGKLTGRLEYRAPDHVMIDVRGVGYIVYCSDRTLASLPSVGEAVQLYTELLVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S ++++W  LL SVQGVGA+V++ +LS +    +  +I L +   +    G+  K 
Sbjct: 61  FGFTSLVEKEWHRLLTSVQGVGAKVSLAILSALGPEGVSRAIALGDWAAVKAAKGVGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA-------------- 166
           A RI+ +LK KA S+ ++       +      +   P+       A              
Sbjct: 121 AQRIVLDLKDKAPSVMAMGGTITEALEGPDLEVVVEPASDAPVKPARKAAPKAPTGAAAA 180

Query: 167 -------LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
                  L NLGY    A  AV          A ++++IR ALR ++
Sbjct: 181 SAGALSALGNLGYSPSDAAGAVAEAAADNPE-AGEAELIRAALRLLA 226


>gi|257866610|ref|ZP_05646263.1| holliday junction DNA helicase RuvA [Enterococcus casseliflavus
           EC30]
 gi|257872874|ref|ZP_05652527.1| holliday junction DNA helicase RuvA [Enterococcus casseliflavus
           EC10]
 gi|257800568|gb|EEV29596.1| holliday junction DNA helicase RuvA [Enterococcus casseliflavus
           EC30]
 gi|257807038|gb|EEV35860.1| holliday junction DNA helicase RuvA [Enterococcus casseliflavus
           EC10]
          Length = 196

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 90/205 (43%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  ++  Y++++  G+ Y I       S  GK+     +++   +R+D   L
Sbjct: 1   MYEYIIGKVTDIFPAYIVVETHGIGYQIAF-GNPYSFSGKLNQEVKIYLHQVIREDAHSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +   +Q F+ L SV G+G + A+ +++    T L+ ++   +   + + PG+  K 
Sbjct: 60  YGFATIEGKQLFLKLISVSGIGPKSALAIMANEDHTGLITAVENGDVNYLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   L                 +    +    A+ AL  LGY + +   A
Sbjct: 120 AQQMILDLKGKVAELVGEEA---------IVPLSVATTALDEAMEALKALGYSEKEVKKA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +   E       + +R ALR +
Sbjct: 171 EKQLA--ENTTKSTDEYLREALRLM 193


>gi|326575817|gb|EGE25740.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis CO72]
          Length = 204

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 64/207 (30%), Positives = 102/207 (49%), Gaps = 6/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYV-LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG I G ++ L      ++   GV Y I  PI +   L  IG    ++V  H+R+D I 
Sbjct: 1   MIGMISGQVQYLNAPIACILTSNGVGYEIELPIPSFCQL-TIGAQTAVYVHHHVREDAIN 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF+   DR  F  L  + GVGA++A+ +LS ++  E+  +I       + ++PGI  K
Sbjct: 60  LFGFMDRHDRDIFRKLIKINGVGAKMALAMLSTLSVAEIKHAIETDYDAALVRVPGIGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ +LKG+      +    M+          +         SAL+NLGY + +A  
Sbjct: 120 TAQRILLDLKGQLNEFGEM--HPMTAEGLFNQPADNSMLIIAEVESALMNLGYKEKEAQV 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           A+ +     KN  + S +++ ALR +S
Sbjct: 178 AIKNAQSDAKN--NTSDLLKAALRQLS 202


>gi|257063440|ref|YP_003143112.1| Holliday junction DNA helicase, RuvA subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256791093|gb|ACV21763.1| Holliday junction DNA helicase, RuvA subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 197

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 96/205 (46%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G + G   D   I+V GV + +  P   L+ L + G+   +     +R+D + L
Sbjct: 1   MIAFLNGRVAGHTTDTAFIEVNGVGFAVGMPASDLAKLPERGEEVLVHTYLAVREDAMAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++++F  L  V GVG +VA+  LS     EL  +I   + K ++ IPG+  K 
Sbjct: 61  YGFLTQDEKRFFEKLIGVSGVGPKVALAALSVYKPEELANAIAAGDVKAVSMIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKG           D +  +               A  AL+++G+   +A  A
Sbjct: 121 AQRMILELKGSF--------SDENMQSLFDQETAEATRRLEGAREALLSMGFSSAEADLA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +    ++      DS +I+ ALR +
Sbjct: 173 LKDAPEELH---TDSALIQYALRRL 194


>gi|308234389|ref|ZP_07665126.1| Holliday junction DNA helicase subunit RuvA [Atopobium vaginae DSM
           15829]
 gi|328944205|ref|ZP_08241669.1| crossover junction ATP-dependent DNA helicase RuvA [Atopobium
           vaginae DSM 15829]
 gi|327491124|gb|EGF22899.1| crossover junction ATP-dependent DNA helicase RuvA [Atopobium
           vaginae DSM 15829]
          Length = 214

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 54/210 (25%), Positives = 98/210 (46%), Gaps = 5/210 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDF-CTLFVETHMRQDQIR 59
           MI ++ G +  ++ + V++DVQGV Y +     T + L   G    TL V   ++++ + 
Sbjct: 1   MIVQLTGTLVEVFPNSVVLDVQGVGYELGISANTAANLPACGQTAVTLLVRMIVKENAME 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF S  +R  F  L  + GVG ++A+ VLS  + ++L    + ++   +AQ+PG+  K
Sbjct: 61  LYGFSSRQERNAFDRLIDISGVGPKLALAVLSTYSLSDLATIALSEDVTRMAQVPGVGKK 120

Query: 120 IASRIMTELKGKAISLSSV-VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
            A R++ EL       + + +                  S   +A SAL+ +G+   +  
Sbjct: 121 KAQRLLIELADVFAKDAELRILASAEQKTSGAREQAPQHSVLDDAQSALLAMGFTPQEVE 180

Query: 179 TAVVSVLKKEKNI---ADDSQIIRLALRAI 205
            A+    KKE N         +I  AL+ +
Sbjct: 181 LALKPYDKKECNDNPSLTAQTVITQALQRL 210


>gi|313901946|ref|ZP_07835363.1| Holliday junction DNA helicase RuvA [Thermaerobacter subterraneus
           DSM 13965]
 gi|313467792|gb|EFR63289.1| Holliday junction DNA helicase RuvA [Thermaerobacter subterraneus
           DSM 13965]
          Length = 221

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 56/196 (28%), Positives = 99/196 (50%), Gaps = 5/196 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G + G + D   IDV GV + +    +T   L  +G+   L     +R+DQ  L
Sbjct: 1   MIAFLRGELAGFHGDEAWIDVGGVGFRVAVSRQTQRRLPPVGEPVRLLTRLVVREDQWSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++  F  L +V GVG RVA+ VLS +T  +L  +++LQ+  ++ ++PG+  K+
Sbjct: 61  YGFATADEQAAFDALVAVSGVGPRVALSVLSVLTPEDLRRAVVLQDPALLTRVPGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP-----SFAINAISALVNLGYGQD 175
           A R++TEL+ +     +             A     P     S   +A++AL  LGY + 
Sbjct: 121 ARRLLTELRDRLGQPLAEDGAAGGPAATGTAGAVPSPGTGEASPRDDALAALEALGYSRA 180

Query: 176 QATTAVVSVLKKEKNI 191
           +A  A+ +V  + +  
Sbjct: 181 EAEGALAAVAGQVEPG 196


>gi|163840742|ref|YP_001625147.1| Holliday junction DNA helicase RuvA [Renibacterium salmoninarum
           ATCC 33209]
 gi|189045763|sp|A9WSE5|RUVA_RENSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|162954218|gb|ABY23733.1| holliday junction DNA helicase [Renibacterium salmoninarum ATCC
           33209]
          Length = 214

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 51/208 (24%), Positives = 96/208 (46%), Gaps = 14/208 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +     +IDV GV  ++    +TL  L ++G   TL     +R+D + L
Sbjct: 1   MISFLRGPVAHIGLSAAVIDVGGVGMLVQATPKTLGTL-RLGQESTLTTAMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F +L +V G+G R+ + VL+ +    +  +    + K   ++PGI  K+
Sbjct: 60  YGFADPDEREVFEILLTVSGIGPRLGLAVLAVLEPETIRVATSTGDGKTFTKVPGIGPKV 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL GK +   +V            A       +    ++A+ +LG+ +  A  +
Sbjct: 120 AGRIVLELAGKLVPHGTV----------NGAPASPSAQWKPQVVAAMTSLGWSEKDALAS 169

Query: 181 VVSVLKKEKNIAD---DSQIIRLALRAI 205
           V         +      ++I+R  LR +
Sbjct: 170 VEKATADSPELISDGNVAEILRTTLRWL 197


>gi|302345821|ref|YP_003814174.1| Holliday junction DNA helicase RuvA [Prevotella melaninogenica ATCC
           25845]
 gi|302149753|gb|ADK96015.1| Holliday junction DNA helicase RuvA [Prevotella melaninogenica ATCC
           25845]
          Length = 205

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 57/209 (27%), Positives = 99/209 (47%), Gaps = 9/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMR----QD 56
           MI  I+G +  L     +++  GV Y +   + T S + +      L+V   +      D
Sbjct: 1   MIEYIRGELADLTPALAVVEAHGVGYALNISLNTYSAI-QGKTAVKLYVHEAIMTGGRDD 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF +  +R  + LL +V GVGA  A  +LS +T  EL   I   + K++  + GI
Sbjct: 60  NYTLYGFANKQERSLYRLLITVSGVGANTARMILSSLTPAELCNVIANGDEKMLKTVKGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
            ++ A RI+ +LK K +        D   V+ +        +    A+SAL  LG+    
Sbjct: 120 GLRTAQRIIVDLKDKIMQ---SGIADELHVSSQPNTPAVNAAIKDEAVSALTMLGFSPAP 176

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           +   VVS+L ++ ++    Q+++LAL+ I
Sbjct: 177 SAKVVVSILTEQPDLP-VEQVVKLALKMI 204


>gi|62147831|emb|CAH63577.1| putative holliday junction DNA helicase RuvA [Chlamydophila abortus
           S26/3]
          Length = 222

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 100/205 (48%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQIR 59
           M   I+G +  +    ++I+ QG+ + I+ P R L  L  ++     ++  T +R+ +  
Sbjct: 16  MYDYIRGVLTYISSSTMVIESQGLGFSIFAPERWLIELSSQLHRELIVYTYTVVRETEHV 75

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  +R+ F +L S  GVG +  + +L+  + ++L      ++ K IA +PGI  K
Sbjct: 76  LYGFHTRGERECFRMLISFSGVGPKTGLAILNTFSLSQLCSIARAEDIKAIASVPGIGKK 135

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A ++M +LK K   L  +  Q ++          + PS     I AL  LGY +  A  
Sbjct: 136 TAEKLMVDLKQKLADLLPLDAQILASW------EPAKPSCMEEGIQALAALGYPKSSAER 189

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +   + +  + A  ++I+ +AL+ 
Sbjct: 190 MIAEAMSELPDHASVAEILPIALKK 214


>gi|150390102|ref|YP_001320151.1| Holliday junction DNA helicase RuvA [Alkaliphilus metalliredigens
           QYMF]
 gi|167012654|sp|A6TQM4|RUVA_ALKMQ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|149949964|gb|ABR48492.1| Holliday junction DNA helicase RuvA [Alkaliphilus metalliredigens
           QYMF]
          Length = 194

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 96/206 (46%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I     D ++++V G+ Y I   I + S + KIG   TLF    +R+D+  L
Sbjct: 1   MFEYMKGMIVEAQIDKIIVEVNGIGYRINSSINSASQV-KIGQVSTLFTHFVLREDEAHL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   +   F  L SV  +G +VA G+LS  T   L   I+  +++ IA+ PG+  K 
Sbjct: 60  YGFVDKEELAMFKKLISVSKIGPKVAAGILSTYTPQRLGAYIVSNDAQAIAKSPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K          D S V  +Q             + AL+ LGY + +   A
Sbjct: 120 AERMILELKDKI---------DDSQVEYDQNFFNHENKNNNEVVDALMALGYTKHEGEQA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
             +V           ++IR AL  ++
Sbjct: 171 ASAVR---DTSLSTEEMIRKALNWLA 193


>gi|296117790|ref|ZP_06836373.1| holliday junction DNA helicase RuvA [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295969021|gb|EFG82263.1| holliday junction DNA helicase RuvA [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 211

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 56/209 (26%), Positives = 100/209 (47%), Gaps = 4/209 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +  D+ +I+  GV Y      +TL+ L + GD   +     +++D   L
Sbjct: 1   MIASLSGEVLSIALDHAVIECGGVGYQFLATPKTLATLIR-GDHARVMTSMTVKEDARTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +D DR  F  LQ+V G+G ++A+  LS + A E+  +I   ++K +  IPG+  ++
Sbjct: 60  YGFTNDEDRAMFHQLQAVSGLGPKLAIACLSVLDAREIAVAISNGDAKKLQTIPGVGKRM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179
           + R+  ELK K  +         S     Q  +       ++  + ALV LG+ +  A  
Sbjct: 120 SERMALELKDKVNNFIGTPDASDSETTATQTGLPVGSGAIVDTVVEALVGLGFTEKAARP 179

Query: 180 AVVS--VLKKEKNIADDSQIIRLALRAIS 206
            V S     K     + + ++R +L A+S
Sbjct: 180 VVESHVAESKTPEKLETATVLRASLSALS 208


>gi|298373760|ref|ZP_06983749.1| holliday junction DNA helicase RuvA [Bacteroidetes oral taxon 274
           str. F0058]
 gi|298274812|gb|EFI16364.1| holliday junction DNA helicase RuvA [Bacteroidetes oral taxon 274
           str. F0058]
          Length = 193

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 96/205 (46%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I  L   + +++V  + Y +   + T S L    D   ++V   +R+D   L
Sbjct: 1   MIDYIKGKIVELSPAHAVVEVSDIGYHVNISLATYSELNG-KDNAKIYVYEAIREDSHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +RQ F+LL SV GVGA  A  +LS I   +L  +I   N+ ++  + GI  K 
Sbjct: 60  FGFFGRQERQLFLLLISVSGVGANTARVILSSIAIDDLQSAIQTGNAAILKSVKGIGSKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K   +                        A  A++ALV LG+ Q  A  A
Sbjct: 120 AERIIVDLKDKVSKIEISTVD----------KPVVDNVLADEAVAALVMLGFSQMPAQKA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V++    +    Q+I+ +L+ +
Sbjct: 170 VRKVIEINPQL-TIEQVIKQSLKLL 193


>gi|255311319|ref|ZP_05353889.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis 6276]
 gi|255317620|ref|ZP_05358866.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis 6276s]
 gi|296436034|gb|ADH18208.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis G/9768]
 gi|296437895|gb|ADH20056.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis G/11074]
 gi|297140395|gb|ADH97153.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis G/9301]
          Length = 200

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 97/205 (47%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIR 59
           M   IKG +  + E YV+I+  G+ Y I    R    L   +     ++V + +R+ +  
Sbjct: 1   MYEYIKGTLTHINESYVVIESFGIGYAIMLSERFSVDLRAFMHQEVLIYVHSVIRETEHV 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    +R+ F LL S  G+G +  + +L+     EL     L+N K IA +PGI  K
Sbjct: 61  LYGFSFRAERECFRLLISFSGIGPKTGLSILNMFPLQELCSIARLENVKAIASVPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A ++M +LK K  +L  +  ++            +  S     I AL+NLG+ +  A  
Sbjct: 121 TAEKLMVDLKQKLPTLMPLYLEEP------VVPSSTANSSFKEGIGALMNLGFSRLAADR 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +   +K+    A  ++++ +ALR 
Sbjct: 175 MMTEAVKELSEEASVAELLPIALRK 199


>gi|262202231|ref|YP_003273439.1| Holliday junction DNA helicase RuvA [Gordonia bronchialis DSM
           43247]
 gi|262085578|gb|ACY21546.1| Holliday junction DNA helicase RuvA [Gordonia bronchialis DSM
           43247]
          Length = 197

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 96/205 (46%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +ID  GV Y +     TLS L + G+  TL     +R+D + L
Sbjct: 1   MIASVRGPVLEVALDHAVIDCGGVGYRVLATPVTLSRL-RRGEESTLLTSMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F LLQ+V GVG R+AM  L+ +    L  ++   ++K +  +PGI  ++
Sbjct: 60  YGFTEPDARALFALLQTVTGVGPRLAMATLAVLEPEALRRALAESDTKALTSVPGIGKRV 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K                +    + +          ALV LG+    A  A
Sbjct: 120 AERLVVELRDKVDR----------PTGESAVGVVAPGGVREQVADALVGLGFTAGPAEKA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +VL    + AD S  +R +L  +
Sbjct: 170 VAAVLADHPD-ADASTALRQSLSLL 193


>gi|288924630|ref|ZP_06418567.1| holliday junction DNA helicase RuvA [Prevotella buccae D17]
 gi|315607515|ref|ZP_07882510.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella
           buccae ATCC 33574]
 gi|288338417|gb|EFC76766.1| holliday junction DNA helicase RuvA [Prevotella buccae D17]
 gi|315250698|gb|EFU30692.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella
           buccae ATCC 33574]
          Length = 205

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 62/208 (29%), Positives = 100/208 (48%), Gaps = 7/208 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE---THMRQDQ 57
           MI  IKG +  L     +I+  GV Y +   + T + +    +      E   T  R D 
Sbjct: 1   MIEYIKGELTELTPALAVIEAAGVGYALNISLNTYTAIQGKKETKLYVHEALTTGGRDDA 60

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
             L+GF S  +R  + LL +V GVGA  A  +LS ++A EL   I   N K++  + GI 
Sbjct: 61  FTLYGFFSKQERSLYRLLITVSGVGANTARMILSAMSAKELCGVISTGNDKMLKSVKGIG 120

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           +K A RI+ +LK K ISL    +   S        +    +    A+SAL  LG+    +
Sbjct: 121 LKTAQRIIVDLKDKIISLGIADELPASGG---LPSMPVDNATRDEAVSALTMLGFSPAPS 177

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
              VV++L+++ ++A    +++ AL+ I
Sbjct: 178 QKVVVAILQEQPDMA-VEMVVKEALKRI 204


>gi|257876215|ref|ZP_05655868.1| holliday junction DNA helicase RuvA [Enterococcus casseliflavus
           EC20]
 gi|325567287|ref|ZP_08143954.1| crossover junction ATP-dependent DNA helicase RuvA [Enterococcus
           casseliflavus ATCC 12755]
 gi|257810381|gb|EEV39201.1| holliday junction DNA helicase RuvA [Enterococcus casseliflavus
           EC20]
 gi|325158720|gb|EGC70866.1| crossover junction ATP-dependent DNA helicase RuvA [Enterococcus
           casseliflavus ATCC 12755]
          Length = 196

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 89/205 (43%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  ++  Y++++  G+ Y I       S  GK+     +++   +R+D   L
Sbjct: 1   MYEYIIGKVTDIFPAYIVVETHGIGYQIAF-GNPYSFSGKLNQEVKIYLHQVIREDAHSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +   +Q F+ L SV G+G + A+ +++    T L+ ++   +   + + PG+  K 
Sbjct: 60  YGFATIEGKQLFLKLISVSGIGPKSALAIMANEDHTGLITAVENGDVNYLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   L                 +    +    A+ AL  LGY + +   A
Sbjct: 120 AQQMILDLKGKVAELVGEEA---------IVPLSVATTALDEAMEALKALGYSEKEVKKA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +           + +R ALR +
Sbjct: 171 EKQLAAN--TTKSTDEYLREALRLM 193


>gi|328955749|ref|YP_004373082.1| Holliday junction DNA helicase subunit RuvA [Coriobacterium
           glomerans PW2]
 gi|328456073|gb|AEB07267.1| Holliday junction DNA helicase subunit RuvA [Coriobacterium
           glomerans PW2]
          Length = 206

 Score =  145 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 99/205 (48%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +        LIDV GV Y +     T   L + G    LF    +RQD + L
Sbjct: 1   MISQLHGTLVDSSPTSALIDVAGVGYELGISGVTAQALPQPGSDVMLFTRLQVRQDALTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L +V  +GAR+A+  LS  T +++   +  +++  +A++PG+  K 
Sbjct: 61  FGFATREERAMFDRLIAVSSIGARLALATLSTFTVSQIRVIVAQEDAARMAEVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK            D S  +   A   S  S   +A +AL+++G+   +   A
Sbjct: 121 AQRLILELKSTLEKGDLPGCADASRES--GAMSPSAGSAVDDARAALLSMGFSPQEVAVA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++  +E+ +     ++  ALR +
Sbjct: 179 LETLGDEEREMR-VESVLAGALRRL 202


>gi|229495868|ref|ZP_04389594.1| holliday junction DNA helicase RuvA [Porphyromonas endodontalis
           ATCC 35406]
 gi|229317181|gb|EEN83088.1| holliday junction DNA helicase RuvA [Porphyromonas endodontalis
           ATCC 35406]
          Length = 204

 Score =  145 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 97/205 (47%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G I+ L     L+DV GV Y I   +   + L        L++   +R+D   L
Sbjct: 6   MIAYIEGKIDRLSPTNALLDVGGVGYDINITLTDYTALQGKPS-ARLWITEIIREDAHLL 64

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+ +  R +F  L SV GVG   A  +LS  T  +L   I      ++  + GI +K 
Sbjct: 65  YGFVREESRAFFEKLCSVSGVGPSTARLILSSYTPNDLASIIGNGAVDLLKNVKGIGLKT 124

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LKGK      +   D+S    E  +   + + +  A  AL  LG+ +     A
Sbjct: 125 AQRIVVDLKGKI----DLSAYDLSEGMPEGGNAPEVAAVSDEAQRALKMLGFPEAAIRKA 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +VL  + ++    ++I+ AL+ +
Sbjct: 181 VKAVLGADAHLP-VEEVIKQALKRL 204


>gi|260591290|ref|ZP_05856748.1| holliday junction DNA helicase RuvA [Prevotella veroralis F0319]
 gi|260536656|gb|EEX19273.1| holliday junction DNA helicase RuvA [Prevotella veroralis F0319]
          Length = 205

 Score =  145 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 58/209 (27%), Positives = 97/209 (46%), Gaps = 9/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMR----QD 56
           MI  IKG +  L     +++  GV Y +   + T S + +      L+V   +      D
Sbjct: 1   MIEYIKGELAELTPAMAVVEAHGVGYALNISLNTYSAI-QGKTAVKLYVHEAIMTGGRDD 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF +  +R  + LL +V GVGA  A  +LS +T  EL   I   + K++  + GI
Sbjct: 60  NYTLYGFANKQERALYRLLITVSGVGANTARMILSSLTPAELCNVIANGDEKMLKTVKGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
            ++ A RI+ +LK K +        D   V+               A+SAL  LG+    
Sbjct: 120 GLRTAQRIIVDLKDKIMQ---SGIADELHVSNTPGTPAVDAGIKDEAVSALTMLGFSPAP 176

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           +   VVS+L ++ ++    Q+++LAL+ I
Sbjct: 177 SAKVVVSILTEQPDLP-VEQVVKLALKMI 204


>gi|320334037|ref|YP_004170748.1| Holliday junction ATP-dependent DNA helicase ruvA [Deinococcus
           maricopensis DSM 21211]
 gi|319755326|gb|ADV67083.1| Holliday junction ATP-dependent DNA helicase ruvA [Deinococcus
           maricopensis DSM 21211]
          Length = 200

 Score =  145 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 52/204 (25%), Positives = 96/204 (47%), Gaps = 9/204 (4%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           I  + G +  + +   +I   GV Y + CP  TL+ L ++ D   L     +R+D   L+
Sbjct: 5   IAYLTGTVRDVRDTSAVIVAGGVGYEVLCPAPTLAKL-RVNDTAELHTRMVVREDAWTLY 63

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF      + F LL SV GVG ++ + +LS +    +   I+  +SK++A + G+  K A
Sbjct: 64  GFQDQDSIRLFDLLTSVTGVGPKLGLALLSAMPPHVIAGGILGSDSKLLASVSGVGKKTA 123

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
            R++ EL+ K         + ++  +          +   +A+ AL+ LG+ + Q    +
Sbjct: 124 ERLVLELQNKV-------PEHLAAASGRTTAPVVNSTVGQDAVEALLALGFREAQVRAVI 176

Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205
             +L  + N A   Q+IR +L  +
Sbjct: 177 SELLSADPN-ATADQLIRKSLGRL 199


>gi|89898693|ref|YP_515803.1| Holliday junction DNA helicase RuvA [Chlamydophila felis Fe/C-56]
 gi|123749524|sp|Q252Y0|RUVA_CHLFF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|89332065|dbj|BAE81658.1| holliday junction DNA helicase [Chlamydophila felis Fe/C-56]
          Length = 207

 Score =  145 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 97/205 (47%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKI-GDFCTLFVETHMRQDQIR 59
           M   I+G +  +    ++I+ QG+ + I    R L  L  +      ++  T +R+ +  
Sbjct: 1   MYDYIRGILTYMSSGTMVIECQGLGFSICASDRWLMELAGLLHREVIVYTYTVVRETEHV 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF S  +R+ F +L S  GVG +  + +L+    ++L      ++ K +A +PGI  K
Sbjct: 61  LYGFRSRGERECFRMLISFSGVGPKTGLAILNTFALSKLCSIARAEDVKALASVPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A ++M +LK K   L  +  Q ++          + PS   + I AL  LGY +  A  
Sbjct: 121 TAEKLMVDLKQKLPELLPLDSQTLTSW------KPAKPSCMEDGIQALAALGYPKSSAER 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +   + +  + A  ++I+ +AL+ 
Sbjct: 175 MIAEAITELPDNASLAEILPIALKK 199


>gi|327314021|ref|YP_004329458.1| Holliday junction DNA helicase RuvA [Prevotella denticola F0289]
 gi|326944672|gb|AEA20557.1| Holliday junction DNA helicase RuvA [Prevotella denticola F0289]
          Length = 205

 Score =  145 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 59/209 (28%), Positives = 99/209 (47%), Gaps = 9/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMR----QD 56
           MI  I+G +  L     +++ QGV Y +   + T S +        L+V   +      D
Sbjct: 1   MIEYIRGELADLTPALAVVEAQGVGYALNISLNTYSAIQGR-TPVKLYVHEAIMTGGRDD 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF S  +R  + LL +V GVGA +A  +LS +T  EL   I   + K++  + GI
Sbjct: 60  SYTLYGFASRQERSLYRLLITVSGVGANIARMILSSLTPAELCNVIANGDEKMLKTVRGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
            ++ A RI+ +LK K +        D   V+ +        +    A+SAL  LG+    
Sbjct: 120 GLRTAQRIIVDLKDKIMQSGI---ADELHVSSQPGTPAVNTAIKDEAVSALTMLGFSPAP 176

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           +   VVS+L  + ++    Q+++LAL+ I
Sbjct: 177 SAKVVVSILTDQPDLP-VEQVVKLALKMI 204


>gi|300781059|ref|ZP_07090913.1| crossover junction ATP-dependent DNA helicase RuvA [Corynebacterium
           genitalium ATCC 33030]
 gi|300532766|gb|EFK53827.1| crossover junction ATP-dependent DNA helicase RuvA [Corynebacterium
           genitalium ATCC 33030]
          Length = 207

 Score =  145 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 100/206 (48%), Gaps = 3/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +  D+ +I+  GV Y    P  TL+ L + G+   +     +R+D + L
Sbjct: 1   MIDSLNGEVISIGLDHAVIECAGVGYRFLAPPPTLARLVR-GETTRVLTTLVVREDDMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D  R  F  L +V G+G ++A+  LS  T  EL   I   ++K I  IPG+  K+
Sbjct: 60  YGFTDDDARSMFHRLTAVSGLGPKLAIAALSVFTPGELAAHITSGDAKTIQSIPGVGKKM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179
           A R++ ELK K   L     Q  +     +    S  SFA    + ALV LG+ +  +  
Sbjct: 120 ADRMVLELKDKLQGLYPGAAQSEAPEAAGEVPPISGSSFATEQVVEALVGLGFPEK-SAR 178

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
           A V  +  E + A+ S ++R AL  +
Sbjct: 179 AAVDAVAAENDGAESSVLLRAALNRL 204


>gi|163814140|ref|ZP_02205532.1| hypothetical protein COPEUT_00294 [Coprococcus eutactus ATCC 27759]
 gi|158450589|gb|EDP27584.1| hypothetical protein COPEUT_00294 [Coprococcus eutactus ATCC 27759]
          Length = 208

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 58/209 (27%), Positives = 100/209 (47%), Gaps = 6/209 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G +E    + ++++  G+ Y +    + ++ L  +     +F    +R+D+I L
Sbjct: 1   MISYITGTLEYQSGNSIVVECGGIGYSMMISGQFMNRLPAMHSHIKVFTYMSVREDEISL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    + + F +L SV GVG + AM +LS +T  EL  +++ ++ K I +  GI  K 
Sbjct: 61  YGFYDRDELEVFKVLLSVNGVGPKAAMSILSALTVNELRLAVVSEDVKAITRANGIGTKG 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN----KEQAHICSMPSFAINAISALVNLGYGQDQ 176
           ASRI+ ELK K      +       +N           S      N ++AL  LGY   +
Sbjct: 121 ASRIILELKDKLRLEDMIDAAYEDAMNGSRVGSGGVAQSDIDTRANVVAALTALGYSGVE 180

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A  AV  V  +     D+ Q+++ +L+ I
Sbjct: 181 AGRAVNRV--EGWQDMDEEQLLKASLKNI 207


>gi|323698439|ref|ZP_08110351.1| Holliday junction DNA helicase RuvA [Desulfovibrio sp. ND132]
 gi|323458371|gb|EGB14236.1| Holliday junction DNA helicase RuvA [Desulfovibrio desulfuricans
           ND132]
          Length = 206

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 6/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG + G +    E  +++    GV Y +  P   L+ L   G    LFV T + +  I 
Sbjct: 1   MIGYLLGELLSADEKGLVLLTPGGVGYEVAAPTSVLAKLPGRGQEVRLFVHTQVGEKAID 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGFL+  D   F  L S+  +G + AM +LS   A  L E    ++   ++ +PGI  K
Sbjct: 61  LFGFLTADDLDLFRTLISLDKLGPKKAMAILSMFDAAHLREIAFREDVNTLSTVPGIGPK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +I+  LK K   L  V  +  +     Q          ++A++ L  LGYG+D+   
Sbjct: 121 SAKQILWNLKDKVDKLKPVTGRGSAADQGRQGPQGE----YLDALAGLKGLGYGEDEIRP 176

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
            ++    +E ++ D +  IR  L+ I+
Sbjct: 177 MLIETFDEEPDL-DAAGAIRAVLKKIN 202


>gi|161501897|ref|YP_219549.2| Holliday junction DNA helicase motor protein [Chlamydophila abortus
           S26/3]
 gi|90134722|sp|Q5L6Z3|RUVA_CHLAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
          Length = 207

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 100/205 (48%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQIR 59
           M   I+G +  +    ++I+ QG+ + I+ P R L  L  ++     ++  T +R+ +  
Sbjct: 1   MYDYIRGVLTYISSSTMVIESQGLGFSIFAPERWLIELSSQLHRELIVYTYTVVRETEHV 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  +R+ F +L S  GVG +  + +L+  + ++L      ++ K IA +PGI  K
Sbjct: 61  LYGFHTRGERECFRMLISFSGVGPKTGLAILNTFSLSQLCSIARAEDIKAIASVPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A ++M +LK K   L  +  Q ++          + PS     I AL  LGY +  A  
Sbjct: 121 TAEKLMVDLKQKLADLLPLDAQILASW------EPAKPSCMEEGIQALAALGYPKSSAER 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +   + +  + A  ++I+ +AL+ 
Sbjct: 175 MIAEAMSELPDHASVAEILPIALKK 199


>gi|210622015|ref|ZP_03292958.1| hypothetical protein CLOHIR_00904 [Clostridium hiranonis DSM 13275]
 gi|210154460|gb|EEA85466.1| hypothetical protein CLOHIR_00904 [Clostridium hiranonis DSM 13275]
          Length = 200

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 96/205 (46%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG IE +  D + ID   + Y I     T +   ++G+   +F +  +R+D++ L
Sbjct: 1   MYRYIKGTIEEIGFDSITIDNNDIGYSILVSSNTAAQ-YQVGEKAKVFTKLIVREDEMFL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF S+ +R  F +L S+  +G +V + +LS  T  +L   I+ ++   I++ PG+  K 
Sbjct: 60  CGFHSEEERNMFDMLTSISKIGPKVGLSILSFATPKQLGAYILSEDIAKISKAPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K        +  +                   ++ AL+ LGY Q +A  A
Sbjct: 120 AERIILELKDKIDKTQIEFEPTL-------LEAQPAAISIDESVDALIALGYTQAEAKEA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V      +K   +  +IIR +L  +
Sbjct: 173 VKK---TKKPGMETEEIIRKSLTYL 194


>gi|311739557|ref|ZP_07713392.1| crossover junction ATP-dependent DNA helicase RuvA [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311305373|gb|EFQ81441.1| crossover junction ATP-dependent DNA helicase RuvA [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 205

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +ID  GV Y      +TL  L + G+  T+     +++D + L
Sbjct: 1   MIAALRGEVIHIGLDHGVIDCAGVGYKFLATPKTLGTL-RRGEQATVLTNLVVKEDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +D DR+ F +LQSV G+G ++A+  LS + A EL  +I  ++ K +  IPG+  ++
Sbjct: 60  YGFSADEDREMFHVLQSVSGLGPKLALAALSVMGAGELAAAIGGEDVKALQSIPGVGKRM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+  ELK K  + +         V+   A   +  +   +   AL+ LG+    A   
Sbjct: 120 AQRLALELKDKVAAFAPSEAAAAGSVDT--AVAPAGGAVVESVTEALIGLGFTDKGARPV 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V S      + AD S ++R AL  +
Sbjct: 178 VESAYADNPD-ADTSSLLRAALAQL 201


>gi|313847675|emb|CBY16663.1| putative holliday junction DNA helicase RuvA [Chlamydophila
           psittaci RD1]
          Length = 222

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 99/205 (48%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQIR 59
           M   I+G +  +    ++++ QG+ + I+ P R L  L  ++     ++  T +R+ +  
Sbjct: 16  MYDYIRGVLTYISSGTMVVESQGLGFSIFAPDRWLMELSSQLHRELIVYTYTVVRETEHV 75

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  +R+ F +L S  GVG +  + +L+  + ++L      ++ K IA +PGI  K
Sbjct: 76  LYGFNTRGERECFRMLISFSGVGPKTGLAILNTFSLSKLCSIARAEDIKAIASVPGIGKK 135

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A ++M +LK K   L  +  Q  +          + PS     I AL  LGY +  A  
Sbjct: 136 TAEKLMVDLKQKLADLLPLDSQITASWG------PAKPSCMEEGIQALAALGYPKSSAER 189

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +   + +  + A  ++I+ +AL+ 
Sbjct: 190 MIAEAMSELPDHASIAEILPIALKK 214


>gi|253581541|ref|ZP_04858766.1| holliday junction DNA helicase ruvA [Fusobacterium varium ATCC
           27725]
 gi|251836611|gb|EES65146.1| holliday junction DNA helicase ruvA [Fusobacterium varium ATCC
           27725]
          Length = 198

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 46/204 (22%), Positives = 95/204 (46%), Gaps = 9/204 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G +E    DY+ +DV GV Y +   +RT   +   G+   L++  ++++D  +L
Sbjct: 1   MYEYLRGKVEYKKPDYLALDVNGVGYKVNISLRTYDFINA-GEEVKLYIYNYIKEDAFKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GFL + +R  F +L  V+G+G  +A+ V+S      + + +   +   + ++P +  K 
Sbjct: 60  IGFLEERERNLFEMLLGVKGIGVSLALSVMSTFDIDTIRDLVATDDYNNLKRVPKLGEKK 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           + +++ +LK K  +L      D   ++                ISAL  LGY + +  T 
Sbjct: 120 SQQLILDLKSKLKTL------DALSIDTRNDDAARHLMIEEELISALEGLGYSKKEINTL 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           +    ++ K+     + I+  L+ 
Sbjct: 174 ITR--EELKSFKTIEEAIKGVLKK 195


>gi|68536132|ref|YP_250837.1| holliday junction DNA helicase [Corynebacterium jeikeium K411]
 gi|90134845|sp|Q4JVD8|RUVA_CORJK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|68263731|emb|CAI37219.1| holliday junction DNA helicase [Corynebacterium jeikeium K411]
          Length = 211

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 60/211 (28%), Positives = 99/211 (46%), Gaps = 7/211 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     DYV I+  GV Y       T++ L + G+   +     +R+D   L
Sbjct: 1   MIASLRGTVIDKGLDYVTIECAGVGYQCSGTATTIAELPR-GEEVFVTTALVVREDSQTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           + F    +++ F  LQSV GVGAR+A+ +LS IT  EL  ++   + K + + PG+  ++
Sbjct: 60  YVFKDADEKRAFATLQSVSGVGARLALAILSVITPQELARAVSNGDHKTLQRAPGVGKRL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI----CSMPSFAINAISALVNLGYGQDQ 176
           A R+  +LKGK   L  +                      P      + ALV LG+ + +
Sbjct: 120 AERMAVDLKGKVADLGEIADTGAVGAAGAVGDGGDGQAVAPDVREQVLEALVGLGFTESK 179

Query: 177 ATTAVVSVLKK--EKNIADDSQIIRLALRAI 205
           A T + +VL +       D S ++R +L AI
Sbjct: 180 AGTTIEAVLSQWSAPQAPDASGLLRASLAAI 210


>gi|256832601|ref|YP_003161328.1| Holliday junction DNA helicase RuvA [Jonesia denitrificans DSM
           20603]
 gi|256686132|gb|ACV09025.1| Holliday junction DNA helicase RuvA [Jonesia denitrificans DSM
           20603]
          Length = 205

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 60/209 (28%), Positives = 100/209 (47%), Gaps = 13/209 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G ++ +  D  ++ V GV Y++Y    TL+ L + G   TL+    +R+D + L
Sbjct: 1   MIAQLTGIVQKIRLDSAILTVHGVGYLVYATPATLATL-REGQDATLWTSLVVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F  +Q+V GVG R+A+ +L+   A  L  +++  + K + ++PGI  K+
Sbjct: 60  FGFTDFDERDVFETVQTVSGVGPRLALAMLAIHPAQALRTAVVHADIKALTKVPGIGPKV 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL  +     S   Q  +   +  A            I AL++LG+   QA  A
Sbjct: 120 AQRIVLELSNRMTPPQSETTQTPTTPTEHDAS--------EQVIDALMSLGWNTKQAENA 171

Query: 181 VVSVLKKEKN----IADDSQIIRLALRAI 205
           V  V           A     +R AL+ +
Sbjct: 172 VDQVRADTGQPIITPAQVPATLRAALKIL 200


>gi|261418393|ref|YP_003252075.1| Holliday junction DNA helicase RuvA [Geobacillus sp. Y412MC61]
 gi|319767648|ref|YP_004133149.1| Holliday junction DNA helicase RuvA [Geobacillus sp. Y412MC52]
 gi|261374850|gb|ACX77593.1| Holliday junction DNA helicase RuvA [Geobacillus sp. Y412MC61]
 gi|317112514|gb|ADU95006.1| Holliday junction DNA helicase RuvA [Geobacillus sp. Y412MC52]
          Length = 194

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 93/205 (45%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G ++ +  +Y++ID  G+ Y I+ P    +         T++   ++R+    L
Sbjct: 1   MIEFIRGYVDYVCPEYIVIDHNGIGYEIFTP-NPFAFQESREAAVTVYTYEYVREGVHAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+G +  + +L+     EL  +I  +N   + + PG+  K 
Sbjct: 60  YGFPTREERNLFAKLLQVSGIGPKGGLAILAAGRPDELARAIEEENEAFLCKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK  +L++                  +      A++AL  LGY + +    
Sbjct: 120 ARQMILDLKGKLGALAAPAA---------ARSAAPLSGALAEAVAALKALGYAEREIEKI 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++ K+        Q ++ AL  +
Sbjct: 171 IPALRKE---AMSTEQYVKRALALL 192


>gi|73662426|ref|YP_301207.1| Holliday junction DNA helicase RuvA [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|90135921|sp|Q49Y80|RUVA_STAS1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|72494941|dbj|BAE18262.1| Holliday junction DNA helicase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 200

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 91/205 (44%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  L   +V+++  GV Y I  P  +      +     +     +R+D   L
Sbjct: 1   MYAYIKGTLTELNPTHVVVEASGVGYEIQTP-NSYRFQKYMDHEVVVHTSLIVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  ++  F+ L  V G+G + A+ +L+  +  ++  +I  +N   + + PGI  K 
Sbjct: 60  YGFINQEEKDMFLSLIKVTGIGPKSALAILASSSPNDVKIAIENENDAYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK      +   D S +        +       A+ AL  LGY + + T  
Sbjct: 120 ARQIVLDLKGKVQ----INDVDSSQILNTDTQDHANAPIIKEALLALEALGYSKRELTKV 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             S+ K+  +       ++  L+ +
Sbjct: 176 EKSLSKETFD--SVDDAVKRGLQLL 198


>gi|260578827|ref|ZP_05846734.1| Holliday junction DNA helicase RuvA [Corynebacterium jeikeium ATCC
           43734]
 gi|258603125|gb|EEW16395.1| Holliday junction DNA helicase RuvA [Corynebacterium jeikeium ATCC
           43734]
          Length = 211

 Score =  144 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 60/211 (28%), Positives = 99/211 (46%), Gaps = 7/211 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     DYV I+  GV Y       T++ L + G+   +     +R+D   L
Sbjct: 1   MIASLRGTVIDKGLDYVTIECAGVGYQCSGTATTIAELPR-GEEVFVTTALVVREDSQTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           + F    +++ F  LQSV GVGAR+A+ +LS IT  EL  ++   + K + + PG+  ++
Sbjct: 60  YVFKDADEKRAFATLQSVSGVGARLALAILSVITPQELARAVSNGDHKTLQKAPGVGKRL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI----CSMPSFAINAISALVNLGYGQDQ 176
           A R+  +LKGK   L  +                      P      + ALV LG+ + +
Sbjct: 120 AERMAVDLKGKVADLGEIADTGAVGAAGAVGDGGDGQAVAPDVREQVLEALVGLGFTESK 179

Query: 177 ATTAVVSVLKK--EKNIADDSQIIRLALRAI 205
           A T + +VL +       D S ++R +L AI
Sbjct: 180 AGTTIEAVLSQWSAPQAPDASGLLRASLAAI 210


>gi|188994697|ref|YP_001928949.1| Holliday junction DNA helicase RuvA [Porphyromonas gingivalis ATCC
           33277]
 gi|229560115|sp|B2RJ07|RUVA_PORG3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|188594377|dbj|BAG33352.1| probable Holliday junction DNA helicase RuvA [Porphyromonas
           gingivalis ATCC 33277]
          Length = 202

 Score =  144 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 94/205 (45%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG I GL    ++I+  GV Y +   + T S      +      +  +R+D   L
Sbjct: 1   MIEYLKGAIVGLTPTNLVIECAGVGYDVNVSLTTYSAYQGKKEGLIWITQL-IREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L SV GVG   A  +LS     EL   I    +  +  + GI +K 
Sbjct: 60  YGFSTKEERTLFGQLTSVSGVGPTTARLILSSYAPQELAALITTGQADALKAVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LKGK   L +   + +S          +  +    AISAL  LG+       A
Sbjct: 120 AQRIIVDLKGKI-QLETSSDEILSARTAVGDAALNTIASGEEAISALKMLGFADPAIRKA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V S+L ++ ++A    II+ ALR +
Sbjct: 179 VKSILSEDSSLA-VEDIIKRALRML 202


>gi|328950866|ref|YP_004368201.1| Holliday junction ATP-dependent DNA helicase ruvA [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451190|gb|AEB12091.1| Holliday junction ATP-dependent DNA helicase ruvA [Marinithermus
           hydrothermalis DSM 14884]
          Length = 201

 Score =  144 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 98/204 (48%), Gaps = 13/204 (6%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           I  ++G +    ED  +I   G+ + ++CP  TL  L + G+   L     +R+D   L+
Sbjct: 10  IRFLQGRLVDKREDRAVILTGGIGFEVWCPTPTLETL-REGEEVALHTRLVVREDGFTLY 68

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF   +  + F LL SV GVG RVA+G+L+ +  + L  ++   ++K +   PG+  ++A
Sbjct: 69  GFHDPVYLELFDLLTSVSGVGPRVALGMLAALPPSLLGRAVAEGDAKALTAAPGVGKRLA 128

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
            RI+ EL+ K  +  +                      A  AI AL  LG+ + Q  T V
Sbjct: 129 ERIVLELRHKIPAHLTAGGG-----------AHRANPNAHEAIEALAALGFREAQVRTVV 177

Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205
            ++  ++   A   ++IR ALR +
Sbjct: 178 GTLAAQDPE-APVEELIRRALRQL 200


>gi|300088237|ref|YP_003758759.1| Holliday junction DNA helicase RuvA [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527970|gb|ADJ26438.1| Holliday junction DNA helicase RuvA [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 195

 Score =  144 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 101/206 (49%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG    L  D+V+++V GV Y ++    TLS +   G+   L+    +R+D + L
Sbjct: 1   MISTLKGKAALLGADWVIVEVGGVGYKVFVSTATLSQIQNAGE-IRLYTHLQVREDALTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  +   F  +  V G+GAR+A+ +LS     +L   I   N+ ++  +PG+  K 
Sbjct: 60  FGFLTFEELGIFETMLEVSGIGARLALALLSAFKPEDLANIIATGNADMLCTVPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ ELK K               N   A      +   + ++AL  LGY   +A  A
Sbjct: 120 ASRIVLELKDKVAR------------NWSAAPAGEGGAVDNDVMAALTALGYSGAEAARA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           VV++ +  K      + IRLAL  +S
Sbjct: 168 VVALPRDGK--LTLEEKIRLALAGLS 191


>gi|90962101|ref|YP_536017.1| Holliday junction DNA helicase RuvA [Lactobacillus salivarius
           UCC118]
 gi|227891123|ref|ZP_04008928.1| Holliday junction DNA helicase [Lactobacillus salivarius ATCC
           11741]
 gi|123391344|sp|Q1WT17|RUVA_LACS1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|90821295|gb|ABD99934.1| Holliday junction DNA helicase [Lactobacillus salivarius UCC118]
 gi|227866997|gb|EEJ74418.1| Holliday junction DNA helicase [Lactobacillus salivarius ATCC
           11741]
          Length = 201

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 91/205 (44%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G I  +   Y+++DV GV Y +Y                 +FV   +R + I L
Sbjct: 1   MYEYLRGVITEVTPYYIVVDVNGVGYQVYV-ANPFKYEEDEHAEQKVFVYQAVRDNDISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++Q F+ L  V G+G + A+ +L+      L+ +I   +   + + PGI  K 
Sbjct: 60  YGFKNSSEKQLFLKLLDVSGIGPKSALAILANDDNRGLINAINSDDDGYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   + S +   ++  +     + +   +   ++ AL  LGY + +    
Sbjct: 120 AKQIILDLKGKLSDVDSDM---LTGQDNLDLDLNASSPYLKESLEALRALGYTKTEVKRI 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              + K +         +R  LR +
Sbjct: 177 SKKLEKYDG--KSTDDYLRQGLRLL 199


>gi|237738311|ref|ZP_04568792.1| holliday junction DNA helicase ruvA [Fusobacterium mortiferum ATCC
           9817]
 gi|229420191|gb|EEO35238.1| holliday junction DNA helicase ruvA [Fusobacterium mortiferum ATCC
           9817]
          Length = 196

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 95/204 (46%), Gaps = 11/204 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +E    DY+ +DV GV Y +   +R    + K G+   L++  ++++D  +L
Sbjct: 1   MFEYLKGKVEYKKPDYLALDVNGVGYKVNISLRVYDKI-KTGESVRLYIFNYIKEDAFKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GFL + +R  F +L  V+GVG  + + ++S     +L + +   +   + ++P +  K 
Sbjct: 60  IGFLEERERNLFEMLLGVKGVGVSLTLSIMSTFDVEQLRKIVAENDYATLKRVPKLGEKK 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK  ++ ++  QD +                     AL  LGY Q +  + 
Sbjct: 120 AQQVILDLKGKLKAIGNLFTQDENLFESFA--------IEDELYEALEALGYSQKEINSL 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V    ++ +      + I+  L+ 
Sbjct: 172 VSK--EEIRGFTSIEEAIKCVLKK 193


>gi|322412854|gb|EFY03762.1| Holliday junction DNA helicase RuvA [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 197

 Score =  144 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 91/205 (44%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ YII       S    +    T+++   +R+D   L
Sbjct: 1   MYDYIKGQLTKITAKYIVVETNGLGYIINV-ANPYSFTDSVNQLVTIYLHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNQGLVNAIDTSDIKYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK + +           +K Q    S       AI AL+ LGY   +    
Sbjct: 120 AQQMVLDLAGKFVEVPQE-------TSKAQPSTSSNNDELDEAIEALLALGYKATELKK- 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +    E       Q I+ AL+ +
Sbjct: 172 IRAFF--EGTSETAEQYIKSALKLL 194


>gi|119961641|ref|YP_948037.1| Holliday junction DNA helicase RuvA [Arthrobacter aurescens TC1]
 gi|119948500|gb|ABM07411.1| Holliday junction DNA helicase RuvA [Arthrobacter aurescens TC1]
          Length = 231

 Score =  144 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 97/207 (46%), Gaps = 12/207 (5%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           I  ++G +  +     +ID+ G    +Y   +TLS L K G    LF    +R+D + LF
Sbjct: 19  ISFLRGTVAHVGLSTAVIDLNGAGMSVYATPQTLSHL-KTGSEAKLFTSMIVREDSLTLF 77

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF  D +R+ F +L SV GVG R+A+ VL+      +  +    +SK   ++PGI  K+A
Sbjct: 78  GFADDDEREVFDVLLSVSGVGPRLALAVLAVHEPEAIRVAAHTGDSKTFTKVPGIGPKVA 137

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
            RI+ EL GK +   +      +              +    ++A+ +LG+ +  A  ++
Sbjct: 138 GRIVLELAGKLVPHGTSTGTAPAA--------APNAEWKPQVVAAMTSLGWSEKDANGSI 189

Query: 182 VSVLKKEKNIAD---DSQIIRLALRAI 205
              +     + D    +QI+R  LR +
Sbjct: 190 DKAMADSPELVDAGNVAQILRATLRWL 216


>gi|295102071|emb|CBK99616.1| Holliday junction DNA helicase subunit RuvA [Faecalibacterium
           prausnitzii L2-6]
          Length = 203

 Score =  144 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 96/206 (46%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G I     + V+I   GV Y   CP      L  +G+  T++   ++ ++ + L
Sbjct: 1   MIYSLTGKIIKKTLNAVVICCGGVGYYAQCPASVAGALPGVGNEATIYTVMNVTENDVSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+  +  F LL SV GVGA+V + +LS +    +  +I   + K      G+  K+
Sbjct: 61  YGFASEEQQACFELLTSVSGVGAKVGLAILSVMEPDRVALAISAGDHKAFKAASGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K     +      +          +  +     I+ALV+LGY Q +A  A
Sbjct: 121 AQRIVLELKDKVAKGFAAGIDLENVAGAASDTAAAQGAGQA--IAALVSLGYSQSEAALA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  +           +II+LALR+++
Sbjct: 179 VSKIDGTLP----VEEIIKLALRSMA 200


>gi|323143601|ref|ZP_08078278.1| Holliday junction DNA helicase RuvA [Succinatimonas hippei YIT
           12066]
 gi|322416664|gb|EFY07321.1| Holliday junction DNA helicase RuvA [Succinatimonas hippei YIT
           12066]
          Length = 207

 Score =  144 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 64/207 (30%), Positives = 103/207 (49%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M G ++G +  +    VLI+V GV Y +  P+ +L+ +  + +   ++V   +R+D   L
Sbjct: 1   MFGSLRGKVLRIDGVTVLIEVGGVGYEVEMPVTSLAKI-SVNEEEFIYVHHVVREDDELL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    DR  F  L  V GVG ++A+ VLS   A + + ++    +  + Q+PG+  K 
Sbjct: 60  YGFCDLSDRTLFRELIKVNGVGPKLALAVLSSFNAHDFIAAVTSGRTGALTQVPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA-INAISALVNLGYGQDQATT 179
           A R+M ELK +   L        + ++K       + + A   A+SAL+ LGY +  A  
Sbjct: 120 AERLMVELKDRLDKLPLSDTVSTADLSKVNGMAAVVGNIAVDEAVSALIGLGYKEALAFE 179

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
            V SV K+     D  QII  AL  IS
Sbjct: 180 YVNSVAKE---GMDTKQIIVAALGLIS 203


>gi|228910257|ref|ZP_04074075.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis IBL 200]
 gi|228849421|gb|EEM94257.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis IBL 200]
          Length = 197

 Score =  144 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 46/196 (23%), Positives = 92/196 (46%), Gaps = 5/196 (2%)

Query: 10  EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69
           E +  +YV+ID  G+ Y I+ P        +      ++   ++R+D + L+GF +  +R
Sbjct: 2   EYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALYGFKTREER 59

Query: 70  QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
             F  L  V G+G + A+ +L+     ++V+++  ++ K + + PG+  K A +++ +LK
Sbjct: 60  LLFTKLLGVSGIGPKGALAILASGQTGQVVQAVEHEDEKFLVKFPGVGKKTARQMILDLK 119

Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189
           GK   +      D+    +         +    A+ AL  LGY + + +  V  +LK+  
Sbjct: 120 GKLADVVPDAFVDLFSDTERFDEKKGSSAELDEALEALRALGYAEREVSRVVPELLKE-- 177

Query: 190 NIADDSQIIRLALRAI 205
                 Q I+ AL  +
Sbjct: 178 -SLTTDQYIKKALSLL 192


>gi|332978537|gb|EGK15246.1| crossover junction ATP-dependent DNA helicase RuvA [Psychrobacter
           sp. 1501(2011)]
          Length = 210

 Score =  144 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 56/209 (26%), Positives = 103/209 (49%), Gaps = 4/209 (1%)

Query: 1   MIGKIKGNIEGLYED-YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG I+G +  L      ++   GV Y +  P+     L ++    +++   H+R+D   
Sbjct: 1   MIGSIEGRVCHLAAPVACIMTASGVGYEVELPLPDFCQL-QLDATVSVWTHLHVREDAQL 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF+   +R  F  L  + GVGA++A+ ++S ++A EL +++   N   + ++PGI  K
Sbjct: 60  LYGFIKHQERDVFRQLIRINGVGAKMALAMMSTMSAPELKQAVETDNDVALTRVPGIGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ ELKGK  ++ +             +   S         SAL++LGY   +A  
Sbjct: 120 TAQRLLIELKGKFDNIETSGGLFEEQGGATISLAGSEGVILAEVESALISLGYRDKEAQR 179

Query: 180 AVVSVLKKEKN--IADDSQIIRLALRAIS 206
           A+ +  + E    I D   +++L L+ +S
Sbjct: 180 AIKAARETEAGQTIVDTQSLLKLTLQQLS 208


>gi|227833242|ref|YP_002834949.1| holliday junction DNA helicase [Corynebacterium aurimucosum ATCC
           700975]
 gi|262184228|ref|ZP_06043649.1| holliday junction DNA helicase [Corynebacterium aurimucosum ATCC
           700975]
 gi|254766955|sp|C3PGQ7|RUVA_CORA7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|227454258|gb|ACP33011.1| holliday junction DNA helicase [Corynebacterium aurimucosum ATCC
           700975]
          Length = 202

 Score =  144 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 103/205 (50%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +++  GV Y +      L  L + G+   +     +++D + L
Sbjct: 1   MIASLRGTVLDIQLDHAVLECAGVGYKVLATPAMLGTLQR-GEEARVMTTLVVKEDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  DR  F +LQ+V G+G ++A+  LS ++A +L ++I  + +  + +IPG+  ++
Sbjct: 60  YGFTSQDDRDMFHVLQTVSGLGPKLALAALSVMSAGDLAQAIAGEEAARLQKIPGVGKRV 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K  + +          +   A   +      + + AL+ LG+    A   
Sbjct: 120 AQRLILELKDKVKAFAP-----AESADLSSAAPAAAGPVVEDVVEALIGLGFTDKMARPV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V SV+ ++ + A    ++R AL  +
Sbjct: 175 VESVVAEQPDAA-TPVVLRAALSQL 198


>gi|25028330|ref|NP_738384.1| Holliday junction DNA helicase motor protein [Corynebacterium
           efficiens YS-314]
 gi|259507385|ref|ZP_05750285.1| Holliday junction DNA helicase RuvA [Corynebacterium efficiens
           YS-314]
 gi|29336725|sp|Q8FPK4|RUVA_COREF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|23493615|dbj|BAC18584.1| holliday junction DNA-helicase RuvA [Corynebacterium efficiens
           YS-314]
 gi|259165010|gb|EEW49564.1| Holliday junction DNA helicase RuvA [Corynebacterium efficiens
           YS-314]
          Length = 204

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 56/194 (28%), Positives = 101/194 (52%), Gaps = 3/194 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +     +I+ QGV Y +     TL+ L + G+  TL     +R+D ++L
Sbjct: 1   MIASLRGTVISIGLGTAVIECQGVGYEVTTTPTTLARLQR-GEEATLLTTMVVREDAMKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+ D  R+ F LLQ+V G+G R+A+   S +T  E+ ++I   ++K + ++PG+  ++
Sbjct: 60  YGFIDDQSREMFALLQTVTGLGPRLALACESVLTPLEIAQAIAGGDAKTLQRVPGVGKRM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K  + +  V  D +     Q     +    +    AL  LG+ + QA  A
Sbjct: 120 ADRLIVELKDKVAAYTVGVVDDGAPTAPTQGVAPVVVVDQV--TQALTGLGFTEKQADDA 177

Query: 181 VVSVLKKEKNIADD 194
           V +VL  +  +   
Sbjct: 178 VAAVLSADPGLDTS 191


>gi|228923173|ref|ZP_04086464.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228941589|ref|ZP_04104137.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228960694|ref|ZP_04122338.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228967497|ref|ZP_04128525.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228974518|ref|ZP_04135085.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228981112|ref|ZP_04141413.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis Bt407]
 gi|228987674|ref|ZP_04147786.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|229111893|ref|ZP_04241439.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           Rock1-15]
 gi|229129701|ref|ZP_04258669.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           BDRD-Cer4]
 gi|229146992|ref|ZP_04275354.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           BDRD-ST24]
 gi|229152624|ref|ZP_04280813.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           m1550]
 gi|229158036|ref|ZP_04286107.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           ATCC 4342]
 gi|229175095|ref|ZP_04302612.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           MM3]
 gi|228608391|gb|EEK65696.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           MM3]
 gi|228625489|gb|EEK82245.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           ATCC 4342]
 gi|228630885|gb|EEK87525.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           m1550]
 gi|228636489|gb|EEK92957.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           BDRD-ST24]
 gi|228653818|gb|EEL09688.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           BDRD-Cer4]
 gi|228671649|gb|EEL26947.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           Rock1-15]
 gi|228772059|gb|EEM20513.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228778653|gb|EEM26919.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis Bt407]
 gi|228785235|gb|EEM33247.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228792212|gb|EEM39786.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228799000|gb|EEM45973.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228818096|gb|EEM64173.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228836552|gb|EEM81902.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 197

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 92/196 (46%), Gaps = 5/196 (2%)

Query: 10  EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69
           E +  +YV+ID  G+ Y I+ P        +      ++   ++R+D + L+GF +  +R
Sbjct: 2   EYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALYGFKTREER 59

Query: 70  QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
             F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K A +++ +LK
Sbjct: 60  LLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLK 119

Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189
           GK   +      D+    +         +    A+ AL  LGY + + +  V  +LK+  
Sbjct: 120 GKLADVVPDAFVDLFSDTERFDEKKGSSAELDEALEALRALGYAEREVSRVVPELLKE-- 177

Query: 190 NIADDSQIIRLALRAI 205
                 Q I+ AL  +
Sbjct: 178 -SLTTDQYIKKALSLL 192


>gi|227503511|ref|ZP_03933560.1| Holliday junction DNA helicase motor protein [Corynebacterium
           accolens ATCC 49725]
 gi|227076014|gb|EEI13977.1| Holliday junction DNA helicase motor protein [Corynebacterium
           accolens ATCC 49725]
          Length = 202

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 100/205 (48%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +I+  GV Y      +TL  L + G+   +     +++D + L
Sbjct: 1   MIAALRGEVLHIGLDHGVIECGGVGYKFLATAKTLGTL-RRGETAFVLTTLVVKEDALTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF SD DR+ F +LQSV G+G ++A+  LS + A EL  +I  ++ K +  IPG+  ++
Sbjct: 60  YGFTSDDDREMFQVLQSVSGLGPKLALAALSVMGAEELAAAIGGEDVKALQSIPGVGKRM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+  ELK K    +     D +          +      +   AL+ LG+ +  A   
Sbjct: 120 AQRLTLELKDKVKRFAGTPVPDAAPEAT-----GAGGPVVDSVTEALLGLGFTEKAARPV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +   +    AD S ++R AL  +
Sbjct: 175 VEAAYAEAP-AADTSTLLRAALAQL 198


>gi|329942438|ref|ZP_08291248.1| holliday junction DNA helicase RuvA [Chlamydophila psittaci Cal10]
 gi|332287079|ref|YP_004421980.1| holliday junction DNA helicase [Chlamydophila psittaci 6BC]
 gi|325507386|gb|ADZ19024.1| holliday junction DNA helicase [Chlamydophila psittaci 6BC]
 gi|328815348|gb|EGF85336.1| holliday junction DNA helicase RuvA [Chlamydophila psittaci Cal10]
 gi|328914313|gb|AEB55146.1| Holliday junction DNA helicase RuvA [Chlamydophila psittaci 6BC]
          Length = 207

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 99/205 (48%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQIR 59
           M   I+G +  +    ++++ QG+ + I+ P R L  L  ++     ++  T +R+ +  
Sbjct: 1   MYDYIRGVLTYISSGTMVVESQGLGFSIFAPDRWLMELSSQLHRELIVYTYTVVRETEHV 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  +R+ F +L S  GVG +  + +L+  + ++L      ++ K IA +PGI  K
Sbjct: 61  LYGFNTRGERECFRMLISFSGVGPKTGLAILNTFSLSKLCSIARAEDIKAIASVPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A ++M +LK K   L  +  Q  +          + PS     I AL  LGY +  A  
Sbjct: 121 TAEKLMVDLKQKLADLLPLDSQITASWG------PAKPSCMEEGIQALAALGYPKSSAER 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +   + +  + A  ++I+ +AL+ 
Sbjct: 175 MIAEAMSELPDHASIAEILPIALKK 199


>gi|320011892|gb|ADW06742.1| Holliday junction DNA helicase RuvA [Streptomyces flavogriseus ATCC
           33331]
          Length = 208

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 56/212 (26%), Positives = 98/212 (46%), Gaps = 13/212 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L     +I+V G+   + C   TL+ L +IG    L     +R+D + L
Sbjct: 1   MIAFVSGPVAALAPTTAVIEVGGIGMAVQCTPGTLAGL-RIGTDARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+  +   L  ++   + K +  + GI  K 
Sbjct: 60  YGFADDDERQVFELLQTASGVGPRLAQAMLATHSPDALRTAVATGDEKALTAVSGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK +            + + ++        S+     +AL+ LGY   +A  A
Sbjct: 120 AQKLLLELKDRLGDPVG------ARIGQQGVGTPVSSSWRDQLQAALIGLGYATREADEA 173

Query: 181 VVSVLKK------EKNIADDSQIIRLALRAIS 206
           V +V  +          A   Q++R AL+ ++
Sbjct: 174 VTAVTPQAEAAIAGGGQAPVPQLLRAALQTLN 205


>gi|229192632|ref|ZP_04319593.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           ATCC 10876]
 gi|228590939|gb|EEK48797.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           ATCC 10876]
          Length = 197

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 92/196 (46%), Gaps = 5/196 (2%)

Query: 10  EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69
           E +  +YV+ID  G+ Y I+ P        +      ++   ++R+D + L+GF +  +R
Sbjct: 2   EYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALYGFKTREER 59

Query: 70  QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
             F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K A +++ +LK
Sbjct: 60  LLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLK 119

Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189
           GK   +      D+    +         +    A+ AL  LGY + + +  V  +LK+  
Sbjct: 120 GKLADVVPDAFVDLFSDTERFDENKGSSAELDEALEALRALGYAEREVSRVVPELLKE-- 177

Query: 190 NIADDSQIIRLALRAI 205
                 Q I+ AL  +
Sbjct: 178 -ALTTDQYIKKALSLL 192


>gi|254441542|ref|ZP_05055035.1| Holliday junction DNA helicase RuvA [Octadecabacter antarcticus
           307]
 gi|198251620|gb|EDY75935.1| Holliday junction DNA helicase RuvA [Octadecabacter antarcticus
           307]
          Length = 231

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 118/229 (51%), Gaps = 24/229 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +E    D+VLIDV+GV YI++   R ++ L ++G+   L+ +  +R+D ++L
Sbjct: 1   MIGRIAGRLEYRATDHVLIDVKGVGYIVFVSDRVMATLPRVGEAVALYTDLLVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++W  LL SVQG+GA+ ++ +L  + A  +  SI + +   +A   G+  K 
Sbjct: 61  FGFTTLVEKEWHRLLMSVQGIGAKASLAILGTLGADGVSRSIAMGDWATVATAKGVGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSC-----------------------VNKEQAHICSMP 157
           A +++ +LK KA S+ ++                              V++         
Sbjct: 121 AKKVILDLKDKAHSVMAMAGTAAGAASAAGGVASVSADAETDADADALVDRYDGPAAGNG 180

Query: 158 SFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           +    A+SAL NLGYG   A  AV     +  + AD + +IR AL+ ++
Sbjct: 181 AAQSEALSALSNLGYGPSDAAGAVAQAAVEN-DGADTAVLIRAALKLLA 228


>gi|332883220|gb|EGK03503.1| Holliday junction ATP-dependent DNA helicase ruvA [Dysgonomonas
           mossii DSM 22836]
          Length = 193

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 100/205 (48%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG+I  L      ++  G+ Y I   + T + +        L++   +R+D  +L
Sbjct: 1   MIDYIKGDIAELTPTSATLETHGIGYFINISLNTYTSISGQKS-AKLYIYEAIREDAYQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F+LL SV G+GA     +LS +T  EL   I   NS ++  + GI  K 
Sbjct: 60  YGFSEKQERELFILLISVSGIGASTGRMILSSMTVQELTNVIASGNSDILKTVKGIGTKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K   +S +   +M     +             AI+ALV LG+ Q  +  A
Sbjct: 120 AQRVIVDLKDKI-KVSGIESVEMFAKTSQAG---------EEAIAALVMLGFPQQASQKA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +LK + + +   Q+I+ AL+ +
Sbjct: 170 VSKILKDKPD-STVEQVIKTALKML 193


>gi|251783476|ref|YP_002997781.1| Holliday junction DNA helicase RuvA [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242392108|dbj|BAH82567.1| Holliday junction DNA helicase RuvA [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|323128222|gb|ADX25519.1| Holliday junction DNA helicase RuvA [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 197

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 91/205 (44%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ YII       S    +    T+++   +R+D   L
Sbjct: 1   MYDYIKGQLTKITAKYIVVETNGLGYIINV-ANPYSFTDSVNQLVTIYLHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNQGLVNAIDTSDIKYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK + +           +K +    S       AI AL+ LGY   +    
Sbjct: 120 AQQMVLDLAGKFVEVPQE-------TSKAKPSTSSNNDQLDEAIEALLALGYKATELKK- 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +    E       Q I+ AL+ +
Sbjct: 172 IRAFF--EGTSETAEQYIKSALKLL 194


>gi|126737218|ref|ZP_01752953.1| Holliday junction DNA helicase motor protein [Roseobacter sp.
           SK209-2-6]
 gi|126721803|gb|EBA18506.1| Holliday junction DNA helicase motor protein [Roseobacter sp.
           SK209-2-6]
          Length = 228

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 118/226 (52%), Gaps = 21/226 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++   +D++LIDV GV YI+YC  RTL+ L   G+   L+ +  +R+D ++L
Sbjct: 1   MIGKLTGRLDYRTQDHILIDVHGVGYIVYCSERTLAALPGTGEAVALYTDMVVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S ++++W  LL SVQGVGA+V++ +L  +    +  +I L +   +    G+  K 
Sbjct: 61  YGFTSLVEKEWHRLLCSVQGVGAKVSLAILGALGPDGVSRAIALGDWAAVKAAKGVGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI------------------- 161
           A RI+ +LK KA ++ ++       ++     +      A                    
Sbjct: 121 AQRIVLDLKDKAPAVMAMGGSVADAMDGPGLEVIEEAEPAATKSARKTAPKKPSGAAAAS 180

Query: 162 -NAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
             A+SAL NLGYG   A  AV        + AD++++IR ALR ++
Sbjct: 181 AGALSALGNLGYGPSDAAAAVAEAAATYPD-ADEAELIRAALRLLA 225


>gi|282164971|ref|YP_003357356.1| Holliday junction ATP-dependent DNA helicase RuvA [Methanocella
           paludicola SANAE]
 gi|282157285|dbj|BAI62373.1| Holliday junction ATP-dependent DNA helicase RuvA [Methanocella
           paludicola SANAE]
          Length = 196

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 115/206 (55%), Gaps = 11/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMR-QDQIR 59
           MI  ++G +E    + ++IDV GV Y +  P      +   G+ C +F+ T+ R +D   
Sbjct: 1   MIAHLEGRLEYKGHERIVIDVGGVGYDVRVPTHLYDLIPAEGERCKVFIHTYFREEDGTS 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  DR++F LL +V G+G +VA+G++S ITA++L E+I+++++K + ++ G+  K
Sbjct: 61  LYGFTTWQDREFFKLLMTVSGIGPKVALGIMSSITASDLAEAIVVEDAKALTRVNGVGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           +A R++ ELK K   +S           + +A        + +A SALV LGY +  A+ 
Sbjct: 121 MAQRLILELKDKVAEMSI----------ENRAKKPGADMTSEDATSALVALGYSRQAASA 170

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
           AV         ++   ++I+ +LR +
Sbjct: 171 AVARARDASPGLSKVEELIKTSLRYL 196


>gi|251798377|ref|YP_003013108.1| Holliday junction DNA helicase RuvA [Paenibacillus sp. JDR-2]
 gi|247546003|gb|ACT03022.1| Holliday junction DNA helicase RuvA [Paenibacillus sp. JDR-2]
          Length = 212

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 52/211 (24%), Positives = 98/211 (46%), Gaps = 8/211 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G I  +  +YV++DV+ V Y ++ P    +  GK G   T+++  H+R+D I L
Sbjct: 1   MIDFLRGLISHVESEYVVLDVRDVGYQVFTP-NPYAFAGKEG-TVTIYIHHHVREDAILL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  ++  F  L  V G+G RVA+G+L+      ++ +I  +N   + ++PGI  K 
Sbjct: 59  YGFESREEQTLFRKLLEVSGIGPRVALGILAGGRPDAVIGAIQQENIAFLTRLPGIGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP------SFAINAISALVNLGYGQ 174
           A R++ +LK K    ++      +        + +        +    A   L  LGY  
Sbjct: 119 AQRMILDLKDKLAGFATDAGLLAAAGLAPHQPVSAASAQQGAGTAWEEARDGLSALGYTA 178

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
            +   A  ++            +++ AL+ +
Sbjct: 179 AELDKAWSALAPSVTADETVDSLMKRALQQL 209


>gi|34540592|ref|NP_905071.1| Holliday junction DNA helicase RuvA [Porphyromonas gingivalis W83]
 gi|44888375|sp|Q7MW36|RUVA_PORGI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|34396905|gb|AAQ65970.1| Holliday junction DNA helicase RuvA [Porphyromonas gingivalis W83]
          Length = 202

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 94/205 (45%), Gaps = 3/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG I GL    ++I+  GV Y +   + T S      +      +  +R+D   L
Sbjct: 1   MIEYLKGAIVGLTPTNLVIECAGVGYDVNVSLTTYSAYQGKKEGLIWITQL-IREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L SV GVG   A  +LS     EL   I    +  +  + GI +K 
Sbjct: 60  YGFSTKEERTLFGQLTSVSGVGPTTAQLILSSYAPQELAALITTGQADALKAVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LKGK   L +   + +S          +  +    AISAL  LG+       A
Sbjct: 120 AQRIIVDLKGKI-QLETSSDEILSARTAVGDAALNTIASGEEAISALKMLGFADPAIRKA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V S+L ++ ++A    II+ ALR +
Sbjct: 179 VKSILSEDSSLA-VEDIIKRALRML 202


>gi|332670539|ref|YP_004453547.1| Holliday junction DNA helicase RuvA [Cellulomonas fimi ATCC 484]
 gi|332339577|gb|AEE46160.1| Holliday junction DNA helicase RuvA [Cellulomonas fimi ATCC 484]
          Length = 204

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 55/208 (26%), Positives = 98/208 (47%), Gaps = 12/208 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D  +++V GV  ++     TL+ L ++G   TL     +R+D + L
Sbjct: 1   MIASVRGTVLAVRLDSAVVEVGGVGMLVQATPATLAGL-RVGAQATLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R+ F ++Q+V GVG R+A+ +L+  T   L  ++  ++   + ++PGI  K 
Sbjct: 60  FGFADADEREVFEVVQTVSGVGPRLALAMLAVHTPDGLRRAVAGEDLAALMRVPGIGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL  +            S          +        + ALV LG+    A  A
Sbjct: 120 AQRIVLELGDRL--------GAPSGAGAPATSSAASDDRRDQVVEALVGLGWNAKAAGDA 171

Query: 181 VVSVLKKEKN---IADDSQIIRLALRAI 205
           V +VL+         + + ++R ALR +
Sbjct: 172 VSAVLQDAPGPVAADEVAGVLRAALRTL 199


>gi|229071929|ref|ZP_04205140.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           F65185]
 gi|228711225|gb|EEL63189.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           F65185]
          Length = 197

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 92/196 (46%), Gaps = 5/196 (2%)

Query: 10  EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69
           E +  +YV+ID  G+ Y I+ P        +      ++   ++R+D + L+GF +  +R
Sbjct: 2   EYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALYGFKTREER 59

Query: 70  QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
             F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K A +++ +LK
Sbjct: 60  LLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLK 119

Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189
           GK   +      D+    +         +    A+ AL  LGY + + +  V  +LK+  
Sbjct: 120 GKLADVVPDAFVDLFSDAERFDEKKGSSAELDEALEALRALGYAEREVSRVVPELLKE-- 177

Query: 190 NIADDSQIIRLALRAI 205
                 Q I+ AL  +
Sbjct: 178 -ALTTDQYIKKALSLL 192


>gi|303238091|ref|ZP_07324631.1| Holliday junction DNA helicase RuvA [Prevotella disiens FB035-09AN]
 gi|302481726|gb|EFL44781.1| Holliday junction DNA helicase RuvA [Prevotella disiens FB035-09AN]
          Length = 205

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 58/209 (27%), Positives = 97/209 (46%), Gaps = 9/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM----RQD 56
           MI  IKG +  L     ++D  GV Y +   + T   + +      LFV   +    R D
Sbjct: 1   MIEYIKGELAELTPALAVVDANGVGYGLNISLNTYGVI-QGKKSVKLFVHEAISMGGRDD 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF +  +R  + LL +V GVGA  A  +LS +T  EL   I   + K++  + GI
Sbjct: 60  SYTLYGFANKQERGLYRLLITVSGVGANTARMILSSLTPAELCNVIANGDEKMLKAVKGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
            +K A RI+ +LK K +      +     V+ +        +    A+ AL  LG+    
Sbjct: 120 GLKTAQRIIVDLKDKIVQSGIAEEL---HVSSQPNAANVNNAVKDEAVGALTMLGFSPAP 176

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           +   VV +L ++ ++    Q+++LAL+ I
Sbjct: 177 SAKVVVDILTEQPDLP-VEQVVKLALKQI 204


>gi|229081685|ref|ZP_04214180.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           Rock4-2]
 gi|228701689|gb|EEL54180.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           Rock4-2]
          Length = 197

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 92/196 (46%), Gaps = 5/196 (2%)

Query: 10  EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69
           E +  +YV+ID  G+ Y I+ P        +      ++   ++R+D + L+GF +  +R
Sbjct: 2   EYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALYGFKTREER 59

Query: 70  QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
             F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K A +++ +LK
Sbjct: 60  LLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLK 119

Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189
           GK   +      D+    +         +    A+ AL  LGY + + +  V  +LK+  
Sbjct: 120 GKLADVVPDAFVDLFSDTERFDEKKGSSAELDEALEALRALGYAEREVSRVVPELLKE-- 177

Query: 190 NIADDSQIIRLALRAI 205
                 Q I+ AL  +
Sbjct: 178 -ALTTDQYIKKALSLL 192


>gi|56421127|ref|YP_148445.1| Holliday junction DNA helicase RuvA [Geobacillus kaustophilus
           HTA426]
 gi|297529245|ref|YP_003670520.1| Holliday junction DNA helicase RuvA [Geobacillus sp. C56-T3]
 gi|81346764|sp|Q5KWQ9|RUVA_GEOKA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|56380969|dbj|BAD76877.1| holliday junction DNA helicase [Geobacillus kaustophilus HTA426]
 gi|297252497|gb|ADI25943.1| Holliday junction DNA helicase RuvA [Geobacillus sp. C56-T3]
          Length = 194

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 93/205 (45%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G ++ +  +Y++ID  G+ Y I+ P    +         T++   ++R+    L
Sbjct: 1   MIEFIRGYVDYVCPEYIVIDHNGIGYEIFTP-NPFAFQESREAAVTVYTYEYVREGVHAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L  V G+G +  + +L+     EL  +I  +N   + + PG+  K 
Sbjct: 60  YGFPTREERNLFAKLLQVSGIGPKGGLAILAAGRPDELARAIEEENEAFLCKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK  +L++                  +      A++AL  LGY + +    
Sbjct: 120 ARQMILDLKGKLGALAAPAA---------ARSAAPLSGALAEAVAALKALGYAEREIEKI 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++ ++        Q ++ AL  +
Sbjct: 171 IPALREE---AMSTEQYVKRALALL 192


>gi|222097866|ref|YP_002531923.1| holliday junction DNA helicase ruva [Bacillus cereus Q1]
 gi|228917058|ref|ZP_04080617.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228929466|ref|ZP_04092487.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228948135|ref|ZP_04110419.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229093493|ref|ZP_04224596.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           Rock3-42]
 gi|229123962|ref|ZP_04253154.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           95/8201]
 gi|229163369|ref|ZP_04291321.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           R309803]
 gi|229186660|ref|ZP_04313821.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           BGSC 6E1]
 gi|229198549|ref|ZP_04325252.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           m1293]
 gi|221241924|gb|ACM14634.1| holliday junction DNA helicase [Bacillus cereus Q1]
 gi|228584934|gb|EEK43049.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           m1293]
 gi|228596919|gb|EEK54578.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           BGSC 6E1]
 gi|228620150|gb|EEK77024.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           R309803]
 gi|228659264|gb|EEL14912.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           95/8201]
 gi|228689964|gb|EEL43768.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           Rock3-42]
 gi|228811493|gb|EEM57830.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228830254|gb|EEM75870.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228842586|gb|EEM87675.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 197

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 92/196 (46%), Gaps = 5/196 (2%)

Query: 10  EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69
           E +  +YV+ID  G+ Y I+ P        +      ++   ++R+D + L+GF +  +R
Sbjct: 2   EYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALYGFKTREER 59

Query: 70  QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
             F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K A +++ +LK
Sbjct: 60  LLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLK 119

Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189
           GK   +      D+    +         +    A+ AL  LGY + + +  V  +LK+  
Sbjct: 120 GKLADVVPDAFVDLFSDEERFDEKKGSSAELDEALEALRALGYAEREVSRVVPELLKE-- 177

Query: 190 NIADDSQIIRLALRAI 205
                 Q I+ AL  +
Sbjct: 178 -SLTTDQYIKKALSLL 192


>gi|86608038|ref|YP_476800.1| Holliday junction DNA helicase RuvA [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|123738043|sp|Q2JNW8|RUVA_SYNJB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|86556580|gb|ABD01537.1| Holliday junction DNA helicase RuvA [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 204

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 49/209 (23%), Positives = 94/209 (44%), Gaps = 11/209 (5%)

Query: 1   MIGKIKGNIEGLY---EDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ 57
           MI  + G++  +       + ++VQG+ Y +  P R L  L  +G+   +F    +R+ +
Sbjct: 1   MIAFLSGHLVAIEWGERSSLTVEVQGIGYRVKAPGRFLKQLPAVGEPVRVFTHLVVRETE 60

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
           + L+GF S  +R  F+ L  V GVG  + + +L+     ELV++++ +N ++++  PG+ 
Sbjct: 61  LVLYGFGSPAERDLFVELIKVSGVGPALGLALLNTFGLPELVQAVVTENVRLLSLTPGVG 120

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            K A R+  ELK K       +      V  +                AL+ LGY   + 
Sbjct: 121 HKTAQRLALELKTKLAHWRQGMG-----VADQPLAGGPPMPIREEVEMALLALGYSTQEI 175

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
             A+ ++    +        +R A+  +S
Sbjct: 176 QAALQALPTHPRP---TEDWLRDAITYLS 201


>gi|86139156|ref|ZP_01057726.1| Holliday junction DNA helicase RuvA [Roseobacter sp. MED193]
 gi|85824000|gb|EAQ44205.1| Holliday junction DNA helicase RuvA [Roseobacter sp. MED193]
          Length = 229

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 118/227 (51%), Gaps = 22/227 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +E    D+VLIDV+GV Y++YC  RT+  L  +G+  TL+ +  +R+D ++L
Sbjct: 1   MIGKLTGRLEYRTADHVLIDVRGVGYLVYCSERTMMTLPGVGEPVTLYTDMVVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S ++++W  LL SVQGVGA+V++ +L  +    +  +I L +   +    G+  K 
Sbjct: 61  YGFTSLVEKEWHRLLTSVQGVGAKVSLAILGTLGPDGVSRAIALGDWGSVKAAKGVGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP---------------------SF 159
           A RI+ +LK KA  + ++       +          P                     + 
Sbjct: 121 AQRIVLDLKDKAPGVMAMGGSLPDAIEGADLEAVVEPVEPAAPKKTARKAASKPSGAAAA 180

Query: 160 AINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           +  A+SAL NLGY    A +AV     +  + AD+S +IR ALR ++
Sbjct: 181 SAGALSALGNLGYSPSDAASAVAEAAGENPD-ADESALIRAALRLLA 226


>gi|229032072|ref|ZP_04188054.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           AH1271]
 gi|228729264|gb|EEL80259.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           AH1271]
          Length = 197

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 91/196 (46%), Gaps = 5/196 (2%)

Query: 10  EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69
           + +  +YV+ID  G+ Y I+ P        +      +F   ++R+D + L+GF +  +R
Sbjct: 2   DYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVFTYHYVREDIMALYGFKTREER 59

Query: 70  QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
             F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K A +++ +LK
Sbjct: 60  LLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLK 119

Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189
           GK   +      D+    +              A+ AL  LGY + + +  V  +LK+  
Sbjct: 120 GKLADVVPDAFVDLFSDTERFDEKKGSSVELDEALEALRALGYAEREVSRVVPELLKE-- 177

Query: 190 NIADDSQIIRLALRAI 205
                 Q I+ AL  +
Sbjct: 178 -SLTTDQYIKKALSLL 192


>gi|288801343|ref|ZP_06406797.1| holliday junction DNA helicase RuvA [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288331726|gb|EFC70210.1| holliday junction DNA helicase RuvA [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 204

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 57/209 (27%), Positives = 100/209 (47%), Gaps = 10/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM----RQD 56
           MI  IKG++  +     +I+  GV Y +   + T S + +  +   L+V   +    R D
Sbjct: 1   MIEYIKGDLAEITPALAVIETAGVGYALNISLTTYSAI-QGKEEVKLYVHEALVTGGRDD 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF +  +R+ + LL +V GVGA  A  +LS I+  EL   I   + +++  + GI
Sbjct: 60  SYTLYGFATKQERELYRLLITVSGVGANTARMILSSISPAELCNVIASGDERMLKSVKGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
            +K A RI+ +LK K +S     +  +       ++     +    A+ AL  LG+    
Sbjct: 120 GLKTAQRIIVDLKDKILSSGIATEFKVGN----DSNATIDSAVKDEAVGALTMLGFSPAP 175

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           +   V  +LK E  +    Q+++LAL+ I
Sbjct: 176 SAKVVSEILKNEPTLP-VEQVVKLALKQI 203


>gi|256827686|ref|YP_003151645.1| Holliday junction DNA helicase, RuvA subunit [Cryptobacterium
           curtum DSM 15641]
 gi|256583829|gb|ACU94963.1| Holliday junction DNA helicase, RuvA subunit [Cryptobacterium
           curtum DSM 15641]
          Length = 194

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +     D +++DV GV + +    ++LS L  +G    +     +R+D + L
Sbjct: 1   MIASLKGTLVAREADGIVLDVGGVGFSVGMSTQSLSRLPSVGVTVQIHTYLQVREDALTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  ++  F  L SV G+G +VA+  LS  T   L  +I+  +   +++IPGI  K 
Sbjct: 61  FGFTSVKEKALFEKLLSVSGIGPKVALSALSSFTPDALTSAIMTNDVTGVSRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL+G           D++    +Q  + S       A+  L+ LG+   +A  A
Sbjct: 121 AQRIILELQGSL---------DVAEQTSDQMAVPSDTQLHHRALDDLLALGFSSTEAELA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
               LK     A ++ +++ AL+ +
Sbjct: 172 ----LKGAPKDATEASLVQYALKRL 192


>gi|159043653|ref|YP_001532447.1| Holliday junction DNA helicase RuvA [Dinoroseobacter shibae DFL 12]
 gi|189045752|sp|A8LHP9|RUVA_DINSH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|157911413|gb|ABV92846.1| holliday junction DNA helicase RuvA [Dinoroseobacter shibae DFL 12]
          Length = 224

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 118/223 (52%), Gaps = 19/223 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G +     D++++DV+GV Y++ C  RTL+ +   G    LF E  +R+D ++L
Sbjct: 1   MIGRLSGVLVYRGRDHIVLDVRGVGYVVQCSERTLAGMPAPGGPVALFTELLVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + L+++W  LL SVQGVGA+ +M +LS +    +  +I L +   + +  G+  KI
Sbjct: 61  YGFPTLLEKEWHRLLTSVQGVGAKASMSILSTLGVDGVGRAIALGDWGALRKAQGVGPKI 120

Query: 121 ASRIMTELKGKAISLSSV-----------------VQQDMSCVNKEQAHICSMPSFAINA 163
           A R++ ELK K   + ++                   + +   +  +  + S  S    A
Sbjct: 121 AQRVVNELKDKGPEVMAMGGTLEAALDGVIEDGMAASEGIEPPSAARPAVPSAASDQAGA 180

Query: 164 ISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           +SALVNLGYGQ +A +AV +   +         IIR ALR ++
Sbjct: 181 LSALVNLGYGQGEAASAVATAAGEGAVGET--DIIRAALRLLA 221


>gi|301301358|ref|ZP_07207500.1| Holliday junction DNA helicase RuvA [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300214787|gb|ADJ79203.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus
           salivarius CECT 5713]
 gi|300851018|gb|EFK78760.1| Holliday junction DNA helicase RuvA [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 201

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 91/205 (44%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G I  +   Y+++DV GV Y +Y                 +FV   +R + I L
Sbjct: 1   MYEYLRGVITEVTPYYIVVDVNGVGYQVYV-ANPFKYEEDEHVEQKVFVYQAVRDNDISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++Q F+ L  V G+G + A+ +L+      L+ +I   +   + + PGI  K 
Sbjct: 60  YGFKNSSEKQLFLKLLDVSGIGPKSALAILANDDNRGLINAINSDDDGYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   + S +   ++  +     + +   +   ++ AL  LGY + +    
Sbjct: 120 AKQIILDLKGKLSDVDSDM---LTGQDNLDLDLNASSPYLKESLEALRALGYTKTEVKRI 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              + K +         +R  LR +
Sbjct: 177 SKKLEKYDG--KSTDDYLRQGLRLL 199


>gi|94989443|ref|YP_597544.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes
           MGAS9429]
 gi|94993332|ref|YP_601431.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes
           MGAS2096]
 gi|123080353|sp|Q1JJH3|RUVA_STRPC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|123382245|sp|Q1J9C4|RUVA_STRPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|94542951|gb|ABF33000.1| holliday junction DNA helicase [Streptococcus pyogenes MGAS9429]
 gi|94546840|gb|ABF36887.1| Holliday junction DNA helicase ruvA [Streptococcus pyogenes
           MGAS2096]
          Length = 198

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 91/205 (44%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ YII       S    +    T+++   +R+D   L
Sbjct: 1   MYDYIKGQLTKITAKYIVVETNGLGYIINV-ANPYSFTDSVNQLVTIYLHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK       V+      N +     +  +    AI AL+ LGY   +    
Sbjct: 120 AQQMVLDLAGKF------VEAPQETGNTKARSNKAGNTQLDEAIEALLALGYKATELKK- 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +    E       Q I+ AL+ +
Sbjct: 173 IRAFF--EGTSETAEQYIKSALKLL 195


>gi|19746986|ref|NP_608122.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes
           MGAS8232]
 gi|24212371|sp|Q8NZ27|RUVA_STRP8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|19749241|gb|AAL98621.1| putative Holliday junction DNA helicase [Streptococcus pyogenes
           MGAS8232]
          Length = 198

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 90/205 (43%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ Y+I       S    +    T+++   +R+D   L
Sbjct: 1   MYDYIKGQLTKITAKYIVVEANGLGYMINV-ANPYSFTDSVNQLVTIYLHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTKDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK       V+      N +     +  +    AI AL+ LGY   +    
Sbjct: 120 AQQMVLDLAGKF------VEAPQETGNTKARSNKAGNTQLDEAIEALLALGYKATELKK- 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +    E       Q I+ AL+ +
Sbjct: 173 IRAFF--EGTSETAEQYIKSALKLL 195


>gi|282860281|ref|ZP_06269351.1| Holliday junction DNA helicase RuvA [Prevotella bivia JCVIHMP010]
 gi|282586955|gb|EFB92190.1| Holliday junction DNA helicase RuvA [Prevotella bivia JCVIHMP010]
          Length = 205

 Score =  143 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 64/208 (30%), Positives = 101/208 (48%), Gaps = 7/208 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM---RQDQ 57
           MI  IKG +  L     +++ +GV Y I   + T S +    D      E  +   R D 
Sbjct: 1   MIEYIKGELAELTPTLAVVEARGVGYAINISLNTYSAIQGKNDIKLYIHEAIVTGGRDDS 60

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
             L+GFLS  +R  + LL +V GVGA  A  +LS +T +EL   I   + K++  + GI 
Sbjct: 61  YTLYGFLSKQERSLYRLLITVSGVGANTARMILSSLTPSELCNVIANGDEKMLKAVKGIG 120

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           +K A RI+ +LK K +        D   +N   A      +    A+SAL+ LG+    +
Sbjct: 121 LKTAQRIIVDLKDKIMQ---SGIADELHINSSSASSNINTAVKDEALSALIMLGFSPAPS 177

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
              VVS+L ++  +    Q+++LAL+ I
Sbjct: 178 AKVVVSILTEQPELP-VEQVVKLALKMI 204


>gi|306836241|ref|ZP_07469223.1| crossover junction ATP-dependent DNA helicase RuvA [Corynebacterium
           accolens ATCC 49726]
 gi|304567833|gb|EFM43416.1| crossover junction ATP-dependent DNA helicase RuvA [Corynebacterium
           accolens ATCC 49726]
          Length = 202

 Score =  143 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +I+  GV Y      +TL  L + G+   +     +++D + L
Sbjct: 1   MIAALRGEVLHIGLDHGVIECSGVGYKFLATAKTLGTL-RRGETAFVLTTLVVKEDALTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF SD DR+ F +LQSV G+G ++A+  LS + A EL  +I  ++ K +  IPG+  ++
Sbjct: 60  YGFTSDDDREMFQVLQSVSGLGPKLALAALSVMGAEELAAAIGGEDVKALQSIPGVGKRM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+  ELK K    +     D +          +      +   AL+ LG+ +  A   
Sbjct: 120 AQRLTLELKDKVKRFAGTPAPDAAPEAT-----GAGGPVVDSVTEALLGLGFTEKAARPV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +    E   AD S ++R AL  +
Sbjct: 175 VEA-AYAEAPAADTSTLLRAALAQL 198


>gi|253732298|ref|ZP_04866463.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253724087|gb|EES92816.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
          Length = 200

 Score =  143 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 52/204 (25%), Positives = 94/204 (46%), Gaps = 7/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  LY  +V+++  GV Y I  P  +     ++     +     +R+D   L
Sbjct: 1   MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKQLDHEVLIHTSLIVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ ++  F+ L  V G+G + A+ +L+  T  E+  +I  +N   + + PGI  K 
Sbjct: 60  YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK      + ++D   + +  A       F   A+ AL  LGY + +    
Sbjct: 120 ARQIVLDLKGKVK----ITEEDSDSLLQVDATSTVQDQFVQEAMLALEALGYSKRELAK- 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V   L K K      + ++  L+ 
Sbjct: 175 VEKTLNKNK-YDSVDEAVKAGLQL 197


>gi|116872962|ref|YP_849743.1| holliday junction DNA helicase RuvA [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|123463790|sp|A0AIY2|RUVA_LISW6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|116741840|emb|CAK20964.1| holliday junction DNA helicase RuvA [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 201

 Score =  143 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 94/205 (45%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +  +Y++++   + Y I       S     G    +F+  H+R+D I L
Sbjct: 1   MYDYIKGKVTTITPEYIVVEAGQIGYQI-ITGNPFSFQRLEGSEAQVFLYQHVREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L SV G+G + A+ +++      L+ +I  ++   + + P +  K 
Sbjct: 60  FGFQSTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLITAIESEDDVYLTKFPSVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   L+ VV  ++     E   +  +      A+ AL  LGY   +    
Sbjct: 120 ARQIILDLKGK---LADVVASEIVFKAPENDIVHGLSPQLEEAVLALEALGYSTKELKKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  + K+          I+LALR +
Sbjct: 177 IPKLSKEN--DLTSDAYIKLALRLM 199


>gi|220910036|ref|YP_002485347.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 7425]
 gi|219866647|gb|ACL46986.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 7425]
          Length = 207

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 57/212 (26%), Positives = 95/212 (44%), Gaps = 12/212 (5%)

Query: 1   MIGKIKGNIEGL----YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG ++G I G+        + +DV GV Y +    R ++ L   G+   +F    +R+D
Sbjct: 1   MIGYLQGRIAGVQRGGNRTLLTLDVNGVGYDLQILPRLVNKLPPEGETLQMFTHLQVRED 60

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
           Q+ L+GF    +R  F  L SV GVG ++A+ +L  +   ELV++I+  N++ +++ PG+
Sbjct: 61  QMILYGFAITAERDLFRQLISVSGVGPQLALALLEGMELAELVQAIVSGNTRTLSRTPGV 120

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             K A RI  ELK K                        + +        L+ LGY   +
Sbjct: 121 GSKTAERIALELKTKLAEWRQQSGLTT------VPSAGPIAAVREEVELTLLALGYSSTE 174

Query: 177 ATTAVVSVLKK--EKNIADDSQIIRLALRAIS 206
              A+ +V +        D    IR A+  +S
Sbjct: 175 VMQALQAVGENTALAKAGDAEAWIRAAIAWLS 206


>gi|71904448|ref|YP_281251.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes
           MGAS6180]
 gi|90135995|sp|Q48QW4|RUVA_STRPM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|71803543|gb|AAX72896.1| holliday junction DNA helicase [Streptococcus pyogenes MGAS6180]
          Length = 198

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 91/205 (44%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ YII       S    +    T+++   +R+D   L
Sbjct: 1   MYDYIKGQLTKITAKYIVVETNGLGYIINV-ANPYSFTDSVNQLVTIYLHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK       V+      N +     +  +    AI AL+ LGY   +    
Sbjct: 120 AQQMVLDLAGKF------VEAPQETGNTKARSNKAGNTQLDEAIEALLALGYKAAELKK- 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +    E       Q I+ AL+ +
Sbjct: 173 IRAFF--EGTSETAEQYIKSALKLL 195


>gi|297571393|ref|YP_003697167.1| Holliday junction DNA helicase RuvA [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931740|gb|ADH92548.1| Holliday junction DNA helicase RuvA [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 199

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 94/205 (45%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +     +I+V GV   +     TLS L ++G    L     +R+D + L
Sbjct: 1   MIASLRGIVSAIGITSAVIEVGGVGMSVQATPTTLSTL-RMGAEAHLMTSLIVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F +L  + G+G R A+ VL+ +T   L +++  +N   + ++ GI  K 
Sbjct: 60  YGFGDIDERDVFDILTGISGIGPRTALAVLAVLTPDALRDAVATKNEAALTRVSGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL  K            +      A          + + ALVNLG+ + +A  A
Sbjct: 120 AQRMILELGSKLGPTRGSATASGADTRVVPADA--------DVLEALVNLGWNEREAAPA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V     K    A  ++++R AL+ +
Sbjct: 172 VHEATNKMP-GASVAELLRAALQIL 195


>gi|257469281|ref|ZP_05633375.1| Holliday junction DNA helicase ruvA [Fusobacterium ulcerans ATCC
           49185]
 gi|317063528|ref|ZP_07928013.1| holliday junction DNA helicase ruvA [Fusobacterium ulcerans ATCC
           49185]
 gi|313689204|gb|EFS26039.1| holliday junction DNA helicase ruvA [Fusobacterium ulcerans ATCC
           49185]
          Length = 198

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/204 (22%), Positives = 94/204 (46%), Gaps = 9/204 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G +E    DY+ +DV GV Y +   +RT   +   G+   L++  ++++D  +L
Sbjct: 1   MYEYLRGKVEYKKPDYLALDVNGVGYKVNISLRTYDFI-SAGEEVKLYIYNYIKEDAFKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GFL + +R  F +L  V+G+G  +A+ V+S      + + +   +   + ++P +  K 
Sbjct: 60  IGFLEERERNLFEMLLGVKGIGVSLALSVMSTFDIDTIRDLVATDDYTNLKRVPKLGEKK 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           + +++ +LK K  +L      D   ++                ISAL  LGY + +  T 
Sbjct: 120 SQQLILDLKSKLKTL------DALSIDTRNDDAAKHLMIEEELISALEGLGYSKKEINTL 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           +     + ++     + I+  L+ 
Sbjct: 174 ITR--DELRSFKTIEEAIKGVLKK 195


>gi|307326761|ref|ZP_07605953.1| Holliday junction DNA helicase RuvA [Streptomyces violaceusniger Tu
           4113]
 gi|306887524|gb|EFN18518.1| Holliday junction DNA helicase RuvA [Streptomyces violaceusniger Tu
           4113]
          Length = 206

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 57/212 (26%), Positives = 99/212 (46%), Gaps = 15/212 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +  D  +I+V G+   + C   TL+ L ++G    L     +R+D + L
Sbjct: 1   MIAFVSGPVAAVAPDTAVIEVGGIGMALQCTPATLAGL-RVGQQARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+  +   L  ++   + K +  +PGI  K 
Sbjct: 60  YGFADDDERQVFELLQTASGVGPRLAQAMLAVHSPDVLRLAVSTGDEKALTAVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +                   A   + P ++    +ALV LGY   +A  A
Sbjct: 120 AQRLLLELKDRLGEPLGSAVPS--------ARSAAAPGWSDQLHTALVGLGYATREADEA 171

Query: 181 VVSVLKKEKNI------ADDSQIIRLALRAIS 206
           V +V  + +           + ++R AL+ ++
Sbjct: 172 VAAVTPQAEEAVAAGGKPQVALLLRAALQTLN 203


>gi|258648476|ref|ZP_05735945.1| holliday junction DNA helicase RuvA [Prevotella tannerae ATCC
           51259]
 gi|260851236|gb|EEX71105.1| holliday junction DNA helicase RuvA [Prevotella tannerae ATCC
           51259]
          Length = 197

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 99/205 (48%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I  L      ++  GV Y +   + T + +    +   L+V   +R+D   L
Sbjct: 1   MIDYIKGQIGELTPTSCTLETCGVGYELLISLNTYTAIQDRKE-AKLYVYEVIREDAYLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +RQ F LL SV GVG + A  +LS  +  EL   I ++N K++  + GI  K 
Sbjct: 60  YGFSTKQERQLFTLLISVSGVGGQTAKVILSSFSPGELANIIQMENVKLLRGVKGIGPKA 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K + +            ++ A      +    A+SAL  LG+    +   
Sbjct: 120 AQRIVLDLKDKVVGIEG------GTTVQQGAANAVNANAVAEAVSALTTLGFPPAASQKC 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++L++  N+    QII+ AL+ +
Sbjct: 174 VAALLQENPNLP-IEQIIKQALKLL 197


>gi|94991379|ref|YP_599479.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes
           MGAS10270]
 gi|123382379|sp|Q1JEH4|RUVA_STRPD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|94544887|gb|ABF34935.1| Holliday junction DNA helicase ruvA [Streptococcus pyogenes
           MGAS10270]
          Length = 198

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 93/205 (45%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ Y+I       S    +    T+++   +R+D   L
Sbjct: 1   MYDYIKGQLTKITAKYIVVEANGLGYMINV-ANPYSFTDSVNQLVTIYLHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK       V+      + +     +  +    AI AL+ LGY   +    
Sbjct: 120 AQQMVLDLAGKF------VEAPQETGHTKARSNKAGNTQLDEAIEALLALGYKAKELKK- 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +  ++    A   Q I+ AL+ +
Sbjct: 173 IRAFFEETSETA--EQYIKSALKLL 195


>gi|315303293|ref|ZP_07873928.1| holliday junction DNA helicase RuvA [Listeria ivanovii FSL F6-596]
 gi|313628340|gb|EFR96838.1| holliday junction DNA helicase RuvA [Listeria ivanovii FSL F6-596]
          Length = 201

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 95/205 (46%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG I  +  +Y++++   + Y I       S     G    +F+  H+R+D I L
Sbjct: 1   MYDYIKGIITTITPEYIVVETGQIGYQI-ITGNPFSFQHLEGTETQVFLYQHVREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L SV G+G + A+ +++      L+ +I  ++   + + P +  K 
Sbjct: 60  FGFQSTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLITAIESEDDVYLTKFPSVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK +    VV  D+     E   +  +      A+ AL  LGY   +    
Sbjct: 120 ARQIILDLKGKLV---DVVTSDIVYNTPENDIVSGLAPALEEAVLALEALGYSSRELKKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  ++K+E         I+LAL+ +
Sbjct: 177 IPKLVKEE--DLTSDAYIKLALKLM 199


>gi|94987628|ref|YP_595561.1| Holliday junction DNA helicase RuvA [Lawsonia intracellularis
           PHE/MN1-00]
 gi|123262079|sp|Q1MP37|RUVA_LAWIP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|94731877|emb|CAJ55240.1| Holliday junction resolvasome, DNA-binding subunit [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 199

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 97/206 (47%), Gaps = 11/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  ++G I    E   ++    G+ Y ++    T S L   G+    ++   +R+D   
Sbjct: 1   MIAYLEGYIAEFGETSCVVATSSGIGYEVFLTTPTRSTLPNKGEQVRFYICHIVREDIQE 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF +  +RQ F++L S+  VGAR A+ +LS     +L + +I ++   + ++ GI  K
Sbjct: 61  LFGFETWDERQTFIVLTSISKVGARTALNMLSTFRPNDLRQCVIEEDIFALTRVSGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A  I  ELK K           +   +   +      S   + ++ L  LGY +++++ 
Sbjct: 121 TAQHIFLELKYKLQ---------IDGNSTTSSSPSIGQSLFYDILTGLQGLGYTKEESSV 171

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            + SVL+ E ++ D    +R  L+ +
Sbjct: 172 VIKSVLQHEPDL-DVGSALRRCLKQL 196


>gi|254451002|ref|ZP_05064439.1| Holliday junction DNA helicase RuvA [Octadecabacter antarcticus
           238]
 gi|198265408|gb|EDY89678.1| Holliday junction DNA helicase RuvA [Octadecabacter antarcticus
           238]
          Length = 231

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 64/229 (27%), Positives = 116/229 (50%), Gaps = 24/229 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G +E    D+VLIDV+GV YI++   R ++ L ++G+  +L+ +  +R+D ++L
Sbjct: 1   MIGRIAGRLEYRAIDHVLIDVKGVGYIVFVSDRVMATLPRVGEGVSLYTDLLVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++W  LL SVQG+GA+ ++ +L  + A  +  SI + +   +A   G+  K 
Sbjct: 61  FGFTTLVEKEWHRLLMSVQGIGAKASLAILGTLGADGVSRSIAMGDWAAVATAKGVGPKT 120

Query: 121 ASRIMTELKGK-----------------------AISLSSVVQQDMSCVNKEQAHICSMP 157
           A +++ +LK K                         + +       + V++         
Sbjct: 121 AKKVILDLKDKAHGVMAMAGTAAGAAPAAGGGASVSADAETDTDMHAVVDRYDGTAAGNG 180

Query: 158 SFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           +     +SAL NLGYG   A  AV     +  + AD + +IR AL+ ++
Sbjct: 181 AAQSETLSALSNLGYGPSDAAGAVAQAAVEN-DGADTATLIRAALKLLA 228


>gi|260558373|ref|ZP_05830569.1| Holliday junction DNA helicase RuvA [Enterococcus faecium C68]
 gi|260075547|gb|EEW63853.1| Holliday junction DNA helicase RuvA [Enterococcus faecium C68]
          Length = 200

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 89/205 (43%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +  +   Y++++   + Y I           K+     ++V   +R+D   L
Sbjct: 1   MYEYLTGVVTFINPYYIVVETNSIGYQIAL-GNPYRYSSKLNQKIKIYVHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  ++Q F+ L SV G+G + A+ +++    + L++++   +   + + PG+  K 
Sbjct: 60  YGFDSLEEKQLFLRLVSVSGIGPKSALAIMASEDHSGLIQAVESSDVTYLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   LS      +              +    A+ AL  LGY   +    
Sbjct: 120 AQQMILDLKGKFGELSIDTPFSLFDEAN-----TKDATALSEAMEALSALGYSDREIKRV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +  KE +     + +R AL+ +
Sbjct: 175 EKQL--KEVDNQTTDEYLRQALKLM 197


>gi|329848091|ref|ZP_08263119.1| holliday junction DNA helicase RuvA [Asticcacaulis biprosthecum
           C19]
 gi|328843154|gb|EGF92723.1| holliday junction DNA helicase RuvA [Asticcacaulis biprosthecum
           C19]
          Length = 201

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 112/205 (54%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +  + ++  +++  GV YI+ C IRTL+ + K      L +++  R+D  RL
Sbjct: 1   MIGRLRGPLLEVGDEDAVVEAGGVGYIVRCGIRTLAAMPKPDTEVILHIDSQTREDGTRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +RQ F  L  VQGVG + A+ VL  ++  +L +++   +   + +  G+  K+
Sbjct: 61  YGFLNKDERQAFQALLGVQGVGPKAALAVLDVLSPGQLAQAVAQDDKASVGRANGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELKGKA++ ++     +      +A +         +++AL+ LG  + QA  A
Sbjct: 121 ALRIVVELKGKALTSATFEPIALKPAEPVKASVNG------ESVAALIGLGISETQARLA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V + ++     A    +IR AL+ +
Sbjct: 175 VEAAIQTLGADAALPAVIRTALKNL 199


>gi|221141089|ref|ZP_03565582.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|302751470|gb|ADL65647.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus str. JKD6008]
          Length = 200

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 50/204 (24%), Positives = 95/204 (46%), Gaps = 7/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  LY  +V+++  GV Y I  P  + S    +     +     +R+D   L
Sbjct: 1   MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYSFQKHLDHEVLIHTSLIVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ ++  F+ L  V G+G + A+ +L+  T  E+  +I  +N   + + PGI  K 
Sbjct: 60  YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK      + ++D   + +  A       F   A+ AL  LGY + +    
Sbjct: 120 ARQIVLDLKGKVK----ITEEDSDSLLQVDATSTVQDQFVQEAMLALEALGYSKRELAKV 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
             ++ K + +     + ++  L+ 
Sbjct: 176 EKTLNKNKYD--SVDEAVKAGLQL 197


>gi|49483886|ref|YP_041110.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257425766|ref|ZP_05602190.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257428426|ref|ZP_05604824.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|282904222|ref|ZP_06312110.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus C160]
 gi|282906048|ref|ZP_06313903.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282908961|ref|ZP_06316779.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282911278|ref|ZP_06319080.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282914447|ref|ZP_06322233.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus M899]
 gi|282919416|ref|ZP_06327151.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus C427]
 gi|282924793|ref|ZP_06332459.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus C101]
 gi|283958402|ref|ZP_06375853.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293503520|ref|ZP_06667367.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510539|ref|ZP_06669244.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus M809]
 gi|293537082|ref|ZP_06671762.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295428217|ref|ZP_06820849.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297590815|ref|ZP_06949453.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus
           aureus subsp. aureus MN8]
 gi|56749557|sp|Q6GG62|RUVA_STAAR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|49242015|emb|CAG40713.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257271460|gb|EEV03606.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257275267|gb|EEV06754.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|282313159|gb|EFB43555.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus C101]
 gi|282317226|gb|EFB47600.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus C427]
 gi|282321628|gb|EFB51953.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus M899]
 gi|282324973|gb|EFB55283.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282327225|gb|EFB57520.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282331340|gb|EFB60854.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282595840|gb|EFC00804.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus C160]
 gi|283790551|gb|EFC29368.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|290919927|gb|EFD96995.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291095186|gb|EFE25451.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466430|gb|EFF08951.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus M809]
 gi|295128575|gb|EFG58209.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297575701|gb|EFH94417.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus
           aureus subsp. aureus MN8]
 gi|312437891|gb|ADQ76962.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|315195545|gb|EFU25932.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 200

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 49/204 (24%), Positives = 94/204 (46%), Gaps = 7/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  LY  +V+++  GV Y I  P  +      +     +     +R+D   L
Sbjct: 1   MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKHLDHEVLIHTSLIVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ ++  F+ L  V G+G + A+ +L+  T  E+  +I  +N   + + PGI  K 
Sbjct: 60  YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK      + ++D   + +  A       F   A+ AL  LGY + +    
Sbjct: 120 ARQIVLDLKGKVK----ITEEDSDSLLQVDATSTEQDQFVQEAMLALEALGYSKRELAKV 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
             ++ K + +     + ++  L+ 
Sbjct: 176 EKTLNKNKYD--SVDEAVKAGLQL 197


>gi|317154312|ref|YP_004122360.1| Holliday junction DNA helicase RuvA [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316944563|gb|ADU63614.1| Holliday junction DNA helicase RuvA [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 203

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 98/207 (47%), Gaps = 9/207 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG ++G +   ++  +++    GV Y +  P   L+ L   G   +LFV T + +  I 
Sbjct: 1   MIGYLQGTLLAAHDKGLVLLTPGGVGYEVAAPTSVLARLPGRGGEVSLFVHTQVGEKAID 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGFL   D   F  L S+  +G + A+ +LS   A  L E    +++  ++ +PGI  K
Sbjct: 61  LFGFLESDDLDLFRTLISIDKLGPKKALAILSMFDAEHLREVAYREDATTLSTVPGIGPK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +I+  LK K   LS          ++  A +       ++ ++ L  LGY +D+   
Sbjct: 121 SAKQILWHLKDKVNKLSP-------APSRGSAKVEGPRGEYLDTLAGLKGLGYSEDEVRP 173

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
            ++ +   E ++ D +  IR  LR I+
Sbjct: 174 MILEIFDAEPDL-DAAGAIRATLRKIA 199


>gi|306826474|ref|ZP_07459785.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           pyogenes ATCC 10782]
 gi|304431333|gb|EFM34331.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           pyogenes ATCC 10782]
          Length = 198

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 91/205 (44%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ Y+I       S    +    T+++   +R+D   L
Sbjct: 1   MYDYIKGQLTKITAKYIVVEANGLGYMINV-ANPYSFTDSVNQLVTIYLHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK       V+      N +     +  +    AI AL+ LGY   +    
Sbjct: 120 AQQMVLDLAGKF------VEAPQETGNTKARSNKAGNTQLDEAIEALLALGYKATELKK- 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +    E       Q I+ AL+ +
Sbjct: 173 IRAFF--EGTSETAEQYIKSALKLL 195


>gi|269941127|emb|CBI49513.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus TW20]
          Length = 200

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 7/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  LY  +V+++  GV Y I  P  +      +     +     +R+D   L
Sbjct: 1   MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKHLDHEVLIHTSLIVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF S+ ++  F+ L  V G+G + A+ +L+  T  E+  +I  +N   + + PGI  K 
Sbjct: 60  HGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK      + ++D   + +  A       F   A+ AL  LGY + +    
Sbjct: 120 ARQIVLDLKGKVK----ITEEDSDSLLQVDATSTVQDQFVQEAMLALEALGYSKRELAK- 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V   L K K      + ++  L+ 
Sbjct: 175 VEKTLNKNK-YDSVDEAVKAGLQL 197


>gi|154493758|ref|ZP_02033078.1| hypothetical protein PARMER_03099 [Parabacteroides merdae ATCC
           43184]
 gi|154086508|gb|EDN85553.1| hypothetical protein PARMER_03099 [Parabacteroides merdae ATCC
           43184]
          Length = 197

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 101/205 (49%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I  L    ++++  G+ Y +   + T +          ++V   +R+D   L
Sbjct: 1   MIEYIKGEIVELTPARMILECAGIGYELNISLNTYTFYNGKPTG-KIYVYEVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R+ F++L SV GVG   A  +LS ++ +EL+  I  +N   +  + GI +K 
Sbjct: 60  FGFAGKDERELFLMLTSVSGVGPNTARMILSSLSPSELIRVIADKNETALTSVKGIGLKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K   +  +       V    + + +  +    A++ALV LG+ +  +  A
Sbjct: 120 AQRILVDLKNKVKPIEGM------TVTGGSSSVAASGAVTEEAVAALVMLGFQKAASQKA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +LK    +A   Q+I+ ALR +
Sbjct: 174 VNLILKGSPALA-VEQVIKTALRML 197


>gi|217964320|ref|YP_002349998.1| holliday junction DNA helicase RuvA [Listeria monocytogenes HCC23]
 gi|290893935|ref|ZP_06556911.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes FSL
           J2-071]
 gi|254766966|sp|B8DHL5|RUVA_LISMH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|217333590|gb|ACK39384.1| holliday junction DNA helicase RuvA [Listeria monocytogenes HCC23]
 gi|290556473|gb|EFD90011.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes FSL
           J2-071]
 gi|307571114|emb|CAR84293.1| holliday junction DNA helicase [Listeria monocytogenes L99]
 gi|313608655|gb|EFR84502.1| holliday junction DNA helicase RuvA [Listeria monocytogenes FSL
           F2-208]
          Length = 201

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 96/205 (46%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +  +Y++++   + Y I       S     G    +F+  H+R+D I L
Sbjct: 1   MYDYIKGTVTTITPEYIVVEAGQIGYQI-ITGNPFSFQRLEGTEAQVFLYQHVREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L SV G+G + A+ +++      L+ +I  ++   + + P +  K 
Sbjct: 60  FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLISAIESEDDVYLTKFPSVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   L+ VV  ++  V  E   +  +      A+ AL  LGY   +    
Sbjct: 120 ARQIILDLKGK---LADVVASEIVYVAPENDMVAGLSPQLEEAVLALEALGYSTRELKKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  + K+E         I+LAL+ +
Sbjct: 177 IPKLAKEE--DLTSDAYIKLALQLM 199


>gi|303249145|ref|ZP_07335385.1| Holliday junction DNA helicase RuvA [Desulfovibrio fructosovorans
           JJ]
 gi|302489470|gb|EFL49417.1| Holliday junction DNA helicase RuvA [Desulfovibrio fructosovorans
           JJ]
          Length = 202

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 57/207 (27%), Positives = 97/207 (46%), Gaps = 10/207 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG I+G +    + Y ++    GV Y +  P    + L   G   +LFV T +R+D   
Sbjct: 1   MIGYIEGRVVVRRDRYAIVLTPGGVGYELELPGPVAASLPAPGGQASLFVHTVVREDAFE 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF +  DR+ F +L  +  +G + A+ +LSR TA +L   +   +   + Q+ GI  K
Sbjct: 61  LFGFATIEDRETFRILIGITKLGPKTALAILSRYTADDLARIVATADLDALTQVSGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ EL  K    ++      + +               + ++ L NLGY +  A  
Sbjct: 121 SAQRILIELTYKLEGQAATAAAVTAPI--------PGGGVLADVVAGLTNLGYPEADARR 172

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
              +VL  E ++ D +  +R AL+ ++
Sbjct: 173 VGTAVLDDEPDL-DVAGALRQALKRLA 198


>gi|257431064|ref|ZP_05607443.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257433750|ref|ZP_05610108.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257436665|ref|ZP_05612709.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus M876]
 gi|257278267|gb|EEV08909.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257281843|gb|EEV11980.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257284016|gb|EEV14139.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus M876]
          Length = 203

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 49/204 (24%), Positives = 94/204 (46%), Gaps = 7/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  LY  +V+++  GV Y I  P  +      +     +     +R+D   L
Sbjct: 4   MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKHLDHEVLIHTSLIVREDAQLL 62

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ ++  F+ L  V G+G + A+ +L+  T  E+  +I  +N   + + PGI  K 
Sbjct: 63  YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 122

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK      + ++D   + +  A       F   A+ AL  LGY + +    
Sbjct: 123 ARQIVLDLKGKVK----ITEEDSDSLLQVDATSTEQDQFVQEAMLALEALGYSKRELAKV 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
             ++ K + +     + ++  L+ 
Sbjct: 179 EKTLNKNKYD--SVDEAVKAGLQL 200


>gi|312196177|ref|YP_004016238.1| Holliday junction DNA helicase RuvA [Frankia sp. EuI1c]
 gi|311227513|gb|ADP80368.1| Holliday junction DNA helicase RuvA [Frankia sp. EuI1c]
          Length = 205

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 51/206 (24%), Positives = 93/206 (45%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +     +++V GV  ++ C   TL+ L  +G+   L     +R+ ++ L
Sbjct: 1   MIASVAGTVLSVSPTAAVVEVGGVGLLVQCTPATLAGL-AVGEPARLATALVVRETELTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  +  LQ   GVG ++A  VL  +   E+  ++  ++   + ++PG+  K 
Sbjct: 60  YGFADADERDVYETLQGAAGVGPKLAQAVLGVLAPDEVRRAVADEDLAALTRVPGVGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K            +   +      + P        AL  LGY   +A  A
Sbjct: 120 AQRIVLDLKDKLGPPVGGAPARQAAGGRVLPAPRTAP---EQVTDALGGLGYSTREAEDA 176

Query: 181 VVSVLKKEK-NIADDSQIIRLALRAI 205
           V +VL  +  +  D S ++R AL  +
Sbjct: 177 VAAVLAGDGTDTDDVSAMLRAALAFL 202


>gi|197106547|ref|YP_002131924.1| Holliday junction DNA helicase RuvA [Phenylobacterium zucineum
           HLK1]
 gi|229560113|sp|B4R9Z1|RUVA_PHEZH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|196479967|gb|ACG79495.1| Holliday junction DNA helicase RuvA [Phenylobacterium zucineum
           HLK1]
          Length = 204

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 110/206 (53%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD-QIR 59
           MIG+++G +  + E+  LIDV GV Y++ C  RTLS L  +G+   + VE+   +   + 
Sbjct: 1   MIGRLRGLVAEVGEEDALIDVMGVGYVVRCGSRTLSRLPAVGEETVIHVESVFGEQTGVT 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL   +R+ F+ L+++QGVG + A+ VL  +   EL  ++  ++   +A+  G+  K
Sbjct: 61  LYGFLGRDERRAFVTLRTIQGVGPKAALAVLDVLAPPELAAAVAREDKAAVARANGVGPK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           +A RI+ ELK K IS   V          +   +    S A  A++AL+ LG  + QA  
Sbjct: 121 LAQRIVVELKDKPISDGPVAAFHAQATTPQPIKV----SAAGEAVAALMGLGIAEPQARR 176

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            V S   +    A+   +I+ AL+ +
Sbjct: 177 VVESAALRLGEEAEPPALIKAALQEL 202


>gi|282916910|ref|ZP_06324668.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus D139]
 gi|283770716|ref|ZP_06343608.1| Holliday junction ATP-dependent DNA helicase ruvA [Staphylococcus
           aureus subsp. aureus H19]
 gi|282319397|gb|EFB49749.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus D139]
 gi|283460863|gb|EFC07953.1| Holliday junction ATP-dependent DNA helicase ruvA [Staphylococcus
           aureus subsp. aureus H19]
          Length = 200

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 52/204 (25%), Positives = 94/204 (46%), Gaps = 7/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  LY  +V+++  GV Y I  P  +      +     +     +R+D   L
Sbjct: 1   MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKHLDHEVLIHTSLIVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ ++  F+ L  V G+G + A+ +L+  T  E+  +I  +N   + + PGI  K 
Sbjct: 60  YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK      + ++D   + +  A       F   A+ AL  LGY + + +  
Sbjct: 120 ARQIVLDLKGKVK----ITEEDSDSLLQVDATSTVQDQFVQEAMLALEALGYSKRELSK- 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V   L K K      + ++  L+ 
Sbjct: 175 VEKTLNKNK-YDSVDEAVKAGLQL 197


>gi|162146622|ref|YP_001601081.1| Holliday junction DNA helicase RuvA [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209543386|ref|YP_002275615.1| Holliday junction DNA helicase RuvA [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|189045754|sp|A9HAV7|RUVA_GLUDA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|161785197|emb|CAP54743.1| putative holliday junction ATP-dependent DNA helicase ruvA
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531063|gb|ACI51000.1| Holliday junction DNA helicase RuvA [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 200

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 101/206 (49%), Gaps = 7/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +  D  ++DV GV Y+++   RTLS L +  D   + VET +R+D   L
Sbjct: 1   MIAHLTGLVGQMESDRCVVDVGGVGYLVHASTRTLSALPRPPDVTRVLVETVVREDAFLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R WF LL +VQGVGA+VA+ +LS ++  +L   I   +   + ++ G+  ++
Sbjct: 61  YGFAEAAERDWFRLLTTVQGVGAKVALAILSALSPGDLAGVIAAADKASLTRVSGVGARL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TEL+ KA  + +     ++                           + + +A   
Sbjct: 121 AERILTELRDKAGRMPAGPGVTIAAPPASGGVEADALLALAGLG-------FRRAEAQPV 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  +L +    AD   +IR +LR ++
Sbjct: 174 VGRILARLDGKADLDVVIRESLRELA 199


>gi|57650523|ref|YP_186536.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus COL]
 gi|82751240|ref|YP_416981.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus RF122]
 gi|87160146|ref|YP_494293.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88195453|ref|YP_500257.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151221756|ref|YP_001332578.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|161509868|ref|YP_001575527.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|253733107|ref|ZP_04867272.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|258450532|ref|ZP_05698594.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A5948]
 gi|262048631|ref|ZP_06021514.1| holliday junction DNA helicase [Staphylococcus aureus D30]
 gi|262051292|ref|ZP_06023516.1| holliday junction DNA helicase [Staphylococcus aureus 930918-3]
 gi|282920191|ref|ZP_06327916.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9765]
 gi|284024698|ref|ZP_06379096.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus 132]
 gi|304380761|ref|ZP_07363429.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|71153735|sp|Q5HFC1|RUVA_STAAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|123098028|sp|Q2FXT3|RUVA_STAA8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|123740965|sp|Q2YT88|RUVA_STAAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|123763287|sp|Q2FG85|RUVA_STAA3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|172048928|sp|A6QHI4|RUVA_STAAE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189045775|sp|A8Z2H0|RUVA_STAAT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|57284709|gb|AAW36803.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus COL]
 gi|82656771|emb|CAI81200.1| Holliday junction DNA helicase [Staphylococcus aureus RF122]
 gi|87126120|gb|ABD20634.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87203011|gb|ABD30821.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|150374556|dbj|BAF67816.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|160368677|gb|ABX29648.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|253728863|gb|EES97592.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|257861690|gb|EEV84489.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A5948]
 gi|259160929|gb|EEW45949.1| holliday junction DNA helicase [Staphylococcus aureus 930918-3]
 gi|259163278|gb|EEW47837.1| holliday junction DNA helicase [Staphylococcus aureus D30]
 gi|282594539|gb|EFB99524.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9765]
 gi|283470918|emb|CAQ50129.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus ST398]
 gi|298694921|gb|ADI98143.1| Holliday junction DNA helicase [Staphylococcus aureus subsp. aureus
           ED133]
 gi|302333315|gb|ADL23508.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus JKD6159]
 gi|304340698|gb|EFM06630.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|315198657|gb|EFU28985.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus CGS01]
 gi|320140471|gb|EFW32325.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320144010|gb|EFW35779.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|323440805|gb|EGA98514.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus O11]
 gi|323442846|gb|EGB00471.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus O46]
 gi|329314316|gb|AEB88729.1| Holliday junction ATP-dependent DNA helicase ruvA [Staphylococcus
           aureus subsp. aureus T0131]
 gi|329728425|gb|EGG64862.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus 21189]
 gi|329733154|gb|EGG69491.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 200

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 52/204 (25%), Positives = 93/204 (45%), Gaps = 7/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  LY  +V+++  GV Y I  P  +      +     +     +R+D   L
Sbjct: 1   MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKHLDHEVLIHTSLIVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ ++  F+ L  V G+G + A+ +L+  T  E+  +I  +N   + + PGI  K 
Sbjct: 60  YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK      + ++D   + +  A       F   A+ AL  LGY + +    
Sbjct: 120 ARQIVLDLKGKVK----ITEEDSDSLLQVDATSTVQDQFVQEAMLALEALGYSKRELAK- 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V   L K K      + ++  L+ 
Sbjct: 175 VEKTLNKNK-YDSVDEAVKAGLQL 197


>gi|296139644|ref|YP_003646887.1| Holliday junction DNA helicase RuvA [Tsukamurella paurometabola DSM
           20162]
 gi|296027778|gb|ADG78548.1| Holliday junction DNA helicase RuvA [Tsukamurella paurometabola DSM
           20162]
          Length = 199

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 99/205 (48%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+V+++  GV Y +     T   L + G   +L     +R+D + L
Sbjct: 1   MIASLRGEVRHIGLDHVVVECAGVGYKVLVAPATAGALTR-GSEGSLLTSMVVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     ++ F LLQ+VQGVG R+AM  ++ +   ++  +I   + K +  IPGI  ++
Sbjct: 60  YGFTDSPQQELFHLLQTVQGVGPRLAMAAIAVLEPAQMQSAIASGDIKTLCLIPGIGKRV 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  ELK K            + V +           A   + AL  LG+   QA  A
Sbjct: 120 AERIHIELKDKV-------AAPSTSVGQAGTSNAPSGGTAQQLLDALEGLGFTPKQAEPA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V + ++   +    S+++R AL+++
Sbjct: 173 VAAAVEAGPDKP-VSELLRDALKSL 196


>gi|15675869|ref|NP_270043.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes M1 GAS]
 gi|21911339|ref|NP_665607.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes
           MGAS315]
 gi|28896713|ref|NP_803063.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes SSI-1]
 gi|71911615|ref|YP_283165.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes
           MGAS5005]
 gi|94995290|ref|YP_603388.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes
           MGAS10750]
 gi|54039576|sp|P66752|RUVA_STRP3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|54042204|sp|P66751|RUVA_STRP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|123257497|sp|Q1J492|RUVA_STRPF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|13623103|gb|AAK34764.1| putative Holiday junction DNA helicase [Streptococcus pyogenes M1
           GAS]
 gi|21905554|gb|AAM80410.1| putative Holiday junction DNA helicase [Streptococcus pyogenes
           MGAS315]
 gi|28811967|dbj|BAC64896.1| putative Holliday junction DNA helicase [Streptococcus pyogenes
           SSI-1]
 gi|71854397|gb|AAZ52420.1| holliday junction DNA helicase [Streptococcus pyogenes MGAS5005]
 gi|94548798|gb|ABF38844.1| Holliday junction DNA helicase ruvA [Streptococcus pyogenes
           MGAS10750]
          Length = 198

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 91/205 (44%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ Y+I       S    +    T+++   +R+D   L
Sbjct: 1   MYDYIKGQLTKITAKYIVVEANGLGYMINV-ANPYSFTDSVNQLVTIYLHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK       V+      + +     +  +    AI AL+ LGY   +    
Sbjct: 120 AQQMVLDLAGKF------VEAPQETGHTKARSNKAGNTQLDEAIEALLALGYKAKELKK- 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +    E       Q I+ AL+ +
Sbjct: 173 IRAFF--EGTSETAEQYIKSALKLL 195


>gi|302335491|ref|YP_003800698.1| Holliday junction DNA helicase subunit RuvA [Olsenella uli DSM
           7084]
 gi|301319331|gb|ADK67818.1| Holliday junction DNA helicase subunit RuvA [Olsenella uli DSM
           7084]
          Length = 209

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 52/207 (25%), Positives = 97/207 (46%), Gaps = 4/207 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDF-CTLFVETHMRQDQIR 59
           MI ++ G +  +   +V++DV G+ Y +     T + L  +G+   TL     +++  + 
Sbjct: 1   MIVQLTGTLVEVLPTHVIVDVGGIGYELGVSATTAASLPAVGEAGVTLLARMLVKESAVE 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF S  +R  F  L  V GVG ++A+ VLS  +   L   ++ Q++  +A +PG+  K
Sbjct: 61  LYGFASREERAVFDRLVGVSGVGPKLALAVLSTFSPASLATVVVTQDATRMATVPGVGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQ-QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
            A R++ EL+      + +     MS          +  S   +A SAL+ +G+   +A 
Sbjct: 121 KAQRLLMELQDVFTRDTELRGLVGMSEPAPRSPLANTAESVQSDATSALLAMGFTPQEAE 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
            A+     ++       + I  ALR +
Sbjct: 181 LALRG--HEDAGALTVEKAISYALRHL 205


>gi|302874957|ref|YP_003843590.1| Holliday junction DNA helicase RuvA [Clostridium cellulovorans
           743B]
 gi|307690425|ref|ZP_07632871.1| Holliday junction DNA helicase RuvA [Clostridium cellulovorans
           743B]
 gi|302577814|gb|ADL51826.1| Holliday junction DNA helicase RuvA [Clostridium cellulovorans
           743B]
          Length = 194

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 100/205 (48%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG  +G+ +DY++I+  G+ Y I+    T++ L  I     ++++  +R+D I L
Sbjct: 1   MYEYIKGIYKGIKKDYLIIENNGIGYKIFTSGGTIAALPSIDKEVFIYLKQIVREDFIGL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  + + F +L ++ GVG + A+ +LS  T   L  +I   +   I + PGI  K 
Sbjct: 61  YGFATQEELELFTMLLNINGVGTKAALSLLSIGTVNNLKYAIATSDENFITKAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K      +            +       +   A+ AL+ LGYG+ +A  A
Sbjct: 121 AQRIILELKDKLSKEVPL---------SHTSENIITNVYVDEALEALIALGYGEKEAEKA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +V     +     +II+  L+ +
Sbjct: 172 IANV----NHNMSIEEIIKSCLQLL 192


>gi|318075775|ref|ZP_07983107.1| Holliday junction DNA helicase RuvA [Streptomyces sp. SA3_actF]
          Length = 210

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 52/189 (27%), Positives = 91/189 (48%), Gaps = 6/189 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L     +++V G+   + C   TLS L +IG+   +     +R+D + L
Sbjct: 1   MIAFVSGPVAALGPTSAVVEVGGIGMAVQCTPHTLSTL-RIGEQARIATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+ ++   L  ++   + K +  +PGI  K 
Sbjct: 60  YGFADDDERQTFELLQTASGVGPRLAQAMLATLSPDALRLAVSTADEKALTAVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK +              +  ++      P +     +ALV LGY   +A  A
Sbjct: 120 AQKLILELKDRLGQ-----PLGTGTLGAQRRAAAGPPPWTEQLHTALVGLGYQPREAEEA 174

Query: 181 VVSVLKKEK 189
           V +V  + +
Sbjct: 175 VEAVTPQAE 183


>gi|189183542|ref|YP_001937327.1| Holliday junction DNA helicase RuvA [Orientia tsutsugamushi str.
           Ikeda]
 gi|229560111|sp|B3CRA9|RUVA_ORITI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189180313|dbj|BAG40093.1| holliday junction DNA helicase RuvA [Orientia tsutsugamushi str.
           Ikeda]
          Length = 205

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 64/205 (31%), Positives = 119/205 (58%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI K+KG ++ + + Y++ID+ GV Y +Y   +TL  L  + G   +LF+ETH+R+D+I 
Sbjct: 1   MIAKLKGILDSITDSYLIIDINGVGYQVYSSGKTLMKLIKEEGSIVSLFIETHVREDRIH 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGFL + ++  F +LQSV G+G ++A+ +LS +T  +L  +I  QN   +  I G+  K
Sbjct: 61  LFGFLDNTEKVAFNMLQSVSGIGTKMALHILSNLTPHQLQIAISSQNRHQLKAISGVGPK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           +  R+M EL+ K  +++++     + +        +  +   +AI+AL+ LG  + +AT 
Sbjct: 121 LIDRLMIELRDKVANINTIANN--TSLATLSTDSNTHDNILSDAITALIALGISRAEATQ 178

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +  +     +I   ++++R AL+ 
Sbjct: 179 ILSDIYALSPSI-SVNELVRTALQR 202


>gi|258424067|ref|ZP_05686949.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9635]
 gi|294848671|ref|ZP_06789417.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9754]
 gi|257845688|gb|EEV69720.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9635]
 gi|294824697|gb|EFG41120.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9754]
          Length = 203

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 49/204 (24%), Positives = 94/204 (46%), Gaps = 7/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  LY  +V+++  GV Y I  P  +      +     +     +R+D   L
Sbjct: 4   MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKHLDHEVLIHTSLIVREDAQLL 62

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ ++  F+ L  V G+G + A+ +L+  T  E+  +I  +N   + + PGI  K 
Sbjct: 63  YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 122

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK      + ++D   + +  A       F   A+ AL  LGY + +    
Sbjct: 123 ARQIVLDLKGKVK----ITEEDSDSLLQVDATSTVQDQFVQEAMLALEALGYSKRELAKV 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
             ++ K + +     + ++  L+ 
Sbjct: 179 EKTLNKNKYD--SVDEAVKAGLQL 200


>gi|46907761|ref|YP_014150.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47094257|ref|ZP_00231966.1| holliday junction DNA helicase RuvA [Listeria monocytogenes str. 4b
           H7858]
 gi|226224134|ref|YP_002758241.1| Holliday junction DNA helicase (ruvA) [Listeria monocytogenes
           Clip81459]
 gi|254824408|ref|ZP_05229409.1| holliday junction DNA helicase RuvA [Listeria monocytogenes FSL
           J1-194]
 gi|254852157|ref|ZP_05241505.1| holliday junction DNA helicase RuvA [Listeria monocytogenes FSL
           R2-503]
 gi|254931468|ref|ZP_05264827.1| holliday junction DNA helicase RuvA [Listeria monocytogenes
           HPB2262]
 gi|254992897|ref|ZP_05275087.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes FSL
           J2-064]
 gi|255520701|ref|ZP_05387938.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes FSL
           J1-175]
 gi|300764800|ref|ZP_07074790.1| holliday junction DNA helicase RuvA [Listeria monocytogenes FSL
           N1-017]
 gi|67461453|sp|Q71ZD7|RUVA_LISMF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|259495649|sp|C1KVI0|RUVA_LISMC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|46881030|gb|AAT04327.1| holliday junction DNA helicase RuvA [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47017363|gb|EAL08187.1| holliday junction DNA helicase RuvA [Listeria monocytogenes str. 4b
           H7858]
 gi|225876596|emb|CAS05305.1| Putative Holliday junction DNA helicase (ruvA) [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258605460|gb|EEW18068.1| holliday junction DNA helicase RuvA [Listeria monocytogenes FSL
           R2-503]
 gi|293583020|gb|EFF95052.1| holliday junction DNA helicase RuvA [Listeria monocytogenes
           HPB2262]
 gi|293593643|gb|EFG01404.1| holliday junction DNA helicase RuvA [Listeria monocytogenes FSL
           J1-194]
 gi|300514476|gb|EFK41533.1| holliday junction DNA helicase RuvA [Listeria monocytogenes FSL
           N1-017]
 gi|328474893|gb|EGF45693.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes 220]
 gi|332311975|gb|EGJ25070.1| Holliday junction ATP-dependent DNA helicase ruvA [Listeria
           monocytogenes str. Scott A]
          Length = 201

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 96/205 (46%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +  +Y++++   + Y I       S     G    +F+  H+R+D I L
Sbjct: 1   MYDYIKGTVTTITPEYIVVEAGQIGYQI-ITGNPFSFQRLEGTEAQVFLYQHVREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L SV G+G + A+ +++      L+ +I  ++   + + P +  K 
Sbjct: 60  FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLISAIESEDDVYLTKFPSVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   L+ VV  ++  V  E   +  +      A+ AL  LGY   +    
Sbjct: 120 ARQIILDLKGK---LADVVASEIVYVAPENDMVAGLSPQLEEAVLALEALGYSTRELKKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  + K+E         I+LAL+ +
Sbjct: 177 IPKLSKEE--DLTSDAYIKLALQLM 199


>gi|108799233|ref|YP_639430.1| Holliday junction DNA helicase RuvA [Mycobacterium sp. MCS]
 gi|119868349|ref|YP_938301.1| Holliday junction DNA helicase motor protein [Mycobacterium sp.
           KMS]
 gi|126434891|ref|YP_001070582.1| Holliday junction DNA helicase RuvA [Mycobacterium sp. JLS]
 gi|123369347|sp|Q1B9R0|RUVA_MYCSS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230569|sp|A3PYW4|RUVA_MYCSJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230570|sp|A1UFA3|RUVA_MYCSK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|108769652|gb|ABG08374.1| Holliday junction DNA helicase subunit RuvA [Mycobacterium sp. MCS]
 gi|119694438|gb|ABL91511.1| Holliday junction DNA helicase RuvA [Mycobacterium sp. KMS]
 gi|126234691|gb|ABN98091.1| Holliday junction DNA helicase RuvA [Mycobacterium sp. JLS]
          Length = 196

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 91/205 (44%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +I+  GV Y +     TL+ L + G    L     +R+D + L
Sbjct: 1   MIASVRGEVIDIALDHAVIEAAGVGYKVMATPSTLATL-RRGTESRLVTAMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F  L  V GVG ++A+  L+   A  L +++   +   + ++PGI  + 
Sbjct: 60  YGFADADARDLFGTLLGVSGVGPKIALATLAVYDAPTLRQALADGDVTALTRVPGIGKRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K   +++                    +     + ALV LG+   QA  A
Sbjct: 120 AERMVLELRDKIGPVTTGAG----------VTAVGGHAVRGPVVEALVGLGFAAKQAEEA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              VL  + + A  S  +R AL  +
Sbjct: 170 CDKVLAADPD-ATTSSALRAALSML 193


>gi|312863970|ref|ZP_07724207.1| Holliday junction DNA helicase RuvA [Streptococcus vestibularis
           F0396]
 gi|311100536|gb|EFQ58742.1| Holliday junction DNA helicase RuvA [Streptococcus vestibularis
           F0396]
          Length = 196

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 86/205 (41%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++I+  G+ YII       S   ++     +++   +R D   L
Sbjct: 1   MYDYIKGTLVKITAKYIVIEANGLGYIITV-ANPYSFSDQLNQTIQVYLHQVIRDDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +++ F+ L SV G+G   A+ +++      LV ++   + K + + P I  K 
Sbjct: 60  FGFHTEDEKEVFLKLISVSGIGPTTALAIVAVDDNQGLVAAVDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK   L        +   K              A+ AL+ LGY   +    
Sbjct: 120 AQQMVLDLAGKFAEL-------PTETTKTTPSQPEGNHQLDEAMEALLALGYKAAEIKKV 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
                  E       Q I+ AL+ +
Sbjct: 173 ---KAFFEGTNETAEQYIKSALKML 194


>gi|229491976|ref|ZP_04385793.1| holliday junction DNA helicase RuvA [Rhodococcus erythropolis
           SK121]
 gi|229321108|gb|EEN86912.1| holliday junction DNA helicase RuvA [Rhodococcus erythropolis
           SK121]
          Length = 199

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 95/205 (46%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +I+  GV Y +     TL  L + G    LF    +R+D + L
Sbjct: 1   MIASVRGEVLDIALDHAVIEASGVGYRVNATPVTLGALHR-GSEARLFTTMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     +  F LLQ+V GVG R+AM  L+ +    L  ++   N   + ++PGI  + 
Sbjct: 60  YGFSDTESKDLFSLLQTVSGVGPRLAMATLAVLEPDALRRALSEGNLTALTRVPGIGKRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K  ++++        V        +  S     + AL  LG+   QA  A
Sbjct: 120 AERMVVELRDKVDAVATTAGAASGVV--------AGSSIRDQIVEALEGLGFPIKQAEQA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             SVL +    A  S  +R AL  +
Sbjct: 172 TDSVLAESPE-ATTSVALRSALSLL 195


>gi|300934559|ref|ZP_07149815.1| Holliday junction DNA helicase RuvA [Corynebacterium resistens DSM
           45100]
          Length = 208

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 102/207 (49%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     DYV+++  GV Y  +     +  L + G    +     +R+D   L
Sbjct: 1   MIASLRGTVIDKGLDYVVVECSGVGYHCHTTPAIVGTL-ERGTEAFVLTTLVVREDAQTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           + F     RQ F+ LQ V GVGARVA+ ++S +T  EL  ++   ++K + + PG+  ++
Sbjct: 60  YAFTDSDQRQTFLALQKVSGVGARVALAIMSVLTPAELAAAVAEGDAKTLQRAPGVGKRL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LKGK  +LSS V    +      +      S       ALV LG+ + +A + 
Sbjct: 120 AERMVVDLKGKLGALSSEVSTPGAP--SPDSPQGLSDSVREQVEEALVGLGFTEAKAAST 177

Query: 181 VVSVLK--KEKNIADDSQIIRLALRAI 205
           V   +   ++  + D S ++R AL  I
Sbjct: 178 VSQAVARTEDAGLLDASSLLRAALAQI 204


>gi|257455268|ref|ZP_05620503.1| holliday junction DNA helicase RuvA [Enhydrobacter aerosaccus SK60]
 gi|257447230|gb|EEV22238.1| holliday junction DNA helicase RuvA [Enhydrobacter aerosaccus SK60]
          Length = 206

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 97/207 (46%), Gaps = 4/207 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG I+G +  L    V++    GV Y I  P+     + ++    TL+    +R+D   
Sbjct: 1   MIGLIQGQVHHLMAPTVVVMTTAGVGYEIEMPLNAFCQV-QLNQSVTLWTHFLVREDAQL 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGFLS  DR+ F LL  V GVGA++A+ ++S +T  EL + ++  +   + +IPG+  K
Sbjct: 60  LFGFLSHSDREVFRLLLKVNGVGAKMALAMMSTVTVQELHQFVMNNDELALTRIPGVGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ ELK K   L        S     +    +         + L+ LGY   +A  
Sbjct: 120 TAQRLIVELKDKIKHLGDTSGFAPSL--PLETDSGNEGIIIAEVEAGLIALGYRDKEAQA 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           A+        +      +++ +L+ ++
Sbjct: 178 AIKLAKSAIDSPLTIQNLLKASLKNLA 204


>gi|229135245|ref|ZP_04264043.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           BDRD-ST196]
 gi|228648223|gb|EEL04260.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           BDRD-ST196]
          Length = 197

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 91/196 (46%), Gaps = 5/196 (2%)

Query: 10  EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69
           E +  +YV+ID  G+ Y I+ P        +      ++   ++R+D + L+GF +  +R
Sbjct: 2   EYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALYGFKTREER 59

Query: 70  QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
             F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K A +++ +LK
Sbjct: 60  LLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLK 119

Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189
           GK   +      D+    +              A+ AL  LGY + + +  V  +LK+  
Sbjct: 120 GKLADVVPDAFVDLFSDTESFDTKKGSSVELDEALEALRALGYAEREVSRVVPELLKE-- 177

Query: 190 NIADDSQIIRLALRAI 205
                 Q I+ AL  +
Sbjct: 178 -SLTTDQYIKKALSLL 192


>gi|260431115|ref|ZP_05785086.1| holliday junction DNA helicase RuvA [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260414943|gb|EEX08202.1| holliday junction DNA helicase RuvA [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 223

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 69/221 (31%), Positives = 120/221 (54%), Gaps = 16/221 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G I+    D++LIDV+GV YI+YC  RT++ L  +G+  +L+ +  +R+D ++L
Sbjct: 1   MIGKLTGRIDYRAADHLLIDVRGVGYIVYCSDRTMAALPGVGEAVSLYTDLVVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS ++++W  LL SVQGVGA+V++ +L  +    +  +I L +   +    G+  K 
Sbjct: 61  YGFLSLVEKEWHRLLCSVQGVGAKVSLAILGALGPDGVSRAIALGDWGAVKAAKGVGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA-------------- 166
           A RI+ +LK KA  + ++       ++   A +      A   + A              
Sbjct: 121 AQRIVLDLKDKAPGVMAMGGTVTEAMDGPVAEVVEPADPAPAPVRAPKPGAGAASAGALS 180

Query: 167 -LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
            L NLGYG  +A +AV        + A ++++IR AL+ ++
Sbjct: 181 ALSNLGYGPSEAASAVAEAAANLPD-AGEAELIRAALKLLA 220


>gi|78187612|ref|YP_375655.1| Holliday junction DNA helicase RuvA [Chlorobium luteolum DSM 273]
 gi|123743607|sp|Q3B219|RUVA_PELLD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|78167514|gb|ABB24612.1| Holliday junction DNA helicase subunit RuvA [Chlorobium luteolum
           DSM 273]
          Length = 200

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 51/202 (25%), Positives = 95/202 (47%), Gaps = 8/202 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G +  +  +  +++V G+ Y       T   L + G+   L+    +R+D ++L
Sbjct: 1   MYAYFRGRVVSVLPEEAVLEVSGIAYRFLISTGTSRSLPQAGNEAILYTHLSVREDALQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ ++Q F LL  V GVG ++A+ VLS +   E+ E+I+    + +  + G+  K 
Sbjct: 61  YGFSSEEEKQLFRLLLLVSGVGPKLALAVLSGLPVAEVHEAILANAPERLFGVTGVGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ EL+ + + LS                         +A +AL+ LG+ +  A  A
Sbjct: 121 AARIILELRDRILKLSPPGAA-------ATPAGAVQCGIREDATNALLTLGFSRTAAQQA 173

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           V  VL+          +++ AL
Sbjct: 174 VAGVLEANPGG-SVEDVVKSAL 194


>gi|299141888|ref|ZP_07035023.1| holliday junction DNA helicase RuvA [Prevotella oris C735]
 gi|298576739|gb|EFI48610.1| holliday junction DNA helicase RuvA [Prevotella oris C735]
          Length = 205

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 57/209 (27%), Positives = 104/209 (49%), Gaps = 9/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM----RQD 56
           MI  IKG +  L     +++  GV Y +   + T S + +      L+V   +    R D
Sbjct: 1   MIEYIKGELTELTPALAVVEAAGVGYALNISLTTYSGI-QGKKAVKLYVHEALTTGGRDD 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF++  +R+ + LL +V GVGA  A  +LS ++  EL  +I   + K+I  + GI
Sbjct: 60  SFTLYGFVNKQERELYRLLITVSGVGANTARMMLSSMSPAELCNAIANGDEKMIKAVKGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
            +K A R++ +LK K     +    D   V  +++ I    +    A++AL  LG+    
Sbjct: 120 GLKTAQRVIVDLKDKI---MASGIADELHVGSQKSGIAVNNAVKDEAVAALTMLGFSPAP 176

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
               VV++L+K+ ++    Q+++ AL+ +
Sbjct: 177 VAKVVVAILQKQADMP-VEQVVKEALKQL 204


>gi|226226039|ref|YP_002760145.1| Holliday junction DNA helicase RuvA [Gemmatimonas aurantiaca T-27]
 gi|259495644|sp|C1A615|RUVA_GEMAT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226089230|dbj|BAH37675.1| Holliday junction DNA helicase RuvA [Gemmatimonas aurantiaca T-27]
          Length = 197

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 93/206 (45%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYV-LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI +++G I     D V ++   GV Y    P+     L   G   TL     +R+D   
Sbjct: 1   MISQVRGTIMHRELDRVEIMTASGVAYECLIPLSVFESLPSEGQTVTLHTHLVVREDAWH 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    +R  F  L   +GVG  +A+G+LS +T   +V ++  ++   + ++P +  K
Sbjct: 61  LYGFAHAYERAVFQKLLHAKGVGPALALGILSALTPDRVVRALHEKDVLTLMRVPRVGRK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +I+ +L  K  ++        +                 +A+ AL+ LGY Q +A  
Sbjct: 121 KAEQIILDLADKIDAVGPAPATGTAP-----------SPLGDDAVRALIALGYNQTEADR 169

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
           AV +V+ +     D S ++R AL  +
Sbjct: 170 AVRAVV-ESGAPKDVSSLVRGALSRL 194


>gi|229062116|ref|ZP_04199441.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           AH603]
 gi|228717268|gb|EEL68943.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           AH603]
          Length = 197

 Score =  142 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 91/196 (46%), Gaps = 5/196 (2%)

Query: 10  EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69
           E +  +YV+ID  G+ Y I+ P        +      ++   ++R+D + L+GF +  +R
Sbjct: 2   EYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALYGFKTREER 59

Query: 70  QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
             F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K A +++ +LK
Sbjct: 60  LLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLK 119

Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189
           GK   +      D+    +              A+ AL  LGY + + +  V  +LK+  
Sbjct: 120 GKLADVVPDAFVDLFSDTESFDAKKGSSVELDEALEALRALGYAEREVSRVVPELLKE-- 177

Query: 190 NIADDSQIIRLALRAI 205
                 Q I+ AL  +
Sbjct: 178 -SLTTDQYIKKALSLL 192


>gi|15618530|ref|NP_224816.1| Holliday junction DNA helicase RuvA [Chlamydophila pneumoniae
           CWL029]
 gi|15836152|ref|NP_300676.1| Holliday junction DNA helicase motor protein [Chlamydophila
           pneumoniae J138]
 gi|16752420|ref|NP_444679.1| Holliday junction DNA helicase motor protein [Chlamydophila
           pneumoniae AR39]
 gi|33241977|ref|NP_876918.1| Holliday junction DNA helicase motor protein [Chlamydophila
           pneumoniae TW-183]
 gi|6685955|sp|Q9Z7T4|RUVA_CHLPN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|4376917|gb|AAD18759.1| Holliday Junction Helicase [Chlamydophila pneumoniae CWL029]
 gi|7189062|gb|AAF38010.1| Holliday junction DNA helicase RuvA [Chlamydophila pneumoniae AR39]
 gi|8978992|dbj|BAA98827.1| holliday junction helicase [Chlamydophila pneumoniae J138]
 gi|33236487|gb|AAP98575.1| RuvA [Chlamydophila pneumoniae TW-183]
 gi|269302404|gb|ACZ32504.1| holliday junction DNA helicase RuvA [Chlamydophila pneumoniae
           LPCoLN]
          Length = 207

 Score =  142 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 94/205 (45%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIR-TLSCLGKIGDFCTLFVETHMRQDQIR 59
           M   I+G +  ++   ++I+ QG+ Y I    R  + C+  +     +F     R+ +  
Sbjct: 1   MYDYIRGTLTYVHTGAIVIECQGIGYHIAITERWAIECIRALHQDFLVFTHVIFRETEHL 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF S  +R+ F +L S  G+G ++A+ +L+ +    L   +  ++ + +A + GI  K
Sbjct: 61  LYGFHSREERECFRILISFSGIGPKLALAILNALPLKVLCSVVRSEDIRALASVSGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A ++M ELK K   L  +  +  +      +   +  S     I AL  LGY +  A  
Sbjct: 121 TAEKLMVELKQKLPDLLPLDSRVET------SQTHTTSSCLEEGIQALAALGYSKIAAER 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +   +K     +  + I+ +AL+ 
Sbjct: 175 MIAEAIKDLPEGSSLTDILPIALKK 199


>gi|314933806|ref|ZP_07841171.1| holliday junction DNA helicase RuvA [Staphylococcus caprae C87]
 gi|313653956|gb|EFS17713.1| holliday junction DNA helicase RuvA [Staphylococcus caprae C87]
          Length = 200

 Score =  142 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 99/205 (48%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  L+  +V+++  G+ Y I  P  +      +     +F    +R+D   L
Sbjct: 1   MYAYVKGTLTQLFPTHVVVETSGIGYEIQTP-NSYRFQKYLNRDVQIFTSLIVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+S+ ++  F  L  V G+G + A+ +L+  +   +  +I  +N   + Q PGI  K 
Sbjct: 60  YGFISEEEKDMFHSLIKVTGIGPKSALAILAASSPNGVKRAIENENDAYLTQFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK      + ++D   + K   +          A+ AL  LGY + + +  
Sbjct: 120 ARQIVLDLKGKVT----ITEEDSESLLKVDVNNDEQSQVVKEAMLALEALGYSKRELSK- 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  VL K+ +++   + +++ L+ +
Sbjct: 175 VEKVLNKQ-SVSSVDEAVKVGLQTL 198


>gi|281426165|ref|ZP_06257078.1| holliday junction DNA helicase RuvA [Prevotella oris F0302]
 gi|281399741|gb|EFB30572.1| holliday junction DNA helicase RuvA [Prevotella oris F0302]
          Length = 205

 Score =  142 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 57/209 (27%), Positives = 104/209 (49%), Gaps = 9/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM----RQD 56
           MI  IKG +  L     +++  GV Y +   + T S + +      L+V   +    R D
Sbjct: 1   MIEYIKGELTELTPALAVVEAAGVGYALNISLTTYSGI-QGKKAVKLYVHEALTTGGRDD 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF++  +R+ + LL +V GVGA  A  +LS ++  EL  +I   + K+I  + GI
Sbjct: 60  SFTLYGFVNKQERELYRLLITVSGVGANTACMMLSSMSPAELCNAIANGDEKMIKAVKGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
            +K A R++ +LK K     +    D   V  +++ I    +    A++AL  LG+    
Sbjct: 120 GLKTAQRVIVDLKDKI---MASGIADELHVGSQKSGIAVNNAVKDEAVAALTMLGFSPAP 176

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
               VV++L+K+ ++    Q+++ AL+ +
Sbjct: 177 VAKVVVAILQKQADMP-VEQVVKEALKQL 204


>gi|99082212|ref|YP_614366.1| Holliday junction DNA helicase RuvA [Ruegeria sp. TM1040]
 gi|99038492|gb|ABF65104.1| Holliday junction DNA helicase RuvA [Ruegeria sp. TM1040]
          Length = 229

 Score =  142 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 119/227 (52%), Gaps = 22/227 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++    D+V+IDV+GV YI+YC  RTL+ L  +G+   L+ E  +R+D ++L
Sbjct: 1   MIGKLTGRLDYKTPDHVMIDVRGVGYIVYCSDRTLASLPAVGEAVQLYTELLVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S ++++W  LL SVQGVGA+V++ +LS +    +  +I L +   +    G+  K 
Sbjct: 61  FGFTSLVEKEWHRLLTSVQGVGAKVSLAILSALGPEGVSRAIALGDWAAVKAAKGVGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI---------------------CSMPSF 159
           A RI+ +LK KA S+ ++       +   +                            + 
Sbjct: 121 AQRIVLDLKDKAPSVMAMGGTVTEALEGPELDAVVEPAAEAPAKPARKAAPKAPTGAAAA 180

Query: 160 AINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           +  A+SAL NLGYG   A  AV        + A ++++IR ALR ++
Sbjct: 181 SAGALSALGNLGYGPSDAAGAVAEAAANNPD-AGEAELIRAALRLLA 226


>gi|118444147|ref|YP_877905.1| Holliday junction DNA helicase RuvA [Clostridium novyi NT]
 gi|118134603|gb|ABK61647.1| Holliday junction DNA helicase RuvA [Clostridium novyi NT]
          Length = 215

 Score =  142 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 63/204 (30%), Positives = 107/204 (52%), Gaps = 7/204 (3%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
              IKG   GL +DY++++   + Y IY    T++ +  I +   +++E  +R+D I L+
Sbjct: 17  FEYIKGTYMGLNKDYIIVESNNIGYKIYTSGNTMAGMPNINEKVKIYIEQIVREDFIGLY 76

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GFL + +R  F LL ++ GVGA+ A+ +LS    + L  +I+ ++ K++ + PGI  KIA
Sbjct: 77  GFLREDERAMFNLLLTISGVGAKAALSLLSISNVSSLKVAIMTEDYKMLTRAPGIGKKIA 136

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
            RI  ELK K   + +   +D   ++K              AI ALV LG+ Q +A  A+
Sbjct: 137 QRITLELKDKIEKIYAEDIEDGENISKLSMDTGRK---YDEAIEALVALGFTQKEAEKAL 193

Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205
            ++           QII+ +LR +
Sbjct: 194 KNIDINN----TIEQIIKDSLRYL 213


>gi|23335124|ref|ZP_00120362.1| COG0632: Holliday junction resolvasome, DNA-binding subunit
           [Bifidobacterium longum DJO10A]
 gi|23465306|ref|NP_695909.1| holliday junction DNA helicase RuvA [Bifidobacterium longum
           NCC2705]
 gi|189439315|ref|YP_001954396.1| Holliday junction resolvasome DNA-binding subunit [Bifidobacterium
           longum DJO10A]
 gi|227547258|ref|ZP_03977307.1| Holliday junction DNA helicase RuvA [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|239621474|ref|ZP_04664505.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium
           longum subsp. infantis CCUG 52486]
 gi|44888506|sp|Q8G6B8|RUVA_BIFLO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560004|sp|B3DRX9|RUVA_BIFLD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|23325944|gb|AAN24545.1| probable holliday junction DNA helicase RuvA [Bifidobacterium
           longum NCC2705]
 gi|189427750|gb|ACD97898.1| Holliday junction resolvasome DNA-binding subunit [Bifidobacterium
           longum DJO10A]
 gi|227212217|gb|EEI80113.1| Holliday junction DNA helicase RuvA [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|239515935|gb|EEQ55802.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium
           longum subsp. infantis CCUG 52486]
          Length = 208

 Score =  142 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 61/210 (29%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +E +  D  LIDV GV Y +      LS L   G    +F   ++ QD I L
Sbjct: 1   MIGMLTGRVESVETDTALIDVGGVGYEVRMSATDLSRLHA-GQDTRVFTYMNLSQDAITL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GFL    ++ F+ L  V G+G +VA  +LS +T ++L  +I   ++  +A+ PG+  K 
Sbjct: 60  HGFLDRDAKKTFLQLIKVSGIGPKVAQSLLSTLTPSQLAHAIADNDATALAKAPGLGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELKG     S  + Q      +       + +     +  L++LG+ Q  A  A
Sbjct: 120 AQKIILELKG-----SIDLSQIEGASAQAATSKSPVDTGTEQVVEGLISLGWRQQDAQQA 174

Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205
           V     +          D  +++RLAL  +
Sbjct: 175 VAEACAENDIPTPLATDDVPRVLRLALALM 204


>gi|50915147|ref|YP_061119.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes
           MGAS10394]
 gi|139474559|ref|YP_001129275.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes str.
           Manfredo]
 gi|68053071|sp|Q5X9H7|RUVA_STRP6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166231446|sp|A2RGV1|RUVA_STRPG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|50904221|gb|AAT87936.1| Holliday junction DNA helicase [Streptococcus pyogenes MGAS10394]
 gi|134272806|emb|CAM31083.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes str.
           Manfredo]
          Length = 198

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 91/205 (44%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ Y+I       S    +    T+++   +R+D   L
Sbjct: 1   MYDYIKGQLTKITAKYIVVEANGLGYMINV-ANPYSFTDSVNQLVTIYLHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK       V+      + +     +  +    AI AL+ LGY   +    
Sbjct: 120 AQQMVLDLAGKF------VEAPQETGHTKARSNKAGNTQLDEAIEALLALGYKATELKK- 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +    E       Q I+ AL+ +
Sbjct: 173 IRAFF--EGTSETAEQYIKSALKLL 195


>gi|111023845|ref|YP_706817.1| Holliday junction DNA helicase motor protein [Rhodococcus jostii
           RHA1]
 gi|122955049|sp|Q0S1C7|RUVA_RHOSR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|110823375|gb|ABG98659.1| holliday junction DNA helicase [Rhodococcus jostii RHA1]
          Length = 200

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 94/205 (45%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +I+  GV Y +     TL  L + G    L     +R+D + L
Sbjct: 1   MIASVRGEVLEIALDHAVIESAGVGYRVNATPATLGGLQR-GSEARLVTAMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     ++ F LLQ+V GVG R+AM  L+ +    L  ++   N   + ++PGI  + 
Sbjct: 60  YGFPDSESKELFGLLQTVSGVGPRLAMATLAVLEPDALRAALAEGNVTALTRVPGIGKRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K  +++       S             S     + ALV LG+   QA  A
Sbjct: 120 AERMVVELRDKVDAVA-------STSGAVPLGAGGGGSVRDQIVEALVGLGFPAKQAEQA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             SVL +    +  S  +R AL  +
Sbjct: 173 ADSVLAEAPE-STTSTALRSALSLL 196


>gi|325678965|ref|ZP_08158563.1| Holliday junction DNA helicase RuvA [Ruminococcus albus 8]
 gi|324109469|gb|EGC03687.1| Holliday junction DNA helicase RuvA [Ruminococcus albus 8]
          Length = 199

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 49/206 (23%), Positives = 95/206 (46%), Gaps = 9/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     +  +++  GV Y       TL  +        L+    +R++ + L
Sbjct: 1   MIYSVRGKLIHTDGEMAVVECGGVGYACKTTFYTLQKIAGE-SEVMLYTYLAVRENDVDL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  + + F +L +V GVG + A+ +LS  + ++   ++   + K + +  GI  K 
Sbjct: 60  FGFSTTEELRCFKMLITVSGVGPKAALSILSSNSPSQFALTVATGDHKSLTKCKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K    +++  +    V+        M      A++AL+ LGY + +A  A
Sbjct: 120 AQRIVLELKDKIAKENTISVRGGDTVS----AAPVMGGALQEAVTALIVLGYSEGEAAQA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +          A   ++I+ AL A++
Sbjct: 176 LAGA----DPNATVEELIKKALIALA 197


>gi|322374230|ref|ZP_08048762.1| holliday junction DNA helicase RuvA [Streptococcus sp. C150]
 gi|321276834|gb|EFX53907.1| holliday junction DNA helicase RuvA [Streptococcus sp. C150]
          Length = 196

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 88/205 (42%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++I+  G+ YI+       S   ++     +++   +R D   L
Sbjct: 1   MYDYIKGTLVKITAKYIVIEANGLGYIVTV-ANPYSFSDQMNQTIQVYLHQVIRDDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +++ F+ L SV G+G   A+ +++      LV ++   + K + + P I  K 
Sbjct: 60  FGFHTEDEKEVFLKLISVSGIGPTTALAIVAVDDNQGLVAAVDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK   L        S   K   +  +       A+ AL+ LGY   +    
Sbjct: 120 AQQMVLDLAGKFAEL-------PSETTKTTPNQPAGNHQLDEAMEALLALGYKATELKKV 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
                  +       Q I+ AL+ +
Sbjct: 173 ---KAFFDGTNETAEQYIKSALKML 194


>gi|118467715|ref|YP_887263.1| Holliday junction DNA helicase RuvA [Mycobacterium smegmatis str.
           MC2 155]
 gi|166230568|sp|A0QWH5|RUVA_MYCS2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|118169002|gb|ABK69898.1| holliday junction DNA helicase RuvA [Mycobacterium smegmatis str.
           MC2 155]
          Length = 195

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 90/205 (43%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +I+  GV Y +     TL+ L + G    L     +R+D + L
Sbjct: 1   MIASVRGEVIDIALDHAVIEAAGVGYKVMATPSTLATL-RRGTEARLITAMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+    R  F+ L  V GVG ++A+  L+      L +++   +   + ++PGI  + 
Sbjct: 60  YGFVDGDARDLFLTLLGVSGVGPKIALATLAVYDPQALRQALADGDVTALTRVPGIGKRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K              V+          +     + ALV LG+   QA  A
Sbjct: 120 AERMVLELRDKI-----------GPVSAGGGAAVGGHAIRGPVVEALVGLGFAAKQAEEA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              VL  +   A  S  +R AL  +
Sbjct: 169 TDKVLANDPE-ATTSSALRAALSML 192


>gi|158336024|ref|YP_001517198.1| Holliday junction DNA helicase RuvA [Acaryochloris marina
           MBIC11017]
 gi|189045739|sp|B0CAE7|RUVA_ACAM1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|158306265|gb|ABW27882.1| holliday junction DNA helicase RuvA [Acaryochloris marina
           MBIC11017]
          Length = 208

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 55/213 (25%), Positives = 96/213 (45%), Gaps = 13/213 (6%)

Query: 1   MIGKIKGNIEGLYEDY-----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55
           MIG ++G +  L +       + +DV  V Y +Y P R    L    +   +F    +R+
Sbjct: 1   MIGFLQGYVVSLQQTSTHRTLLTLDVNQVGYDLYVPSRIRQHLPPDQEQMRVFTHLQVRE 60

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           DQ+ LFGF    +R  F  L +V G+G ++A+ ++  +   +LV++I+  N+K++ + PG
Sbjct: 61  DQMVLFGFAVVAERDLFRQLIAVSGIGPQLALALIDTLGLQDLVQAIVNSNTKMLVKTPG 120

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           +  K A RI  EL+ K                K       + S   +    L+ LGY   
Sbjct: 121 VGAKTAERIALELRSKLAEWRDQAGL------KTLPSAGPIDSVQEDVEMTLLALGYTSQ 174

Query: 176 QATTAVVSVLKK--EKNIADDSQIIRLALRAIS 206
           +   A+ +V +       +D    IR A+  +S
Sbjct: 175 EVMRALQAVGQNTALAKNSDTEAWIREAIAWLS 207


>gi|313890377|ref|ZP_07824008.1| Holliday junction DNA helicase RuvA [Streptococcus pseudoporcinus
           SPIN 20026]
 gi|313121220|gb|EFR44328.1| Holliday junction DNA helicase RuvA [Streptococcus pseudoporcinus
           SPIN 20026]
          Length = 197

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 94/205 (45%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++V G+ YIIY      S    +    T+++   +R+D   L
Sbjct: 1   MFDYIKGQLTKITAKYIVVEVNGLGYIIYV-ANPYSFTDSVNQNVTVYLHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +D ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTDDEKDVFLKLISVSGIGPMTALAIVAVDDNQGLVTAIDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK +        +     ++     +       AI AL+ LGY   +    
Sbjct: 120 AQQMILDLAGKFV-------DNPEPGQQQSQAKRNSNHQLDEAIEALLALGYKATELKK- 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +  +  +  A   Q I+ AL+ +
Sbjct: 172 IRAFFEGTEETA--EQYIKSALKML 194


>gi|229076052|ref|ZP_04209023.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           Rock4-18]
 gi|229098895|ref|ZP_04229831.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           Rock3-29]
 gi|229105059|ref|ZP_04235711.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           Rock3-28]
 gi|229117921|ref|ZP_04247283.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           Rock1-3]
 gi|228665578|gb|EEL21058.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           Rock1-3]
 gi|228678369|gb|EEL32594.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           Rock3-28]
 gi|228684568|gb|EEL38510.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           Rock3-29]
 gi|228707086|gb|EEL59288.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           Rock4-18]
          Length = 197

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 91/196 (46%), Gaps = 5/196 (2%)

Query: 10  EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69
           E +  +YV+ID  G+ Y I+ P        +      ++   ++R+D + L+GF +  +R
Sbjct: 2   EYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALYGFKTREER 59

Query: 70  QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
             F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K A +++ +LK
Sbjct: 60  LLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLK 119

Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189
           GK   +      D+    +              A+ AL  LGY + + +  V  +LK+  
Sbjct: 120 GKLADVVPDAFVDLFSDVESFDEKKGSSVELDEALEALRALGYAEREVSRVVPELLKE-- 177

Query: 190 NIADDSQIIRLALRAI 205
                 Q I+ AL  +
Sbjct: 178 -SLTTDQYIKKALSLL 192


>gi|281355312|ref|ZP_06241806.1| Holliday junction DNA helicase RuvA [Victivallis vadensis ATCC
           BAA-548]
 gi|281318192|gb|EFB02212.1| Holliday junction DNA helicase RuvA [Victivallis vadensis ATCC
           BAA-548]
          Length = 203

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 52/207 (25%), Positives = 98/207 (47%), Gaps = 7/207 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G +        +IDV GV Y    P+ T   L + G+   L + T +R+D I L
Sbjct: 1   MIARLTGILAESSFSGCIIDVGGVGYEALIPLSTFDKLPQPGNKVELHIFTQVREDAITL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++ F  L +V G+G ++A+ VLS +  +    +I   + K +++I G+  + 
Sbjct: 61  FGFATPEEKKLFQQLINVSGIGGKIALSVLSSMPVSGFCSAIASGDIKSLSRISGVGKRT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K  S++         V    A      + A  A  AL  LG+ +D     
Sbjct: 121 AERMVVELRDKLGSVAG------GSVFVPDAEQGGELTAAAEAALALEQLGFKRDAIDKV 174

Query: 181 VVSVLKKEKNIA-DDSQIIRLALRAIS 206
           + ++L +         +++R  +  ++
Sbjct: 175 LKTLLAELPKSEHTTDKLLRQGIIKLN 201


>gi|16803573|ref|NP_465058.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes EGD-e]
 gi|224499806|ref|ZP_03668155.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes Finland
           1988]
 gi|224501527|ref|ZP_03669834.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes FSL
           R2-561]
 gi|254828233|ref|ZP_05232920.1| ruvA [Listeria monocytogenes FSL N3-165]
 gi|254829708|ref|ZP_05234363.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes 10403S]
 gi|284801923|ref|YP_003413788.1| hypothetical protein LM5578_1678 [Listeria monocytogenes 08-5578]
 gi|284995065|ref|YP_003416833.1| hypothetical protein LM5923_1630 [Listeria monocytogenes 08-5923]
 gi|20455246|sp|Q8Y6Z7|RUVA_LISMO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|16410962|emb|CAC99611.1| ruvA [Listeria monocytogenes EGD-e]
 gi|258600621|gb|EEW13946.1| ruvA [Listeria monocytogenes FSL N3-165]
 gi|284057485|gb|ADB68426.1| hypothetical protein LM5578_1678 [Listeria monocytogenes 08-5578]
 gi|284060532|gb|ADB71471.1| hypothetical protein LM5923_1630 [Listeria monocytogenes 08-5923]
          Length = 201

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +  +Y++++   + Y I       S     G    +F+  H+R+D I L
Sbjct: 1   MYDYIKGTVTTITPEYIVVEAGQIGYQI-ITGNPFSFQRLEGTEAQVFLYQHVREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L SV G+G + A+ +++      L+ +I  ++   + + P +  K 
Sbjct: 60  FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLISAIESEDDVYLTKFPSVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   L+ VV  ++  V  E   +  +      A+ AL  LGY   +    
Sbjct: 120 ARQIILDLKGK---LADVVASEIVYVAPENDMVAGLSPQLEEAVLALEALGYSTRELKKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  + K+          I+LAL+ +
Sbjct: 177 IPKLAKEA--DLTSDAYIKLALQLM 199


>gi|315282450|ref|ZP_07870861.1| holliday junction DNA helicase RuvA [Listeria marthii FSL S4-120]
 gi|313613902|gb|EFR87635.1| holliday junction DNA helicase RuvA [Listeria marthii FSL S4-120]
          Length = 201

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 93/205 (45%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +  +Y++++   + Y I       S     G    +F+  H+R+D I L
Sbjct: 1   MYDYIKGTVTTITPEYIVVEAGQIGYQI-ITGNPFSFQRLEGTDAQVFLYQHVREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L SV G+G + A+ +++      L+ +I  ++   + + P +  K 
Sbjct: 60  FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLITAIESEDDVYLTKFPSVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   L+ VV  ++         +  +      A+ AL  LGY   +    
Sbjct: 120 ARQIILDLKGK---LADVVASEIVFTAPGNDIVAGLSPQLEEAVLALEALGYSTRELKKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  + K+          I+LAL+ +
Sbjct: 177 IPKLAKE--TDLTSDAYIKLALQLM 199


>gi|148284809|ref|YP_001248899.1| Holliday junction DNA helicase motor protein [Orientia
           tsutsugamushi str. Boryong]
 gi|166230578|sp|A5CEJ4|RUVA_ORITB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|146740248|emb|CAM80579.1| Holliday junction DNA helicase [Orientia tsutsugamushi str.
           Boryong]
          Length = 205

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 64/205 (31%), Positives = 119/205 (58%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI K+KG ++ + + Y++ID+ GV Y +Y   +TL  L  + G   +LF+ETH+R+D+I 
Sbjct: 1   MIAKLKGILDSITDSYLIIDINGVGYQVYSSGKTLMKLIKEEGSIVSLFIETHVREDRIH 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGFL + ++  F +LQSV G+G ++A+ +LS +T  +L  +I  QN   +  I G+  K
Sbjct: 61  LFGFLDNTEKVAFNMLQSVSGIGTKMALHILSNLTPHQLQIAISSQNRHQLKAISGVGPK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           +  R+M EL+ K  +++++       +    ++     +   +AI+AL+ LG  + +AT 
Sbjct: 121 LIDRLMIELRDKVANINTIANNTSLAILSTDSNT--HDNILSDAITALIALGISRAEATQ 178

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +  +     +I   ++++R AL+ 
Sbjct: 179 ILSDIYALFPSI-SVNELVRTALQR 202


>gi|229019645|ref|ZP_04176455.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           AH1273]
 gi|229025883|ref|ZP_04182279.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           AH1272]
 gi|228735435|gb|EEL86034.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           AH1272]
 gi|228741648|gb|EEL91838.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus
           AH1273]
          Length = 197

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 91/196 (46%), Gaps = 5/196 (2%)

Query: 10  EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69
           E +  +YV+ID  G+ Y I+ P        +      ++   ++R+D + L+GF +  +R
Sbjct: 2   EYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALYGFKTREER 59

Query: 70  QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
             F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+  K A +++ +LK
Sbjct: 60  LLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLK 119

Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189
           GK   +      D+    +              A+ AL  LGY + + +  V  +LK+  
Sbjct: 120 GKLADVVPDAFVDLFSDVESFDQKKGSSVELDEALEALRALGYAEREVSRVVPELLKE-- 177

Query: 190 NIADDSQIIRLALRAI 205
                 Q I+ AL  +
Sbjct: 178 -SLTTDQYIKKALSLL 192


>gi|116670849|ref|YP_831782.1| Holliday junction DNA helicase RuvA [Arthrobacter sp. FB24]
 gi|166230514|sp|A0JXB2|RUVA_ARTS2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|116610958|gb|ABK03682.1| Holliday junction DNA helicase subunit RuvA [Arthrobacter sp. FB24]
          Length = 214

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 55/208 (26%), Positives = 98/208 (47%), Gaps = 12/208 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +     +ID+ G    +    +TLS L + G+   LF    +R+D + L
Sbjct: 1   MISFLRGTVAHVGLSSAVIDLNGAGMSVNATPQTLSGL-RTGEEGKLFTSLIVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF SD +R+ F +L SV GVG R+A+ VL+      +  +    + K   ++PGI  K+
Sbjct: 60  FGFSSDDEREVFDVLLSVSGVGPRLALAVLAVHDPEAIRVAAHTGDGKAFTKVPGIGPKV 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL GK +                     +   +    ++A+ +LG+ +  AT++
Sbjct: 120 AGRIVLELAGKLV--------PHGTGAAAAPAAAASAPWKPQVVAAMTSLGWSEKDATSS 171

Query: 181 VVSVLKKEKNIA---DDSQIIRLALRAI 205
           +   L     +      ++I+R  LR +
Sbjct: 172 IDKALSDSPELEAGGQVAEILRATLRWL 199


>gi|113952944|ref|YP_730832.1| Holliday junction DNA helicase RuvA [Synechococcus sp. CC9311]
 gi|123031696|sp|Q0I9P0|RUVA_SYNS3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|113880295|gb|ABI45253.1| Holliday junction DNA helicase RuvA [Synechococcus sp. CC9311]
          Length = 219

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 56/216 (25%), Positives = 96/216 (44%), Gaps = 11/216 (5%)

Query: 1   MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG ++G     +       ++I   GV Y +    R L  L   G  CT+++    R D
Sbjct: 1   MIGWLRGERIEHWSQGGRQGLVIACAGVGYEVQLASRYLQPLSA-GATCTVWIHQVQRDD 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              LFGF    +R  F +L SV G+G +V + +L   +A EL+E+II  + + + Q  G+
Sbjct: 60  GSSLFGFPDRRERDLFRVLISVNGIGPQVGLALLESCSAAELIEAIIDGDLRRLTQAQGV 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVN----KEQAHICSMPSFAINAISALVNLGY 172
             + A R+  EL+ +  + S+    D S ++     +   +   P    +    L  LGY
Sbjct: 120 GKRTAERLAVELRDRLGAWSAEKNSDHSDLSLVDRSDLKSLPIEPDPLQDLQLTLSTLGY 179

Query: 173 GQDQATTAVVSVLKKE--KNIADDSQIIRLALRAIS 206
              +   A+ +V   E      D    +R +LR ++
Sbjct: 180 EDLEIRRAMRAVATGEEVPAANDGDGWLRASLRWLN 215


>gi|317057206|ref|YP_004105673.1| Holliday junction DNA helicase RuvA [Ruminococcus albus 7]
 gi|315449475|gb|ADU23039.1| Holliday junction DNA helicase RuvA [Ruminococcus albus 7]
          Length = 199

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 95/206 (46%), Gaps = 9/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     +  +++  GV Y       TL  +       TL+    +R++ + L
Sbjct: 1   MIYSVRGKLIHTESELAVVECSGVGYACKTTFYTLQKIAGE-SEVTLYTYLAVRENDVDL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  + + F +L +V GVG + A+ +LS  T ++   ++   + K + +  GI  K 
Sbjct: 60  FGFSSQEELRCFKMLITVSGVGPKAALSILSSNTPSQFALTVATGDFKSLTKSKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K    +++  +    +    A           AI+ALV LGY + +A  A
Sbjct: 120 AQRIVLELKDKIAKENTISVRGGETI----ASAVPRGGALDEAITALVVLGYSEGEAAQA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +       +  A   ++I+ AL  ++
Sbjct: 176 LAGA----EPTATVEELIKTALVRLA 197


>gi|184154991|ref|YP_001843331.1| holliday junction DNA helicase RuvA [Lactobacillus fermentum IFO
           3956]
 gi|227514529|ref|ZP_03944578.1| crossover junction endoribonuclease subunit A [Lactobacillus
           fermentum ATCC 14931]
 gi|260663386|ref|ZP_05864277.1| Holliday junction DNA helicase RuvA [Lactobacillus fermentum
           28-3-CHN]
 gi|229560093|sp|B2GB19|RUVA_LACF3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|183226335|dbj|BAG26851.1| holliday junction DNA helicase RuvA [Lactobacillus fermentum IFO
           3956]
 gi|227087086|gb|EEI22398.1| crossover junction endoribonuclease subunit A [Lactobacillus
           fermentum ATCC 14931]
 gi|260552238|gb|EEX25290.1| Holliday junction DNA helicase RuvA [Lactobacillus fermentum
           28-3-CHN]
          Length = 200

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 50/206 (24%), Positives = 92/206 (44%), Gaps = 7/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G I  +  D++++DV GV Y +       +          +F+   +++D I L
Sbjct: 1   MFEYLTGLITMVSPDFIVVDVNGVGYRVAV-ANPYAYQEDDQQAVQVFIYQAVKEDAITL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++ F  L  V G+G + A+ +L+      L+++I   + K +++ PGI  K 
Sbjct: 60  FGFATQAEKRLFTQLIGVSGIGPKSALAILATPDHQGLIDAIQNGDDKYLSKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ ELK K +++   VQ D +             + A        +LGY   Q    
Sbjct: 120 ASRIIIELKDKVVAVQDEVQLDFTAPGPLGPSAALQDALAAL-----ESLGYTTKQVER- 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V   L+  +     +  +   L+ +S
Sbjct: 174 VQKQLEGLQGELSTNDYLSQGLKLLS 199


>gi|239939964|ref|ZP_04691901.1| Holliday junction DNA helicase RuvA [Streptomyces roseosporus NRRL
           15998]
 gi|239986448|ref|ZP_04707112.1| Holliday junction DNA helicase RuvA [Streptomyces roseosporus NRRL
           11379]
 gi|291443395|ref|ZP_06582785.1| holliday junction ATP-dependent DNA helicase ruvA [Streptomyces
           roseosporus NRRL 15998]
 gi|291346342|gb|EFE73246.1| holliday junction ATP-dependent DNA helicase ruvA [Streptomyces
           roseosporus NRRL 15998]
          Length = 208

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 53/212 (25%), Positives = 95/212 (44%), Gaps = 13/212 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L     +I+V G+   + C   TL+ L ++G    L     +R+D + L
Sbjct: 1   MIAFVSGPVAALAPTTAVIEVGGIGMAVQCTPHTLADL-RVGKEARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+  +   L  ++   + K +  + GI  K 
Sbjct: 60  YGFRDDDERQVFELLQTASGVGPRLAQAMLATHSPDALRLAVSTGDEKALTAVSGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK +        +   + + ++         +     +AL+ LGY   +A  A
Sbjct: 120 AQKLLLELKDRLG------EPVGAHIGQQGIGTPVTAGWRDQLQAALIGLGYATREADEA 173

Query: 181 VV------SVLKKEKNIADDSQIIRLALRAIS 206
           V            E       Q++R AL+ ++
Sbjct: 174 VNAVAPQAEAAAAEGTAPPVPQLLRAALQTLN 205


>gi|313886562|ref|ZP_07820276.1| Holliday junction DNA helicase RuvA [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312923972|gb|EFR34767.1| Holliday junction DNA helicase RuvA [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 202

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 53/208 (25%), Positives = 87/208 (41%), Gaps = 9/208 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFC---TLFVETHMRQDQ 57
           MI  ++G I+ L      +D  GV Y +   + T   L  +           E   + + 
Sbjct: 1   MIAYLRGTIDTLTPTNAYVDCSGVGYDVNISLSTYDTLHGLEREAPVRLWITEVMRQGEV 60

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
             L+GF +  ++  F  L +V GVG   A  +LS +   EL E I   + K +  + GI 
Sbjct: 61  CDLYGFYTREEQALFTKLITVSGVGPATARVILSSLAPLELAEVIESGDDKRLKMVKGIG 120

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           +K A RI+ +LKGK     +      + +    A        A  AISAL  LG+ +   
Sbjct: 121 LKTAQRIIVDLKGKLPETLTDRDDVTAGIGSRAAR-----EVAEEAISALKMLGFAEVNV 175

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
              V  ++  + +     Q+I+ AL  +
Sbjct: 176 RKVVKQIMSVKPDTP-VEQVIKQALAKL 202


>gi|296454195|ref|YP_003661338.1| Holliday junction DNA helicase RuvA [Bifidobacterium longum subsp.
           longum JDM301]
 gi|312132689|ref|YP_004000028.1| ruva [Bifidobacterium longum subsp. longum BBMN68]
 gi|317483238|ref|ZP_07942233.1| Holliday junction DNA helicase RuvA [Bifidobacterium sp.
           12_1_47BFAA]
 gi|322689208|ref|YP_004208942.1| holliday junction DNA helicase RuvA [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322691274|ref|YP_004220844.1| holliday junction DNA helicase RuvA [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|291516874|emb|CBK70490.1| Holliday junction DNA helicase subunit RuvA [Bifidobacterium longum
           subsp. longum F8]
 gi|296183626|gb|ADH00508.1| Holliday junction DNA helicase RuvA [Bifidobacterium longum subsp.
           longum JDM301]
 gi|311773647|gb|ADQ03135.1| RuvA [Bifidobacterium longum subsp. longum BBMN68]
 gi|316915307|gb|EFV36734.1| Holliday junction DNA helicase RuvA [Bifidobacterium sp.
           12_1_47BFAA]
 gi|320456130|dbj|BAJ66752.1| holliday junction DNA helicase RuvA [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320460544|dbj|BAJ71164.1| holliday junction DNA helicase RuvA [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 208

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 61/210 (29%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +E +  D  LIDV GV Y +      LS L   G    +F   ++ QD I L
Sbjct: 1   MIGMLTGRVESVETDTALIDVGGVGYEVRMSATDLSRLHA-GQDTRVFTYMNLSQDAITL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GFL    ++ F+ L  V G+G +VA  +LS +T ++L  +I   ++  +A+ PG+  K 
Sbjct: 60  HGFLDRDAKKTFLQLIKVSGIGPKVAQSLLSTLTPSQLAHAIADNDATALAKAPGLGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELKG     S  + Q      +       + +     +  L++LG+ Q  A  A
Sbjct: 120 AQKIILELKG-----SIDLSQIEGASAQAAISKSPVDTGTEQVVEGLISLGWRQQDAQQA 174

Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205
           V     +          D  +++RLAL  +
Sbjct: 175 VAEACAENDIPTPLATDDVPRVLRLALALM 204


>gi|220932069|ref|YP_002508977.1| Holliday junction DNA helicase RuvA [Halothermothrix orenii H 168]
 gi|254766964|sp|B8CXG3|RUVA_HALOH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|219993379|gb|ACL69982.1| Holliday junction DNA helicase RuvA [Halothermothrix orenii H 168]
          Length = 194

 Score =  141 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 16/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG +KGN+    E+ V+++  GV Y +  P      L  +G+   LFV T++R+D + L
Sbjct: 1   MIGYLKGNVIWKAENKVILETGGVGYRVLVPSTV--RLKPVGEKLELFVYTYVREDSLDL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F  L SV G+G R A+ +LS ++  + +E+I+ +   ++ Q+ GI  K 
Sbjct: 59  YGFKTMEERELFETLLSVSGIGPRAAINILSSLSYKKFIEAILTEKVSILKQVSGIGPKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK   +S   ++ +              +       AL +LGY + +   A
Sbjct: 119 AKRLILELKGKLKDMSGDFEEPL------------PDNRNTELSDALASLGYSELEIEEA 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +     KN     + I+ AL  +
Sbjct: 167 LSNA--DIKNNGSLEENIKKALGYL 189


>gi|56808549|ref|ZP_00366283.1| COG0632: Holliday junction resolvasome, DNA-binding subunit
           [Streptococcus pyogenes M49 591]
          Length = 198

 Score =  141 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 91/205 (44%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ Y+I       S    +    T+++   +R+D   L
Sbjct: 1   MYDYIKGQLTKITAKYIVVEANGLGYMINV-ANPYSFTDSVNQLVTIYLHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK       V+      + +     +  +    AI AL+ LGY   +    
Sbjct: 120 AQQMVLDLAGKF------VEAPQETGHTKARSNKAGNTQLDEAIEALLALGYTATELKK- 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +    E       Q I+ AL+ +
Sbjct: 173 IRAFF--EGTSETAEQYIKSALKLL 195


>gi|15924632|ref|NP_372166.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15927222|ref|NP_374755.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus N315]
 gi|21283321|ref|NP_646409.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49486475|ref|YP_043696.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|148268122|ref|YP_001247065.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150394190|ref|YP_001316865.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156979960|ref|YP_001442219.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|253317207|ref|ZP_04840420.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|255006427|ref|ZP_05145028.2| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|258453755|ref|ZP_05701730.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A5937]
 gi|269203267|ref|YP_003282536.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282893146|ref|ZP_06301380.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8117]
 gi|282928277|ref|ZP_06335882.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A10102]
 gi|296275927|ref|ZP_06858434.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297207637|ref|ZP_06924072.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300911720|ref|ZP_07129163.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|54039574|sp|P66749|RUVA_STAAN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|54039575|sp|P66750|RUVA_STAAW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|54042203|sp|P66748|RUVA_STAAM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|56749510|sp|Q6G8S7|RUVA_STAAS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166200268|sp|A7X358|RUVA_STAA1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189045773|sp|A6U2B0|RUVA_STAA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189045774|sp|A5ITG6|RUVA_STAA9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|13701440|dbj|BAB42734.1| holliday junction DNA helicase [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247414|dbj|BAB57804.1| holliday junction DNA helicase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|21204761|dbj|BAB95457.1| holliday junction DNA helicase [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49244918|emb|CAG43379.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|147741191|gb|ABQ49489.1| Holliday junction DNA helicase subunit RuvA [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149946642|gb|ABR52578.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156722095|dbj|BAF78512.1| holliday junction DNA helicase [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|257864075|gb|EEV86828.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A5937]
 gi|262075557|gb|ACY11530.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282590084|gb|EFB95166.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A10102]
 gi|282764464|gb|EFC04590.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8117]
 gi|285817324|gb|ADC37811.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus
           04-02981]
 gi|296887654|gb|EFH26552.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300885966|gb|EFK81168.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|312830028|emb|CBX34870.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315129927|gb|EFT85917.1| holliday junction DNA helicase [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|329727620|gb|EGG64076.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 200

 Score =  141 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 52/204 (25%), Positives = 93/204 (45%), Gaps = 7/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  LY  +V+++  GV Y I  P  +      +     +     +R+D   L
Sbjct: 1   MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKHLDHEVLIRTSLIVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ ++  F+ L  V G+G + A+ +L+  T  E+  +I  +N   + + PGI  K 
Sbjct: 60  YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK      + ++D   + +  A       F   A+ AL  LGY + +    
Sbjct: 120 ARQIVLDLKGKVK----ITEEDSDSLLQVDATSTVQDQFVQEAMLALEALGYSKRELAK- 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V   L K K      + ++  L+ 
Sbjct: 175 VEKTLNKNK-YDSVDEAVKAGLQL 197


>gi|282880373|ref|ZP_06289084.1| Holliday junction DNA helicase RuvA [Prevotella timonensis CRIS
           5C-B1]
 gi|281305729|gb|EFA97778.1| Holliday junction DNA helicase RuvA [Prevotella timonensis CRIS
           5C-B1]
          Length = 204

 Score =  141 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 8/208 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM---RQDQ 57
           MI  I+G +  L     +++  G+ Y +   + T S +    +      E+ +   R D 
Sbjct: 1   MIEYIRGELTDLTPAQAVLEAAGIGYSLNISLNTYSAIQGKKEVKLYVHESLVTGGRDDN 60

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
              +GF S  +R  + +L +V GVGA  A  +LS I+  EL   I   + +++  + GI 
Sbjct: 61  FTFYGFYSKQERDLYRMLITVSGVGANTARMILSAISPAELCNVIANGDERMLKSVKGIG 120

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           +K A RI+ +LK K +S     +  +S    +Q            A+SAL  LG+    +
Sbjct: 121 LKTAQRIIVDLKDKIVSSGIATELHVS----DQPQNMVHSGIRDEAVSALTMLGFSPAPS 176

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
              V S+LK+  +     Q+++LAL  I
Sbjct: 177 AKVVESILKES-DSMPVEQVVKLALSRI 203


>gi|228935741|ref|ZP_04098554.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228823979|gb|EEM69798.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
          Length = 197

 Score =  141 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 46/196 (23%), Positives = 91/196 (46%), Gaps = 5/196 (2%)

Query: 10  EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69
           E +  +YV+ID  G+ Y I+ P        +      ++   ++R+D + L+GF +  +R
Sbjct: 2   EYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALYGFKTREER 59

Query: 70  QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
             F  L  V G+G + A+ +L+     ++V++I  ++ K + + P +  K A +++ +LK
Sbjct: 60  LLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPSVGKKTARQMILDLK 119

Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189
           GK   +      D+    +         +    A+ AL  LGY + + +  V  +LK+  
Sbjct: 120 GKLADVVPDAFVDLFSDEERFDEKKGSSAELDEALEALRALGYAEREVSRVVPELLKE-- 177

Query: 190 NIADDSQIIRLALRAI 205
                 Q I+ AL  +
Sbjct: 178 -SLTTDQYIKKALSLL 192


>gi|297559814|ref|YP_003678788.1| Holliday junction DNA helicase RuvA [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296844262|gb|ADH66282.1| Holliday junction DNA helicase RuvA [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 206

 Score =  141 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 101/206 (49%), Gaps = 2/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +        +IDV GV   + C    LS L  +G+  T+     +R++ + L
Sbjct: 1   MIAFLTGRVAARGAGTAVIDVGGVGMTVQCTPSALSRL-HVGETGTVATSLVVREESLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF  D ++  F  LQ+  GVG R+A+ +LS  + + L  ++  +++  + ++PGI  K 
Sbjct: 60  FGFADDDEKHLFEQLQTASGVGPRLALAMLSVHSPSSLRHAVSTEDTTALTRVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL+GK  +   +    +              ++    +S LVNLG+    A  A
Sbjct: 120 AQRIVLELRGKLDA-PVLTDGTLPGSEAAGTGSEPNGAWRGQVVSGLVNLGWSAKDAEAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
             +V  + ++  D + ++R ALR +S
Sbjct: 179 ASAVAAEAEHTDDVAVLLRSALRRLS 204


>gi|260898721|ref|ZP_05907217.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus
           Peru-466]
 gi|308089527|gb|EFO39222.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus
           Peru-466]
          Length = 147

 Score =  141 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 73/137 (53%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       VLI+V G+ Y +  P+     L  IG+   ++    +R+D   L
Sbjct: 1   MIGRLRGILLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  +    GVG ++ +G+LS +TA++ V  +  ++   + ++PG+  K 
Sbjct: 61  YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDVSTLVKLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSS 137
           A R++ E+K +     +
Sbjct: 121 AERLVVEMKDRLKGWGA 137


>gi|70726280|ref|YP_253194.1| Holliday junction DNA helicase RuvA [Staphylococcus haemolyticus
           JCSC1435]
 gi|90135915|sp|Q4L6Y7|RUVA_STAHJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|68447004|dbj|BAE04588.1| holliday junction DNA helicase [Staphylococcus haemolyticus
           JCSC1435]
          Length = 201

 Score =  141 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 49/206 (23%), Positives = 96/206 (46%), Gaps = 8/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLID-VQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           M   I+G +  L+  +V+++ + GV Y I  P  +      +     ++    +R+D   
Sbjct: 1   MYAYIRGKLTQLFPTHVVVESINGVGYEIQTP-NSYRFQKYLEKELVIYTSLIVREDAQL 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF+++ ++  F+ L  V G+G + A+ +L+  T  E+  +I  +N   + + PGI  K
Sbjct: 60  LYGFINEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKMAIENENDAYLTKFPGIGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +I+ +LKGK        +  +S          +  +    A+ AL  LGY + + + 
Sbjct: 120 TARQIVLDLKGKVQITRETTETLLS----MNEENSNSENLVKEALLALEALGYSKREISK 175

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            V  VL K        + ++L L+ +
Sbjct: 176 -VEKVLNKS-TFDSVDEAVKLGLKTL 199


>gi|228471297|ref|ZP_04056103.1| holliday junction DNA helicase RuvA [Porphyromonas uenonis 60-3]
 gi|228306939|gb|EEK16037.1| holliday junction DNA helicase RuvA [Porphyromonas uenonis 60-3]
          Length = 202

 Score =  141 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 91/208 (43%), Gaps = 9/208 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG--KIGDFCTLFVETHMRQDQ- 57
           MI  ++G I+ L      +D  GV Y +   + T   L   +      L++   MRQ + 
Sbjct: 1   MIAYLRGTIDTLTPTNAYVDCSGVGYDVNISLSTYDTLHGLERDAPVRLWITEVMRQGEV 60

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
             L+GF +  ++  F  L +V GVG   A  +LS +   EL E I   + K +  + GI 
Sbjct: 61  CDLYGFYTREEQALFAKLITVSGVGPATARVILSSLAPLELAEVIESGDDKRLKMVKGIG 120

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           +K A RI+ +LKGK     +      + +    A        A  AISAL  LG+ +   
Sbjct: 121 LKTAQRIIVDLKGKLPETLTDRDDVTAGIGSRAAR-----EVAEEAISALKMLGFAEANV 175

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
              V  ++  + +     Q+I+ AL  +
Sbjct: 176 RKVVKQIMTVKPDTP-VEQVIKQALAQL 202


>gi|209560229|ref|YP_002286701.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes NZ131]
 gi|226698743|sp|B5XJ07|RUVA_STRPZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|209541430|gb|ACI62006.1| Holliday junction DNA helicase ruvA [Streptococcus pyogenes NZ131]
          Length = 198

 Score =  141 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 91/205 (44%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ Y+I       S    +    T+++   +R+D   L
Sbjct: 1   MYDYIKGQLTKITAKYIVVEANGLGYMINV-ANPYSFTHSVNQLVTIYLHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK       V+      + +     +  +    AI AL+ LGY   +    
Sbjct: 120 AQQMVLDLAGKF------VEAPQETGHTKARSNKAGNTQLDEAIEALLALGYTATELKK- 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +    E       Q I+ AL+ +
Sbjct: 173 IRAFF--EGTSETAEQYIKSALKLL 195


>gi|332300396|ref|YP_004442317.1| Holliday junction ATP-dependent DNA helicase ruvA [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332177459|gb|AEE13149.1| Holliday junction ATP-dependent DNA helicase ruvA [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 202

 Score =  141 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 91/208 (43%), Gaps = 9/208 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG--KIGDFCTLFVETHMRQDQ- 57
           MI  ++G I+ L      +D  GV Y +   + T   L   +      L++   MRQ + 
Sbjct: 1   MIAYLRGTIDTLTPTNAYVDCSGVGYDVNISLSTYDTLHGLERDAPVRLWITEVMRQGEV 60

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
             L+GF +  ++  F  L +V GVG   A  +LS +   EL E I   + K +  + GI 
Sbjct: 61  CDLYGFYTREEQALFTKLITVSGVGPATARVILSSLAPLELAEVIESGDDKRLKMVKGIG 120

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           +K A RI+ +LKGK     +      + +    A        A  AISAL  LG+ +   
Sbjct: 121 LKTAQRIIVDLKGKLPETLTDRDDVTAGIGSRAAR-----EVAEEAISALKMLGFAEVNV 175

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
              V  ++  + +     Q+I+ AL  +
Sbjct: 176 RKVVKQIMSVKPDTP-VEQVIKQALAKL 202


>gi|257793715|ref|ZP_05642694.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9781]
 gi|258410986|ref|ZP_05681266.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9763]
 gi|258420213|ref|ZP_05683168.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9719]
 gi|258438215|ref|ZP_05689499.1| Holliday junction DNA helicase subunit RuvA [Staphylococcus aureus
           A9299]
 gi|258443678|ref|ZP_05692017.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8115]
 gi|258446885|ref|ZP_05695039.1| Holliday junction DNA helicase [Staphylococcus aureus A6300]
 gi|258448799|ref|ZP_05696911.1| Holliday junction DNA helicase subunit RuvA [Staphylococcus aureus
           A6224]
 gi|295406763|ref|ZP_06816568.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8819]
 gi|297245654|ref|ZP_06929519.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8796]
 gi|257787687|gb|EEV26027.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9781]
 gi|257840136|gb|EEV64600.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9763]
 gi|257843924|gb|EEV68318.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9719]
 gi|257848259|gb|EEV72250.1| Holliday junction DNA helicase subunit RuvA [Staphylococcus aureus
           A9299]
 gi|257851084|gb|EEV75027.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8115]
 gi|257854460|gb|EEV77409.1| Holliday junction DNA helicase [Staphylococcus aureus A6300]
 gi|257858077|gb|EEV80966.1| Holliday junction DNA helicase subunit RuvA [Staphylococcus aureus
           A6224]
 gi|294968510|gb|EFG44534.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8819]
 gi|297177305|gb|EFH36557.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8796]
          Length = 203

 Score =  141 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 52/204 (25%), Positives = 93/204 (45%), Gaps = 7/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  LY  +V+++  GV Y I  P  +      +     +     +R+D   L
Sbjct: 4   MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKHLDHEVLIRTSLIVREDAQLL 62

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ ++  F+ L  V G+G + A+ +L+  T  E+  +I  +N   + + PGI  K 
Sbjct: 63  YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 122

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK      + ++D   + +  A       F   A+ AL  LGY + +    
Sbjct: 123 ARQIVLDLKGKVK----ITEEDSDSLLQVDATSTVQDQFVQEAMLALEALGYSKRELAK- 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V   L K K      + ++  L+ 
Sbjct: 178 VEKTLNKNK-YDSVDEAVKAGLQL 200


>gi|226366281|ref|YP_002784064.1| Holliday junction DNA helicase RuvA [Rhodococcus opacus B4]
 gi|254767383|sp|C1B4D0|RUVA_RHOOB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226244771|dbj|BAH55119.1| Holliday junction DNA helicase RuvA [Rhodococcus opacus B4]
          Length = 200

 Score =  141 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 92/205 (44%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +I+  GV Y +     TL  L + G    L     +R+D + L
Sbjct: 1   MIASVRGEVLEIALDHAVIESAGVGYRVNATPATLGGLQR-GTEARLVTAMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     ++ F LLQ+V GVG R+AM  L+ +    L  ++   N   + ++PGI  + 
Sbjct: 60  YGFPDSESKELFGLLQTVSGVGPRLAMATLAVLEPEALRSALAEGNVTALTRVPGIGKRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K  ++        S             S     + ALV LG+   QA  A
Sbjct: 120 AERMVVELRDKVDAVG-------STSGAVPLGAGGGGSVRDQIVEALVGLGFPAKQAEQA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             SVL +       S + R AL  +
Sbjct: 173 TDSVLAEAPESTTSSAL-RSALSLL 196


>gi|169629967|ref|YP_001703616.1| Holliday junction DNA helicase RuvA [Mycobacterium abscessus ATCC
           19977]
 gi|229560105|sp|B1MCJ1|RUVA_MYCA9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|169241934|emb|CAM62962.1| Holliday junction DNA helicase RuvA [Mycobacterium abscessus]
          Length = 202

 Score =  141 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 55/208 (26%), Positives = 94/208 (45%), Gaps = 13/208 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +  D+V+I+  GV Y +     TLS L + G    L     +R+D + L
Sbjct: 1   MIASVNGEVIDIALDHVVIEAAGVGYRVNATPATLSTL-RRGTQIRLITAMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F  L  V GVG ++AM  L+   A  L +++   +   + ++PGI  + 
Sbjct: 60  YGFTDTDARDLFTTLLGVSGVGPKIAMATLAVYDAPTLRQALADGDVAALTRVPGIGKRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K  +         +     +    +        + AL+ LG+   QA  A
Sbjct: 120 AERLVLELREKVAA---------APGGTTELGRGTASLVRSQVVEALIGLGFAAKQAEQA 170

Query: 181 VVSVLKKEKN---IADDSQIIRLALRAI 205
             +VL ++      AD S ++R AL  +
Sbjct: 171 TDTVLAQDNPGDTGADVSGVLRSALALL 198


>gi|299822806|ref|ZP_07054692.1| crossover junction ATP-dependent DNA helicase RuvA [Listeria grayi
           DSM 20601]
 gi|299816335|gb|EFI83573.1| crossover junction ATP-dependent DNA helicase RuvA [Listeria grayi
           DSM 20601]
          Length = 200

 Score =  141 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 94/205 (45%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  +  ++++++   V Y +       +     G    +FV  H+R+D + L
Sbjct: 1   MYDYINGTVTDITPEFIVVEAGQVGYQL-ITGNPFAFQSMSGQTAKVFVYQHVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L SV G+G + A+ +++   A  L+ +I  ++   + + P +  K 
Sbjct: 60  FGFKTKEERFLFKKLLSVSGIGPKSALAIIATGDANALIGAIEAEDDVYLTKFPSVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   + +   +      KE+     +      AI AL  LGY + +    
Sbjct: 120 ARQIILDLKGKLSDVDTSFAK---MQRKEEDLTAGLTEALEEAILALEALGYNKKELKKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  + K++         I+LAL+ +
Sbjct: 177 IPKLEKED---LSSDAYIKLALQLM 198


>gi|78212692|ref|YP_381471.1| Holliday junction DNA helicase subunit RuvA [Synechococcus sp.
           CC9605]
 gi|123756909|sp|Q3AKG6|RUVA_SYNSC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|78197151|gb|ABB34916.1| Holliday junction DNA helicase RuvA [Synechococcus sp. CC9605]
          Length = 214

 Score =  141 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 49/214 (22%), Positives = 87/214 (40%), Gaps = 12/214 (5%)

Query: 1   MIGKIKGNIEGL----YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           M+G +KG I           + ++  GV Y +    R    L +      L++   +  D
Sbjct: 1   MVGWLKGLIVYKLQRGNRSQITLNCNGVGYEVQITQREWLTL-ENDQTIQLWIHQSISAD 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
             + FGF S  +R  F  L SV GVG +  M ++    + ELVE+I   + + + +  GI
Sbjct: 60  NWQFFGFKSTQERDIFRELISVNGVGPQAGMALMQECKSQELVEAISNGDLRRLCKAQGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             + A R+  EL+    + + +   D +    E      MP    +  + L  LGY   +
Sbjct: 120 GKRTAERLAVELRASIAAFAGM---DPAPSLAEGVSSEQMPESGADVEATLSMLGYDDLE 176

Query: 177 ATTAVVSVLKKE----KNIADDSQIIRLALRAIS 206
              A+ ++ +          D    +R  L+ +S
Sbjct: 177 VRRAIRAIAEGSDGPPPPGDDQDAWLRGCLQWLS 210


>gi|256375826|ref|YP_003099486.1| Holliday junction DNA helicase RuvA [Actinosynnema mirum DSM 43827]
 gi|255920129|gb|ACU35640.1| Holliday junction DNA helicase RuvA [Actinosynnema mirum DSM 43827]
          Length = 198

 Score =  141 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +++V GV + +     TL  L + G+   L     +R+D + L
Sbjct: 1   MISSLRGQVLSIGLDHAVVEVGGVGFAVQATPATLGSL-RRGEEAVLSTALVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF     RQ F LLQ+V G+G R+A+  L+ +   +L  ++   +  V+ Q+PGI  K 
Sbjct: 60  FGFADADSRQLFGLLQTVSGIGPRLALATLAVLEPEKLRAALAEGSVSVLTQVPGIGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K   L++    D          + ++       + AL+ LG+   QA TA
Sbjct: 120 AERLVIELRDKVGQLATAPASD---------GVVAVGRVRDQVVEALLGLGFPAKQAETA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  VL ++ ++   S ++R AL  +
Sbjct: 171 VDGVLAEDPSLG-TSVVLRKALSGL 194


>gi|269795058|ref|YP_003314513.1| Holliday junction DNA helicase subunit RuvA [Sanguibacter keddieii
           DSM 10542]
 gi|269097243|gb|ACZ21679.1| Holliday junction DNA helicase subunit RuvA [Sanguibacter keddieii
           DSM 10542]
          Length = 206

 Score =  141 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 53/209 (25%), Positives = 102/209 (48%), Gaps = 12/209 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G ++ +  D  +++V G+ Y++Y    TL+ L ++G   ++     +R+D + L
Sbjct: 1   MIASLSGTVQTVRLDSAVLNVAGIGYLVYATPATLATL-RVGAEASVATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +R  F   Q+V GVG R+A+ +L+  T   L  ++   + K + ++PGI  K 
Sbjct: 60  YGFSDDDERSVFEASQTVSGVGPRLALAMLAVHTPDGLRRALAGGDVKALTRVPGIGAKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL  K    + +    ++           +       + ALV+LG+    A  A
Sbjct: 120 AQRLILELGDKLGQPTGLDGGSVA-------PTAGLGDQRDQVVEALVSLGWSAKVAEDA 172

Query: 181 VVSVLKKEK----NIADDSQIIRLALRAI 205
           + +VL +        +D   ++R AL+ +
Sbjct: 173 IGTVLAESGATSVTTSDVPVVLRSALKVL 201


>gi|163742241|ref|ZP_02149629.1| Holliday junction DNA helicase motor protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161384571|gb|EDQ08952.1| Holliday junction DNA helicase motor protein [Phaeobacter
           gallaeciensis 2.10]
          Length = 229

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 116/227 (51%), Gaps = 22/227 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +E    D+VLIDV+GV YI+YC  RT++ L   G+   L+ +  +R+D ++L
Sbjct: 1   MIGKLTGRLEYRSSDHVLIDVRGVGYIVYCSDRTMATLPGTGEAVALYTDMVVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S ++++W  LL SVQGVGA+V++ +L  +    +  +I L +   +    G+  K 
Sbjct: 61  YGFPSLMEKEWHRLLTSVQGVGAKVSLAILGTLGPEGVSRAIALGDWATVKAAKGVGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA----------------- 163
           A RI+ +LK KA  + ++       ++     +         A                 
Sbjct: 121 AQRIVLDLKDKAPGVMAMGGTIADAMDGPGLDVVEPAEPVSTAKKPRKAPPKAPSGAAAA 180

Query: 164 ----ISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
               +SAL NLGYG   A  AV        + A+++++IR ALR ++
Sbjct: 181 SAGALSALGNLGYGPSDAAAAVAEAAATYPD-ANEAELIRAALRLLA 226


>gi|293400498|ref|ZP_06644643.1| holliday junction DNA helicase RuvA [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305524|gb|EFE46768.1| holliday junction DNA helicase RuvA [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 194

 Score =  141 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 97/206 (47%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G I     D ++ID  G+ Y +Y        L       TLF   H+R+D I L
Sbjct: 1   MIAFIRGTIHSYSNDSLIIDNNGIGYRVYIANPQAVRL---NTEVTLFTYQHVREDAITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +   F+ L SV+GVG + A+G+L+   A  ++ +I   + K +  +PGI  K 
Sbjct: 58  FGFTSMEEHDLFLQLISVKGVGPKTALGMLAVCPAKNMIMAIENNDVKTLKGLPGIGAKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LK K +   + ++                 +  ++AI AL  LGY   + ++ 
Sbjct: 118 ASQIVLDLKNKLVEEVTEIE-------------AKENAQLLDAIEALKALGYKNAEISS- 163

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V   L   +      Q IR AL  ++
Sbjct: 164 VKKELMAMEESTTSDQYIRKALSILA 189


>gi|312139494|ref|YP_004006830.1| holliday junction DNA helicase ruva [Rhodococcus equi 103S]
 gi|311888833|emb|CBH48145.1| Holliday junction DNA helicase RuvA [Rhodococcus equi 103S]
          Length = 201

 Score =  141 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 97/205 (47%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +I+  GV Y +     TL+ L + GD   L     +R+D + L
Sbjct: 1   MIASVRGEVLEVGLDHAVIEAAGVGYRVNATPATLATL-RRGDESRLLTAMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F LLQ+V GVG R+AM +L+ +    L +++   N   + ++PGI  + 
Sbjct: 60  YGFADAESRDLFGLLQTVSGVGPRLAMAILAVLEPEALRKALAEGNVTALTRVPGIGKRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K  +++       +          S        + AL  LG+  + A  A
Sbjct: 120 AERMVVELRDKVEAVAVTGDLPGAGA------ATSASVVRDQVVEALTGLGFKLEHAEKA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             +V+  +   A  S ++R AL  +
Sbjct: 174 TDTVVAADPE-APTSTVLRSALALL 197


>gi|229597664|pdb|2ZTC|A Chain A, Mtruva Form Ii
 gi|229597665|pdb|2ZTC|B Chain B, Mtruva Form Ii
 gi|229597666|pdb|2ZTC|C Chain C, Mtruva Form Ii
 gi|229597667|pdb|2ZTC|D Chain D, Mtruva Form Ii
 gi|229597668|pdb|2ZTD|A Chain A, Mtruva Form Iii
 gi|229597669|pdb|2ZTD|B Chain B, Mtruva Form Iii
 gi|229597670|pdb|2ZTE|A Chain A, Mtruva Form Iv
          Length = 212

 Score =  141 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 92/205 (44%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+V+I+  GV Y +     TL+ L + G    L     +R+D + L
Sbjct: 17  MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATL-RQGTEARLITAMIVREDSMTL 75

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F+ L SV GVG R+AM  L+   A  L + +   N   + ++PGI  + 
Sbjct: 76  YGFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRG 135

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K                   A   +  +     + ALV LG+   QA  A
Sbjct: 136 AERMVLELRDKV-----------GVAATGGALSTNGHAVRSPVVEALVGLGFAAKQAEEA 184

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             +VL    + A  S  +R AL  +
Sbjct: 185 TDTVLAANHD-ATTSSALRSALSLL 208


>gi|114776334|ref|ZP_01451379.1| putative Holliday junction DNA helicase RuvA [Mariprofundus
           ferrooxydans PV-1]
 gi|114553164|gb|EAU55562.1| putative Holliday junction DNA helicase RuvA [Mariprofundus
           ferrooxydans PV-1]
          Length = 188

 Score =  141 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 68/207 (32%), Positives = 108/207 (52%), Gaps = 20/207 (9%)

Query: 1   MIGKIKGNIEGLYE-DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG + G +  L     VL+   G+ Y +   ++TL  L ++G+   L + T++R+DQI 
Sbjct: 1   MIGWLSGTVRALDPAGSVLLVTGGIGYDVSVSVQTLCKL-RLGEAAELSIHTYVREDQIT 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF +  +R+ F  L SV G+GAR+A+ ++  ++  EL+ +I   +   IA+ PGI  K
Sbjct: 60  LFGFANSNEREIFRKLTSVSGIGARMALNLMGGMSIEELIGAIEHADDLAIARTPGIGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ EL+GK  S+++     +S             + A    SAL NLGY   Q   
Sbjct: 120 TAQRLILELQGKLGSVAAEGGAAIS-------------NKADEVRSALTNLGYKPAQIDL 166

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           A+  V       AD   + R AL+A+S
Sbjct: 167 ALKHV-----EPADFESMFRAALKAMS 188


>gi|332982456|ref|YP_004463897.1| Holliday junction DNA helicase RuvA [Mahella australiensis 50-1
           BON]
 gi|332700134|gb|AEE97075.1| Holliday junction DNA helicase RuvA [Mahella australiensis 50-1
           BON]
          Length = 194

 Score =  141 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 54/204 (26%), Positives = 97/204 (47%), Gaps = 11/204 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  + G IE    +YV+IDV G+ + +Y   + L+ +  +     L+V  H+ +  + L
Sbjct: 1   MLAYLDGLIEHKSSNYVIIDVNGIGFKVYATTKILADMPDVKSRTRLYVHWHIGEGNMAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S+     F  L SV GVG + A+ ++  ++  +++ +I+  + K +++  GI  K 
Sbjct: 61  FGFASEQQVDMFESLISVSGVGPKGALALMDALSYEQILLAIVQGDEKSLSRAKGIGAKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K      +   D+              S    A+ AL++LGY   +A   
Sbjct: 121 AQRIIMELKDKLHMPREIKSSDIG--------ERIDESTYGQAVEALISLGYAPAEAARV 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           +  V     +     ++I+ ALR 
Sbjct: 173 LEGVTT---DGRSLEEVIKEALRR 193


>gi|262197092|ref|YP_003268301.1| Holliday junction DNA helicase RuvA [Haliangium ochraceum DSM
           14365]
 gi|262080439|gb|ACY16408.1| Holliday junction DNA helicase RuvA [Haliangium ochraceum DSM
           14365]
          Length = 210

 Score =  141 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 96/210 (45%), Gaps = 7/210 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       V+++  GV Y +   I TL  L   G+  TL + TH  + ++ L
Sbjct: 1   MIGRLRGTLVEQEGSMVIVECGGVGYEVTVSIHTLQSLPAEGEPVTLRIFTHALESRVAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMK 119
           +GF S L+R  F LL +V+ VG   A+G+LS  +   E+ E I    +  + ++ G+  K
Sbjct: 61  YGFGSTLERDLFDLLITVKKVGPSSAVGILSAGSGPAEIAEMIANGETSSLTRLRGVGKK 120

Query: 120 IASRIMTELKGKAISLSSV----VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
            A  ++ EL+ K   L +       +  +      A   S          AL+ LG+ Q 
Sbjct: 121 TAEMLVVELREKCELLLATHRVQGGRAAARAPAAAARPSSRGPLLDEVAQALLQLGWRQQ 180

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205
                V  +    ++      ++R ALRA+
Sbjct: 181 SVDQVVSELAPTAED--SLESLLRQALRAM 208


>gi|290769835|gb|ADD61608.1| putative protein [uncultured organism]
 gi|291542961|emb|CBL16071.1| Holliday junction DNA helicase, RuvA subunit [Ruminococcus bromii
           L2-63]
          Length = 200

 Score =  141 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 95/205 (46%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  ++G +  +  +  +++  GV Y+    + TL  + K+    TL+   ++R+D + L
Sbjct: 1   MLYSVRGKLIAIESNAAVVECGGVGYMCQTTMNTLKAV-KLNTEVTLYTYLNVREDAVDL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  + + F  L SV GVG +  + VLS ++  ++  +I   + K I +  GI  KI
Sbjct: 60  FGFATKAELETFKNLISVSGVGPKAGLAVLSELSPEQVAMAIASDDLKTITRAQGIGKKI 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K        ++D S     Q  +         AI AL  LGY        
Sbjct: 120 AQRIVLELKDKLAK---AAKEDSSFAQAAQNSVNVSTGNVPKAIEALGVLGYSPSD---- 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  VL    +     Q+I L L+ +
Sbjct: 173 VSPVLATLDSALPVEQLISLTLKQM 197


>gi|282899464|ref|ZP_06307430.1| DNA recombination protein, RuvA [Cylindrospermopsis raciborskii
           CS-505]
 gi|281195621|gb|EFA70552.1| DNA recombination protein, RuvA [Cylindrospermopsis raciborskii
           CS-505]
          Length = 214

 Score =  141 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 55/213 (25%), Positives = 94/213 (44%), Gaps = 14/213 (6%)

Query: 1   MIGKIKGNIEGLYEDY-----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55
           MI  +KG + G+         + ++V G+ Y +Y P R  + L   GD   +F    +R+
Sbjct: 1   MISYLKGIVAGVQTGSPNRWILTLEVNGIGYDVYIPQRLANQLTNNGDVAHIFTHYQIRE 60

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           +   L+GF S  +R  F  L SV G+G  +A+ ++  +   ELV++II  N+ ++ Q PG
Sbjct: 61  ELPILYGFSSPAERDLFRHLLSVTGIGTAMAIALIDTLELPELVQAIISGNTTMLVQTPG 120

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           +  K A R+  ELKGK +                 A     P+        L  LGY   
Sbjct: 121 VGKKTAERLCLELKGKLVEWR-------KSAGFFVATGGPPPAILEEVQMTLFALGYTPH 173

Query: 176 QATTAVVSVLKK--EKNIADDSQIIRLALRAIS 206
           + + A+  + +       +     I+ A+  +S
Sbjct: 174 EVSHALHVISEDIGLPKNSYPEDWIKQAIAHLS 206


>gi|156741100|ref|YP_001431229.1| Holliday junction DNA helicase RuvA [Roseiflexus castenholzii DSM
           13941]
 gi|189045765|sp|A7NIB1|RUVA_ROSCS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|156232428|gb|ABU57211.1| Holliday junction DNA helicase RuvA [Roseiflexus castenholzii DSM
           13941]
          Length = 197

 Score =  141 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 63/204 (30%), Positives = 103/204 (50%), Gaps = 11/204 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+V+I+  G+ ++IY P + L+  G IG    LF    +R+D + L
Sbjct: 1   MIASVRGTLIAVAADHVVIETGGIGWMIYAPRQVLAAPGDIGAEMRLFTCLIVREDALTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +   RQ F  L SV GVG + A+ +LS  T  EL  +I   +   +A+ P I  K+
Sbjct: 61  YGFKTVEQRQLFETLLSVTGVGPQAALNLLSSGTTDELRLAIATGDVARLARTPRIGKKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK       V   +S          ++ +        LV+LG+   +A+TA
Sbjct: 121 AERLVLELKGKLDIKGLPVAPGVS---------PAVAAVNAELSEMLVSLGFSSAEASTA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           + ++        D  + +RLALR 
Sbjct: 172 IAALPPDAP--LDLEERLRLALRY 193


>gi|15609730|ref|NP_217109.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           H37Rv]
 gi|15842133|ref|NP_337170.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           CDC1551]
 gi|31793777|ref|NP_856270.1| Holliday junction DNA helicase RuvA [Mycobacterium bovis AF2122/97]
 gi|121638478|ref|YP_978702.1| Holliday junction DNA helicase RuvA [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|148662432|ref|YP_001283955.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           H37Ra]
 gi|148823788|ref|YP_001288542.1| Holliday junction DNA helicase motor protein [Mycobacterium
           tuberculosis F11]
 gi|167967067|ref|ZP_02549344.1| Holliday junction DNA helicase motor protein [Mycobacterium
           tuberculosis H37Ra]
 gi|215404543|ref|ZP_03416724.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           02_1987]
 gi|215412369|ref|ZP_03421129.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           94_M4241A]
 gi|215431548|ref|ZP_03429467.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           EAS054]
 gi|215446844|ref|ZP_03433596.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           T85]
 gi|218754331|ref|ZP_03533127.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis GM
           1503]
 gi|219558597|ref|ZP_03537673.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           T17]
 gi|224990972|ref|YP_002645659.1| Holliday junction DNA helicase motor protein [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|253798325|ref|YP_003031326.1| Holliday junction DNA helicase ruvA [Mycobacterium tuberculosis KZN
           1435]
 gi|254232711|ref|ZP_04926038.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis C]
 gi|254365262|ref|ZP_04981307.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           str. Haarlem]
 gi|254551644|ref|ZP_05142091.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260187606|ref|ZP_05765080.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           CPHL_A]
 gi|260201721|ref|ZP_05769212.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           T46]
 gi|260205915|ref|ZP_05773406.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           K85]
 gi|289444132|ref|ZP_06433876.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           T46]
 gi|289448243|ref|ZP_06437987.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           CPHL_A]
 gi|289553618|ref|ZP_06442828.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis KZN
           605]
 gi|289570764|ref|ZP_06450991.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           T17]
 gi|289575303|ref|ZP_06455530.1| Holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           K85]
 gi|289746386|ref|ZP_06505764.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           02_1987]
 gi|289754712|ref|ZP_06514090.1| holliday junction DNA helicase motor protein [Mycobacterium
           tuberculosis EAS054]
 gi|289758724|ref|ZP_06518102.1| holliday junction DNA helicase motor protein [Mycobacterium
           tuberculosis T85]
 gi|289762766|ref|ZP_06522144.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis GM
           1503]
 gi|294994298|ref|ZP_06799989.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           210]
 gi|297635203|ref|ZP_06952983.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis KZN
           4207]
 gi|297732196|ref|ZP_06961314.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis KZN
           R506]
 gi|298526068|ref|ZP_07013477.1| holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           94_M4241A]
 gi|306776867|ref|ZP_07415204.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu001]
 gi|306780631|ref|ZP_07418968.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu002]
 gi|306785395|ref|ZP_07423717.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu003]
 gi|306789995|ref|ZP_07428317.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu004]
 gi|306794076|ref|ZP_07432378.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu005]
 gi|306798490|ref|ZP_07436792.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu006]
 gi|306804353|ref|ZP_07441021.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu008]
 gi|306807607|ref|ZP_07444275.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu007]
 gi|306969809|ref|ZP_07482470.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu009]
 gi|306972982|ref|ZP_07485643.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu010]
 gi|307080692|ref|ZP_07489862.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu011]
 gi|307085281|ref|ZP_07494394.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu012]
 gi|313659531|ref|ZP_07816411.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis KZN
           V2475]
 gi|54039572|sp|P66745|RUVA_MYCBO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|54042201|sp|P66744|RUVA_MYCTU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230567|sp|A1KLU1|RUVA_MYCBP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230571|sp|A5U5U3|RUVA_MYCTA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254767377|sp|C1AF62|RUVA_MYCBT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|114794219|pdb|2H5X|A Chain A, Ruva From Mycobacterium Tuberculosis
 gi|114794220|pdb|2H5X|B Chain B, Ruva From Mycobacterium Tuberculosis
 gi|114794221|pdb|2H5X|C Chain C, Ruva From Mycobacterium Tuberculosis
 gi|114794222|pdb|2H5X|D Chain D, Ruva From Mycobacterium Tuberculosis
 gi|1478219|emb|CAB01282.1| PROBABLE HOLLIDAY JUNCTION DNA HELICASE RUVA [Mycobacterium
           tuberculosis H37Rv]
 gi|13882417|gb|AAK46984.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           CDC1551]
 gi|31619371|emb|CAD94809.1| PROBABLE HOLLIDAY JUNCTION DNA HELICASE RUVA [Mycobacterium bovis
           AF2122/97]
 gi|121494126|emb|CAL72604.1| Probable holliday junction DNA helicase ruvA [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|124601770|gb|EAY60780.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis C]
 gi|134150775|gb|EBA42820.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           str. Haarlem]
 gi|148506584|gb|ABQ74393.1| Holliday junction DNA helicase motor protein [Mycobacterium
           tuberculosis H37Ra]
 gi|148722315|gb|ABR06940.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           F11]
 gi|224774085|dbj|BAH26891.1| Holliday junction DNA helicase motor protein [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|253319828|gb|ACT24431.1| Holliday junction DNA helicase ruvA [Mycobacterium tuberculosis KZN
           1435]
 gi|289417051|gb|EFD14291.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           T46]
 gi|289421201|gb|EFD18402.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           CPHL_A]
 gi|289438250|gb|EFD20743.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis KZN
           605]
 gi|289539734|gb|EFD44312.1| Holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           K85]
 gi|289544518|gb|EFD48166.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           T17]
 gi|289686914|gb|EFD54402.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           02_1987]
 gi|289695299|gb|EFD62728.1| holliday junction DNA helicase motor protein [Mycobacterium
           tuberculosis EAS054]
 gi|289710272|gb|EFD74288.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis GM
           1503]
 gi|289714288|gb|EFD78300.1| holliday junction DNA helicase motor protein [Mycobacterium
           tuberculosis T85]
 gi|298495862|gb|EFI31156.1| holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           94_M4241A]
 gi|308214722|gb|EFO74121.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu001]
 gi|308326462|gb|EFP15313.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu002]
 gi|308329914|gb|EFP18765.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu003]
 gi|308333529|gb|EFP22380.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu004]
 gi|308337556|gb|EFP26407.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu005]
 gi|308341223|gb|EFP30074.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu006]
 gi|308346003|gb|EFP34854.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu007]
 gi|308349030|gb|EFP37881.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu008]
 gi|308352726|gb|EFP41577.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu009]
 gi|308357598|gb|EFP46449.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu010]
 gi|308361540|gb|EFP50391.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu011]
 gi|308365151|gb|EFP54002.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           SUMu012]
 gi|323718789|gb|EGB27946.1| Holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           CDC1551A]
 gi|326904206|gb|EGE51139.1| Holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           W-148]
 gi|328458095|gb|AEB03518.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis KZN
           4207]
          Length = 196

 Score =  141 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 92/205 (44%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+V+I+  GV Y +     TL+ L + G    L     +R+D + L
Sbjct: 1   MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATL-RQGTEARLITAMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F+ L SV GVG R+AM  L+   A  L + +   N   + ++PGI  + 
Sbjct: 60  YGFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K                   A   +  +     + ALV LG+   QA  A
Sbjct: 120 AERMVLELRDKV-----------GVAATGGALSTNGHAVRSPVVEALVGLGFAAKQAEEA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             +VL    + A  S  +R AL  +
Sbjct: 169 TDTVLAANHD-ATTSSALRSALSLL 192


>gi|288930025|ref|ZP_06423866.1| holliday junction DNA helicase RuvA [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288328684|gb|EFC67274.1| holliday junction DNA helicase RuvA [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 205

 Score =  141 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 59/209 (28%), Positives = 98/209 (46%), Gaps = 9/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM----RQD 56
           MI  IKG++  L     +I+  GV Y +   + T + + +  D   LFV   +    R D
Sbjct: 1   MIEYIKGDLAELTPAMAVIEAAGVGYALNISLNTYTAI-QGKDKVKLFVHEALVTGGRDD 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF +  +R+ + LL SV GVGA  A  +LS ++  EL   I   + K++  + GI
Sbjct: 60  SYTLYGFATRQERELYRLLISVSGVGANSARMILSGMSPAELCNVIAAGDDKMLKTVKGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             K A RI+ +LK K ++     +     V           +    A+ AL  LG+    
Sbjct: 120 GAKTAQRIIVDLKDKIVTSGVAQEL---SVPTNANATVMNTAVKDEAVGALTMLGFAPSA 176

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           +   VV +LK++  +    Q+++ AL+ I
Sbjct: 177 SAKVVVEILKEQPELP-VEQVVKAALKMI 204


>gi|260435378|ref|ZP_05789348.1| holliday junction DNA helicase RuvA [Synechococcus sp. WH 8109]
 gi|260413252|gb|EEX06548.1| holliday junction DNA helicase RuvA [Synechococcus sp. WH 8109]
          Length = 222

 Score =  141 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 53/214 (24%), Positives = 91/214 (42%), Gaps = 12/214 (5%)

Query: 1   MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG ++G     +       VL+   GV Y ++   R    L   GD   L++    R+D
Sbjct: 9   MIGWLQGRPMECWTQGNRSGVLLLCGGVGYEVHLTERHQQNLPADGD-LNLWIHQVQRED 67

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF    +R  F LL SV GVG +  + ++      ELVE+I   + + + +  GI
Sbjct: 68  GSSLYGFPLRQERDLFRLLISVSGVGPQAGLALMQECKPQELVEAISSGDLRRLCKAQGI 127

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             + A R+  EL+    S+++    D +    E      MP+   +  + L  LGY   +
Sbjct: 128 GKRTAERLAVELR---ASIAAFAGVDPAPSLAEGVSSEQMPASGADVEATLSMLGYDDLE 184

Query: 177 ATTAVVSVLKKE----KNIADDSQIIRLALRAIS 206
              A+ ++ +          D    +R  L+ +S
Sbjct: 185 IRRAIRAIAEGADGQPPAGDDQDAWLRGCLQWLS 218


>gi|325672616|ref|ZP_08152312.1| crossover junction ATP-dependent DNA helicase RuvA [Rhodococcus
           equi ATCC 33707]
 gi|325556493|gb|EGD26159.1| crossover junction ATP-dependent DNA helicase RuvA [Rhodococcus
           equi ATCC 33707]
          Length = 201

 Score =  141 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 97/205 (47%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +I+  GV Y +     TL+ L + GD   L     +R+D + L
Sbjct: 1   MIASVRGEVLEVGLDHAVIEAAGVGYRVNATPATLATL-RRGDESRLLTAMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F LLQ+V GVG R+AM +L+ +    L +++   N   + ++PGI  + 
Sbjct: 60  YGFADAESRDLFGLLQTVSGVGPRLAMAILAVLEPEALRKALAEGNVTALTRVPGIGKRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K  +++       +          S        + AL  LG+  + A  A
Sbjct: 120 AERMVVELRDKVEAVAVTGDLPGAGA------ATSASIVRDQVVEALTGLGFKLEHAEKA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             +V+  +   A  S ++R AL  +
Sbjct: 174 TDTVVAADPE-APTSTVLRSALALL 197


>gi|227549154|ref|ZP_03979203.1| Holliday junction DNA helicase motor protein [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227078774|gb|EEI16737.1| Holliday junction DNA helicase motor protein [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 206

 Score =  141 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 55/208 (26%), Positives = 95/208 (45%), Gaps = 8/208 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +  D+ +I+  GV Y +     TL+ L + G+   +     ++ D + L
Sbjct: 1   MIDSLHGEVLSIGLDHAVIECAGVGYRLLAGPPTLARLTR-GETTRVLTSMVVKDDGVTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQN---SKVIAQIPGIS 117
           +GF  D  R  F  LQ+V G+G ++A+  LS     EL   I   +    K I  IPG+ 
Sbjct: 60  YGFADDGARTMFHRLQTVSGLGPKLALACLSVFEPAELAGLITAGDAAAIKRIQTIPGVG 119

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            K+A R+  ELK K   L +  +   +      A        A   + AL+ LG+    A
Sbjct: 120 KKMAERMALELKDKIDGLYATSEPGAAPSAPVTAGTSL---AAEQVVEALIGLGFADKVA 176

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
              V +++++    +  S+++R AL  +
Sbjct: 177 RGVVDTLIQERPGDSS-SELLRAALTQL 203


>gi|147669064|ref|YP_001213882.1| Holliday junction DNA helicase RuvA [Dehalococcoides sp. BAV1]
 gi|146270012|gb|ABQ17004.1| Holliday junction DNA helicase subunit RuvA [Dehalococcoides sp.
           BAV1]
          Length = 194

 Score =  140 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 100/204 (49%), Gaps = 14/204 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E   +D+ +I+V GV +  + P  + + +G +G    +F   H+R+D + L
Sbjct: 1   MISSLNGILEASGKDWAVINVSGVGFRCHMPATSSALIGGLGQRVRVFTHLHVREDALSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +   F  L  V G+G ++ + +LS + A  L  +II  N+++++ IPGI  K 
Sbjct: 61  FGFATTEELSLFETLIDVSGIGPKLGLAMLSVMNAEALASAIISGNAELLSTIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           +SRI+ ELK K               N E   +  +     + ++ L  LGY   +A  A
Sbjct: 121 SSRIILELKDKIAK------------NWEAGVLSQVTEANSDILATLTALGYSSSEAAKA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           + S+   +       + I+LAL  
Sbjct: 169 ISSL--GDNGDLPLEERIKLALNY 190


>gi|317505321|ref|ZP_07963249.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella
           salivae DSM 15606]
 gi|315663535|gb|EFV03274.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella
           salivae DSM 15606]
          Length = 205

 Score =  140 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 60/209 (28%), Positives = 104/209 (49%), Gaps = 9/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM----RQD 56
           MI  IKG +  L     +++  GV Y +   + T S + +      L+V   +    R D
Sbjct: 1   MIEYIKGQLAELTPALAVVEAAGVGYALNISLTTYSGI-QGKKEVKLYVHEALTTGGRDD 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              LFGF++  +R+ + LL +V GVGA  A  +LS +  TEL  +I   + ++I  + GI
Sbjct: 60  SFTLFGFVNKQERELYRLLITVSGVGANTARMMLSSMNPTELCNAIANGDERMIKTVKGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
            +K A RI+ +L+ K ++     +     V  E+A      +    A++AL  LG+    
Sbjct: 120 GLKTAQRIIVDLRDKIMASGIANEL---HVGGEKAESTLNNAVKEEAVAALTMLGFSPAP 176

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
               VVS+L+K+ N+    Q+++ AL+ +
Sbjct: 177 IAKVVVSILQKQANLP-VEQVVKEALKLL 204


>gi|81427980|ref|YP_394979.1| Holliday junction DNA helicase RuvA [Lactobacillus sakei subsp.
           sakei 23K]
 gi|90135183|sp|Q38YR0|RUVA_LACSS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|78609621|emb|CAI54667.1| Holliday junction DNA helicase RuvA [Lactobacillus sakei subsp.
           sakei 23K]
          Length = 203

 Score =  140 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  +   YV+++VQG+ Y +            + +   +FV   +R   I L
Sbjct: 1   MYEYLKGLVTAVNPYYVVLEVQGIGYQLQV-ANPYRYTESMSEVVQIFVHQAVRDTDITL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    ++Q F  L SV G+G + A+ +L+    + L+++I+  +   + + PG+  K 
Sbjct: 60  FGFYDLDEKQLFQKLISVSGIGPKSALAILANSDHSGLIQAIMNDDIGYLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I  +LKGK   L       +                  +A++AL  LGY   +    
Sbjct: 120 AQQIALDLKGKLGDLEQ--SATLVGQTAIDLGSQGDSPELSDALAALSALGYSAREVKAI 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +   +       Q +R  LR +
Sbjct: 178 TPKL--TDFAAQTTDQYLREGLRLL 200


>gi|304383692|ref|ZP_07366151.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella
           marshii DSM 16973]
 gi|304335216|gb|EFM01487.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella
           marshii DSM 16973]
          Length = 204

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 56/209 (26%), Positives = 99/209 (47%), Gaps = 10/209 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM----RQD 56
           MI  IKG +        +I+  GV Y +   + T + + +      L+V   +    R D
Sbjct: 1   MIEYIKGELSEATPALAVIEASGVGYALNISLNTYTSV-QGKKEVKLYVHEVLSAGGRDD 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF +  +R+ + LL SV GVGA  A  +LS +T  EL   I   + +++  + GI
Sbjct: 60  SFTLYGFFTRQERELYRLLISVSGVGANTARMILSAMTTAELCNVISTGDERMLKGVKGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
            +K A RI+ +LK K +S     +   +  +     + +  +    A+ AL  LG+    
Sbjct: 120 GLKTAQRIIIDLKDKIVSSGIAQELPTTAGH----VVATNSAVKDEAVGALTMLGFSPAP 175

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           ++  VV +LK   ++    Q+++ AL+ I
Sbjct: 176 SSKVVVEILKMHPDLP-VEQVVKQALKMI 203


>gi|242373942|ref|ZP_04819516.1| crossover junction endodeoxyribonuclease [Staphylococcus
           epidermidis M23864:W1]
 gi|242348296|gb|EES39898.1| crossover junction endodeoxyribonuclease [Staphylococcus
           epidermidis M23864:W1]
          Length = 200

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 101/205 (49%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  L+  +V+++  G+ Y I  P  +      +     ++    +R+D   L
Sbjct: 1   MYAYVKGTLSQLFPTHVVVETAGIGYEIQTP-NSYRFQTYLDKEVQIYTSLIVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+S+ ++  F+ L  V G+G + A+ +L+  T  E+ ++I  +N   + Q PGI  K 
Sbjct: 60  YGFISEEEKDMFLSLIKVTGIGPKSALAILAASTPNEVKQAIENENDAYLTQFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK      + +++   + +   +          A+ AL  LGY + + +  
Sbjct: 120 ARQIVLDLKGKVT----INEENSDTLLQVDLNSTEQSQIVKEAMLALEALGYSKRELSK- 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  VL K+ +I    + ++L L+ +
Sbjct: 175 VEKVLNKQ-SITSVDEAVKLGLQTL 198


>gi|291456789|ref|ZP_06596179.1| holliday junction DNA helicase RuvA [Bifidobacterium breve DSM
           20213]
 gi|291382066|gb|EFE89584.1| holliday junction DNA helicase RuvA [Bifidobacterium breve DSM
           20213]
          Length = 208

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 61/210 (29%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +E +  D  LIDV GV Y +      LS L   G    ++   ++ QD + L
Sbjct: 1   MIGMLTGRVESVEADTALIDVGGVGYEVRMSATDLSRL-HTGTEARVYTYMNLSQDAVTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GFL    ++ F+ L  V G+G +VA  +LS +TA +L  +I   ++  +A+ PG+  K 
Sbjct: 60  HGFLDQASKKTFLQLIKVSGIGPKVAQSLLSTLTAGQLARAIADNDAAALAKAPGLGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELKG     S  + Q              + +     I  L++LG+ Q  A  A
Sbjct: 120 AQKIILELKG-----SIDLSQIEGASPSGAKVQAQVDTSMEQVIEGLISLGWRQQDAQQA 174

Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205
           V    +        +  D  +++RLAL  +
Sbjct: 175 VAEACEDNDIPTPLDTDDVPRVLRLALALM 204


>gi|296170845|ref|ZP_06852406.1| crossover junction ATP-dependent DNA helicase RuvA [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295894501|gb|EFG74242.1| crossover junction ATP-dependent DNA helicase RuvA [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 197

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 97/205 (47%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G + G+  D+ +I+  GV Y +     TL+ L + G    L     +R+D + L
Sbjct: 1   MIASVRGEVLGVALDHAVIEAAGVGYRVNATPSTLATL-RTGTEARLITAMVVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F+ L +V GVG R+AM  L+   A  L + +   +   + ++PGI  + 
Sbjct: 60  YGFTDAETRDLFLTLLTVSGVGPRLAMATLAVHDAAALRQVLHDGDVTALTRVPGIGKRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K  + ++             A + +  +     + ALV LG+   QA  A
Sbjct: 120 AERMVLELRDKVGAAAAAG----------GASVVNGHAVRGPVVEALVGLGFAVKQAEEA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              VL  E++ A  S  +R AL  +
Sbjct: 170 TDKVLATEQD-ATTSGALRAALSLL 193


>gi|33862917|ref|NP_894477.1| Holliday junction DNA helicase RuvA [Prochlorococcus marinus str.
           MIT 9313]
 gi|44888415|sp|Q7V7T9|RUVA_PROMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|33634833|emb|CAE20819.1| putative holliday junction DNA helicase RuvA [Prochlorococcus
           marinus str. MIT 9313]
          Length = 225

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 87/221 (39%), Gaps = 15/221 (6%)

Query: 1   MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG ++G     ++      V++   GV Y +    R LS +    +   L++    R D
Sbjct: 1   MIGWLQGQKVEAWQQGTRQGVVLACAGVGYEVQIAPRHLSEMEHGQNTFILWIHQVQRDD 60

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              LFGF    +R  F  L  V GVG ++A+ +L      ELVE+I+  + + + Q  G+
Sbjct: 61  GSSLFGFPERRERDMFRTLIGVSGVGPQMALALLEECQTGELVEAIVQGDLRKLCQAQGV 120

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             + A R+  EL+ K    S          N          S        L  LGY   +
Sbjct: 121 GKRTAERLAVELRTKLAEFSCRDPGMSLVDNGVIDSHQLKDSSLHELQITLGGLGYEDLE 180

Query: 177 ATTAVVSVL-----------KKEKNIADDSQIIRLALRAIS 206
              A+ +V            +   +I D    +R +LR +S
Sbjct: 181 IRRAIRAVASGAAIGASDMPESVPSIDDTDAWLRASLRWLS 221


>gi|7766817|pdb|1D8L|A Chain A, E. Coli Holliday Junction Binding Protein Ruva Nh2 Region
           Lacking Domain Iii
 gi|7766818|pdb|1D8L|B Chain B, E. Coli Holliday Junction Binding Protein Ruva Nh2 Region
           Lacking Domain Iii
          Length = 149

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 41/144 (28%), Positives = 74/144 (51%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMS 144
           A R++ E+K +   L   +    +
Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAA 144


>gi|15674189|ref|NP_268364.1| Holliday junction DNA helicase motor protein [Lactococcus lactis
           subsp. lactis Il1403]
 gi|281492890|ref|YP_003354870.1| Holliday junction DNA helicase RuvA [Lactococcus lactis subsp.
           lactis KF147]
 gi|13878764|sp|Q9CDL2|RUVA_LACLA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|12725272|gb|AAK06305.1|AE006449_11 DNA helicase RuvA [Lactococcus lactis subsp. lactis Il1403]
 gi|281376542|gb|ADA66028.1| Holliday junction DNA helicase RuvA [Lactococcus lactis subsp.
           lactis KF147]
          Length = 197

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 90/205 (43%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +  +    ++IDV G+ Y+I       +    +     ++V   +R+D   L
Sbjct: 1   MFEYLNGKLVKISPTNIVIDVAGIGYLISV-ANPYAWSALMNTEVKIYVHQVIREDAHSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+++ ++  F+ L SV G+G + A+ +++      L+ +I   + K + + PG+  K 
Sbjct: 60  YGFVNEAEKALFLRLISVSGIGPKSALAIIAAADNEGLITAIDNSDIKYLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK  +  +V    +           +       AI AL  LGY   +    
Sbjct: 120 AMQMVLDLAGKFDATGTVGISLLDAG-------PAGNLALEEAIEALQALGYKATELKKI 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              + ++        + I+ AL+ +
Sbjct: 173 EKKLAQETG--LTSEEYIKSALKLM 195


>gi|73748284|ref|YP_307523.1| Holliday junction DNA helicase RuvA [Dehalococcoides sp. CBDB1]
 gi|289432333|ref|YP_003462206.1| Holliday junction DNA helicase RuvA [Dehalococcoides sp. GT]
 gi|90134867|sp|Q3ZZK6|RUVA_DEHSC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|73660000|emb|CAI82607.1| Holliday junction DNA helicase RuvA [Dehalococcoides sp. CBDB1]
 gi|288946053|gb|ADC73750.1| Holliday junction DNA helicase RuvA [Dehalococcoides sp. GT]
          Length = 194

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 14/204 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E   +D+ +I+V GV +  Y P  + + +G +G    +F   H+R+D + L
Sbjct: 1   MISSLNGILEASGKDWAVINVSGVGFRCYMPATSPALIGGLGQRVRVFTHLHVREDALSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +   F  L  V G+G ++ + +LS + A  L  +II  N+++++ IPGI  K 
Sbjct: 61  FGFATTEELSLFETLIDVSGIGPKLGLAMLSVMNAEALASAIISGNAELLSTIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           +SRI+ ELK K               N E   +  +     + ++ L  LGY   +A  A
Sbjct: 121 SSRIILELKDKIAK------------NWEAGVLSQVTEANSDILATLTALGYSSSEAAKA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           + S+   +       + I+LAL  
Sbjct: 169 ISSL--GDNGDLPLEERIKLALNY 190


>gi|50842639|ref|YP_055866.1| holliday junction DNA helicase RuvA [Propionibacterium acnes
           KPA171202]
 gi|282853888|ref|ZP_06263225.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes J139]
 gi|81611698|sp|Q6A8K8|RUVA_PROAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|50840241|gb|AAT82908.1| holliday junction DNA helicase RuvA [Propionibacterium acnes
           KPA171202]
 gi|282583341|gb|EFB88721.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes J139]
          Length = 201

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 53/208 (25%), Positives = 96/208 (46%), Gaps = 10/208 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI    G +      +V++D  GV   + CP  T +   +I    +L     +R++ + L
Sbjct: 1   MISHFSGTVSAAGPTWVVLDNHGVGIKVLCPPATAAS-ARINQDMSLHTSLVVREESLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   DR  F L+Q+  GVG ++A  ++S + A +L  +I  ++   + ++PGI  K 
Sbjct: 60  YGFVEADDRDAFELVQTASGVGPKLAAAIMSVLDAAQLATAITEEDDATLCRVPGIGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A++++ ELK K  +L+          +           +       LV LG+    A  A
Sbjct: 120 AAKMILELKDKVAALAPRGASASGATH-------VAAPWREQVAEGLVGLGWSTKDAEKA 172

Query: 181 VVSV--LKKEKNIADDSQIIRLALRAIS 206
           V  V  LK+         ++R ALR+++
Sbjct: 173 VDKVVALKEADPAMSIGNLMRAALRSLA 200


>gi|47097030|ref|ZP_00234603.1| holliday junction DNA helicase RuvA [Listeria monocytogenes str.
           1/2a F6854]
 gi|254898301|ref|ZP_05258225.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes J0161]
 gi|254912207|ref|ZP_05262219.1| holliday junction DNA helicase RuvA [Listeria monocytogenes J2818]
 gi|254936535|ref|ZP_05268232.1| holliday junction DNA helicase RuvA [Listeria monocytogenes F6900]
 gi|47014612|gb|EAL05572.1| holliday junction DNA helicase RuvA [Listeria monocytogenes str.
           1/2a F6854]
 gi|258609129|gb|EEW21737.1| holliday junction DNA helicase RuvA [Listeria monocytogenes F6900]
 gi|293590180|gb|EFF98514.1| holliday junction DNA helicase RuvA [Listeria monocytogenes J2818]
          Length = 201

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +  +Y++++   + Y I       S     G    +F+  H+R+D I L
Sbjct: 1   MYDYIKGTVTTITPEYIVVEAGQIGYQI-ITGNPFSFQRLEGIEAQVFLYQHVREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L SV G+G + A+ +++      L+ +I  ++   + + P +  K 
Sbjct: 60  FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLISAIESEDDVYLTKFPSVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   L+ VV  ++  V  E   +  +      A+ AL  LGY   +    
Sbjct: 120 ARQIILDLKGK---LADVVASEIVYVAPENDMVAGLSPQLEEAVLALEALGYSTRELKKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  + K+          I+LAL+ +
Sbjct: 177 IPKLAKEA--DLTSDAYIKLALQLM 199


>gi|283457993|ref|YP_003362600.1| holliday junction resolvasome, DNA-binding subunit [Rothia
           mucilaginosa DY-18]
 gi|283134015|dbj|BAI64780.1| holliday junction resolvasome, DNA-binding subunit [Rothia
           mucilaginosa DY-18]
          Length = 209

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 103/207 (49%), Gaps = 12/207 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +  D+ +IDV G   +++   RTLS L + G+  T+     +R++ + L
Sbjct: 4   MIASLTGRVAQVGLDHAVIDVNGFGMLVHATARTLSKL-RTGEEATVLTTMIVREESMTL 62

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F ++ SV G+G R+A+ VLS  TA E+  ++   + K   ++PGI  K 
Sbjct: 63  YGFSEPAEREVFDMMLSVSGIGPRIALAVLSVHTAAEVERAVATGDDKAFTKVPGIGPKG 122

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL GK I         +S    ++  +     +    + AL +LG+ +  A+ A
Sbjct: 123 ARRIVLELAGKLI---------LSDGQTDELPLSQGIVWKPQVLDALTSLGWSEKDASAA 173

Query: 181 VVSVLKKEKNIAD--DSQIIRLALRAI 205
           + + +K   +         +R  L ++
Sbjct: 174 IDAYVKHNPSAESEPVGVALRGVLASL 200


>gi|213692039|ref|YP_002322625.1| Holliday junction DNA helicase RuvA [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|254766945|sp|B7GR17|RUVA_BIFLI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|213523500|gb|ACJ52247.1| Holliday junction DNA helicase RuvA [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320458151|dbj|BAJ68772.1| holliday junction DNA helicase RuvA [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 208

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 60/210 (28%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +E +  D  LIDV GV Y    P   L  L   G    +F   ++ QD + L
Sbjct: 1   MIGMLTGRVESVETDTALIDVGGVGYETRMPATDLGRLHA-GQDACVFTYLNLSQDSVTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL    ++ F+ L  V G+G +VA  +L  +T ++L  +I   ++  +A+ PG+  K 
Sbjct: 60  YGFLDRDSKRVFLQLIKVSGIGPKVAQSLLGTMTPSQLARAIADNDAAALAKAPGLGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELKG     S  + Q          +  ++ +     +  LV+LG+ Q  A  A
Sbjct: 120 AQKIILELKG-----SVDLNQSDDASAGNAPYQPTVDAGVEQVVEGLVSLGWRQQDAQRA 174

Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205
           V     +          D  +++RLAL  +
Sbjct: 175 VNEACAENDVPMPLASDDAPRVLRLALARM 204


>gi|237785621|ref|YP_002906326.1| holliday junction DNA helicase [Corynebacterium kroppenstedtii DSM
           44385]
 gi|259495637|sp|C4LIX8|RUVA_CORK4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|237758533|gb|ACR17783.1| holliday junction DNA helicase [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 207

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 88/207 (42%), Gaps = 5/207 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +  +YV+I+  GV Y        L  L + G+   + V  ++R D I L
Sbjct: 1   MIDSLHGEVLHVGLNYVVIECSGVGYRATASPSLLGTL-RKGEDARILVTMNVRDDGIDL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           + F SD  RQ F +L+ V GVG   AM + S     E    I  ++   +  + GI  + 
Sbjct: 60  YAFESDEARQMFAMLRKVSGVGPTSAMAICSIFKPDEFARIITDEDDAELRNVKGIGKRT 119

Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A RI+ +LK K     S     +        +              ALV LG+ + QA  
Sbjct: 120 AERIIVDLKSKVAVFDSGDSASEPQSGVGGNSEAEVDSGVVGTVTQALVELGFPEKQAEK 179

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
              S   +       S+I++ ALR++S
Sbjct: 180 TATSAAAEGG---SVSEILKRALRSMS 203


>gi|119383447|ref|YP_914503.1| Holliday junction DNA helicase motor protein [Paracoccus
           denitrificans PD1222]
 gi|166230580|sp|A1AZW3|RUVA_PARDP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|119373214|gb|ABL68807.1| Holliday junction DNA helicase RuvA [Paracoccus denitrificans
           PD1222]
          Length = 223

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 72/221 (32%), Positives = 115/221 (52%), Gaps = 16/221 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+I G I    +D+VLIDV+GV YI++   RT + L   G    L+ E  +R+D ++L
Sbjct: 1   MIGRIAGVILHRAQDHVLIDVRGVGYIVHVSERTAANLPPAGQATALYTELLVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + L+++W  LL SVQGVGA+VA+ +L  +    L  ++ L +   + + PG+  K+
Sbjct: 61  FGFPTLLEKEWHRLLTSVQGVGAKVALAILGTLGPDGLSRALALGDWSALRKAPGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQ---------------QDMSCVNKEQAHICSMPSFAINAIS 165
           A R++ ELK KA ++ ++                 +             S      +A+S
Sbjct: 121 AQRVVMELKDKAPAVMALGGALTVDPGPLPEVELVEAAVPAPVPAKAAPSSAQATADALS 180

Query: 166 ALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           AL NLGY   +A +AV     +E      + +IR ALR ++
Sbjct: 181 ALGNLGYAPSEAASAVAEAAAREPAAP-TAALIRAALRLLA 220


>gi|302533404|ref|ZP_07285746.1| Holliday junction DNA helicase RuvA [Streptomyces sp. C]
 gi|302442299|gb|EFL14115.1| Holliday junction DNA helicase RuvA [Streptomyces sp. C]
          Length = 209

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 54/212 (25%), Positives = 94/212 (44%), Gaps = 12/212 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L     +I+V GV   + C   T++ L ++G+   L     +R+D + L
Sbjct: 1   MIAFVSGQVAALAPTLAVIEVGGVGMAVQCTPNTIAGL-RVGEPARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG RVA  +L   T   L  +    ++K +  +PGI  K 
Sbjct: 60  YGFADDDERQVFELLQTASGVGPRVAQAMLGVHTPDALRVAFAAGDAKALTAVPGIGPKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++       +         ++   +          +     +AL+ LGY    A  A
Sbjct: 120 AQKLLL-----ELKGKLGAPGGVAVGAQRAPAAAGPAPWTEQLTAALIGLGYASRDAEEA 174

Query: 181 VVSVLKK------EKNIADDSQIIRLALRAIS 206
           V +V  +          A   Q++R AL++++
Sbjct: 175 VSAVTPQAEAAIASGGSAPVPQLLRAALQSLN 206


>gi|312143984|ref|YP_003995430.1| Holliday junction DNA helicase RuvA [Halanaerobium sp.
           'sapolanicus']
 gi|311904635|gb|ADQ15076.1| Holliday junction DNA helicase RuvA [Halanaerobium sp.
           'sapolanicus']
          Length = 200

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 96/205 (46%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +  L     +IDV GV Y           L  +GD   L++ T++R+D ++L
Sbjct: 1   MIGFLEGELIYLEAGQAIIDVNGVGYETELAG--FDDLPTVGDDIELYIYTYVREDALKL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           F F S  D++ F +L +V G+G +  + +++ + A   + +I+ +N  V+ +I GI  K 
Sbjct: 59  FAFPSRKDKELFEILITVNGIGPKAGLNIINTMPADRFISAIMQENELVLKKISGIGPKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+GK      +     S    +            + + AL  LGY   +   A
Sbjct: 119 AQRLILELQGKLEDFVYLKSGQKSSTTSKI-----ENEDRQDVVDALTALGYKISEINKA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +  ++      S+ IR  L  +
Sbjct: 174 LRKISFEDGIA--VSEKIRQVLSYL 196


>gi|332685820|ref|YP_004455594.1| holliday junction DNA helicase RuvA [Melissococcus plutonius ATCC
           35311]
 gi|332369829|dbj|BAK20785.1| holliday junction DNA helicase RuvA [Melissococcus plutonius ATCC
           35311]
          Length = 201

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 88/205 (42%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G I  +   Y++I+  G+ Y I          GK+     +++   +R+D   L
Sbjct: 1   MFEYIIGTITFINPYYLVIETNGIGYQILVS-NPYHYSGKLEKKVKIYLHQVIREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++Q F+ L  V G+G + A+ +L+      L+ +I  +N+  + + PG+  K 
Sbjct: 60  YGFREMEEKQLFLKLIGVSGIGPKSALAILALEDHGGLINAIADENASYLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   L        +  N+ +            A+ AL  LGY   +    
Sbjct: 120 AQQMVLDLKGKLDELEMTPTAVKAMTNQPKVKT---NQALNEALEALCALGYNDREIKRI 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +  K  +     Q +  AL+ I
Sbjct: 177 TPDL--KSMDSQSTDQYLSQALKLI 199


>gi|282897835|ref|ZP_06305832.1| DNA recombination protein, RuvA [Raphidiopsis brookii D9]
 gi|281197319|gb|EFA72218.1| DNA recombination protein, RuvA [Raphidiopsis brookii D9]
          Length = 214

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 56/213 (26%), Positives = 94/213 (44%), Gaps = 14/213 (6%)

Query: 1   MIGKIKGNIEGLYEDY-----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55
           MI  +KG + G+         + ++V G+ Y +Y P R  + L   GD   +F    +R+
Sbjct: 1   MISYLKGIVAGVQTGSPNRWILTLEVNGIGYDVYIPQRLANQLTNNGDVTHIFTHYQIRE 60

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           +   L+GF S  +R  F  L SV G+G  +A+ ++  +   ELV++II  N+ ++ Q PG
Sbjct: 61  ELPILYGFSSPAERDLFRHLLSVTGIGTAMAISLIDTLELPELVQAIISGNTIMLIQTPG 120

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           +  K A R+  ELKGK +                 A     P+        L  LGY   
Sbjct: 121 VGKKTAERLCLELKGKLVEWR-------KSAGFFVATGGPPPAILEEVQMTLFALGYTPH 173

Query: 176 QATTAVVSVLKK--EKNIADDSQIIRLALRAIS 206
           + + A+  + +       A     I+ A+  +S
Sbjct: 174 EVSHALHVISEDIGLPKNAYPEDWIKQAIAHLS 206


>gi|289434813|ref|YP_003464685.1| holliday junction DNA helicase RuvA [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289171057|emb|CBH27599.1| holliday junction DNA helicase RuvA [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 201

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 93/205 (45%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG I  +  +Y++++   + Y I       S     G    +F+  H+R+D I L
Sbjct: 1   MYDYIKGTITTITPEYIVVETGQIGYQI-ITGNPFSFQRLEGTDAQVFLYQHVREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L SV G+G + A+ +++      L+ +I  ++   + + P +  K 
Sbjct: 60  FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLITAIESEDDVYLTKFPSVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   L+ V   ++     E   +  +      A+ AL  LGY   +    
Sbjct: 120 ARQIILDLKGK---LADVATNEIIYNVPENDIVAGLSPALEEAVLALEALGYSTRELKKI 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  + K+          I+LALR +
Sbjct: 177 IPKLAKEV--DLTSDAYIKLALRLM 199


>gi|16800636|ref|NP_470904.1| Holliday junction DNA helicase RuvA [Listeria innocua Clip11262]
 gi|20455250|sp|Q92BI1|RUVA_LISIN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|16414055|emb|CAC96799.1| ruvA [Listeria innocua Clip11262]
 gi|313618794|gb|EFR90690.1| holliday junction DNA helicase RuvA [Listeria innocua FSL S4-378]
          Length = 201

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 95/205 (46%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG ++ +  +Y++++   + Y I       S     G    +F+  H+R+D I L
Sbjct: 1   MYDYIKGIVKTITPEYIVVETGQIGYQI-ITGNPFSFQRLEGTEAQVFLYQHVREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L SV G+G + A+ +++      L+ +I  ++   + + P +  K 
Sbjct: 60  FGFQSTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLITAIESEDDVYLTKFPSVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   L+ VV  ++     E   +  +      A+ AL  LGY   +    
Sbjct: 120 ARQIILDLKGK---LADVVASEIVYKAAENDIVTGLSPQLEEAVLALEALGYSTRELKKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  + K+          I+LALR +
Sbjct: 177 IPKMAKEN--DLTSDAYIKLALRLM 199


>gi|326407801|gb|ADZ64872.1| holliday junction DNA helicase RuvA [Lactococcus lactis subsp.
           lactis CV56]
          Length = 197

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 90/205 (43%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +  +    ++IDV G+ Y+I       +    +     ++V   +R+D   L
Sbjct: 1   MFEYLNGKLVKISPTNIVIDVAGIGYLISV-ANPYAWSALMNTEVKIYVHQVIREDAHSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+++ ++  F+ L SV G+G + A+ +++      L+ +I   + K + + PG+  K 
Sbjct: 60  YGFVNEAEKALFLRLISVSGIGPKSALAIIAAADNEGLITAIDNSDIKYLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK  +  +V    +           +       AI AL  LGY   +    
Sbjct: 120 AIQMVLDLAGKFDATGTVGISLLDAG-------PAGNLALEEAIEALQALGYKATELKKI 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              + ++        + I+ AL+ +
Sbjct: 173 EKKLAQETG--LTSEEYIKSALKLM 195


>gi|228476722|ref|ZP_04061391.1| holliday junction DNA helicase RuvA [Streptococcus salivarius
           SK126]
 gi|228251671|gb|EEK10768.1| holliday junction DNA helicase RuvA [Streptococcus salivarius
           SK126]
          Length = 196

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 88/205 (42%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++I+  G+ YI+       S   ++     +++   +R D   L
Sbjct: 1   MYDYIKGTLVKITAKYIVIEANGLGYIVTV-ANPYSFSDQMNQTIQVYLHQVIRDDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +++ F+ L SV G+G   A+ +++      LV ++   + K + + P I  K 
Sbjct: 60  FGFHTEDEKEVFLKLISVSGIGPTTALAIVAVDDNQGLVAAVDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK   L        +   K              A+ AL+ LGY   +    
Sbjct: 120 AQQMVLDLAGKFAEL-------PTETTKTTPSQPEGNHQLDEAMEALLALGYKAAELKK- 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +    E       Q I+ AL+ +
Sbjct: 172 IKAFF--EGTNETAEQYIKSALKML 194


>gi|306821186|ref|ZP_07454801.1| crossover junction ATP-dependent DNA helicase RuvA [Eubacterium
           yurii subsp. margaretiae ATCC 43715]
 gi|304550772|gb|EFM38748.1| crossover junction ATP-dependent DNA helicase RuvA [Eubacterium
           yurii subsp. margaretiae ATCC 43715]
          Length = 201

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 93/205 (45%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G +     ++V+++   + Y +     T   L ++    T++    +++D + L
Sbjct: 1   MIDYISGTVVQKGLNHVVVECNNIGYKLLVSQNTSYEL-ELEKISTVYTHLIVKEDDLSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF +  +R  F +L SV  +GA++A+ +LS  TAT++   I   +   + ++ G+  K 
Sbjct: 60  IGFSNMSERDMFRILISVSKIGAKIALSILSTYTATQIATFIKSADVVSLGKVSGLGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K        +         +  I          I AL  LG+   +A ++
Sbjct: 120 AERLVLELKDKVDIFVGSEE----IAKIRKDDIPQEDEKMSQVIEALTMLGFSNKEAVSS 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              V   +K+ AD   +I+ +L  +
Sbjct: 176 AEKVYALDKD-ADVQSLIKSSLALL 199


>gi|226306411|ref|YP_002766371.1| Holliday junction DNA helicase RuvA [Rhodococcus erythropolis PR4]
 gi|259495653|sp|C0ZZ47|RUVA_RHOE4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226185528|dbj|BAH33632.1| Holliday junction DNA helicase RuvA [Rhodococcus erythropolis PR4]
          Length = 199

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +I+  GV Y +     TL  L + G    LF    +R+D + L
Sbjct: 1   MIASVRGEVLDIALDHAVIEASGVGYRVNATPVTLGALHR-GSEARLFTTMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     +  F LLQ+V GVG R+AM  L+ +    L  ++   N   + ++PGI  + 
Sbjct: 60  YGFSDTESKDLFSLLQTVSGVGPRLAMATLAVLEPDALRRALSEGNLTALTRVPGIGKRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K  ++++        V           S     + AL  LG+   QA  A
Sbjct: 120 AERMVVELRDKVDAVATTAGAASGAV--------VGSSIRDQIVEALEGLGFPIKQAEQA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             SVL +    A  S  +R AL  +
Sbjct: 172 TDSVLAESPE-ATTSVALRSALSLL 195


>gi|116074623|ref|ZP_01471884.1| putative holliday junction DNA helicase RuvA [Synechococcus sp.
           RS9916]
 gi|116067845|gb|EAU73598.1| putative holliday junction DNA helicase RuvA [Synechococcus sp.
           RS9916]
          Length = 224

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 52/213 (24%), Positives = 91/213 (42%), Gaps = 8/213 (3%)

Query: 1   MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG ++G     +       ++I   GV Y +       + L +    CT ++    R+D
Sbjct: 9   MIGWLQGERIDSWVQGGRQGLVIACGGVGYEVQFTSGHRTRL-EAERQCTAWIHQVQRED 67

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GFL   +R  F  L SV GVG ++A+ +L    AT LV++I+  + + + Q  G+
Sbjct: 68  GCMLYGFLEKRERDLFRTLISVNGVGPQMALALLESCGATALVDAIVEGDLRQLTQAQGV 127

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS-MPSFAINAISALVNLGYGQD 175
             + A R+  EL+ +  S  +     +S V++                   L  LGY   
Sbjct: 128 GKRTAERLAVELRDRLGSWRAPADDGLSLVDRSDLKALPLQGDPLQELQQTLEALGYEDL 187

Query: 176 QATTAVVSV--LKKEKNIADDSQIIRLALRAIS 206
           +   A+ +V    +     D    +R +LR +S
Sbjct: 188 EIRRAMRAVATAAEPPAAGDHDAWLRESLRWLS 220


>gi|302541121|ref|ZP_07293463.1| Holliday junction DNA helicase RuvA [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302458739|gb|EFL21832.1| Holliday junction DNA helicase RuvA [Streptomyces himastatinicus
           ATCC 53653]
          Length = 206

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 60/212 (28%), Positives = 101/212 (47%), Gaps = 15/212 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L  +  +I+V GV   + C   TLS L +IG+   L     +R+D + L
Sbjct: 1   MIAFVSGPVAALAPNTAVIEVGGVGMALQCTPGTLSGL-RIGEAARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+      L  ++   + K +  +PGI  K 
Sbjct: 60  YGFADDDERQVFELLQTASGVGPRLAQAMLAVHAPDALRLAVSTGDEKALTAVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK +          +        A   +   ++    +ALV LGY   +A  A
Sbjct: 120 AQKLLLELKDRL--------GEPVGTTVPAARPPAAAGWSDQLHTALVGLGYATREADEA 171

Query: 181 VVSVLKK------EKNIADDSQIIRLALRAIS 206
           V +V  +      E  +   +Q++R AL+ ++
Sbjct: 172 VSAVTPQAEAALAEGGMPQVAQLLRAALQTLN 203


>gi|78044333|ref|YP_360355.1| Holliday junction DNA helicase RuvA [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|90134706|sp|Q3ABX9|RUVA_CARHZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|77996448|gb|ABB15347.1| Holliday junction DNA helicase RuvA [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 195

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/206 (24%), Positives = 95/206 (46%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +     D V++DV G+ + +    R L  L  +     ++    +R+D   L
Sbjct: 1   MIAVLKGKVLDKTLDSVVVDVNGIGFKVAVLPRELGSL-NLNSEVVMYTSLQVREDGWFL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  +  R++F LL SV G+G + A+ +L+  T  +L   I  ++ K + ++PG+  K 
Sbjct: 60  YGFSDEETRKFFDLLLSVSGIGPKAALAILNEFTPEKLNWVIANKDEKALTKVPGVGKKN 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+  ELK K            +     +  + +      +    L++LG    +A   
Sbjct: 120 AQRLFLELKDKIGY---------TSFTSNEESVENFQDLWGDVYKGLLSLGLSAAEAREI 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  + KK  ++    + I LALR ++
Sbjct: 171 LGKIDKK--SVKTPEEGIALALRFLN 194


>gi|260910076|ref|ZP_05916757.1| crossover junction endoribonuclease subunit A [Prevotella sp. oral
           taxon 472 str. F0295]
 gi|260635788|gb|EEX53797.1| crossover junction endoribonuclease subunit A [Prevotella sp. oral
           taxon 472 str. F0295]
          Length = 205

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 94/208 (45%), Gaps = 7/208 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM---RQDQ 57
           MI  IKG++  L     +I+  GV Y +   + T S +           E  +   R D 
Sbjct: 1   MIEYIKGDLAELTPAMAVIEAAGVGYALNISLNTYSAIQGKDKLKLFVHEALVTGGRDDS 60

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
             L+GF +  +R+ + LL SV GVGA  A  +LS ++ +EL   I   + K++  + GI 
Sbjct: 61  YTLYGFATRQERELYRLLISVSGVGANSARMILSGMSPSELCNVIAAGDDKMLKTVKGIG 120

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            K A RI+ +LK K     +        V           +    A+ AL  LG+    +
Sbjct: 121 AKTAQRIIVDLKDKI---MTSGVAQELSVPTNANANAMNAAVKDEAVGALTMLGFAPATS 177

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
              VV +LK++ ++    Q+++ AL+ I
Sbjct: 178 AKVVVEILKEQPDLP-VEQVVKAALKMI 204


>gi|78184871|ref|YP_377306.1| Holliday junction DNA helicase RuvA [Synechococcus sp. CC9902]
 gi|123770922|sp|Q3AVK0|RUVA_SYNS9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|78169165|gb|ABB26262.1| Holliday junction DNA helicase subunit RuvA [Synechococcus sp.
           CC9902]
          Length = 214

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 87/214 (40%), Gaps = 12/214 (5%)

Query: 1   MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG ++G     +       VL+   GV Y +    R    L +     TL++    R+D
Sbjct: 1   MIGWLQGRHMECWTQGNRSGVLLVCAGVGYEVQLTSRHQKQL-QPDSELTLWIHQVQRED 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              LFGF S  +R  F LL  V GVG +  + +L      ELV +I   + K + Q  GI
Sbjct: 60  GSSLFGFPSRQERDLFRLLIGVNGVGPQAGLALLHECKPQELVAAISGGDLKRLCQAQGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             + A R+  +L+    +   +  Q              +P    +  + L++LGY + +
Sbjct: 120 GKRTAERLAVDLRTPIAAFGGLEPQPSLVEG---LASEQIPEAGEDVEATLISLGYDELE 176

Query: 177 ATTAVVSVLKKE----KNIADDSQIIRLALRAIS 206
              A+ ++         +  D    +R  L+ +S
Sbjct: 177 IRRAIRAIADGASGVPPSGTDQDGWLRSCLQWLS 210


>gi|116070445|ref|ZP_01467714.1| DNA recombination protein, RuvA [Synechococcus sp. BL107]
 gi|116065850|gb|EAU71607.1| DNA recombination protein, RuvA [Synechococcus sp. BL107]
          Length = 214

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 50/214 (23%), Positives = 86/214 (40%), Gaps = 12/214 (5%)

Query: 1   MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG ++G     +       VL+   GV Y +    R    L +     TL++    R+D
Sbjct: 1   MIGWLQGRHMECWTQGNRSGVLLVCAGVGYEVQLTSRHQKQL-QPDSELTLWIHQVQRED 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              LFGF    +R  F LL  V GVG +  + +L      ELV +I   + K + Q  GI
Sbjct: 60  GSSLFGFPCRQERDLFRLLIGVNGVGPQAGLALLHECKPHELVAAISGGDLKRLCQAQGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             + A R+  +L+    +   +  Q              +P    +  + L++LGY + +
Sbjct: 120 GKRTAERLAVDLRTPIAAFGGLDPQPSLVEG---LASEQIPEAGEDVEATLISLGYDELE 176

Query: 177 ATTAVVSVLKKE----KNIADDSQIIRLALRAIS 206
              A+ ++         +  D    +R  L+ +S
Sbjct: 177 IRRAIRAIADGASGVPPSGTDQDGWLRSCLQWLS 210


>gi|332188826|ref|ZP_08390535.1| holliday junction DNA helicase RuvA [Sphingomonas sp. S17]
 gi|332011136|gb|EGI53232.1| holliday junction DNA helicase RuvA [Sphingomonas sp. S17]
          Length = 199

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 109/206 (52%), Gaps = 8/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG ++    D+ +IDV GV Y++    RTLS +G +G+   L  E  + +D IRL
Sbjct: 1   MIAHLKGRLDSTGIDHAVIDVGGVGYLVGASARTLSVIGSVGEAAMLHTEMLVSEDSIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF S  +R WF LL  VQGVG+RVA+ +LS +   +L+ +I   +  ++A+  G+  K+
Sbjct: 61  VGFASADERDWFRLLTGVQGVGSRVALAILSALEPADLMRAIASGDKAMVARANGVGPKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K   +               A   +        +SAL+NLG+   +A+ A
Sbjct: 121 AQRIVMELKDKVGGIVLAPGSGGGAAATVGAGADA--------VSALLNLGFRPAEASAA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V S  ++    A    ++RLALR  +
Sbjct: 173 VASAEEELGASASLDALVRLALRKAA 198


>gi|29839888|ref|NP_828994.1| Holliday junction DNA helicase motor protein [Chlamydophila caviae
           GPIC]
 gi|33301629|sp|Q824M5|RUVA_CHLCV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|29834235|gb|AAP04872.1| Holliday junction DNA helicase RuvA [Chlamydophila caviae GPIC]
          Length = 207

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 99/205 (48%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           M   I+G +  +    ++I+ QG+ + I+ P R L  L G++     ++  T +R+ +  
Sbjct: 1   MYDYIRGILTYMSSGTLVIECQGLGFNIFAPDRWLIELSGQLHREVVVYTYTVVRETEHV 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF S  +R+ F +L S  GVG +  + +L+  + ++L      ++ + IA +PGI  K
Sbjct: 61  LYGFSSRRERECFRMLISFSGVGPKTGLAILNTFSLSKLCSIARAEDVRAIASVPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A ++M +LK K   L  +  + ++            PS     I AL  LGY +  A  
Sbjct: 121 TAEKLMVDLKQKLPDLLPLDSKAIASW------ESVKPSCMDEGIQALAALGYSKPSAER 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +   + +    A  ++I+ +AL+ 
Sbjct: 175 MIAEAMSELPENASLAEILPIALKK 199


>gi|15806292|ref|NP_294998.1| Holliday junction DNA helicase RuvA [Deinococcus radiodurans R1]
 gi|20455276|sp|Q9RUV7|RUVA_DEIRA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|6459015|gb|AAF10840.1|AE001974_5 Holliday junction binding protein [Deinococcus radiodurans R1]
          Length = 201

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 91/205 (44%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  + E   ++   GV Y + CP   L+ L K G+         +R+D   L
Sbjct: 1   MIAYLSGVVREVREGSAVVVAGGVGYEVQCPAGMLARL-KPGEAAEFSTRFIVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF      + F LL SV GVG ++ + +LS +  + L   +I  + K+++ + G+  K 
Sbjct: 60  FGFPDADHLKLFDLLTSVSGVGPKLGLALLSAMPVSALAAGLIGGDVKLLSSVSGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+  EL  K       +    S     +       +   +A+ AL+ LG+ + Q   A
Sbjct: 120 AERLALELSSKVPE---HLAAAASGAAGGKRPARVSSTAGHDAVDALLALGFREAQVRAA 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +L  +   A    +IR AL  +
Sbjct: 177 VAELLGADPE-ASADTLIRKALGRL 200


>gi|42523918|ref|NP_969298.1| Holliday junction DNA helicase RuvA [Bdellovibrio bacteriovorus
           HD100]
 gi|81616890|sp|Q6MKB7|RUVA_BDEBA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|39576125|emb|CAE80291.1| Holliday junction DNA helicase RuvA [Bdellovibrio bacteriovorus
           HD100]
          Length = 196

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 16/207 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKI-GDFCTLFVETHMRQDQIR 59
           MIG ++G I  +  D  LIDV GV Y I+    TL  L  + G+   +++ TH+R+D ++
Sbjct: 1   MIGYLRGKIIEVMNDSALIDVSGVGYEIHASSNTLGDLQALLGNDIIVWIHTHVREDALQ 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF    ++  F+ L  V GVG ++A+ +LS     ++ E I   N+K ++ +P +  K
Sbjct: 61  LFGFHDKEEKNLFLSLLKVNGVGPKMALSILSGGRPAQIHEMIEAGNAKALSGLPKVGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +I+  LKGK +S+                   +         SAL+NLGY     + 
Sbjct: 121 TAEQIILTLKGKLVSIEEG-----------GVVAKAKSVAHTQITSALLNLGYK----SQ 165

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
            V   +            IR   + +S
Sbjct: 166 LVDQFVSSLPADIAVEDGIRKGFQTLS 192


>gi|291165807|gb|EFE27855.1| holliday junction DNA helicase RuvA [Filifactor alocis ATCC 35896]
          Length = 198

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 96/206 (46%), Gaps = 10/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G IE L  D +L+   GV Y I     T+    K      L+ +  +R+D I L
Sbjct: 1   MIGLLYGEIEELSLDSILLVCSGVGYEIQVSQNTMEH-CKQHSNIRLYTKMIVREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF    +++ F  L SV  +G +V + +LS     ++   I+  N + ++++ G+  K 
Sbjct: 60  IGFFEKSEKELFEQLTSVSKIGPKVGLSILSTYQVDQIKSYIVTANIEKLSKVSGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K               N        +     +AI ALV+LG+ ++++  A
Sbjct: 120 AERIVLELKDKISHFE--------IDNDAIEIASPINQTEDDAIEALVSLGFSKNESYDA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  V K++       ++I LAL  +S
Sbjct: 172 VQEV-KQQYTAQSLDELIPLALSKLS 196


>gi|322517658|ref|ZP_08070523.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           vestibularis ATCC 49124]
 gi|322123735|gb|EFX95320.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           vestibularis ATCC 49124]
          Length = 196

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++I+  G+ YII       S   ++     +++   +R D   L
Sbjct: 1   MYDYIKGTLVKITAKYIVIEANGLGYIITV-ANPYSFSDQLNQTIQVYLHQVIRDDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +++ F+ L SV G+G   A+ +++      LV ++   + K + + P I  K 
Sbjct: 60  FGFHTEDEKEVFLKLISVSGIGPTTALAIVAVDDNQGLVAAVDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK   L        +   K              A+ AL+ LGY   +    
Sbjct: 120 AQQMVLDLAGKFAEL-------PTETTKTTPSQPEGNHQLDEAMEALLALGYKAAELKKI 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              V   E       Q I+ AL+ +
Sbjct: 173 --KVFF-EGTNETAEQYIKSALKML 194


>gi|213966124|ref|ZP_03394311.1| holliday junction DNA helicase RuvA [Corynebacterium amycolatum
           SK46]
 gi|213951222|gb|EEB62617.1| holliday junction DNA helicase RuvA [Corynebacterium amycolatum
           SK46]
          Length = 206

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 100/205 (48%), Gaps = 2/205 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  L  DY +I+  GV +++    R  S L +  +   +     +R+D I L
Sbjct: 1   MIASLRGEVIDLGADYCVIECGGVGHLVTITGRLASQLVR-HEQTFMLTTMAVREDAITL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F LL++V  VG +VAM VLS ++  E+  ++  +N+K +    G+  ++
Sbjct: 60  FGFANSQEREMFALLRTVSTVGPKVAMSVLSVLSPAEIANAVASKNAKALQAANGVGKRL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K    +              A    + +     + ALV LG+ +  A  A
Sbjct: 120 AERLLVELKDKVEVFADRAVSQPEEAASGAAPGIVLKADLDQVVGALVGLGFPEADANEA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             +V++ +    D    ++ AL+ +
Sbjct: 180 AETVVRIDP-TLDTPMALKAALKTL 203


>gi|23010264|ref|ZP_00051013.1| COG0632: Holliday junction resolvasome, DNA-binding subunit
           [Magnetospirillum magnetotacticum MS-1]
          Length = 182

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 70/166 (42%), Positives = 105/166 (63%), Gaps = 2/166 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++   ED+V++DV GV Y+++C  RTL  L K G+   L +ETH+R+D IRL
Sbjct: 1   MIGKLKGLVDSYGEDFVILDVNGVGYVVHCSARTLQRLPKPGEATDLAIETHVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF SD +R+WF LLQ+VQGVG RVA+GVLS +    L  +I   +   IA+ PG+  ++
Sbjct: 61  YGFRSDAEREWFRLLQTVQGVGTRVALGVLSVLEPEALATAIATGDKGAIARAPGVGPRL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166
           A+R++ ELK KA + + +    ++     +      P    +AISA
Sbjct: 121 AARLVAELKDKAPAFAPIDPALVALTGAVEDRTAPQP--VADAISA 164


>gi|154149661|ref|YP_001403279.1| Holliday junction DNA helicase RuvA [Candidatus Methanoregula
           boonei 6A8]
 gi|153998213|gb|ABS54636.1| Holliday junction DNA helicase RuvA [Methanoregula boonei 6A8]
          Length = 201

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 101/205 (49%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G      + +V++DV G+ Y ++ P   +  +   G    L     +R+D I L
Sbjct: 1   MIAYLEGTPAATGDRWVVLDVNGIGYRVHVPEPEVREIAGAGTKVKLHTYMAVREDAITL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + + + F ++  V G+G ++A+ +LS+I+  + V +I+  + K + +I GI  K 
Sbjct: 61  YGFLHESELELFTVIIGVSGIGPQIALNILSQISLEDFVLAILSGDEKSLTRISGIGPKG 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K   +   +    +             +   +A SALV+LG+ +  +  A
Sbjct: 121 AKRLILELRDKMKKVQDAMTHTPAG---------RQDATLRDAASALVSLGFAEAASYDA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V S  +         +I++ ALR +
Sbjct: 172 VASAARGLA-APTVQEIVKAALRLL 195


>gi|296129641|ref|YP_003636891.1| Holliday junction DNA helicase RuvA [Cellulomonas flavigena DSM
           20109]
 gi|296021456|gb|ADG74692.1| Holliday junction DNA helicase RuvA [Cellulomonas flavigena DSM
           20109]
          Length = 202

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 55/208 (26%), Positives = 92/208 (44%), Gaps = 14/208 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +  D  +++V GV  ++     TL+ L ++G    L     +R+D + L
Sbjct: 1   MIASVHGTVLAVRLDSAVLEVGGVGLLVQATPATLAGL-RVGQPGRLSTSLVVREDALTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF  D +R  F  +Q+V GVG R+A+ +L+  T   L  ++  ++   + ++PGI  K 
Sbjct: 60  FGFADDDERDVFETVQTVSGVGPRLALAMLAVHTPDGLRRAVAQEDIAALMRVPGIGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL  +            +                   + ALV LG+    A  A
Sbjct: 120 AQRIVLELGERLG----------APDPTGGTPAAPSADHREQVVEALVGLGWPLRAAQDA 169

Query: 181 VVSVLKKEK---NIADDSQIIRLALRAI 205
           V SVL          +   ++R ALR +
Sbjct: 170 VASVLDGSAVPVGAGEVPGVLRAALRTL 197


>gi|124023288|ref|YP_001017595.1| Holliday junction DNA helicase RuvA [Prochlorococcus marinus str.
           MIT 9303]
 gi|123963574|gb|ABM78330.1| putative holliday junction DNA helicase RuvA [Prochlorococcus
           marinus str. MIT 9303]
          Length = 233

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 86/221 (38%), Gaps = 15/221 (6%)

Query: 1   MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG ++G     ++      V++   GV Y +    R LS +    +   L++    R D
Sbjct: 9   MIGWLQGQKVEAWQQGTRQGVVLACAGVGYEVQIAPRHLSEMEHGQNTFILWIHQVQRDD 68

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              LFGF    +R  F  L  V GVG ++A+ +L      ELVE+I+  + + + Q  G+
Sbjct: 69  GSSLFGFPERRERDMFRTLIGVSGVGPQMALALLEECQTGELVEAIVQGDLRKLCQAQGV 128

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             + A R+  EL+ K    S          N          S        L  LGY   +
Sbjct: 129 GKRTAERLAVELRTKLAEFSCRDPGMSLVDNGVIDSHQLKDSSLHELQITLGGLGYEDLE 188

Query: 177 ATTAVVSVL-----------KKEKNIADDSQIIRLALRAIS 206
              A+ +V            +    I D    +R +LR +S
Sbjct: 189 IRRAIRAVASGAAIGARDMPESVPAIDDTDAWLRASLRWLS 229


>gi|332523205|ref|ZP_08399457.1| Holliday junction DNA helicase RuvA [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332314469|gb|EGJ27454.1| Holliday junction DNA helicase RuvA [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 197

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 93/205 (45%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG ++ +   Y++++  G+ YIIY      S    +    T+++   +R+D   L
Sbjct: 1   MFDYIKGKLKKITAKYIVVEANGLGYIIYV-ANPYSFTDSVNQNVTIYLHQVIREDAHIL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +D ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTDDEKDVFLKLISVSGIGPMTALAIVAVDDNQGLVRAIDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK +  S   QQ             +       AI AL+ LGY   +    
Sbjct: 120 AQQMILDLAGKFVDSSEPSQQQSQA-------KRNSNQQLDEAIEALLALGYKATELKK- 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +    E       Q I+LAL+ +
Sbjct: 172 IRAFF--EGTDETAEQYIKLALKML 194


>gi|225869418|ref|YP_002745366.1| Holliday junction DNA helicase RuvA [Streptococcus equi subsp.
           zooepidemicus]
 gi|259495656|sp|C0MGC2|RUVA_STRS7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|225702694|emb|CAX00805.1| Holliday junction DNA helicase RuvA [Streptococcus equi subsp.
           zooepidemicus]
          Length = 198

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 89/205 (43%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ Y+I       S    +    T+++   +R+D   L
Sbjct: 1   MYDYIKGQLTKITAKYIVVEANGLGYMITV-ANPYSFTDCVNQQVTIYLHQVIREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S+ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHSEEEKDVFLKLISVSGIGPTTALAIVAVDDNRGLVNAIDNSDIKYLMRFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK       V+      +K              A+ AL+ LGY   +    
Sbjct: 120 AQQMVLDLAGKF------VEAPKEESSKPPKAKQQGNEQLDEAVEALLALGYKATELKK- 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +    E       Q I+ AL+ +
Sbjct: 173 IRAFF--EGTSETAEQYIKSALKML 195


>gi|313633143|gb|EFS00032.1| holliday junction DNA helicase RuvA [Listeria seeligeri FSL N1-067]
 gi|313637717|gb|EFS03086.1| holliday junction DNA helicase RuvA [Listeria seeligeri FSL S4-171]
          Length = 201

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 93/205 (45%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG I  +  +Y++++   + Y I       S     G    +F+  H+R+D I L
Sbjct: 1   MYDYIKGIITTITPEYIVVETGQIGYQI-ITGNPFSFQRLEGTDAQVFLYQHVREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L SV G+G + A+ +++      L+ +I  ++   + + P +  K 
Sbjct: 60  FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLITAIESEDDVYLTKFPSVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   L+ V   ++     E   +  +      A+ AL  LGY   +    
Sbjct: 120 ARQIILDLKGK---LADVATNEIIYNVPENDIVAGLSPALEEAVLALEALGYSTRELKKI 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  + K+          I+LALR +
Sbjct: 177 IPKLAKEA--DLTSDAYIKLALRLM 199


>gi|254474829|ref|ZP_05088215.1| holliday junction ATP-dependent DNA helicase RuvA [Ruegeria sp.
           R11]
 gi|214029072|gb|EEB69907.1| holliday junction ATP-dependent DNA helicase RuvA [Ruegeria sp.
           R11]
          Length = 229

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 116/227 (51%), Gaps = 22/227 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +E    D+VLIDV+GV YI+YC  RT++ L  +G+   L+ +  +R+D ++L
Sbjct: 1   MIGKLTGRLEYRSSDHVLIDVRGVGYIVYCSERTMAALPGVGEAVALYTDMVVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S ++++W  LL SVQGVGA+V++ +L  +    +  +I L +   +    G+  K 
Sbjct: 61  YGFPSLVEKEWHRLLTSVQGVGAKVSLAILGALGPDGVSRAIALGDWAAVKAAKGVGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI------------------- 161
           A RI+ +LK KA  + ++       ++     +                           
Sbjct: 121 AQRIVLDLKDKAPGVMAMGGTVADAMDGPGLDVVEPADPVEPAKKPRKAPPKKPSGAAAA 180

Query: 162 --NAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
              A+SAL NLGYG   A  AV          A+++++IR ALR ++
Sbjct: 181 SAGALSALGNLGYGPSDAAAAVAEAAATYPE-ANEAELIRAALRLLA 226


>gi|269126344|ref|YP_003299714.1| Holliday junction DNA helicase RuvA [Thermomonospora curvata DSM
           43183]
 gi|268311302|gb|ACY97676.1| Holliday junction DNA helicase RuvA [Thermomonospora curvata DSM
           43183]
          Length = 202

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 10/208 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +     D+ ++DV GV   + C   TL+ L ++G+  T+     +R+D + L
Sbjct: 1   MIAFVSGKVAAAGPDHAVVDVGGVGLTLQCTPATLAGL-RVGEQVTVPTSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF  D +R  F LLQ+  GVG R+A+ +L+  +   L  ++   +   + ++PGI  K 
Sbjct: 60  FGFADDDERAVFELLQTASGVGPRLALAMLAVHSPNALRRAVAAGDVAALTKVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK +                           +     + L+NLG+   +A  A
Sbjct: 120 AQRIVLELKDRL-------GAPSGEEEAAAPAPARAEPWRTQVQTGLINLGWSAREAEAA 172

Query: 181 VVSVLK--KEKNIADDSQIIRLALRAIS 206
           V +V        +   S +++ ALR +S
Sbjct: 173 VEAVAAELDGGPLPPVSALLKSALRKLS 200


>gi|239917790|ref|YP_002957348.1| Holliday junction DNA helicase subunit RuvA [Micrococcus luteus
           NCTC 2665]
 gi|259495650|sp|C5CCI2|RUVA_MICLC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|239838997|gb|ACS30794.1| Holliday junction DNA helicase subunit RuvA [Micrococcus luteus
           NCTC 2665]
          Length = 214

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/206 (23%), Positives = 94/206 (45%), Gaps = 7/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +  D  +I V G+        +TLS L + G    +     +++D + L
Sbjct: 1   MIASLSGTVEHVALDRAVIAVGGLGVQFSATPQTLSTLHE-GRPGAVQTHLVVKEDALTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F +L +  GVG R+A+ +LS      +  ++  ++ K + ++PGI  K+
Sbjct: 60  YGFADRDEREVFEVLITANGVGPRLALAILSVHHPETVRRAVTEEDEKTLTRVPGIGPKM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ EL G+       V    +  +           +  + + A+  LG+ + +A  A
Sbjct: 120 ARKIIVELSGRLAPTGEPVPGAEAEASD---EPAVETVWHADVVQAMAGLGWSEKEALKA 176

Query: 181 VV---SVLKKEKNIADDSQIIRLALR 203
           V    +   +     D + ++R  LR
Sbjct: 177 VEATVAARPELDEGRDVAALLRATLR 202


>gi|254464647|ref|ZP_05078058.1| Holliday junction DNA helicase RuvA [Rhodobacterales bacterium Y4I]
 gi|206685555|gb|EDZ46037.1| Holliday junction DNA helicase RuvA [Rhodobacterales bacterium Y4I]
          Length = 229

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 118/227 (51%), Gaps = 22/227 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++   +D+VLIDV+GV YI+YC  RT++ L   G+   L+ +  +R+D ++L
Sbjct: 1   MIGKLTGRLDYRAQDHVLIDVRGVGYIVYCSDRTMAALPGTGEPVALYTDLVVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S ++++W  LL SVQGVGA+V++ +L  +    +  +I L +   +    G+  K 
Sbjct: 61  YGFPSLVEKEWHRLLTSVQGVGAKVSLAILGALGPDGVSRAIALGDWATVKAAKGVGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAH---------------------ICSMPSF 159
           A RI+ +LK KA  + ++    +  ++                               + 
Sbjct: 121 AQRIVLDLKDKAPGVMAMGGTVVDAMDGPGLELVEAADPAPAAKPARKALPKKPSGAAAA 180

Query: 160 AINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           +  A+SAL NLGYG   A  AV        + AD+ ++IR ALR ++
Sbjct: 181 SAGALSALGNLGYGPSDAAAAVAEAAATWPD-ADEPELIRAALRLLA 226


>gi|313623659|gb|EFR93815.1| holliday junction DNA helicase RuvA [Listeria innocua FSL J1-023]
          Length = 201

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG ++ +  +Y++++   + Y I       S     G    +F+  H+R+D I L
Sbjct: 1   MYDYIKGIVKTITPEYIVVETGQIGYQI-ITGNPFSFQRLEGTEAQVFLYQHVREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L SV G+G + A+ +++      L+ +I  ++   + + P +  K 
Sbjct: 60  FGFQSTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLITAIESEDDVYLTKFPSVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   L+ VV  ++     E   +  +      A+ AL  LGY   +    
Sbjct: 120 ARQIILDLKGK---LADVVASEIVYKAAENDIVTGLSPQLEEAVLALEALGYSTRELKKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  + K+          I+LAL+ +
Sbjct: 177 IPKMAKEN--DLTSDAYIKLALQLM 199


>gi|6685961|sp|Q9ZNJ6|RUVA_CLOHI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|3892649|dbj|BAA34545.1| ruvA [Clostridium histolyticum]
          Length = 197

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 103/205 (50%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG   G+ ++Y++I+   + Y I+    T++ +  IG+   L++   +R+D I L
Sbjct: 1   MYEYIKGTYMGINKEYIVIENGDIGYKIHSSGYTIANMPNIGEHIMLYLTQIVREDFIGL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  + + F  L +V G+GA+ ++ +LS      L  +I+L++ K++ + PGI  K 
Sbjct: 61  YGFGSKEELELFNKLLTVNGIGAKASLSLLSITNVENLKRAIVLEDEKLLIKAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K              +  +   I         A  AL++LGY + +   A
Sbjct: 121 AQRIILELKDKLD------VNLDEGIQTDSNDIKVSSKILEEAKEALMSLGYSEKECEKA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +V +KE        II+ +L+ +
Sbjct: 175 LKNVEEKE----SLEIIIKESLKFL 195


>gi|315923964|ref|ZP_07920192.1| crossover junction ATP-dependent DNA helicase RuvA
           [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622804|gb|EFV02757.1| crossover junction ATP-dependent DNA helicase RuvA
           [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 231

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 97/192 (50%), Gaps = 2/192 (1%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
              IKG +     D V+I+  G+ Y ++  + T++ L  + +   L +    R+D + L+
Sbjct: 29  FEYIKGELSAQSADTVVIENNGIGYRVHVSLTTIAELPPLHEQLKLLLYPAFREDDVTLY 88

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF +  +R  F  L S+ G+G + AMG+LS+    EL+  I+  ++K IA+ PGI  K A
Sbjct: 89  GFATAEERGLFGTLISISGIGPKAAMGLLSQFAEPELIRHIVNADAKAIARAPGIGKKTA 148

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
            RI+ ELK +   +  V ++  + V    A + +  +     ++ L+ LGY   +A+  V
Sbjct: 149 ERIILELKDRYKDV--VAEEGDAPVGGATAKLRAADNLTNEGVNGLLGLGYTYAEASDLV 206

Query: 182 VSVLKKEKNIAD 193
              L  +  I +
Sbjct: 207 ARALAPDMTIEE 218


>gi|331002346|ref|ZP_08325864.1| Holliday junction DNA helicase RuvA [Lachnospiraceae oral taxon 107
           str. F0167]
 gi|330410162|gb|EGG89596.1| Holliday junction DNA helicase RuvA [Lachnospiraceae oral taxon 107
           str. F0167]
          Length = 196

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 49/206 (23%), Positives = 96/206 (46%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +     D ++++  G+ Y ++   R +  + K  D   ++    +  D   L
Sbjct: 1   MIAYIKGIVTEKNTDSIIVECSGLGYEVFTCGRDIQSVSKT-DEILIYTYLRISDDAHTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  D   F  L  + GVG + A+ ++S + + +L  +I+  + K I+   GI  KI
Sbjct: 60  YGFLNKDDLLMFKKLLGISGVGPKAALSIMSTLGSFDLKMAIVSDDYKAISAAQGIGQKI 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K          D+  +        +  +       AL++LGY   +A   
Sbjct: 120 AKRIILDLKEKV---------DLGSILVSDIDNTADSTVQTETAQALISLGYSSSEAYKV 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + S+  K+ +      ++++AL+ ++
Sbjct: 171 LKSMDIKDSDK--VEDVLKIALKKMA 194


>gi|325283106|ref|YP_004255647.1| Holliday junction ATP-dependent DNA helicase ruvA [Deinococcus
           proteolyticus MRP]
 gi|324314915|gb|ADY26030.1| Holliday junction ATP-dependent DNA helicase ruvA [Deinococcus
           proteolyticus MRP]
          Length = 196

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 93/205 (45%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +     ++   G+ Y ++CP  TL+ L K G+   L     +R+D   L
Sbjct: 1   MIVYLSGTVREVRTSSAVLQTGGLGYEVFCPQSTLARL-KPGEAAELHTRFVVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF      Q F L+  V GVG ++ + +LS +  + L + I+  ++K+++ + G+  K 
Sbjct: 60  FGFHDTDSAQLFDLVTGVSGVGPKLGLALLSAMPVSTLAQGILDGDAKLLSSVSGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E++ K  +  +        V    A          +AI AL+ LG+ + Q  T 
Sbjct: 120 AERLILEVQSKVPAHLAAPSGGSKPVTVTTAGA--------DAIDALMALGFREAQVRTV 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +L           +IR  L  +
Sbjct: 172 VAGLLADNPE-QSADTLIRKGLGQL 195


>gi|261878755|ref|ZP_06005182.1| crossover junction endoribonuclease subunit A [Prevotella bergensis
           DSM 17361]
 gi|270334761|gb|EFA45547.1| crossover junction endoribonuclease subunit A [Prevotella bergensis
           DSM 17361]
          Length = 206

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 54/209 (25%), Positives = 101/209 (48%), Gaps = 8/209 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMR----QD 56
           MI  I+G +  L     +++  G+ Y +   + T   + +      L+V   ++     D
Sbjct: 1   MIEYIQGELTELTPALAVVETGGIGYALSISLNTYDDI-QGKKAVKLYVHEAIQTGGRDD 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L+GF S  +R+ + +L +V GVGA  A  +LS +T  EL  +I   N K+I  + GI
Sbjct: 60  NYTLYGFASKQERELYRMLITVSGVGANTARTMLSSLTPKELCNAIANGNEKLIKSVKGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
            +K A R++ +L+ K   +SS + + +     +        +    A+SAL  LG+    
Sbjct: 120 GLKTAQRVIVDLRDKI--VSSGIAEVLHAGTPDTKVSAVNTAVKDEAVSALTMLGFSPAP 177

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           AT  V ++L ++ ++     +++ AL+ I
Sbjct: 178 ATKTVTAILTEQPDMV-VEMVVKEALKRI 205


>gi|270307810|ref|YP_003329868.1| Holliday junction DNA helicase [Dehalococcoides sp. VS]
 gi|270153702|gb|ACZ61540.1| Holliday junction DNA helicase [Dehalococcoides sp. VS]
          Length = 194

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 58/204 (28%), Positives = 102/204 (50%), Gaps = 14/204 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E   +D+ +I+V GV +  Y P  + + +G++G    +F   H+R+D + L
Sbjct: 1   MISSLSGILEASGKDWAVINVSGVGFRTYMPASSPALIGELGQRVRVFTHLHVREDALNL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +   F  L  V G+G ++ + +LS + A  L  +II  N+++++ IPGI  K 
Sbjct: 61  FGFGTAEELSLFETLIDVSGIGPKLGLAMLSAMNAEALASAIISGNTELLSTIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ ELK K               + E   +  +     + ++ L  LGY   +A  A
Sbjct: 121 ASRIVLELKDKIAK------------SWEAGVLSQVTEANSDILATLTALGYSAGEAAKA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           + S+  ++       + I+LAL  
Sbjct: 169 IASL--EDITGLPLEERIKLALNY 190


>gi|319400968|gb|EFV89187.1| holliday junction DNA helicase RuvA [Staphylococcus epidermidis
           FRI909]
          Length = 200

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 99/205 (48%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  L+  +V+++  G+ Y I  P  +      +     ++    +R+D   L
Sbjct: 1   MYAYIKGTLSQLFPTHVVVETCGIGYEIQTP-NSYRFQKYLEKEVQIYTSLIVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+++ +++ F+ L  V G+G + A+ +L+  T  E+  +I  +N   + Q PGI  K 
Sbjct: 60  YGFINEEEKEMFLSLIKVTGIGPKSALAILASSTPHEVKLAIENENDAYLTQFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK      + +++   + + Q +          A+ AL  LGY + + +  
Sbjct: 120 ARQIVLDLKGKVT----ITEENSDDLLQTQVNGNEQNQIISEALLALQALGYSKRELSKV 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             S+ K   N     + +++ L+ +
Sbjct: 176 EKSLNKHNVN--SVDEAVKIGLQTL 198


>gi|289706228|ref|ZP_06502591.1| Holliday junction DNA helicase RuvA [Micrococcus luteus SK58]
 gi|289557067|gb|EFD50395.1| Holliday junction DNA helicase RuvA [Micrococcus luteus SK58]
          Length = 214

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 48/206 (23%), Positives = 96/206 (46%), Gaps = 7/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +  D  +I V G+        +TL+ L + G    +     +++D + L
Sbjct: 1   MIASLSGTVEHVALDRAVIAVGGLGVQFSATPQTLATLHE-GRPGAVQTHLVVKEDALTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F +L +  GVG R+A+ +LS      +  ++  ++ K + ++PGI  K+
Sbjct: 60  YGFADRDEREVFEVLITANGVGPRLALAILSVHHPEAVRRAVTEEDEKTLTRVPGIGPKM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ EL G+       V +  + V+           +  + + A+  LG+ + +A  A
Sbjct: 120 ARKIIVELSGRLAPTGEPVPEAEAEVSD---EPAVETVWHADVVQAMAGLGWSEKEALKA 176

Query: 181 VV---SVLKKEKNIADDSQIIRLALR 203
           V    +   +     D + ++R  LR
Sbjct: 177 VEATVAARPELDEGRDVAALLRATLR 202


>gi|288923988|ref|ZP_06418058.1| DNA recombination protein RuvA domain I [Frankia sp. EUN1f]
 gi|288344666|gb|EFC79125.1| DNA recombination protein RuvA domain I [Frankia sp. EUN1f]
          Length = 217

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 57/215 (26%), Positives = 96/215 (44%), Gaps = 11/215 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G +E L     ++DV GV  +++C   TL+ L ++G+   L     +R+ ++ L
Sbjct: 1   MIASISGTVEALSPTSAVVDVGGVGILVWCTPATLARL-RVGERAKLSTTLVVRETELTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F +LQ   GVG R+A  VL   +   +  ++  ++   + ++PGI  K 
Sbjct: 60  YGFADADERDVFEILQGAAGVGPRLAQAVLGVHSPDAVRRAVAAEDLAALTKVPGIGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +L+ K    S+ V      V             A     ALV LGY   +A  A
Sbjct: 120 AQRIVLDLRDKIGPPSAPVPAPRGAVAAAAVAELRPGGPAEQVRDALVGLGYSAREAQDA 179

Query: 181 VVSVLK----------KEKNIADDSQIIRLALRAI 205
           VV+                +  D + ++R +L  +
Sbjct: 180 VVAAGVAAGADAGVTGDAGDAVDPAALLRASLAIL 214


>gi|281413717|ref|ZP_06245459.1| Holliday junction DNA helicase RuvA [Micrococcus luteus NCTC 2665]
          Length = 216

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 48/206 (23%), Positives = 93/206 (45%), Gaps = 7/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +  D  +I V G+        +TLS L + G    +     +++D + L
Sbjct: 3   MIASLSGTVEHVALDRAVIAVGGLGVQFSATPQTLSTLHE-GRPGAVQTHLVVKEDALTL 61

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF    +R+ F +L +  GVG R+A+ +LS      +  ++  ++ K + ++PGI  K+
Sbjct: 62  SGFADRDEREVFEVLITANGVGPRLALAILSVHHPETVRRAVTEEDEKTLTRVPGIGPKM 121

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ EL G+       V    +  +           +  + + A+  LG+ + +A  A
Sbjct: 122 ARKIIVELSGRLAPTGEPVPGAEAEASD---EPAVETVWHADVVQAMAGLGWSEKEALKA 178

Query: 181 VV---SVLKKEKNIADDSQIIRLALR 203
           V    +   +     D + ++R  LR
Sbjct: 179 VEATVAARPELDEGRDVAALLRATLR 204


>gi|255534553|ref|YP_003094924.1| Holliday junction DNA helicase RuvA [Flavobacteriaceae bacterium
           3519-10]
 gi|255340749|gb|ACU06862.1| Holliday junction DNA helicase RuvA [Flavobacteriaceae bacterium
           3519-10]
          Length = 255

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 99/205 (48%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KGN++ L    V+IDV GV Y +   ++T   L  +G    L ++  +R+D   L
Sbjct: 62  MIYSLKGNVQELNPTSVIIDVNGVGYYVGVSLQTSEKLV-LGKETFLNIQQIIREDAHLL 120

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++ F LL SV GVG   A+ +LS ++  E+  +I+  NS ++ ++ GI  K 
Sbjct: 121 FGFNTISEKELFNLLISVNGVGPVSALIMLSSLSLQEIASAILSGNSLLLQKVKGIGTKT 180

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +L+ K    +       + VN               A+SAL  LG  +  +   
Sbjct: 181 AERIIVDLRDKVQKFNISEGNISNFVN---------NKVKDEALSALEVLGIPKKMSEKI 231

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
               LK   ++     +++  L+ I
Sbjct: 232 ADRFLKTNADL-SVEDLVKQILKNI 255


>gi|222153876|ref|YP_002563053.1| Holliday junction DNA helicase RuvA [Streptococcus uberis 0140J]
 gi|254767391|sp|B9DW68|RUVA_STRU0 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|222114689|emb|CAR43773.1| Holliday junction DNA helicase RuvA [Streptococcus uberis 0140J]
          Length = 197

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 94/205 (45%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ YIIY      S    +    T+++   +R+D   L
Sbjct: 1   MFDYIKGQLTKITAKYIVVEANGLGYIIYV-ANPYSFSDSVNQTLTIYLHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTENEKDVFLKLISVSGIGPMTALAIVAVDDNEGLVAAIDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK +++    Q        +Q            AI AL+ LGY   +    
Sbjct: 120 AQQMILDLSGKFVTIPEGGQA-------QQMPKAKGNQQLDEAIEALLALGYKATELKK- 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +  +   + A   Q I+ AL+ +
Sbjct: 172 IRAFFEGTDDTA--EQYIKSALKML 194


>gi|116627021|ref|YP_819640.1| Holliday junction DNA helicase RuvA [Streptococcus thermophilus
           LMD-9]
 gi|122268374|sp|Q03MX8|RUVA_STRTD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|116100298|gb|ABJ65444.1| Holliday junction resolvasome, DNA-binding subunit [Streptococcus
           thermophilus LMD-9]
 gi|312277481|gb|ADQ62138.1| Holliday junction ATP-dependent DNA helicase ruvA [Streptococcus
           thermophilus ND03]
          Length = 196

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 90/205 (43%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   +++I+  G+ YI+       S   ++     +++   +R D   L
Sbjct: 1   MYDYIKGTLVKITAKHIVIETNGLGYIVTV-ANPYSFSDQMNQTIQVYLHQVIRDDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +++ F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTEDEKEVFLKLISVSGIGPTTALAIVAVDDNQGLVAAIDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK   L        +      A+  +       A+ AL+ LGY   +    
Sbjct: 120 AQQMVLDLAGKFAEL-------PAETTNTTANQTAGNQQLDEAMEALLALGYKATELKKV 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
                 ++ N     Q I+ AL+ +
Sbjct: 173 --KAFFEDTN-ETAEQYIKSALKML 194


>gi|55820159|ref|YP_138601.1| Holliday junction DNA helicase RuvA [Streptococcus thermophilus LMG
           18311]
 gi|55822047|ref|YP_140488.1| Holliday junction DNA helicase RuvA [Streptococcus thermophilus
           CNRZ1066]
 gi|81559960|sp|Q5M1Y4|RUVA_STRT1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|81561136|sp|Q5M6H5|RUVA_STRT2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|55736144|gb|AAV59786.1| Holliday junction DNA helicase, subunit A [Streptococcus
           thermophilus LMG 18311]
 gi|55738032|gb|AAV61673.1| Holliday junction DNA helicase, subunit A [Streptococcus
           thermophilus CNRZ1066]
          Length = 196

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 90/205 (43%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   +++I+  G+ YI+       S   ++     +++   +R D   L
Sbjct: 1   MYDYIKGTLVKITAKHIVIETNGLGYIVTV-ANPYSFSDQMNQTIQVYLHQVIRDDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +++ F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTEDEKEVFLKLISVSGIGPTTALAIVAVDDNQGLVAAIDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK   L        +      A+  +       A+ AL+ LGY   +    
Sbjct: 120 AQQMVLDLAGKFAEL-------PAETTNTTANQTAGNQQLDEAMEALLALGYKSTELKKV 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
                 ++ N     Q I+ AL+ +
Sbjct: 173 --KAFFEDTN-ETAEQYIKSALKML 194


>gi|329116352|ref|ZP_08245069.1| Holliday junction DNA helicase RuvA [Streptococcus parauberis NCFD
           2020]
 gi|326906757|gb|EGE53671.1| Holliday junction DNA helicase RuvA [Streptococcus parauberis NCFD
           2020]
          Length = 197

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ YIIY      S    +    T+++   +R+D   L
Sbjct: 1   MFDYIKGQLTKITAKYIVVEANGLGYIIYV-ANPYSFSDSVNQQVTIYLHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTEEEKDVFLKLISVSGIGPMTALAIVAVDDNEGLVMAIDNSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK +                             AI AL+ LGY   +    
Sbjct: 120 AQQMILDLAGKFVEAPKDSAPTSKA-------NAGGNLQLDEAIEALLALGYKATELKK- 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +    E       Q I+ AL+ +
Sbjct: 172 IRAFF--EGTDETAEQYIKSALKML 194


>gi|326329831|ref|ZP_08196151.1| holliday junction DNA helicase RuvA [Nocardioidaceae bacterium
           Broad-1]
 gi|325952417|gb|EGD44437.1| holliday junction DNA helicase RuvA [Nocardioidaceae bacterium
           Broad-1]
          Length = 200

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 49/195 (25%), Positives = 91/195 (46%), Gaps = 8/195 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +     +++V G+   + C   TL+ L + G+   L     +R+D + L
Sbjct: 1   MIASVRGKVAAVSLSTAVVEVGGIGIELLCTPNTLATL-RTGEEAHLPTSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F LLQ+  GVG ++A  +L+ ++   +  +I  +++K + ++PGI  K 
Sbjct: 60  FGFTDTDERTLFELLQTASGVGPKLAQAMLAVLSPDGIRLAISTEDAKTLTKVPGIGQKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +               +   A       +      AL+ LGY    A  A
Sbjct: 120 AQRVILELKDRI-------GAPTGSASAPAAVQQGAAPWRDQVTEALIGLGYNARDADKA 172

Query: 181 VVSVLKKEKNIADDS 195
           V ++  +  + A+ S
Sbjct: 173 VTAIEPEAGDHANIS 187


>gi|163738342|ref|ZP_02145757.1| Holliday junction DNA helicase motor protein [Phaeobacter
           gallaeciensis BS107]
 gi|161388263|gb|EDQ12617.1| Holliday junction DNA helicase motor protein [Phaeobacter
           gallaeciensis BS107]
          Length = 229

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 117/227 (51%), Gaps = 22/227 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +E    D+VLIDV+GV YI+YC  RT++ L   G+   L+ +  +R+D ++L
Sbjct: 1   MIGKLTGRLEYRSSDHVLIDVRGVGYIVYCSDRTMATLPGTGEAVALYTDMVVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S ++++W  LL SVQGVGA+V++ +L  +    +  +I L +   +    G+  K 
Sbjct: 61  YGFPSLMEKEWHRLLTSVQGVGAKVSLAILGTLGPEGVSRAIALGDWATVKAAKGVGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN------------------ 162
           A RI+ +LK KA  + ++       ++     +    +                      
Sbjct: 121 AQRIVLDLKDKAPGVMAMGGTIADAMDGPGLDVVESVAPVEAGKTPRKAPPKAPSGAAAA 180

Query: 163 ---AISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
              A+SAL NLGYG   A  AV        + A+++++IR ALR ++
Sbjct: 181 SAGALSALGNLGYGPSDAAAAVAEAAATYPD-ANEAELIRAALRLLA 226


>gi|310658621|ref|YP_003936342.1| FuvABC resolvasome regulatory subunit [Clostridium sticklandii DSM
           519]
 gi|308825399|emb|CBH21437.1| component of RuvABC resolvasome, regulatory subunit [Clostridium
           sticklandii]
          Length = 199

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 98/205 (47%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  IKG +E    D ++++  G+ Y I   + T+  +  IG+   +  +  +R+D I+L
Sbjct: 1   MLNYIKGILEEKAVDKIVVENNGIGYEILTSLNTIEEI-NIGEKIKIHTKLLVREDDIQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF S  +   F LL SV  +G ++A+  LS   + ++   I+  +   + +IPG+  K 
Sbjct: 60  VGFTSKEELSIFNLLTSVSKIGPKLALSSLSVYKSEKIKLMIVESDINSLVKIPGMGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K   +              +++     +    AI ALV+LG+ + ++   
Sbjct: 120 AERVILELKDKIGVVY---------FTDLESNSEPQLNIGHQAIEALVSLGFSKKESEDV 170

Query: 181 VVSVLKKEKNIAD---DSQIIRLAL 202
           V  ++K   N  +      +I+ AL
Sbjct: 171 VKKIIKSVGNDTESLHVETLIKNAL 195


>gi|242242914|ref|ZP_04797359.1| crossover junction endodeoxyribonuclease [Staphylococcus
           epidermidis W23144]
 gi|242233629|gb|EES35941.1| crossover junction endodeoxyribonuclease [Staphylococcus
           epidermidis W23144]
          Length = 200

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 99/205 (48%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  L+  +V+++  G+ Y I  P  +      +     ++    +R+D   L
Sbjct: 1   MYAYIKGTLSQLFPTHVVVETCGIGYEIQTP-NSYRFQKYLEKEVQIYTSLIVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+++ +++ F+ L  V G+G + A+ +L+  T  E+  +I  +N   + Q PGI  K 
Sbjct: 60  YGFINEEEKEMFLSLIKVTGIGPKSALAILASSTPYEVKLAIENENDAYLTQFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK      + +++   + + Q +          A+ AL  LGY + + +  
Sbjct: 120 ARQIVLDLKGKVT----ITEENSDDLLQTQVNGNEQNQIISEALLALQALGYSKRELSKV 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             S+ K   N     + +++ L+ +
Sbjct: 176 EKSLNKHNVN--SVDEAVKIGLQTL 198


>gi|307720862|ref|YP_003892002.1| Holliday junction DNA helicase subunit RuvA [Sulfurimonas
           autotrophica DSM 16294]
 gi|306978955|gb|ADN08990.1| Holliday junction DNA helicase subunit RuvA [Sulfurimonas
           autotrophica DSM 16294]
          Length = 189

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 94/205 (45%), Gaps = 19/205 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E     YV ++VQG+ Y ++  + T S L K  +  +LF    +R+D   L
Sbjct: 1   MIVGLHGKVEYKEPAYVHVNVQGIVYEVFISLHTFSALPK--EDVSLFTTQIIREDAQLL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+   +++ F  L  + GVG +VAM + S  T ++    I  ++   + ++PGI  K 
Sbjct: 59  FGFMDMSEKKMFSRLIKINGVGPKVAMAICSTYTPSQFATVINNKDVNGVKKVPGIGPKS 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL G    +               +           A  AL  LG+ +D+ + A
Sbjct: 119 AGRILVELNGFDAEILG------------DSATPQASQAFNEASEALEALGFKKDKISKA 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +         D + +++ AL+ +
Sbjct: 167 LSA-----CEGDDTASLVKGALKQL 186


>gi|225871416|ref|YP_002747363.1| Holliday junction DNA helicase RuvA [Streptococcus equi subsp. equi
           4047]
 gi|254767388|sp|C0MAS2|RUVA_STRE4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|225700820|emb|CAW95524.1| Holliday junction DNA helicase RuvA [Streptococcus equi subsp. equi
           4047]
          Length = 198

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 88/205 (42%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ Y+I       S    +    T+++   +R+D   L
Sbjct: 1   MYDYIKGQLTKITAKYIVVEANGLGYMITV-ANPYSFTDCVNQQVTIYLHQVIREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S+ ++  F+ L SV G+G   A+ +++      LV +I   +   + + P I  K 
Sbjct: 60  FGFHSEEEKDVFLKLISVSGIGPTTALAIVAVDDNRGLVNAIDNSDITYLMRFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK       V+      +K              A+ AL+ LGY   +    
Sbjct: 120 AQQMVLDLAGKF------VEAPKEESSKPPKAKQQGNEQLDEAVEALLALGYKATELKK- 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +    E       Q I+ AL+ +
Sbjct: 173 IRAFF--EGTSETAEQYIKSALKML 195


>gi|57234748|ref|YP_181186.1| Holliday junction DNA helicase RuvA [Dehalococcoides ethenogenes
           195]
 gi|90134862|sp|Q3Z9B3|RUVA_DEHE1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|57225196|gb|AAW40253.1| Holliday junction DNA helicase RuvA [Dehalococcoides ethenogenes
           195]
          Length = 194

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 102/204 (50%), Gaps = 14/204 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E   +D+ +I+V GV +  Y P  + + +G++G    +F   H+R+D + L
Sbjct: 1   MISSLSGILEASGKDWAVINVSGVGFRTYMPASSPALIGELGQRVRVFTHLHVREDALNL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +   F  L  V G+G ++ + +LS + A  L  +II  N+++++ IPG+  K 
Sbjct: 61  FGFGTAEELSLFETLIDVSGIGPKLGLAMLSAMNAEALASAIISGNTELLSTIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ ELK K               + E   +  +     + ++ L  LGY   +A  A
Sbjct: 121 ASRIVLELKDKITK------------SWEAGVLIQVTEANSDILATLTALGYSAGEAAKA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           + S+  ++       + I+LAL  
Sbjct: 169 IASL--EDITGMPLEERIKLALNY 190


>gi|120602036|ref|YP_966436.1| Holliday junction DNA helicase RuvA [Desulfovibrio vulgaris DP4]
 gi|166230546|sp|A1VC43|RUVA_DESVV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|120562265|gb|ABM28009.1| Holliday junction DNA helicase subunit RuvA [Desulfovibrio vulgaris
           DP4]
          Length = 202

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 49/192 (25%), Positives = 93/192 (48%), Gaps = 8/192 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  ++G +  +  +  ++    GV Y ++ P  TL+ L   G   + F+ T +R+D + 
Sbjct: 1   MIAYVEGRLAEVAGNACVVVTDGGVGYEVFVPGHTLARLPDKGGRVSFFISTEVREDALE 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  +RQ F++L S+  VGA+  + +LS+    +L   ++  +   + ++ GI  K
Sbjct: 61  LYGFATWDERQTFIVLTSISKVGAKTGLAILSQFRPDDLRRLVVEDDVLALTRVSGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A  I  ELK K           +           +      +A++ L NLGYG+++A+ 
Sbjct: 121 TAQHIFLELKYKLKVEDLPAAAPL-------VTGGAPGGVFRDALAGLANLGYGEEEASH 173

Query: 180 AVVSVLKKEKNI 191
            +  VL  E ++
Sbjct: 174 VLKEVLHGEPDL 185


>gi|27468243|ref|NP_764880.1| holliday junction DNA helicase [Staphylococcus epidermidis ATCC
           12228]
 gi|57867153|ref|YP_188781.1| Holliday junction DNA helicase RuvA [Staphylococcus epidermidis
           RP62A]
 gi|251811047|ref|ZP_04825520.1| crossover junction endodeoxyribonuclease [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|282875933|ref|ZP_06284800.1| Holliday junction DNA helicase RuvA [Staphylococcus epidermidis
           SK135]
 gi|293366401|ref|ZP_06613080.1| crossover junction endoribonuclease subunit A [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|33301648|sp|Q8CS90|RUVA_STAES RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|71153736|sp|Q5HNQ9|RUVA_STAEQ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|27315789|gb|AAO04924.1|AE016748_158 holliday junction DNA helicase [Staphylococcus epidermidis ATCC
           12228]
 gi|57637811|gb|AAW54599.1| Holliday junction DNA helicase RuvA [Staphylococcus epidermidis
           RP62A]
 gi|251805423|gb|EES58080.1| crossover junction endodeoxyribonuclease [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|281294958|gb|EFA87485.1| Holliday junction DNA helicase RuvA [Staphylococcus epidermidis
           SK135]
 gi|291319526|gb|EFE59893.1| crossover junction endoribonuclease subunit A [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329724713|gb|EGG61219.1| Holliday junction DNA helicase RuvA [Staphylococcus epidermidis
           VCU144]
 gi|329733747|gb|EGG70073.1| Holliday junction DNA helicase RuvA [Staphylococcus epidermidis
           VCU045]
 gi|329737232|gb|EGG73486.1| Holliday junction DNA helicase RuvA [Staphylococcus epidermidis
           VCU028]
          Length = 200

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 99/205 (48%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  L+  +V+++  G+ Y I  P  +      +     ++    +R+D   L
Sbjct: 1   MYAYIKGTLSQLFPTHVVVETCGIGYEIQTP-NSYRFQKYLEKEVQIYTSLIVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+++ +++ F+ L  V G+G + A+ +L+  T  E+  +I  +N   + Q PGI  K 
Sbjct: 60  YGFINEEEKEMFLSLIKVTGIGPKSALAILASSTPHEVKLAIENENDAYLTQFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK      + +++   + + Q +          A+ AL  LGY + + T  
Sbjct: 120 ARQIVLDLKGKVT----ITEENSDDLLQTQVNGNEQNQIISEALLALQALGYSKRELTKV 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             S+ K   N     + +++ L+ +
Sbjct: 176 EKSLNKHNVN--SVDEAVKIGLQTL 198


>gi|291301298|ref|YP_003512576.1| Holliday junction DNA helicase RuvA [Stackebrandtia nassauensis DSM
           44728]
 gi|290570518|gb|ADD43483.1| Holliday junction DNA helicase RuvA [Stackebrandtia nassauensis DSM
           44728]
          Length = 200

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 50/206 (24%), Positives = 92/206 (44%), Gaps = 10/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +      I V GV   +     TL+ L ++G   TL+    +R+D + L
Sbjct: 1   MIASLTGTVTHVSTSTATITVGGVGMSVRATPGTLANL-RVGGESTLYTTLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F LLQ+  GVG R+A   L+      +  +I   ++  + +IPG+  K 
Sbjct: 60  YGFEAPDERDLFELLQTASGVGPRLAQAALAVHPPATVRHAIASGDTATLTRIPGVGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K  +L   +  +               S+       L++LG+    A  A
Sbjct: 120 AERLVLELKDKIGALPGSMATEPKAGRPV--------SWRDQVQQGLMSLGWSAKDANGA 171

Query: 181 VVSVLKK-EKNIADDSQIIRLALRAI 205
           +  +  + +    D   +++ A+R +
Sbjct: 172 ITKLDSQVDGEAVDIQGLLKQAIRLL 197


>gi|215427996|ref|ZP_03425915.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
           T92]
 gi|289751217|ref|ZP_06510595.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           T92]
 gi|289691804|gb|EFD59233.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
           T92]
          Length = 196

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 91/205 (44%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+V+I+  GV Y +     TL+ L + G    L     +R+D + L
Sbjct: 1   MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATL-RQGTEARLITAMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F+ L  V GVG R+AM  L+   A  L + +   N   + ++PGI  + 
Sbjct: 60  YGFPDGETRDLFLTLLLVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K                   A   +  +     + ALV LG+   QA  A
Sbjct: 120 AERMVLELRDKV-----------GVAATGGALSTNGHAVRSPVVEALVGLGFAAKQAEEA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             +VL    + A  S  +R AL  +
Sbjct: 169 TDTVLAANHD-ATTSSALRSALSLL 192


>gi|89895213|ref|YP_518700.1| hypothetical protein DSY2467 [Desulfitobacterium hafniense Y51]
 gi|122997255|sp|Q24UN6|RUVA_DESHY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|89334661|dbj|BAE84256.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 201

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 106/206 (51%), Gaps = 8/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +  +  D +++DVQGV Y +  P   L      G    L+    +R+D++ L
Sbjct: 1   MIGMLRGKVWEIQADKLILDVQGVGYQLSIPYGLLGK-AHPGHELILYTHVILREDELAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +++ F+L+ SV G+G + A+ +LS +   +   +I  +N  ++ ++PGI  K 
Sbjct: 60  YGFSSAAEKELFLLMLSVSGIGPKAALSILSTLGIGQTESAIASENITLLTKVPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K         + ++    E A      +F   A+  L+ LG+ Q++A  A
Sbjct: 120 AQRLILELKEKFK------GRAIALEGIEGAGSLPQAAFHSEAMETLLALGFSQEEAKKA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +   L          + +RLALR+++
Sbjct: 174 L-QALPDSAQALSTEEQVRLALRSLA 198


>gi|299144015|ref|ZP_07037095.1| holliday junction DNA helicase RuvA [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298518500|gb|EFI42239.1| holliday junction DNA helicase RuvA [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 198

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 109/205 (53%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I  L ++Y++I+     YI+Y     +  L +I     ++    +R+D + L
Sbjct: 1   MIDYIKGIISELLDNYIVIENNFKGYIVYMSQSDIEQL-EIMQEVKIYTRLIIREDNMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++   R+ F LL SV  VG + +MG+LS ++A++++ +I+ +NSK +   PGI  K 
Sbjct: 60  YGFVNKDSRKLFDLLTSVTSVGPKASMGILSTLSASQIIVAILDENSKALTSSPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K    +   + D+  +         +      A+ AL++LGY + +A  A
Sbjct: 120 ADRIVLELKDKVSKYNFETRFDVKELKNSLKEEIDISP----AVEALISLGYNKYEAKKA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +        D S++I+ AL+ +
Sbjct: 176 LTGI----DENFDVSKMIKEALKRL 196


>gi|125625244|ref|YP_001033727.1| Holliday junction DNA helicase motor protein [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|166230561|sp|A2RP07|RUVA_LACLM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|124494052|emb|CAL99052.1| holliday junction DNA helicase ruvA [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300072054|gb|ADJ61454.1| Holliday junction DNA helicase RuvA [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 197

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 90/205 (43%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +  +    ++ID+ G+ Y+I       +    +     ++V   +R+D   L
Sbjct: 1   MFEYLNGKLVKISPTNIVIDLSGIGYLISV-ANPYAWSALMNTEVKIYVHQVIREDAHSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+++ ++  F+ L SV G+G + A+ +++      L+ +I   + K + + PG+  K 
Sbjct: 60  YGFVNESEKALFLRLISVSGIGPKSALAIIAAADNEGLINAIDNSDIKYLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK  +  +V    +           +       AI AL  LGY   +    
Sbjct: 120 AMQMVLDLAGKFDATGAVGISLLDA-------APASNLALEEAIEALQALGYKATELKKI 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              + ++        + I+ AL+ +
Sbjct: 173 EKKLAQEAG--LTSEEYIKSALKLM 195


>gi|325290232|ref|YP_004266413.1| Holliday junction ATP-dependent DNA helicase ruvA [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324965633|gb|ADY56412.1| Holliday junction ATP-dependent DNA helicase ruvA [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 200

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 8/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  + +D +++DV GV Y++  P   LS + +IG    L     +R+D + L
Sbjct: 1   MIALLRGTVWEMDKDKLIVDVNGVGYLLNVPSGKLSSV-RIGQEVVLHTYLLVREDDLSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    D++ F+ L SV G+G + A+ +LS  ++ +++ +++ +N  +  +I GI  KI
Sbjct: 60  FGFADRQDKELFIKLLSVSGIGPKAALSILSSFSSVQIITALVQENHVMFTEISGIGSKI 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+  ELK K                +  A   S P      + AL+ LG+   +  TA
Sbjct: 120 ARRLTLELKEKFKDYHLE-----GLTGETFAGSESGPGSEPGIMEALLALGFTPGETRTA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V +V K E       + +R ALR ++
Sbjct: 175 VNAVGKLEG--LTFEEQLREALRLLA 198


>gi|162448567|ref|YP_001610934.1| holliday junction DNA helicase [Sorangium cellulosum 'So ce 56']
 gi|161159149|emb|CAN90454.1| holliday junction DNA helicase [Sorangium cellulosum 'So ce 56']
          Length = 244

 Score =  138 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 63/213 (29%), Positives = 107/213 (50%), Gaps = 15/213 (7%)

Query: 2   IGKIKGNIEGLY-EDYVLIDVQGVCYIIYCPI------RTLSCLGKIG-DFCTLFVETHM 53
           IG++ G++     E  V++DV GV Y +  P+      R ++   K G D  TLFV TH+
Sbjct: 38  IGRLSGHVVEEGDEGTVVLDVSGVGYEVTVPLGAVGRARGIAANAKAGSDAITLFVHTHV 97

Query: 54  RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113
           R+D + L+GF +  DR  F +L  +  +G ++AM +LS + A EL   I  + +  +  I
Sbjct: 98  REDALLLYGFATREDRAAFRVLIGISSIGPKIAMAILSALGAGELAAVITRRETARLTAI 157

Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           PG+  K A R++ ELK K + L        + ++   +   +  +      SAL  +GY 
Sbjct: 158 PGVGKKTAERLVLELKDKLVHL------PAAPLSPAASPPVATGAKQDLLHSALTRMGYR 211

Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
             +A  AV ++  +  + A    ++R AL  +S
Sbjct: 212 PAEAERAVTALGARV-DSAPLGDLVRDALALLS 243


>gi|46580661|ref|YP_011469.1| Holliday junction DNA helicase RuvA [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|81566321|sp|Q729U3|RUVA_DESVH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|46450080|gb|AAS96729.1| Holliday junction DNA helicase RuvA [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311234390|gb|ADP87244.1| Holliday junction DNA helicase RuvA [Desulfovibrio vulgaris RCH1]
          Length = 202

 Score =  138 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 49/192 (25%), Positives = 93/192 (48%), Gaps = 8/192 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  ++G +  +  +  ++    GV Y ++ P  TL+ L   G   + F+ T +R+D + 
Sbjct: 1   MIAYVEGRLAEVAGNACVVVTDGGVGYEVFVPGHTLARLPDKGGRVSFFISTEVREDALE 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  +RQ F++L S+  VGA+  + +LS+    +L   ++  +   + ++ GI  K
Sbjct: 61  LYGFATWDERQTFIVLTSISKVGAKTGLAILSQFRPDDLRRLVVEDDVLALTRVSGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A  I  ELK K           +           +      +A++ L NLGYG+++A+ 
Sbjct: 121 TAQHIFLELKYKLKVEDLPAAAPL-------VTGGAPGGVFRDALAGLANLGYGEEEASH 173

Query: 180 AVVSVLKKEKNI 191
            +  VL  E ++
Sbjct: 174 VLKDVLHGEPDL 185


>gi|298529992|ref|ZP_07017394.1| Holliday junction DNA helicase RuvA [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509366|gb|EFI33270.1| Holliday junction DNA helicase RuvA [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 203

 Score =  138 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 93/205 (45%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I+G +    +   L+    G+ Y ++     L  +   G+   L     +R+D + 
Sbjct: 1   MIALIRGTLVSFNDKSCLVMTASGLGYEVHVSAMGLQNMPGQGEELELHTSMVVREDALD 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  +R+ F +L +   +G + A+ +L   + +++ + I  ++   + Q+PGI  K
Sbjct: 61  LYGFFTRDERETFNVLLNAPKLGPKTALAILGIFSPSQIQKIINTEDEAALTQVPGIGSK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++ +LK +   +S   +                     + ++ L +LGY   + T 
Sbjct: 121 TARRLILDLKDRLGFISPQHEDPRPAPGPRG--------VRQDVLAGLTSLGYSAAEVTP 172

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            +  VL+KE ++ D S  IR  L+ 
Sbjct: 173 LLDEVLEKEPDL-DVSSAIRAVLKE 196


>gi|117928551|ref|YP_873102.1| Holliday junction DNA helicase subunit RuvA [Acidothermus
           cellulolyticus 11B]
 gi|166229623|sp|A0LUK6|RUVA_ACIC1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|117649014|gb|ABK53116.1| Holliday junction DNA helicase subunit RuvA [Acidothermus
           cellulolyticus 11B]
          Length = 196

 Score =  138 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 100/207 (48%), Gaps = 16/207 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +  D V+++V G    +     T++   ++G+         +R+D + L
Sbjct: 1   MISFVSGRVAAVTPDSVIVEVGGFGVQLLATPATIAR-ARVGERARFATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +R  F LLQ+  GVG R+A+ +L   + T L  ++  ++ K +A +PGI  K 
Sbjct: 60  YGFADDDERTVFELLQTASGVGPRLALAMLGVHSPTALRAAVATEDVKALALVPGIGRKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK +  + S+   +  S              +     + L+NLGY   QA  A
Sbjct: 120 AQRIILELKDRLGTPSTAAAESTSG-------------WRDAVHAGLLNLGYTARQADEA 166

Query: 181 VVSVLKKEKNIA--DDSQIIRLALRAI 205
           + ++  +  + A  D +  +RLAL  +
Sbjct: 167 IAAIAGELDDSAAVDTATALRLALATL 193


>gi|145594353|ref|YP_001158650.1| Holliday junction DNA helicase RuvA [Salinispora tropica CNB-440]
 gi|189045768|sp|A4X5X2|RUVA_SALTO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|145303690|gb|ABP54272.1| Holliday junction DNA helicase subunit RuvA [Salinispora tropica
           CNB-440]
          Length = 200

 Score =  138 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 98/206 (47%), Gaps = 11/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     D+ +++V GV   + C   T++ L ++G    L     +R+D + L
Sbjct: 1   MIASVRGVVTATGPDHAVLEVGGVGLAVQCAPGTIADL-RVGQPARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D  +  F LLQ+  GVG R+A  VL+      +  +I   ++  + ++PGI  K 
Sbjct: 60  YGFADDDAKALFELLQTASGVGPRLAQAVLAVHPPEAVRAAIANADTAALTRVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +   +          V  + A   +  ++      ALV LG+   QA  A
Sbjct: 120 AERLVLELRDRIGPV---------PVGADSAAGVTTGAWPEQVRQALVGLGWTAAQADQA 170

Query: 181 VVSVLKK-EKNIADDSQIIRLALRAI 205
           V +V +  +  +     ++R A+R +
Sbjct: 171 VTAVAETVDGAVPPVPVLLRQAIRLL 196


>gi|317121686|ref|YP_004101689.1| Holliday junction DNA helicase RuvA [Thermaerobacter marianensis
           DSM 12885]
 gi|315591666|gb|ADU50962.1| Holliday junction DNA helicase RuvA [Thermaerobacter marianensis
           DSM 12885]
          Length = 223

 Score =  138 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 53/181 (29%), Positives = 91/181 (50%), Gaps = 7/181 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  L  D V IDV GV + +    +T   L   G+   L     +R+DQ  L
Sbjct: 1   MIAFLRGELVALAGDEVWIDVGGVGFRVAVSRQTQRRLPPAGEPVRLLTRLVVREDQWSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++  F  L +V GVG RVA+ VLS ++  EL  +++LQ+  ++ ++PG+  K+
Sbjct: 61  YGFATADEQAAFDALLTVSGVGPRVALAVLSVLSPEELRRAVVLQDPALLTRVPGVGPKL 120

Query: 121 ASRIMTELKGKAIS-------LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           A R++TEL+ +            +V     +             S   +A++AL +LGY 
Sbjct: 121 ARRLLTELRDRLGEPLAEGAAAGAVAPAGGAASTPGGLPGGVATSPREDALAALESLGYS 180

Query: 174 Q 174
           +
Sbjct: 181 R 181


>gi|298242494|ref|ZP_06966301.1| Holliday junction DNA helicase RuvA [Ktedonobacter racemifer DSM
           44963]
 gi|297555548|gb|EFH89412.1| Holliday junction DNA helicase RuvA [Ktedonobacter racemifer DSM
           44963]
          Length = 196

 Score =  138 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 99/206 (48%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G ++  + D+V + V G    ++ P  T+S LG+ G    L    HMR+D I L
Sbjct: 1   MITSIHGILQTCHPDHVTVRVGGFGIQVFAPATTISGLGETGTEVELHTHFHMREDGIAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +++DR  F  L +V GVG RVA+ +LS + A  L ++I  ++ + +    G+  ++
Sbjct: 61  YGFATEMDRDAFEQLIAVNGVGPRVALSLLSVMDAPALYKAIADEDQQRLGLAKGVGKRL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A++++  LKGK  S+          V                 + AL+ LG+   +A  A
Sbjct: 121 AAQLILALKGKLPSI----------VPAGTISGVPSGKLQTEVLEALMGLGFSSAEAQAA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  + ++        Q +  ALR  S
Sbjct: 171 IAKIPQE--QAMTLEQQVTYALRTFS 194


>gi|312865841|ref|ZP_07726063.1| Holliday junction DNA helicase RuvA [Streptococcus downei F0415]
 gi|311098716|gb|EFQ56938.1| Holliday junction DNA helicase RuvA [Streptococcus downei F0415]
          Length = 196

 Score =  138 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 86/205 (41%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  +   Y++++  G+ Y++       S   ++     +++   +R+D   L
Sbjct: 1   MYDYLKGILTKITAKYIVVEAGGLGYMVNV-ANPYSFSDQMNQDIQIYLHYVVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  YGFHNEEEKAVFLNLISVSGIGPTTALAIVAVDDNEGLVAAIDNSDIKYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK + +            K      S       A+ AL  LGY   +    
Sbjct: 120 AQQMVLDLAGKFVEVPQ-------ADGKTSPQAQSTNQNLNEAMEALQALGYKASELKKV 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
               +  E         I+ AL+ +
Sbjct: 173 ---RVFFEGTDETAENYIKSALKML 194


>gi|94984833|ref|YP_604197.1| Holliday junction DNA helicase RuvA [Deinococcus geothermalis DSM
           11300]
 gi|122986676|sp|Q1J0F6|RUVA_DEIGD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|94555114|gb|ABF45028.1| Holliday junction DNA helicase RuvA [Deinococcus geothermalis DSM
           11300]
          Length = 198

 Score =  138 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 93/205 (45%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  + E   +I   GV Y ++CP  TL  L   G    L +   +R+D   L
Sbjct: 1   MIAYLSGAVREVREASAVIVAGGVGYEVFCPASTLGRLV-PGQPAELNIRHVVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL     + F LL  V GVG ++A+ +LS +  T + + ++  + K+++ + G+  K 
Sbjct: 60  FGFLDTDSLRLFDLLIGVSGVGPKLALSLLSALPVTAVAQGLLSGDVKLLSSVSGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K        +   +             +   +AI AL+ LG+ + Q  + 
Sbjct: 120 AERLVLELQNKVP------EHLAAGAPVSAGKAALTSTAGRDAIEALLALGFREPQVRSV 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +L  +        +IR  L  +
Sbjct: 174 VAELLAADPE-QSADALIRKGLGKL 197


>gi|254518551|ref|ZP_05130607.1| holliday junction DNA helicase motor protein [Clostridium sp.
           7_2_43FAA]
 gi|226912300|gb|EEH97501.1| holliday junction DNA helicase motor protein [Clostridium sp.
           7_2_43FAA]
          Length = 201

 Score =  138 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 107/205 (52%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I+G  +G+  DY++I+  G+ Y I+    T+S + KI +   L++E  +R+D + L
Sbjct: 1   MYEYIRGKYKGINRDYIIIENNGIGYKIFTSGATMSSMPKIDEEVKLYLEQIVREDFLGL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  + + F LL S+ GVGA+ A+ +LS      L  +I++ + K + + PGI  K 
Sbjct: 61  YGFDAREELEMFKLLLSINGVGAKAALSLLSISRINNLRYAIMMGDEKHLCKAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K       + + +    + +  + +  S    A+ AL+ LGY + +A  A
Sbjct: 121 AGRIILELKDKIKK--EDISEVIEGSGEFEDLMPNNASNIAEALGALLALGYSEKEAEAA 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  V K +        II+  L+ +
Sbjct: 179 LKKVDKTD----TLENIIKNCLKVL 199


>gi|256831252|ref|YP_003159980.1| Holliday junction DNA helicase RuvA [Desulfomicrobium baculatum DSM
           4028]
 gi|256580428|gb|ACU91564.1| Holliday junction DNA helicase RuvA [Desulfomicrobium baculatum DSM
           4028]
          Length = 198

 Score =  138 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 57/207 (27%), Positives = 99/207 (47%), Gaps = 12/207 (5%)

Query: 1   MIGKIKGNIEGLYEDY-VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  ++G +    E+  VL+   GV Y ++     L+ L   GD   LFV T +R+D + 
Sbjct: 1   MIAYLEGTVLRRDEESCVLLTAGGVGYQLHLTSDGLAALPGAGDTARLFVHTLVREDALT 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LF F S  +RQ F+ L     +G + A+ +L   +  EL   I  ++   ++++PGI  K
Sbjct: 61  LFAFSSWEERQAFVTLLGAPKLGPKTALAMLGCYSPAELAACIAKEDVAALSRVPGIGAK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A R++            +  + +S  +         P+ + +  +ALV+LGYG+ +   
Sbjct: 121 TAKRLL----------LDLKDKLVSSPSLLPGRTAPAPTASADCAAALVSLGYGRHEVDE 170

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
            V  V +KE ++ D    IR AL+  +
Sbjct: 171 VVRVVFEKEPDL-DAGSAIRQALKIFA 196


>gi|241889770|ref|ZP_04777068.1| holliday junction DNA helicase RuvA [Gemella haemolysans ATCC
           10379]
 gi|241863392|gb|EER67776.1| holliday junction DNA helicase RuvA [Gemella haemolysans ATCC
           10379]
          Length = 193

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 95/205 (46%), Gaps = 15/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG I  +    +++D  G+ Y I         L    +  T+F+   +R+D   L
Sbjct: 1   MYAYIKGKISEINPTNIVVDNNGIGYEIVVANPYEYQL---NEEKTVFISQQVREDSNIL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +   ++ F+LL  V+GVG + A+ +L+  T+ E++ +I  Q+   + + PGI  K 
Sbjct: 58  YGFSNKDQKKVFLLLLKVKGVGPKSALAILAGGTSEEIIGAIENQDVTYLTKFPGIGKKS 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +L+GK              +    +   ++ ++  +AI AL  LGY + +    
Sbjct: 118 AQQIILDLQGKVD----------FSMTNISSAPTAVNNYLSDAILALEALGYSKKELAKI 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +     + +   + ++  L+ +
Sbjct: 168 EKKLSA--FDFSGVDEYVKQGLKLL 190


>gi|116513152|ref|YP_812059.1| Holliday junction DNA helicase motor protein [Lactococcus lactis
           subsp. cremoris SK11]
 gi|123025083|sp|Q02VS6|RUVA_LACLS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|116108806|gb|ABJ73946.1| Holliday junction DNA helicase subunit RuvA [Lactococcus lactis
           subsp. cremoris SK11]
          Length = 197

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 90/205 (43%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +  +    ++ID+ G+ Y+I       +    +     ++V   +R+D   L
Sbjct: 1   MFEYLNGKLVKISPTNIVIDLSGIGYLISV-ANPYAWSALMNTEVKIYVHQVIREDAHSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+++ ++  F+ L SV G+G + A+ +++      L+ +I   + K + + PG+  K 
Sbjct: 60  YGFVNESEKALFLRLISVSGIGPKSALAIIAAADNEGLINAIDNSDIKYLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK  +  +V    +           +       AI AL  LGY   +    
Sbjct: 120 AMQMVLDLAGKFDATGAVGISLLDA-------APAGNLALEEAIEALQALGYKATELKKI 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              + ++        + I+ AL+ +
Sbjct: 173 EKKLEQEAG--LTSEEYIKSALKLM 195


>gi|224436530|ref|ZP_03657539.1| Holliday junction DNA helicase RuvA [Helicobacter cinaedi CCUG
           18818]
 gi|313143033|ref|ZP_07805226.1| holliday junction ATP-dependent DNA helicase ruvA [Helicobacter
           cinaedi CCUG 18818]
 gi|313128064|gb|EFR45681.1| holliday junction ATP-dependent DNA helicase ruvA [Helicobacter
           cinaedi CCUG 18818]
          Length = 195

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 55/207 (26%), Positives = 97/207 (46%), Gaps = 13/207 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59
           MI  ++G I       + IDV GV Y +   +   S L G+ G    +     +R+D   
Sbjct: 1   MIVGLRGVIIRSEPMMIDIDVGGVIYGVQMSLNATSKLRGEGGKEVKIICTQIIREDSHL 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF+ ++++Q F  L  + GVG +VA+ +LS  T  E  + I  ++   + ++PGI  K
Sbjct: 61  LFGFVEEIEKQTFERLIKINGVGPKVALAILSTYTPMEFAKIISNKDVDALKKVPGIGAK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +IM ++ G    L       +S  +     +    S    A+ AL +LG+    A  
Sbjct: 121 GAGKIMVDVAGFFAGL-------ISDTSLADGKLSQENSLKNEALLALQSLGFKNTDAQK 173

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           A+  +          S++++LAL+ ++
Sbjct: 174 ALQGI-----EAQSVSELVKLALKKLA 195


>gi|218888287|ref|YP_002437608.1| Holliday junction DNA helicase RuvA [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|226725439|sp|B8DNJ8|RUVA_DESVM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|218759241|gb|ACL10140.1| Holliday junction DNA helicase RuvA [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 202

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 93/192 (48%), Gaps = 8/192 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  ++G +  +  +  ++    GV Y ++ P  TLS L + G      V T +R+D + 
Sbjct: 1   MIAYVEGRVAEISGNACVVVTEGGVGYEVHLPAHTLSRLPERGGQVAFHVRTEVREDALE 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF +  +RQ FM+L ++  VGAR A+ +LS+    +L   ++  +   + ++ GI  K
Sbjct: 61  LFGFSTWDERQTFMVLTTISKVGARTALAILSQFRPDDLRRLVVEDDVLALTRVSGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A  I  ELK K           ++          +      +A++ L NLGY +D+A  
Sbjct: 121 TAQHIFLELKYKLKVEDLPAGLVLAGG-------AAPGGVFRDALAGLGNLGYLEDEAAP 173

Query: 180 AVVSVLKKEKNI 191
            +  VLK E ++
Sbjct: 174 VLKEVLKAEPDL 185


>gi|260903852|ref|ZP_05912174.1| Holliday junction DNA helicase, RuvA subunit [Brevibacterium linens
           BL2]
          Length = 206

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 96/204 (47%), Gaps = 11/204 (5%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           I  + G +  +  D+++I   GV   +     TLS   + G    L     +R+D + LF
Sbjct: 10  ISFLSGTVHRIAADHLVILTYGVGRRVNVTPDTLSN-TRHGADIELVTTLVVREDSMTLF 68

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF ++ +   F +L S+ G+G R+AM +LS +   EL  +I  Q++  + ++PGI  K A
Sbjct: 69  GFGTEDENHTFEVLLSISGIGPRLAMAILSVMGPGELAAAISNQDANALTRVPGIGKKGA 128

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
           SRI+ EL+ K   LS+                 S        + ALV LG+ + QA   V
Sbjct: 129 SRIILELENKLPKLSASEPGPQ----------LSFGGANQQVVDALVGLGWKEAQAADVV 178

Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205
             V+      A  S +++ +L+ +
Sbjct: 179 QEVVNDLGQNAGTSALLKASLKVL 202


>gi|24380422|ref|NP_722377.1| Holliday junction DNA helicase RuvA [Streptococcus mutans UA159]
 gi|44888487|sp|Q8CWW3|RUVA_STRMU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|24378447|gb|AAN59683.1|AE015030_13 putative Holliday junction DNA helicase RuvA [Streptococcus mutans
           UA159]
          Length = 197

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 96/206 (46%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKGN+  +   Y++++  G+ Y+I       S   +I     +++   +R+D   L
Sbjct: 1   MYDYIKGNLTKITAKYIVLETGGLGYVINV-ANPYSFSNQINQAIQIYIHHVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++  F+ L SV G+G   A+ +++      LV++I   +   + + P I  K 
Sbjct: 60  YGFHTEDEKAVFLNLISVSGIGPTSALAIIAADDNEGLVKAIDHSDVNYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK + ++ V        +K +    +       A+ AL+ LGY  ++    
Sbjct: 120 AQQMVLDLAGKFVDINEV------STDKSKVSTINNNQELEEAVEALLALGYKTNE---- 169

Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205
           +  + K  +   D     I+ AL+ +
Sbjct: 170 LKKIEKFFEGTTDTAENYIKSALKML 195


>gi|56697949|ref|YP_168319.1| Holliday junction DNA helicase RuvA [Ruegeria pomeroyi DSS-3]
 gi|81349137|sp|Q5LNT7|RUVA_SILPO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|56679686|gb|AAV96352.1| Holliday junction DNA helicase RuvA [Ruegeria pomeroyi DSS-3]
          Length = 224

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 116/222 (52%), Gaps = 17/222 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++    D+VLIDV+GV YI+YC  RTL+ L  +G+   L+ +  +R+D ++L
Sbjct: 1   MIGKLTGRLDYRSTDHVLIDVRGVGYIVYCSDRTLAALPGVGEVVALYTDMVVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+S  +++W  LL SVQGVGA+V++ +L  +    +  +I L +   +    G+  K 
Sbjct: 61  FGFMSLAEKEWHRLLCSVQGVGAKVSLAILGALGPDGVSRAIALGDWASVKSAKGVGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQ----------------QDMSCVNKEQAHICSMPSFAINAI 164
           A RI+ +LK KA  + ++                  +  +   ++ A      +    A+
Sbjct: 121 AQRIVLDLKDKAPGVMAMGGTVAQAMEGAVEVVEVIEPAAPAPRKAAPPGGAGAATAGAL 180

Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           SAL NLGYG   A  AV     +     +   +IR ALR ++
Sbjct: 181 SALSNLGYGPSDAAAAVAQAAAEAPEAGET-DLIRAALRLLA 221


>gi|259046890|ref|ZP_05737291.1| Holliday junction DNA helicase RuvA [Granulicatella adiacens ATCC
           49175]
 gi|259036513|gb|EEW37768.1| Holliday junction DNA helicase RuvA [Granulicatella adiacens ATCC
           49175]
          Length = 195

 Score =  137 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 89/205 (43%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +  +    ++IDV GV Y +            +     + V+  +R+D I L
Sbjct: 1   MYEYLNGELAHILPTAIVIDVHGVGYQV-VFANPYRLQDSLKKQIKVLVQQVVREDSITL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+S  +R+ F  L SV G+G + AM +L+       V ++   N   + + PG+  K 
Sbjct: 60  YGFISSEERELFQRLISVSGIGPKSAMSILANDDTEGFVNAVESGNVTYLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK  +L              +A + +  +    A  AL+ LGY   +    
Sbjct: 120 AQQIILDLKGKFEALPEE---------TTKAVVSTNQATLEEAKEALLGLGYSAKEIKKI 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             S+     +     + +++A + +
Sbjct: 171 WKSLEAAAPS--TTQEALKVAFKLL 193


>gi|254511523|ref|ZP_05123590.1| Holliday junction DNA helicase RuvA [Rhodobacteraceae bacterium
           KLH11]
 gi|221535234|gb|EEE38222.1| Holliday junction DNA helicase RuvA [Rhodobacteraceae bacterium
           KLH11]
          Length = 225

 Score =  137 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 121/223 (54%), Gaps = 18/223 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G ++    D+VLIDV+GV Y++YC  RT++ L  +G+  +++ +  +R+D ++L
Sbjct: 1   MIGKLTGRLDYRAADHVLIDVRGVGYLVYCSDRTMAALPGVGEAVSIYTDMVVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS ++++W  LL SVQGVGA+V++ +LS +    +  +I L +   +    G+  K 
Sbjct: 61  YGFLSLVEKEWHRLLCSVQGVGAKVSLAILSALGPDGVSRAIALGDWGAVKAAKGVGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA-----------------INA 163
           A RI+ +LK KA  + ++       ++     +  +   A                   A
Sbjct: 121 AQRIVLDLKDKAPGVMAMGGTVTEAMDGPPLEVVELAEPAPAPKRGAQPASGAAAASAGA 180

Query: 164 ISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           +SAL NLGYG   A +AV        + A ++ +IR AL+ ++
Sbjct: 181 LSALANLGYGPSDAASAVAEAAASLPD-AGEADLIRAALKLLA 222


>gi|172058107|ref|YP_001814567.1| Holliday junction DNA helicase RuvA [Exiguobacterium sibiricum
           255-15]
 gi|229560031|sp|B1YJR2|RUVA_EXIS2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|171990628|gb|ACB61550.1| Holliday junction DNA helicase RuvA [Exiguobacterium sibiricum
           255-15]
          Length = 197

 Score =  137 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 89/205 (43%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  ++V I+V G+ Y I  P       G   +   ++   ++R+DQ  L
Sbjct: 1   MIEFVRGEVAYVCAEFVTIEVGGIGYKIVAPNPFFYRTGD--EQVIVYTYHYVREDQEVL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +R  F  L  V G+G + ++ +++      LVE+I  +    + + PG+  K 
Sbjct: 59  FGFRSRRERALFTKLLGVTGIGPKGSLAIVASGDVDALVEAIEQEKESYLIKFPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A ++  +LKGK   L+                     +    A  AL  LGY + +    
Sbjct: 119 AKQMTLDLKGKLAELAPDYIPSEGLF-------AQGNAELNEACEALTALGYSEREVEK- 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V   L+    +    Q ++ AL+ +
Sbjct: 171 VKKALQ--GEVLSTDQYVKRALQLL 193


>gi|227825064|ref|ZP_03989896.1| holliday junction DNA helicase ruvA [Acidaminococcus sp. D21]
 gi|226905563|gb|EEH91481.1| holliday junction DNA helicase ruvA [Acidaminococcus sp. D21]
          Length = 201

 Score =  137 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 98/206 (47%), Gaps = 8/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG IKG ++ +  +Y  ++ QGV Y IY     L  +  + D   ++    +R+D + L
Sbjct: 1   MIGFIKGRVDTIGSNYAFVETQGVGYRIYMNTSDLGRMV-LDDKVKVYTYLAVREDALTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS      F  L +V G+G +VA G+LS     + + +I  ++ K + ++PGI  K 
Sbjct: 60  YGFLSQEAYGLFTKLITVSGIGPKVAQGILSASKVDDFLLAIKNRDVKFLTKLPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK       +  +  +   N          S     + AL +LGY Q++ +  
Sbjct: 120 AERMLLELKD-----LTGPEGPLPESNGGFLAPEGPASALTETMEALASLGYTQNEISGV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +  K         +++ AL+ ++
Sbjct: 175 MNRI--KVTADMSAEDLLKKALQVMA 198


>gi|160947139|ref|ZP_02094306.1| hypothetical protein PEPMIC_01071 [Parvimonas micra ATCC 33270]
 gi|158446273|gb|EDP23268.1| hypothetical protein PEPMIC_01071 [Parvimonas micra ATCC 33270]
          Length = 200

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 106/205 (51%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G ++ +Y DY++ID  G+ Y I+    TL  +  +GD+ T++ +  +++D + L
Sbjct: 1   MYEYISGELKFIYNDYIVIDNGGIGYKIFTSNNTLFNV-TVGDYYTIYTDYIVKEDYVAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +   F LL SV  +G +VA G+LS ++   L  +I+  ++  +A   G+  K 
Sbjct: 60  FGFKTMDELSMFKLLVSVNSIGPKVACGILSSMSVDSLKLTIVNGDAVALATAKGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELK K  S+ S+  +D+S +                   AL+NLG+ ++     
Sbjct: 120 AQKIILELKDKI-SIDSISSKDISGMEASTLDSGKDLEKRELVSDALINLGFMKNDIERF 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + S+   E  I     II+L+++ +
Sbjct: 179 LSSINIDEMEI---EDIIKLSMKKL 200


>gi|225021302|ref|ZP_03710494.1| hypothetical protein CORMATOL_01321 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946035|gb|EEG27244.1| hypothetical protein CORMATOL_01321 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 198

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 94/205 (45%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +   + +I+  GV Y +     TL  L + G    + +   +R++   L
Sbjct: 1   MIVSLRGTVIDITAHHAVIECAGVGYQVLATPSTLGHLTR-GAETFILITMIVREESQTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL    R  F+ LQ+V G+G ++A+   S  T  EL  +I   ++K + +IPG+  ++
Sbjct: 60  YGFLDAATRDMFVTLQTVSGLGPKLALAAQSVYTTPELAHAITHGDTKTLQKIPGVGKRM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K  + ++      + V                 + AL +LG+ +  A   
Sbjct: 120 AERMVVDLKDKVATYATPETPTPAAVPHI--------DTYEQVLEALASLGFAEKTAEPV 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +VL  +         +R +L  +
Sbjct: 172 LTTVLAADP-TLTTPAALRASLNLL 195


>gi|160915302|ref|ZP_02077515.1| hypothetical protein EUBDOL_01311 [Eubacterium dolichum DSM 3991]
 gi|158433101|gb|EDP11390.1| hypothetical protein EUBDOL_01311 [Eubacterium dolichum DSM 3991]
          Length = 193

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 100/206 (48%), Gaps = 18/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I     D ++I+  G+ Y IY          ++     L+   H+R+D I L
Sbjct: 1   MIAFIKGIIHSYSNDSLIIENNGIGYRIYISNP---QSVRLNSEVILYTYQHVREDAITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +   F+ L SV+GVG + A+ +L+     +++E+I   + K++  +PGI  K 
Sbjct: 58  FGFTTMEEHDLFLQLISVKGVGPKTALAMLAVCPVKQMIEAIEHNDVKLLKSLPGIGAKS 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK +   S +Q                 +  ++AI AL  LGY   +  + 
Sbjct: 118 ASQIVLDLKGKLVEEVSEIQ-------------VKENAELVDAIEALKALGYKNAEINSI 164

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
              +   E++ A   Q IR AL  ++
Sbjct: 165 KKEL--SEESFATSDQYIRKALSILA 188


>gi|305681259|ref|ZP_07404066.1| Holliday junction DNA helicase RuvA [Corynebacterium matruchotii
           ATCC 14266]
 gi|305659464|gb|EFM48964.1| Holliday junction DNA helicase RuvA [Corynebacterium matruchotii
           ATCC 14266]
          Length = 198

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 93/205 (45%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +   + +I+  GV Y +     TL  L + G    + +   +R++   L
Sbjct: 1   MIVSLRGTVIDITAHHAVIECAGVGYQVLATPTTLGHLTR-GAETFILITMIVREESQTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL    R  F  LQ+V G+G ++A+   S  T  EL  +I   ++K + +IPG+  ++
Sbjct: 60  YGFLDAATRDMFATLQTVSGLGPKLALAAQSVYTTPELAHAITHGDTKTLQKIPGVGKRM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +LK K  + ++      + V                 + AL +LG+ +  A   
Sbjct: 120 AERMVVDLKDKVATYAAPETPTTAAV--------PHTDTYEQVLEALASLGFAEKTAEPV 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +VL  +         +R +L  +
Sbjct: 172 LTTVLAADP-TLTTPAALRASLNLL 195


>gi|145224407|ref|YP_001135085.1| Holliday junction DNA helicase motor protein [Mycobacterium gilvum
           PYR-GCK]
 gi|315444739|ref|YP_004077618.1| Holliday junction DNA helicase, Ruvsubunit alpha [Mycobacterium sp.
           Spyr1]
 gi|189045758|sp|A4TBQ6|RUVA_MYCGI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|145216893|gb|ABP46297.1| DNA recombination protein RuvA, domain I [Mycobacterium gilvum
           PYR-GCK]
 gi|315263042|gb|ADT99783.1| Holliday junction DNA helicase, RuvA subunit [Mycobacterium sp.
           Spyr1]
          Length = 195

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 82/205 (40%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+V+I+  GV Y +     TL+ L + G    L     +R+D   L
Sbjct: 1   MIASVRGEVLDIALDHVVIEAAGVGYKVMATPATLATL-RRGSEARLITAMIVREDSQTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F+ L  V G+G  +A+G L+      L ++I   +   + +IP +  K 
Sbjct: 60  YGFADSDARDLFLTLLGVSGIGPSIALGALAMYDGPTLRQAIGDGDLTALTRIPKVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A  +   L+ K                                + ALV LG+   QA  A
Sbjct: 120 AELLALTLRDKV-----------GSSTSSGVAAAGGHGIRGPVVEALVGLGFAVKQAEEA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              VL  +   A  S  +R AL  +
Sbjct: 169 TDKVLANDPE-ATTSSALRAALSML 192


>gi|148244503|ref|YP_001219197.1| holliday junction DNA helicase RuvA [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326330|dbj|BAF61473.1| holliday junction DNA helicase RuvA [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 202

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 49/203 (24%), Positives = 95/203 (46%), Gaps = 9/203 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G I       +L++V  + Y I C + +   +G   +  +L+    ++++   L
Sbjct: 3   MIGKLSGTILEKNPPEILLEVDKIGYEILCSMSSFYAMGDE-EQLSLYTHLSIKENAHIL 61

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+S  ++  F  L  + G+G +VA+ +LS +    L++ I   N  ++A+ PGI +K 
Sbjct: 62  YGFISKDEKTLFRELIRINGIGPKVALAILSHLDINSLIKVITDGNDTLLAKTPGIGIKT 121

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK +   L    +   +   K              A +AL  LG+   ++   
Sbjct: 122 AQKLIVELKDRLEKLKLNNENHKNIHIKF-----KKNPNIKQASAALQALGFKARESEKM 176

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           +  +   + N      +IR AL+
Sbjct: 177 LSVI---KDNSLSTKALIRQALQ 196


>gi|194476717|ref|YP_002048896.1| putative holliday junction DNA helicase RuvA [Paulinella
           chromatophora]
 gi|171191724|gb|ACB42686.1| putative holliday junction DNA helicase RuvA [Paulinella
           chromatophora]
          Length = 215

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 97/212 (45%), Gaps = 7/212 (3%)

Query: 1   MIGKIKGNIEGLYE----DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MI  ++G +   ++    +  L++  G+ Y +Y   R    L K  +   L++   +R+ 
Sbjct: 1   MISWLRGELLKSWQQGTYNVALLNCGGIGYEVYLNRRDWEDLPKTREILELYIHMLVREK 60

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
           Q  L+GF+   DR  F  + ++ G+G ++A+ + + +    L+E+II  +   + +  GI
Sbjct: 61  QWTLYGFIEFDDRDIFREIININGIGPQLALALQTELRGPRLIEAIINGDLVTLTKAHGI 120

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             + A R+ TEL+ + ++L    +  +      Q  + +      +  + L  LGY + +
Sbjct: 121 GRRTAERLSTELRSRFVNLYHTNEVYLKQEGSIQG-VLNDSDLVHDIQNTLKTLGYNKLE 179

Query: 177 ATTAVVSVLKKEK--NIADDSQIIRLALRAIS 206
              A+  +  K      +D    +R AL  +S
Sbjct: 180 IQRAINKLKSKSSLVENSDFDVWLREALHWLS 211


>gi|195978973|ref|YP_002124217.1| Holliday junction DNA helicase RuvA [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|229560129|sp|B4U0J5|RUVA_STREM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|195975678|gb|ACG63204.1| Holliday junction DNA helicase RuvA [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 198

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 88/205 (42%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ Y+I       S    +    T+++   +R+D   L
Sbjct: 1   MYDYIKGQLTKITAKYIVVEANGLGYMITV-ANPYSFTDCVNQQVTIYLHQVIREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S+ ++  F+ L SV G+G   A+ +++      LV +I   +   + + P I  K 
Sbjct: 60  FGFHSEEEKDVFLKLISVSGIGPTTALAIVAVDDNRGLVNAIDNSDITYLMRFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK       V+      +K              AI AL+ LGY   +    
Sbjct: 120 AQQMVLDLAGKF------VEAPKEESSKLPKAKHQENEQLDEAIEALLALGYKATELKK- 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +    E       Q I+ AL+ +
Sbjct: 173 IRAFF--EGTSETAEQYIKSALKML 195


>gi|297195496|ref|ZP_06912894.1| Holliday junction DNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197722111|gb|EDY66019.1| Holliday junction DNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 202

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 58/209 (27%), Positives = 99/209 (47%), Gaps = 13/209 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L     +I+V G+   + C   TLS L +IG    L     +R+D + L
Sbjct: 1   MIAFVSGPVAALAPTTAVIEVGGIGMAVQCTPNTLSGL-RIGQEAKLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+  +   L  ++   + K +  +PGI  K 
Sbjct: 60  YGFADDDERQVFELLQTASGVGPRLAQAMLAVHSPDALRLAVATGDEKALTAVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK +            + V++         S+     +AL+ LGY   +A  A
Sbjct: 120 AQKLLLELKDRLGEPLGTGPAVGAPVSR---------SWRDQLHAALIGLGYATREADEA 170

Query: 181 VVSV---LKKEKNIADDSQIIRLALRAIS 206
           V +V    +      +   ++R AL+++S
Sbjct: 171 VAAVAPQAEAMGAAPEVGPLLRAALQSLS 199


>gi|290581353|ref|YP_003485745.1| putative Holliday junction DNA helicase [Streptococcus mutans
           NN2025]
 gi|254998252|dbj|BAH88853.1| putative Holliday junction DNA helicase [Streptococcus mutans
           NN2025]
          Length = 198

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 96/206 (46%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKGN+  +   Y++++  G+ Y+I       S   +I     +++   +R+D   L
Sbjct: 2   MYDYIKGNLTKITAKYIVLEAGGLGYVINV-ANPYSFSNQINQAIQIYIHHVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++  F+ L SV G+G   A+ +++      LV++I   +   + + P I  K 
Sbjct: 61  YGFHTEDEKAVFLNLISVSGIGPTSALAIIAADDNEGLVKAIDHSDVNYLMKFPKIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK + ++ V        +K +    +       A+ AL+ LGY  ++    
Sbjct: 121 AQQMVLDLAGKFVDINEV------STDKSKVSTINNNQELEEAVEALLALGYKTNE---- 170

Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205
           +  + K  +   D     I+ AL+ +
Sbjct: 171 LKKIEKFFEGTTDTAENYIKSALKML 196


>gi|268317861|ref|YP_003291580.1| Holliday junction DNA helicase RuvA [Rhodothermus marinus DSM 4252]
 gi|262335395|gb|ACY49192.1| Holliday junction DNA helicase RuvA [Rhodothermus marinus DSM 4252]
          Length = 200

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 49/204 (24%), Positives = 93/204 (45%), Gaps = 7/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +       V++DV G+ Y +  P  T   L ++G    L    ++R+D + L
Sbjct: 1   MIAYVSGKLAVKKLTEVVVDVHGLGYRLLIPTSTYEVLPEVGAPVHLLTHYYVREDAVLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +R  F +L  V GVG R+A+  LS ++  ++ E++   + + + +IPG+  ++
Sbjct: 61  FGFATEAERALFEVLLGVSGVGPRLALAALSALSPAQIHEAVTTGDVQTLKRIPGVGQRL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +   L           +          +               +  A  +
Sbjct: 121 AERLIVELRDRLALLDLAELTPAGVDDVRAQARVDALAALEALGL-------PRAAAERS 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           +  VL++   I    ++IRLALR 
Sbjct: 174 LRKVLREHPGIQSAEELIRLALRE 197


>gi|325661158|ref|ZP_08149785.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472665|gb|EGC75876.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 200

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 106/205 (51%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +  + E+ V+++VQG+ Y I+ P + ++ L  IG    +    ++R+D ++L
Sbjct: 1   MISYIKGELAAVGEEQVVVEVQGIGYGIFMPGQAMTMLPPIGSEVKIHTYLNVREDAMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  D + F LL  V G+G +  + +LS++T  +L  +++  + K I+  PGI  K 
Sbjct: 61  FGFLTKDDLKVFRLLIGVNGIGPKGGLNILSKMTPDDLRFAVLAGDVKAISAAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK K       +   ++   +  +           A+ ALV LGYG  ++  A
Sbjct: 121 AEKLIIELKDKL-----NIDDVLTKEEEVMSVPSGGADMQSEAVQALVALGYGSAESLKA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V           ++++ +L+ +
Sbjct: 176 VKKV--PMTETMTVEELLKQSLKFM 198


>gi|302389938|ref|YP_003825759.1| Holliday junction DNA helicase RuvA [Thermosediminibacter oceani
           DSM 16646]
 gi|302200566|gb|ADL08136.1| Holliday junction DNA helicase RuvA [Thermosediminibacter oceani
           DSM 16646]
          Length = 192

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 52/207 (25%), Positives = 92/207 (44%), Gaps = 17/207 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKI-GDFCTLFVETHMRQDQIR 59
           M+  I+G +  +  ++ ++DV G+ +  +  + T + +  +      LF   H++++   
Sbjct: 1   MLDYIRGRLRDIGPNFAILDVAGLGFRCFISLNTYNKIKLLKNSKVLLFTCLHVKEEGAE 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF    +R+ F+LL  V GVG RVA+ +LS +    L   I+ ++ K +  +PGI  K
Sbjct: 61  LFGFSELHEREAFILLNKVSGVGPRVALSILSWLEPKRLKSVIMSEDVKTLTSVPGIGNK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +I+ ELK K  +L                           A  AL+ LG+   +   
Sbjct: 121 TAQKIIFELKDKIKNLPVETVSQTEQAALC------------EARDALLALGFSIGEVQR 168

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
            +  +           +II  ALR I+
Sbjct: 169 VLNEI----GTATTVEEIISNALRLIA 191


>gi|223933912|ref|ZP_03625874.1| Holliday junction DNA helicase RuvA [Streptococcus suis 89/1591]
 gi|302023155|ref|ZP_07248366.1| Holliday junction DNA helicase RuvA [Streptococcus suis 05HAS68]
 gi|330831910|ref|YP_004400735.1| Holliday junction DNA helicase RuvA [Streptococcus suis ST3]
 gi|223897414|gb|EEF63813.1| Holliday junction DNA helicase RuvA [Streptococcus suis 89/1591]
 gi|329306133|gb|AEB80549.1| Holliday junction DNA helicase RuvA [Streptococcus suis ST3]
          Length = 196

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 91/205 (44%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++ QGV YI+       +  G++    T++    +R+D   L
Sbjct: 1   MYDYIKGILTKITAKYIVVETQGVGYILQV-ANPYAYSGQVQQEVTVYTHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++  F+ L SV G+G   A+ +++      LV +I  +N   + + P I  K 
Sbjct: 60  YGFATENEKSVFLSLISVSGIGPTTALAIIAVDDNDGLVRAIEQKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +               +Q    S       A+ A+  LGY   +    
Sbjct: 120 AQQMILDLEGKFV-------MSEEAGPVQQVAPSSENIALDEAMEAMEALGYRPAELKK- 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +    +   + A     I+ AL+ +
Sbjct: 172 IKKFFEGTNDTA--ENYIKSALKML 194


>gi|329767086|ref|ZP_08258614.1| Holliday junction DNA helicase RuvA [Gemella haemolysans M341]
 gi|328837811|gb|EGF87436.1| Holliday junction DNA helicase RuvA [Gemella haemolysans M341]
          Length = 193

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 95/205 (46%), Gaps = 15/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG I  +    +++D  G+ Y +         L    +   +F+   +R+D   L
Sbjct: 1   MYAYIKGKISEINPTNIVVDNNGIGYEVVVANPYEYQL---NEEKIVFISQQVREDSNIL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +   ++ F+LL  V+GVG + A+ +L+  T+ E++ +I  Q+   + + PGI  K 
Sbjct: 58  YGFSNKDQKKVFLLLLKVKGVGPKSALAILAGGTSEEIIGAIENQDVNYLTKFPGIGKKS 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +L+GK              +    +   ++ ++  +A+ AL  LGY + + T  
Sbjct: 118 AQQIILDLQGKVD----------FSMTNISSAPTAVNNYLSDAMLALEALGYSKKELTKI 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +     + A   + ++  L+ +
Sbjct: 168 EKKLSA--FDFAGVDEYVKQGLKLL 190


>gi|307564556|ref|ZP_07627096.1| Holliday junction DNA helicase RuvA [Prevotella amnii CRIS 21A-A]
 gi|307346714|gb|EFN92011.1| Holliday junction DNA helicase RuvA [Prevotella amnii CRIS 21A-A]
          Length = 205

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 60/208 (28%), Positives = 97/208 (46%), Gaps = 7/208 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM---RQDQ 57
           MI  IKG +  +     +++  G+ Y I   + T S +    D      E  +   R D 
Sbjct: 1   MIEYIKGELIEMTPAIAIVEAYGIGYAINISLNTYSDIQGKKDIKLYIYEAIITGGRDDS 60

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
             L+GF S  +R  + LL +V GVGA  A  +LS  T +EL   I     +++  + GI 
Sbjct: 61  YTLYGFSSKQERSLYKLLITVSGVGANTARMILSSFTPSELCNVISNGEERMLKSVKGIG 120

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           +K A RI+ +L+ K I      +     VN    ++    +    AISAL  LG+    +
Sbjct: 121 LKTAQRIIVDLRDKIIQADIANEL---YVNTSSNNLNIDTAVKDEAISALTMLGFSPVSS 177

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
           +  V+ VL K+ N+    Q+++ AL+ I
Sbjct: 178 SKVVIEVLTKDANLP-VEQVVKQALKII 204


>gi|254383613|ref|ZP_04998963.1| holliday junction ATP-dependent DNA helicase ruvA [Streptomyces sp.
           Mg1]
 gi|194342508|gb|EDX23474.1| holliday junction ATP-dependent DNA helicase ruvA [Streptomyces sp.
           Mg1]
          Length = 210

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 54/212 (25%), Positives = 95/212 (44%), Gaps = 11/212 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L     +I+V GV   + C   T++ L ++G+   L     +R+D + L
Sbjct: 1   MIAFVSGPVAALAPTLAVIEVGGVGMAVQCTPNTIAAL-RVGEPARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L   +   L  ++   + + +  +PGI  K 
Sbjct: 60  YGFADDDERQVFELLQTASGVGPRLAQAMLGVHSPDALRLAVESGDERALTAVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ E                  V  ++A       +     +AL+ LGY    A  A
Sbjct: 120 AQKLLLE----LKGKLGAPLGSSGLVGAQRAAAAGPAPWTEQLSAALIGLGYASRDAEEA 175

Query: 181 VVSVLKK------EKNIADDSQIIRLALRAIS 206
           V +V  +          A   Q++R AL++++
Sbjct: 176 VSAVTPQAEAAIAAGGSAPVPQLLRAALQSLN 207


>gi|300868186|ref|ZP_07112818.1| Holliday junction ATP-dependent DNA helicase ruvA [Oscillatoria sp.
           PCC 6506]
 gi|300333810|emb|CBN58002.1| Holliday junction ATP-dependent DNA helicase ruvA [Oscillatoria sp.
           PCC 6506]
          Length = 207

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 49/212 (23%), Positives = 98/212 (46%), Gaps = 12/212 (5%)

Query: 1   MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MI  +KG +  + +      ++++V  + Y +    R    L  +G+   +F    +++D
Sbjct: 1   MINYLKGTVADIQKGNNRVMLILEVNQIGYEVQILPRMTGQLPAMGEVVQVFTHQQVKED 60

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
           Q+ L+GF+S  +R  F  L SV G+GA++A+ +L  +   +LV++I+  N++++A+ PG+
Sbjct: 61  QMVLYGFISGAERNLFRQLVSVSGIGAQLAIALLETLGLQDLVQAIVGGNTRILAKTPGV 120

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             K A R++ EL+ K     +      S                      L+ LGY   +
Sbjct: 121 GNKTAERLVLELRTKLSEWRNQEGLSTS------VPAGVSSVIQEEVEMTLLALGYTGAE 174

Query: 177 ATTAVVSVLKK--EKNIADDSQIIRLALRAIS 206
              A+ ++ +        +    IR A+  +S
Sbjct: 175 VMQALQALSQDPSLLKKGNAEDWIREAIAWLS 206


>gi|311113689|ref|YP_003984911.1| crossover junction ATP-dependent DNA helicase RuvA [Rothia
           dentocariosa ATCC 17931]
 gi|310945183|gb|ADP41477.1| crossover junction ATP-dependent DNA helicase RuvA [Rothia
           dentocariosa ATCC 17931]
          Length = 206

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 58/203 (28%), Positives = 101/203 (49%), Gaps = 12/203 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G++  +  +  ++DV G   ++    RTLS L + G   TL     +R+D + L
Sbjct: 1   MIASLTGHVTHVGLESAILDVNGFGMLVRATARTLSNL-RTGSTATLLTSMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F ++ SV G+G R+A+ VLS  TATE+  ++   + K   ++PGI  K 
Sbjct: 60  YGFAEPAEREVFEMMLSVSGIGPRIALAVLSVHTATEVERAVATGDDKAFTKVPGIGPKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL GK I         +S    E+       ++    + AL +LG+ +  A  A
Sbjct: 120 ARRIVLELAGKLI---------LSKDQAEENAPAQGIAWKPQVMDALTSLGWSEKDADAA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           + + ++   +     + +  ALR
Sbjct: 171 IDAYVQHNPDAEK--EAVSAALR 191


>gi|304320107|ref|YP_003853750.1| Holliday junction DNA helicase RuvA [Parvularcula bermudensis
           HTCC2503]
 gi|303299010|gb|ADM08609.1| Holliday junction DNA helicase RuvA [Parvularcula bermudensis
           HTCC2503]
          Length = 202

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 106/206 (51%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L  +  +IDV GV Y +    R LS L + G    L  ET + +  IRL
Sbjct: 1   MIAALHGTVSVLSGENAIIDVNGVGYEVAATPRLLSSLAQ-GQEVRLITETLVAETYIRL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
             F +  +R  F LLQ+VQGVGA+ A+ +LS +T  +L +++   +  ++A+  G+  K+
Sbjct: 60  VAFQTIEERLTFRLLQTVQGVGAKAALAILSALTPADLFDAVEAGDKAMVARAQGVGPKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+TELKGK      +V    +  +       ++ S A +A++ALV LG+    A   
Sbjct: 120 ALRIVTELKGKC---GGIVGAFPAVASPRATSAAAVDSPAEDAVAALVALGFDHGAARRT 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + ++   +   +    +I   L+ ++
Sbjct: 177 ISTL--PDLETSRTEDLITAGLKTLA 200


>gi|229817634|ref|ZP_04447916.1| hypothetical protein BIFANG_02904 [Bifidobacterium angulatum DSM
           20098]
 gi|229785423|gb|EEP21537.1| hypothetical protein BIFANG_02904 [Bifidobacterium angulatum DSM
           20098]
          Length = 205

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 60/210 (28%), Positives = 102/210 (48%), Gaps = 14/210 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +E +     +I+V  V Y +  P   LS L   G    ++   ++ QD I L
Sbjct: 1   MIGSLRGTVEMVDTTQAVIEVGSVGYEVRMPSADLSRL-HTGQETRVWTYLNVSQDAITL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL    ++ F+ L  V GVG +VA+ +LS +TA +L +++   ++  +A+ PGI  K 
Sbjct: 60  YGFLDSSSKKMFLQLIKVNGVGPKVALSLLSTLTANDLAKAVADNDATALAKAPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELKG         +   S  + +          A   +  L++LG+ Q  A  A
Sbjct: 120 AQKIILELKGSINLEDLGEKAPQSGASTDPG--------AKQVVEGLMSLGWHQQDAQYA 171

Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205
           V    +        +  D  Q++RLAL ++
Sbjct: 172 VQEACESNGIAMPLSQEDVPQVLRLALTSL 201


>gi|270290977|ref|ZP_06197200.1| Holliday junction DNA helicase RuvA [Pediococcus acidilactici 7_4]
 gi|304385248|ref|ZP_07367593.1| crossover junction ATP-dependent DNA helicase RuvA [Pediococcus
           acidilactici DSM 20284]
 gi|270280373|gb|EFA26208.1| Holliday junction DNA helicase RuvA [Pediococcus acidilactici 7_4]
 gi|304328455|gb|EFL95676.1| crossover junction ATP-dependent DNA helicase RuvA [Pediococcus
           acidilactici DSM 20284]
          Length = 195

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 81/205 (39%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +  +   Y++IDV GV Y++       S           +V   + + +  L
Sbjct: 1   MYEYLNGVVVDINPAYIVIDVNGVGYLVNV-ANPYSFKPDEKQKV--YVHQAVSETENTL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF   +D++ F+ L  V+G+G + A+ +L+       + ++   +   + + P I  K 
Sbjct: 58  YGFKKYVDKELFLNLLKVKGIGPKSALAILANDDHQGFIRAVNNDDVNYLKKFPKIGPKA 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK                       +  +    AI AL  LGY + +    
Sbjct: 118 AKQIILDLKGKI--------TSNEPSGPLFEMPTTTNNTLDEAIEALAALGYSERELKKI 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +   E +     Q I   L+ +
Sbjct: 170 TPKL--DELSNQTTDQYISAGLKLL 192


>gi|221632653|ref|YP_002521874.1| Holliday junction DNA helicase RuvA [Thermomicrobium roseum DSM
           5159]
 gi|254767395|sp|B9KYT2|RUVA_THERP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|221156321|gb|ACM05448.1| Holliday junction DNA helicase RuvA [Thermomicrobium roseum DSM
           5159]
          Length = 191

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 99/206 (48%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +       VL+DVQGV + +     TL  LG+ GD  +L     +R+D++ L
Sbjct: 1   MIRGVRGTLVAKRSGEVLVDVQGVTFRVQTSATTLQELGEPGDLVSLVTHLIVREDELAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ + + F+ L +V GVG R A+ +LS      L E I  +  + +A+ PGI  K 
Sbjct: 61  YGFATEAELELFLSLLAVSGVGPRGALNLLSLAAPDRLTEWIRGERIEELARAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ EL+G+  +L+ V   +                     ++AL  LGY   +A  A
Sbjct: 121 ASRIVLELRGRLPALTEVQAGE---------------PIDQELVAALQALGYTAQEARQA 165

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
                 + +      + I  ALR ++
Sbjct: 166 ATH--PEVRRAPSLEERIVAALRQLA 189


>gi|289425381|ref|ZP_06427158.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes SK187]
 gi|289428316|ref|ZP_06430003.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes J165]
 gi|295130717|ref|YP_003581380.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes SK137]
 gi|289154359|gb|EFD03047.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes SK187]
 gi|289158465|gb|EFD06681.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes J165]
 gi|291375923|gb|ADD99777.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes SK137]
 gi|332675562|gb|AEE72378.1| holliday junction ATP-dependent DNA helicase RuvA
           [Propionibacterium acnes 266]
          Length = 201

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 53/208 (25%), Positives = 97/208 (46%), Gaps = 10/208 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI    G +      +V++D  GV   + CP  T +   +I    +L     +R++ + L
Sbjct: 1   MISHFSGMVSAAGPTWVVLDNHGVGIKVLCPPATAAS-ARINQDMSLHTSLVVREESLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   DR  F L+Q+  GVG ++A  ++S + A +L  +I  ++   + ++PGI  K 
Sbjct: 60  YGFVEADDRDAFELVQTASGVGPKLAAAIMSVLDAAQLATAITEEDDATLCRVPGIGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A++++ ELK K  +L+          +        +  +       LV LG+    A  A
Sbjct: 120 AAKMILELKDKVAALTPRGASVSGATH-------VVAPWREQVAEGLVGLGWSAKDAEKA 172

Query: 181 VVSV--LKKEKNIADDSQIIRLALRAIS 206
           V  V  LK+         ++R ALR+++
Sbjct: 173 VDKVAALKEADPAMTIGNLMRAALRSLA 200


>gi|223986042|ref|ZP_03636071.1| hypothetical protein HOLDEFILI_03377 [Holdemania filiformis DSM
           12042]
 gi|223961992|gb|EEF66475.1| hypothetical protein HOLDEFILI_03377 [Holdemania filiformis DSM
           12042]
          Length = 193

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 102/205 (49%), Gaps = 19/205 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +  +  D+++I+ QG+ Y ++        L        +F   H+R+D+  L
Sbjct: 1   MIAMIKGTVFAVGLDWIIIENQGIGYKVFFSRPEAVRL---NQEVRVFTYQHVREDEFSL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLS  ++  F+ L SV+G+G + AM +L+  T  ++V+ I   +   + ++PGI  K 
Sbjct: 58  FGFLSMEEQDLFVKLISVKGLGPKTAMNMLAAATYQQMVQMIEQGDVAALKKMPGIGAKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK +               E+           +A+ AL  LGY Q + +  
Sbjct: 118 ASQIILDLKGKLVR--------------EETAEGKSSQAIEDALEALKALGYKQSELSG- 162

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  V+++  +     + ++L L+ +
Sbjct: 163 LSKVMREHPD-KTTDEYVKLGLQHL 186


>gi|255327194|ref|ZP_05368269.1| holliday junction DNA helicase RuvA [Rothia mucilaginosa ATCC
           25296]
 gi|255295812|gb|EET75154.1| holliday junction DNA helicase RuvA [Rothia mucilaginosa ATCC
           25296]
          Length = 206

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 55/207 (26%), Positives = 102/207 (49%), Gaps = 12/207 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +  D+ +I+V G   ++Y   RTLS L + G+  T+     +R++ + L
Sbjct: 1   MIASLTGRVAQVGLDHAVINVNGFGMLVYATARTLSKL-RTGEEATVLTTMIVREESMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F ++ SV G+G R+A+ VLS  TA E+  ++   + K   ++PGI  K 
Sbjct: 60  YGFSEPAEREVFDMMLSVSGIGPRIALAVLSVHTAAEVERAVATGDDKAFTKVPGIGPKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL GK I         +S    ++  +     +    + AL +LG+ +  A+ A
Sbjct: 120 ARRIVLELAGKLI---------LSDGQTDELPLSQGIVWKPQVLDALTSLGWSEKDASAA 170

Query: 181 VVSVLKKEKNIAD--DSQIIRLALRAI 205
           + + ++             +R  L ++
Sbjct: 171 IDAYVQHNPAAETEPVGVALRGVLASL 197


>gi|77408136|ref|ZP_00784882.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae COH1]
 gi|77173236|gb|EAO76359.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae COH1]
          Length = 196

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 92/205 (44%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   +++++  G+ Y+IY      S  G +    T+++   +R D   L
Sbjct: 1   MYDYIKGKLSKITAKFIVVETAGLGYVIYV-ANPYSFSGYVNQEVTIYLHQVIRDDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +++ F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTENEKEIFLNLISVSGIGPTTALAIIAVDDNEGLVSAIDNSDIKYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK +  S          +++        S    A+ AL+ LGY   +    
Sbjct: 120 AQQMILDLSGKFVEASGESATSRKVSSEQ-------NSNLEEAMEALLALGYKATELKKV 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
                 +  N     Q I+ +L+ +
Sbjct: 173 --KAFFEGTND-TVEQYIKSSLKML 194


>gi|317485564|ref|ZP_07944441.1| Holliday junction DNA helicase RuvA [Bilophila wadsworthia 3_1_6]
 gi|316923244|gb|EFV44453.1| Holliday junction DNA helicase RuvA [Bilophila wadsworthia 3_1_6]
          Length = 203

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/196 (26%), Positives = 90/196 (45%), Gaps = 9/196 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I+G +  +  +  ++    GV Y +Y P +T   L + G     ++   +R+D   
Sbjct: 1   MIAYIEGRLAEVCANACVVVTEGGVGYEVYLPQQTRLQLPERGGHVRFYICHIVREDAQE 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF +  +RQ F++L S+  VGAR A+G+LS     +L   ++  +   + Q+ GI  K
Sbjct: 61  LFGFETWDERQTFIVLTSISKVGARTALGILSAFRPDDLRRLVLEDDVLALTQVSGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A  I  ELK K           +         +    S   +A++ L  LGY + +A  
Sbjct: 121 SAQHIFLELKYKLKVEDMPAAASL--------QLGVPGSVYRDALTGLEGLGYAEAEAAP 172

Query: 180 AVVSVLKKEKNIADDS 195
            + ++L +E ++    
Sbjct: 173 VLKNILHEEPDLEVSE 188


>gi|146317720|ref|YP_001197432.1| Holliday junction DNA helicase RuvA [Streptococcus suis 05ZYH33]
 gi|146319910|ref|YP_001199621.1| Holliday junction DNA helicase RuvA [Streptococcus suis 98HAH33]
 gi|253750976|ref|YP_003024117.1| Holliday junction DNA helicase RuvA [Streptococcus suis SC84]
 gi|253752876|ref|YP_003026016.1| Holliday junction DNA helicase RuvA [Streptococcus suis P1/7]
 gi|253754701|ref|YP_003027841.1| Holliday junction DNA helicase RuvA [Streptococcus suis BM407]
 gi|166231447|sp|A4VYN2|RUVA_STRS2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166231449|sp|A4VSE3|RUVA_STRSY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|145688526|gb|ABP89032.1| Holliday junction resolvasome, DNA-binding subunit [Streptococcus
           suis 05ZYH33]
 gi|145690716|gb|ABP91221.1| Holliday junction resolvasome, DNA-binding subunit [Streptococcus
           suis 98HAH33]
 gi|251815265|emb|CAZ50830.1| Holliday junction DNA helicase RuvA [Streptococcus suis SC84]
 gi|251817165|emb|CAZ54886.1| Holliday junction DNA helicase RuvA [Streptococcus suis BM407]
 gi|251819121|emb|CAR44199.1| Holliday junction DNA helicase RuvA [Streptococcus suis P1/7]
 gi|292557520|gb|ADE30521.1| Holliday junction DNA helicase RuvA [Streptococcus suis GZ1]
 gi|319757228|gb|ADV69170.1| Holliday junction DNA helicase RuvA [Streptococcus suis JS14]
          Length = 196

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 91/205 (44%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++ QGV YI+       +  G++    T++    +R+D   L
Sbjct: 1   MYDYIKGILTKITAKYIVVETQGVGYILQV-ANPYAYSGQVQQEVTVYTHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++  F+ L SV G+G   A+ +++      LV +I  +N   + + P I  K 
Sbjct: 60  YGFATENEKSVFLSLISVSGIGPTTALAIIAVDDNDGLVRAIEQKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +               +Q    S       A+ A+  LGY   +    
Sbjct: 120 AQQMILDLEGKFV-------MSEEAGPVQQVAPSSENIALEEAMEAMEALGYRPAELKK- 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +    +   + A     I+ AL+ +
Sbjct: 172 IKKFFEGTNDTA--ENYIKSALKML 194


>gi|120403560|ref|YP_953389.1| Holliday junction DNA helicase RuvA [Mycobacterium vanbaalenii
           PYR-1]
 gi|166230573|sp|A1T883|RUVA_MYCVP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|119956378|gb|ABM13383.1| DNA recombination protein RuvA, domain I [Mycobacterium vanbaalenii
           PYR-1]
          Length = 195

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+V+I+  GV Y +     TL+ L + G    L     +R+D + L
Sbjct: 1   MIAAVRGEVLDIALDHVVIEAAGVGYKVMATPATLATL-RRGAEARLITAMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F+ L  V G+G  +A+G L+      L ++I   +   + +IP +  K 
Sbjct: 60  YGFADSDARNLFLTLLGVSGIGPSIALGALAMYDGPTLRQAIGDGDVTALTRIPKVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A  ++  L+ K  + +S                          + ALV LG+ Q QA  A
Sbjct: 120 AELLVLTLRDKVGTSTSAGVASAGGHGIRGP-----------VVEALVGLGFAQKQAEEA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              VL  E   A  S  +R AL  +
Sbjct: 169 TDKVLANEPE-ATTSSALRAALSML 192


>gi|320160780|ref|YP_004174004.1| Holliday junction ATP-dependent DNA helicase RuvA [Anaerolinea
           thermophila UNI-1]
 gi|319994633|dbj|BAJ63404.1| Holliday junction ATP-dependent DNA helicase RuvA [Anaerolinea
           thermophila UNI-1]
          Length = 191

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 108/206 (52%), Gaps = 16/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  L E Y++I V  V   ++ P  TL    + G+   LF    +R+D + L
Sbjct: 1   MIAYVEGKVLELGETYLVIQVGAVGLQVFVP-STLRAKARAGETLVLFTYLVVREDLMAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + L+R++F LL  V G+G R+A+ +LS ++   +  +I+ +  +V++++PG+  K 
Sbjct: 60  YGFETPLEREFFGLLLGVNGIGPRLAISILSVLSVDAIRRAILSEQPEVLSRVPGVGRKN 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+  L+GK  +      + M+ V+                + AL +LGY   +A TA
Sbjct: 120 AQKIILSLQGKVTAEGLEGVRPMAEVD-------------QEVLEALTSLGYSVVEAQTA 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V S+ K      D  + ++LALR  S
Sbjct: 167 VQSIPKDAP--MDLEERLKLALRYFS 190


>gi|310816584|ref|YP_003964548.1| Holliday junction DNA helicase motor protein [Ketogulonicigenium
           vulgare Y25]
 gi|308755319|gb|ADO43248.1| Holliday junction DNA helicase motor protein [Ketogulonicigenium
           vulgare Y25]
          Length = 218

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 62/186 (33%), Positives = 98/186 (52%), Gaps = 10/186 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G I     D +L+DV+GV YII+   R ++ L  +G+   L+ +  +R+D ++L
Sbjct: 1   MIGWLSGRIIEKSGDQILLDVRGVGYIIHVSDRVMASLPGVGEAVALYTDLLVREDLMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  +++W  LL  VQGVGA+ A+ ++  +    L  ++ L +   IA+  GI  K 
Sbjct: 61  FGFTSRTEKEWHKLLMGVQGVGAKAALAIMGALGGDGLSRALALGDWSSIAKAKGIGPKT 120

Query: 121 ASRIMTELKGKAI----------SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL 170
           A R++ ELKGKA           SL +V++ D             + +   +A+SAL NL
Sbjct: 121 AQRVVMELKGKAPTVMAMSGGAESLDAVIEDDGPAPKPAARRARPVSNAQPDALSALGNL 180

Query: 171 GYGQDQ 176
           GY    
Sbjct: 181 GYSPSD 186


>gi|284048863|ref|YP_003399202.1| Holliday junction DNA helicase RuvA [Acidaminococcus fermentans DSM
           20731]
 gi|283953084|gb|ADB47887.1| Holliday junction DNA helicase RuvA [Acidaminococcus fermentans DSM
           20731]
          Length = 204

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/206 (24%), Positives = 98/206 (47%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG I G ++ +  ++ L+D QGV Y I+     LS + ++     ++    +R+D ++L
Sbjct: 1   MIGFITGRVDHIGTNFCLVDTQGVGYRIFLNTGDLSRI-QVDQKVKIYTYLSVREDALQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLS      F  L +V G+G +VA G+LS         ++  ++ K + ++PGI  K 
Sbjct: 60  FGFLSYDAYSLFTQLITVSGIGPKVAQGILSAAKVDAFYLAVKSRDLKFLTKLPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK   ++    ++++ +    +        +        L  LGY Q +    
Sbjct: 120 AERLLLELKD--MTGPEGLEEEGTAGGFDGDVPEDDTTTLGAVAEGLSYLGYTQGEIAQV 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +     + A    +++ ALR ++
Sbjct: 178 LKKLKVTADSRA--EDLLKEALRLLA 201


>gi|22538230|ref|NP_689081.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae
           2603V/R]
 gi|25012088|ref|NP_736483.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae
           NEM316]
 gi|76799561|ref|ZP_00781690.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae
           18RS21]
 gi|77414038|ref|ZP_00790209.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae 515]
 gi|44888490|sp|Q8DWW6|RUVA_STRA5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|44888493|sp|Q8E2R7|RUVA_STRA3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|22535142|gb|AAN00954.1|AE014286_17 Holliday junction DNA helicase RuvA [Streptococcus agalactiae
           2603V/R]
 gi|24413632|emb|CAD47709.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76585090|gb|EAO61719.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae
           18RS21]
 gi|77159920|gb|EAO71060.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae 515]
          Length = 196

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 91/205 (44%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   +++++  G+ Y+IY      S  G +    T+++   +R D   L
Sbjct: 1   MYDYIKGKLSKITAKFIVVETAGLGYMIYV-ANPYSFSGYVNQEVTIYLHQVIRDDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +++ F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTENEKEIFLNLISVSGIGPTTALAIIAVDDNEGLVSAIDNSDIKYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK +  S          +++        S    A+ AL+ LGY   +    
Sbjct: 120 AQQMILDLSGKFVEASGESATSRKVSSEQ-------NSNLEEAMEALLALGYKATELKKV 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
                  E       Q I+ +L+ +
Sbjct: 173 ---KAFFEGTNETVEQYIKSSLKML 194


>gi|331085084|ref|ZP_08334171.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408784|gb|EGG88249.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 200

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 106/205 (51%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +  + E+ V+++VQG+ Y I+ P + ++ L  IG    +    ++R+D ++L
Sbjct: 1   MISYIKGELAAVGEEQVVVEVQGIGYGIFMPGQAMTMLPPIGSEVKIHTYLNVREDAMQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  D + F LL  V G+G +  + +LS++T  +L  +++  + K I+  PGI  K 
Sbjct: 61  FGFLTKDDLKVFRLLIGVNGIGPKGGLNILSKMTPDDLRFAVLAGDVKAISAAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK K       +   ++   +  +           A+ ALV LGYG  ++  A
Sbjct: 121 AEKLIIELKDKL-----NIDDVLTKEEEVMSVPSGGADMQSEAVQALVALGYGSAESLKA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  V           ++++ +L+ +
Sbjct: 176 VKKV--PMTKTMTVEELLKQSLKFM 198


>gi|76787979|ref|YP_330625.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae A909]
 gi|77405120|ref|ZP_00782219.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae H36B]
 gi|77410868|ref|ZP_00787225.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae
           CJB111]
 gi|90135931|sp|Q3JYM8|RUVA_STRA1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|76563036|gb|ABA45620.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae A909]
 gi|77163086|gb|EAO74040.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae
           CJB111]
 gi|77176263|gb|EAO79033.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae H36B]
 gi|319745991|gb|EFV98273.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           agalactiae ATCC 13813]
          Length = 196

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 91/205 (44%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   +++++  G+ Y+IY      S  G +    T+++   +R D   L
Sbjct: 1   MYDYIKGKLSKITAKFIVVETAGLGYVIYV-ANPYSFSGYVNQEVTIYLHQVIRDDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +++ F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTENEKEIFLNLISVSGIGPTTALAIIAVDDNEGLVSAIDNSDIKYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK +  S          +++        S    A+ AL+ LGY   +    
Sbjct: 120 AQQMILDLSGKFVEASGESATSRKVSSEQ-------NSNLEEAMEALLALGYKATELKKV 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
                  E       Q I+ +L+ +
Sbjct: 173 ---KAFFEGTNETVEQYIKSSLKML 194


>gi|212704638|ref|ZP_03312766.1| hypothetical protein DESPIG_02701 [Desulfovibrio piger ATCC 29098]
 gi|212672037|gb|EEB32520.1| hypothetical protein DESPIG_02701 [Desulfovibrio piger ATCC 29098]
          Length = 203

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/192 (25%), Positives = 88/192 (45%), Gaps = 8/192 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  ++G +   +    ++    GV Y +  P  T++ L   G+   L+    +R+D  +
Sbjct: 1   MIAYLEGLLAETWGTSCIVVTRGGVGYELDLPAHTMASLPGRGESVALYTSLVVREDAQQ 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF +  +RQ F +L ++  VGAR A+ +LS     +L   ++ ++   + ++ GI  K
Sbjct: 61  LFGFATFEERQVFEVLLTISKVGARTALAILSLYRPDDLRRIVLEEDVDALTRVSGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A  +  ELK K          +        A      S   + +  L NLGY +D+   
Sbjct: 121 TAQHVFLELKYKLK-------VEDVPQAAVLAPNGRPGSVFRDVLDGLSNLGYSEDECAP 173

Query: 180 AVVSVLKKEKNI 191
            V ++L +E ++
Sbjct: 174 VVKNILLQEPDL 185


>gi|322377268|ref|ZP_08051760.1| holliday junction DNA helicase RuvA [Streptococcus sp. M334]
 gi|321281981|gb|EFX58989.1| holliday junction DNA helicase RuvA [Streptococcus sp. M334]
          Length = 197

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 97/206 (47%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++V G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYLKGIITRITAKYIVLEVNGIGYILHV-ANPYAYSGQVNQEAQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNINYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +     +   ++          +       A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVVAGDDLPAKVA------VQTSAENQELEEAMEAMLALGYKATE---- 169

Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205
           +  + K  +   D     I+ AL+ +
Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195


>gi|309799338|ref|ZP_07693581.1| holliday junction DNA helicase RuvA [Streptococcus infantis SK1302]
 gi|308117005|gb|EFO54438.1| holliday junction DNA helicase RuvA [Streptococcus infantis SK1302]
          Length = 197

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 97/206 (47%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYLKGIITKITAKYIVLEANGIGYILHV-ANPYAYSGRVNQEAQIYVHQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +     +    +  +       S       A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVVAGDDLPTKTAAPS------SSDNQELEEAMEAMLALGYKAAE---- 169

Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205
           +  + K  +  +D     I+ AL+ +
Sbjct: 170 LKKIKKFFEGTSDTAENYIKSALKML 195


>gi|229824009|ref|ZP_04450078.1| hypothetical protein GCWU000282_01313 [Catonella morbi ATCC 51271]
 gi|229786363|gb|EEP22477.1| hypothetical protein GCWU000282_01313 [Catonella morbi ATCC 51271]
          Length = 197

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 86/205 (41%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I+G +  +   +++I   GV Y + C        G++       VE  +R+D + L
Sbjct: 3   MYEFIQGELVQIQPLHLVISANGVGYRLLC-ANPYRWQGELHQQVLCPVELVVREDAMTL 61

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++Q F  L  V G+G + A+ +L+      L+++I   +S  + + PG+  K 
Sbjct: 62  YGFRDQQEKQLFNTLLKVSGIGPKSALSILALDDHVGLIQAIDSGDSTYLTKFPGVGKKT 121

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L G           D     + QA           A+ AL  LGY   +    
Sbjct: 122 AQQMILDLSGNL---------DFQAHAQTQASAPVSQQHLEEALEALAGLGYSAKEIKKV 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +  +E  +    +++  A + +
Sbjct: 173 EKPL--QEAGLNSTQEMLSAAFKLL 195


>gi|219849021|ref|YP_002463454.1| Holliday junction DNA helicase RuvA [Chloroflexus aggregans DSM
           9485]
 gi|254766951|sp|B8GCH4|RUVA_CHLAD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|219543280|gb|ACL25018.1| Holliday junction DNA helicase RuvA [Chloroflexus aggregans DSM
           9485]
          Length = 195

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 61/204 (29%), Positives = 95/204 (46%), Gaps = 13/204 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G I+ +  DY++++  G+ ++IY P  TLS  G +G    L     +R+D + L
Sbjct: 1   MIASIRGVIQSIGNDYLIVETGGIGFLIYAPRSTLSAAGAVGSDIFLHTILIVREDALTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  +  R  F  L  V GVG ++A+ +LS  T  E+   I   +   +A++PGI  K 
Sbjct: 61  YGFSDNAQRSLFEQLIGVSGVGPKLALSLLSSGTPDEVRSMIAGGDVARLARVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL+GK            S             +        LV+LGY   +A  A
Sbjct: 121 AERIVLELRGKIDFRQLAASGSTSV-----------SALDRELSEILVSLGYSAAEAAAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           + S+           + +RLALR 
Sbjct: 170 IASLPSDAPP--TLEERLRLALRY 191


>gi|114704960|ref|ZP_01437868.1| Holliday junction DNA helicase motor protein [Fulvimarina pelagi
           HTCC2506]
 gi|114539745|gb|EAU42865.1| Holliday junction DNA helicase motor protein [Fulvimarina pelagi
           HTCC2506]
          Length = 206

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 84/206 (40%), Positives = 137/206 (66%), Gaps = 1/206 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG +E + ED+V++DV GV Y+ +C  RTL+ L  +G+   LF+ET +R+D IRL
Sbjct: 1   MIGKLKGTVEEIGEDHVVVDVHGVGYVAFCGARTLAGLSGVGEAIVLFIETIVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R WF LLQ+VQGVG++VA+ V+  +++ +L  ++ LQ+  ++A+ PG+  K+
Sbjct: 61  YGFATAAERDWFRLLQTVQGVGSKVALAVIGTLSSGDLANAVALQDKAMVARTPGVGPKV 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK +A + S    ++   + K      +  +   +A+SAL NLGY +DQA TA
Sbjct: 121 AQRIVAELKDRAPAFSGAGSEESFGL-KRDIGGGTASAPVADAVSALTNLGYPRDQAATA 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V + ++     AD +++IRL L+A+S
Sbjct: 180 VATAVRDAGEDADSAKLIRLGLKALS 205


>gi|307708034|ref|ZP_07644503.1| holliday junction DNA helicase RuvA [Streptococcus mitis NCTC
           12261]
 gi|307615924|gb|EFN95128.1| holliday junction DNA helicase RuvA [Streptococcus mitis NCTC
           12261]
          Length = 197

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 96/206 (46%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++V G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYLKGIITKITAKYIVLEVNGIGYILHV-ANPYAYSGQVNQEAQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +         ++          +       A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVVAGDDFPAKVA------VQASAENQELEEAMEAMLALGYKATE---- 169

Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205
           +  + K  +   D     I+ AL+ +
Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195


>gi|313837773|gb|EFS75487.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes
           HL037PA2]
 gi|314927345|gb|EFS91176.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes
           HL044PA1]
 gi|314972425|gb|EFT16522.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes
           HL037PA3]
 gi|328907430|gb|EGG27196.1| holliday junction DNA helicase RuvA [Propionibacterium sp. P08]
          Length = 201

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 53/208 (25%), Positives = 97/208 (46%), Gaps = 10/208 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +      +V++D  GV   + CP  T +   +I    +L     +R+D + L
Sbjct: 1   MISHLSGKVNAAGLTWVVLDNCGVGIKVLCPPATAAS-ARIDQDMSLQTSLIVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   DR  F L+Q+  GVG ++A  ++S + A +L  +I  ++   + ++PGI  K 
Sbjct: 60  YGFVEADDRDAFELVQTASGVGPKLAAAIMSVLDAAQLATAIANEDDATLCRVPGIGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A++++ ELK K  + +          +          S+       LV LG+    A  A
Sbjct: 120 AAKMILELKDKMAAFAPRGSSSSGAAH-------VAASWREQVAEGLVGLGWPTKDAEKA 172

Query: 181 VVSV--LKKEKNIADDSQIIRLALRAIS 206
           V  V  L++         ++R ALR+++
Sbjct: 173 VDEVAALREADPTMTIGSLMRAALRSLA 200


>gi|322388581|ref|ZP_08062181.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           infantis ATCC 700779]
 gi|321140501|gb|EFX36006.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           infantis ATCC 700779]
          Length = 197

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 97/206 (47%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYLKGIITKITAKYIVLEANGIGYILHV-ANPYAYSGQVNQEAQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +     +    +  +       S       A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVVAGDDLPAKTAAPS------SSDNQELEEAMEAMLALGYKATE---- 169

Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205
           +  + K  +  +D     I+ AL+ +
Sbjct: 170 LKKIKKFFEGTSDTAENYIKSALKML 195


>gi|317128202|ref|YP_004094484.1| Holliday junction DNA helicase RuvA [Bacillus cellulosilyticus DSM
           2522]
 gi|315473150|gb|ADU29753.1| Holliday junction DNA helicase RuvA [Bacillus cellulosilyticus DSM
           2522]
          Length = 204

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 96/205 (46%), Gaps = 4/205 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +  + V ++V  V Y+++C          I +  T++   H+R+D I+L
Sbjct: 1   MIESLTGVVSNIEIESVTLNVHDVGYLVFC-ANPFRYEENINEKVTIYTYQHVREDAIKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F  L  V G+G + A+ +L+    T +V++I  +N K + + PG+  K 
Sbjct: 60  YGFKNRDERKLFEKLLQVSGIGPKGALAILATGEPTLVVQAIEAENEKFLVKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK +        + + +      +         A+ AL  LGY   +    
Sbjct: 120 ARQIILDLKGKLVDFLQESGGEDTKLIAIDDDMQLENYELEEALEALKALGYVDREINKV 179

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +   +         I++AL+ +
Sbjct: 180 LPKL---KDTKETTDGYIKIALKLM 201


>gi|167766364|ref|ZP_02438417.1| hypothetical protein CLOSS21_00868 [Clostridium sp. SS2/1]
 gi|167711955|gb|EDS22534.1| hypothetical protein CLOSS21_00868 [Clostridium sp. SS2/1]
          Length = 190

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 58/193 (30%), Positives = 99/193 (51%), Gaps = 6/193 (3%)

Query: 13  YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWF 72
               V++D  G+ Y +  P+R      KIG    ++   H+R+D + LFGFLS  +++ F
Sbjct: 2   SPGMVVVDNHGIGYQMMVPMRG-ESFPKIGQEIKIYTHMHVREDDVSLFGFLSKEEKEAF 60

Query: 73  MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132
            LL  V G+G +V + VLS ++  EL  ++I ++ K I++ PG+  K A +++ ELK K 
Sbjct: 61  ELLIGVNGIGPKVGLSVLSTLSVYELKMAVISEDVKTISKTPGLGPKGAKKLILELKDKL 120

Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIA 192
                 +++D            S  S  I  I  LV+LGY + +A  AV  V  ++    
Sbjct: 121 S--FEELEEDGVGAEIFDTSADSSDSVMI-TIEGLVSLGYSKSEAAIAVNKV--EDAKDL 175

Query: 193 DDSQIIRLALRAI 205
              ++++ AL+ I
Sbjct: 176 TPEELLKKALKNI 188


>gi|323489997|ref|ZP_08095218.1| Holliday junction ATP-dependent DNA helicase ruvA [Planococcus
           donghaensis MPA1U2]
 gi|323396293|gb|EGA89118.1| Holliday junction ATP-dependent DNA helicase ruvA [Planococcus
           donghaensis MPA1U2]
          Length = 198

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 94/205 (45%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +  +Y++I+ QG+ + I+ P    S      +   +F+  H+R+D   L
Sbjct: 1   MYDYIKGTVTRVTPEYLVIEQQGIGWQIFAP-NPYSF---GTEDLQVFLHHHVREDAQLL 56

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +   R+ F  L SV G+G + A+ +L+      ++E+I  +N   + + PG+  K 
Sbjct: 57  FGFPTFEQRELFRKLISVSGIGPKGALAILASGQPQHVIEAIEQENESYLVKFPGVGKKT 116

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK          D   V      + +       A+ AL  LGY + +    
Sbjct: 117 ARQMILDLKGKLTEFFG----DSLGVEDTSNLLSNDQLELEEAMLALGALGYSEREINK- 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V   L+      D    ++ AL+ +
Sbjct: 172 VKPQLRDL--DLDTEGFMKKALQLL 194


>gi|309789628|ref|ZP_07684209.1| Holliday junction DNA helicase RuvA [Oscillochloris trichoides DG6]
 gi|308228364|gb|EFO82011.1| Holliday junction DNA helicase RuvA [Oscillochloris trichoides DG6]
          Length = 198

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 10/204 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+++I+  GV +++Y P   L   G + +   L+    +R+D + L
Sbjct: 1   MIASLRGTLIHIGSDHLVIETGGVGWLVYAPRSVLGACGALNETIFLYTHMIVREDALLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +   R  F  L SV GVG +V + +LS  +  ++   +   N+  +A++PGI  K 
Sbjct: 61  YGFQTLEQRALFESLLSVSGVGPKVGLSLLSAGSPDDIRLMVAQNNTTALARVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK                       +  +        LV+LGY   +A+ A
Sbjct: 121 AERLVLELKGKLDLKGLPTAA--------GGVAAAPSALNAELAELLVSLGYSSAEASAA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           V S+        D    +RLALR 
Sbjct: 173 VASLPADAPE--DLEVRLRLALRY 194


>gi|146328995|ref|YP_001210061.1| holliday junction DNA helicase RuvA [Dichelobacter nodosus
           VCS1703A]
 gi|166230547|sp|A5EXH7|RUVA_DICNV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|146232465|gb|ABQ13443.1| holliday junction DNA helicase RuvA [Dichelobacter nodosus
           VCS1703A]
          Length = 204

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 56/201 (27%), Positives = 94/201 (46%), Gaps = 6/201 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +     D +LI+V GV Y +  P   ++   ++G+  T+FV    R+D   L
Sbjct: 1   MIGWLQGRVLYKQNDQLLINVCGVGYELTVPQSVMAS-AQVGEELTVFVHHVQREDGQFL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S L RQ F  L  V G+G ++++ +LS +T   L+ ++  Q S    ++ GI  K 
Sbjct: 60  YGFSSFLQRQLFRELIRVSGIGPKLSIVILSGLTPEALIAAVRAQESAPFLRLSGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL  +       +  +        +      S +  AI AL+ L     +A   
Sbjct: 120 AERLLIELHDRVEKNDLFLCDESES-----SRAPIALSASEEAIQALIALELAPAEAELW 174

Query: 181 VVSVLKKEKNIADDSQIIRLA 201
           V    K     AD + +I+ A
Sbjct: 175 VKKAQKTLAEDADSAALIKTA 195


>gi|317500339|ref|ZP_07958564.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316898280|gb|EFV20326.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 184

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 89/185 (48%), Gaps = 4/185 (2%)

Query: 22  QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGV 81
            G+ Y ++ P + L+ L  +G+   L+   ++R+D ++LFGFL+  D + F L+  V G+
Sbjct: 2   GGIGYGVFMPHQALAMLPSVGNEVKLYTYLNVREDAMQLFGFLTKDDLEIFRLVIGVSGI 61

Query: 82  GARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAI-SLSSVVQ 140
           G +  + +LS ++  EL  +I+  ++K+I+  PGI  K A +++ EL+ K          
Sbjct: 62  GPKGGLNILSCMSPDELRFAIMSGDAKMISSAPGIGKKTAEKLIVELRDKVDIEKMLDHA 121

Query: 141 QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRL 200
                  +      S       A+ ALV LGYG  ++  AV               I++ 
Sbjct: 122 AHPEETIQTDMAKTSANEMQSEAVQALVALGYGSAESLRAVKK---TSVQCQTVEDILKE 178

Query: 201 ALRAI 205
           AL+ +
Sbjct: 179 ALQYL 183


>gi|220904537|ref|YP_002479849.1| Holliday junction DNA helicase RuvA [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219868836|gb|ACL49171.1| Holliday junction DNA helicase RuvA [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 204

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 53/192 (27%), Positives = 89/192 (46%), Gaps = 7/192 (3%)

Query: 1   MIGKIKGNIEGLYEDY-VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  ++G +   + +  +LI   GV Y +  P  TLS L   G+   L+    +R+D + 
Sbjct: 1   MIAYLEGRLAETWGNTCLLITENGVGYAVALPAHTLSVLPGRGEHLALYTSLAVREDALE 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF +  +RQ F +L S+  VGAR A+ +LS     +L   +  ++   + ++ GI  K
Sbjct: 61  LFGFATFEERQTFEVLISISKVGARTALSILSIYRPEDLRRIVFEEDVMALTRVSGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A  +  ELK K          D+       +      S   + +  L NLGY +D+   
Sbjct: 121 TAQHVFLELKYKLK------VDDVPQAAVLASTGERPGSVFRDVLDGLANLGYAEDECAP 174

Query: 180 AVVSVLKKEKNI 191
            V  +L +E ++
Sbjct: 175 MVKKLLHEEPDL 186


>gi|218441378|ref|YP_002379707.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 7424]
 gi|226725437|sp|B7K970|RUVA_CYAP7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|218174106|gb|ACK72839.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 7424]
          Length = 209

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 92/214 (42%), Gaps = 13/214 (6%)

Query: 1   MIGKIKGNIEGL-----YEDYVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMR 54
           MI  +KG    +       + ++++V  + Y I  P R    L  +      +F    +R
Sbjct: 1   MINYLKGKTTQILKTPSNRNILILEVNHIGYEIQIPSRLARNLSLEEDQIVQIFTHLQIR 60

Query: 55  QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114
           +DQ  L+GF +D +R  F  L ++ GVG + A+ ++  +    L+ +I+  + K +++ P
Sbjct: 61  EDQQILYGFSTDSERDLFRQLININGVGTQTAIALIDTLGIEALINAIVTNDVKTLSKTP 120

Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           G+  K A RI  ELK K       +      +    +               L+ LGY  
Sbjct: 121 GVGPKTAERIALELKSKLSQWEQAI-----ALKTPVSVGVPSREILEEVEMTLLALGYTD 175

Query: 175 DQATTAVVSVLKKEKNIAD--DSQIIRLALRAIS 206
           ++   A+ ++ +    + +    + ++ A+  +S
Sbjct: 176 EEIDQAISAISQDNLLLKNPHVEEWLKSAIAWLS 209


>gi|171778535|ref|ZP_02919662.1| hypothetical protein STRINF_00514 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282758|gb|EDT48182.1| hypothetical protein STRINF_00514 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 197

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 89/205 (43%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++I+V G+ YI+       S    +     +++   +R+D   L
Sbjct: 1   MYDYIKGKLTKITAKYIVIEVGGLGYIVNV-ANPYSFSDLMNQDIQVYLHQVIREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTEDEKAVFLNLISVSGIGPTTALAIIAVDDNEGLVNAIDTSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK + +S           K      +       A+ AL+ LGY   +    
Sbjct: 120 AQQMVLDLAGKFVDVSVENG-------KVSQTKAAANEQLEEAMEALLALGYKAAELKK- 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +      E       Q I+ +L+ +
Sbjct: 172 IRKFF--EGTNETAEQYIKSSLKML 194


>gi|269216143|ref|ZP_06159997.1| holliday junction DNA helicase RuvA [Slackia exigua ATCC 700122]
 gi|269130402|gb|EEZ61480.1| holliday junction DNA helicase RuvA [Slackia exigua ATCC 700122]
          Length = 196

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 95/205 (46%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G + G  +    +DV GV + +      LS L   G+   +     +R+D + L
Sbjct: 1   MIAFLNGVVAGKNQSTAFVDVGGVGFAVGMSANDLSRLPPTGERVLIHTYFAVREDAMTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS   +  F  L  V  VG ++A+  LS   A+E + +++  ++  ++++PGI  K+
Sbjct: 61  YGFLSLESKSLFEKLIGVSSVGPKIALAALSTFKASEFIAAVLSGDAAAVSKVPGIGKKM 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELKG           D S  +          +    A  AL+ +G+   +A  A
Sbjct: 121 AQRIILELKGSL--------ADASVDDLFSTKAGEQAARLQGAKEALLAMGFTSAEADVA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +    +    +  DS +++ ALR +
Sbjct: 173 LKDAPET---LVTDSALLQYALRRL 194


>gi|258645438|ref|ZP_05732907.1| holliday junction DNA helicase RuvA [Dialister invisus DSM 15470]
 gi|260402789|gb|EEW96336.1| holliday junction DNA helicase RuvA [Dialister invisus DSM 15470]
          Length = 201

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 97/204 (47%), Gaps = 7/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG IKG    + +++  I+  G+ Y ++    +   +  +G    L     +R+D I L
Sbjct: 1   MIGYIKGKATVVSKEFCFIEAGGIGYRVFISEMSRQKI-HLGAPVRLLTYMAVREDAILL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +   F++L SV  +G +VAMG+LS +   + V SI  +N  V+ ++PG+  K 
Sbjct: 60  YGFLTQEEYDLFLILISVSKIGPKVAMGILSVMEPADFVLSIRNRNLSVLTKLPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K    +   + D+       A        A +A   L  LGY   +    
Sbjct: 120 AERLLVELKDKVGDFA---EGDIDEPESLAAGKPDESGIAADAAKYLRALGYEDTEIQPV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           +  +  + K   D S ++  ALR 
Sbjct: 177 LKKLSIEYK---DVSPLVSAALRE 197


>gi|326382127|ref|ZP_08203819.1| Holliday junction DNA helicase RuvA [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326198857|gb|EGD56039.1| Holliday junction DNA helicase RuvA [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 201

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 92/204 (45%), Gaps = 12/204 (5%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           I  + G +  +  D+ +++  GV Y +     TL  L K G    L     +R+D + L+
Sbjct: 6   IASVSGEVIDIALDHAVVECAGVGYKVLATPPTLGSL-KRGGHVRLLTSMMVREDSMTLY 64

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF     R  F LLQ+V GVG R+AM  L+ +    L  ++   ++K +  +PGI  ++A
Sbjct: 65  GFTDPEARDLFGLLQTVTGVGPRLAMATLAVLEPDSLRRALAESDAKALTTVPGIGKRVA 124

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
            R++ EL+ K            +                     ALV LG+ +  A  AV
Sbjct: 125 ERLVVELRDKV----------TAGSAGAVPGAPVAAGAGAQVTEALVGLGFTEGAAQKAV 174

Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205
            +VL  +   AD S ++R AL A+
Sbjct: 175 AAVLADDP-GADSSSLLRSALTAL 197


>gi|322392518|ref|ZP_08065978.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           peroris ATCC 700780]
 gi|321144510|gb|EFX39911.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           peroris ATCC 700780]
          Length = 197

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 96/206 (46%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYLKGIITKITAKYIVLEANGIGYILHV-ANPYAYSGQVNQEAQIYVHQVVREDVHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKRLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +     +    +  +       S       A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVVAGDDLPAKTAAPS------SSDNQELEEAMEAMLALGYKATE---- 169

Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205
           +  + K  +   D     I+ AL+ +
Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195


>gi|255994147|ref|ZP_05427282.1| holliday junction DNA helicase RuvA [Eubacterium saphenum ATCC
           49989]
 gi|255993815|gb|EEU03904.1| holliday junction DNA helicase RuvA [Eubacterium saphenum ATCC
           49989]
          Length = 194

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 95/205 (46%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G I    E  +++D   + Y I  P+ +     +I +   ++ E  +R+D + L
Sbjct: 1   MIKFLRGRIFEKLESCIVLDTGNIGYQINLPLNSPFFTAEISEEVLVYTELIVREDDMSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF       +F LL ++ GVGA+ ++ +LS  T  EL  +I  +++  I++  GI  K 
Sbjct: 61  YGFEDFKTLNFFNLLMNINGVGAKASLALLSVSTVDELARAIASKDTAFISRANGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  EL  K  S++  +                +      A  AL++LGY +++A   
Sbjct: 121 AERIALELSDKVESIAYNLPS-------NNEVTSVVSGNKAEACEALMSLGYNKNEAM-- 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             +VLK      D    IR AL  +
Sbjct: 172 --NVLKSLDEGLDTQSYIRKALTLL 194


>gi|306834544|ref|ZP_07467657.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           bovis ATCC 700338]
 gi|304423346|gb|EFM26499.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           bovis ATCC 700338]
          Length = 197

 Score =  135 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 88/205 (42%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++I+  G+ YI+       S    +     +++   +R+D   L
Sbjct: 1   MYDYIKGKLTKITAKYIVIEAGGLGYIVNV-ANPYSFSDLVNQEVQIYLHQVIREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTEDEKAVFLNLISVSGIGPTTALAIIAVDDNEGLVNAIDTSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK + +S    +             +       A+ AL+ LGY   +    
Sbjct: 120 AQQMVLDLAGKFVDVSVENGKAS-------QTKTATNEQLEEAMEALLALGYKAAELKK- 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +      E       Q I+ +L+ +
Sbjct: 172 IRKFF--EGTNETAEQYIKSSLKML 194


>gi|256545112|ref|ZP_05472478.1| Holliday junction DNA helicase RuvA [Anaerococcus vaginalis ATCC
           51170]
 gi|256399153|gb|EEU12764.1| Holliday junction DNA helicase RuvA [Anaerococcus vaginalis ATCC
           51170]
          Length = 199

 Score =  135 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 100/205 (48%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G I+ + ED  +I+   + Y I     T+  L +I +   +F + ++R+D I L
Sbjct: 1   MISYIIGEIKYIGEDNFVIENNNIGYFINSSFNTIKTL-EINNEFKIFTKMNVREDDISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  + + F LL SV  +G + A+ +LS +   ++  +I+  +   + +  GI  K 
Sbjct: 60  FGFSSKDELEVFELLTSVSTIGPKNAIAILSTLNVDKIKLAIVNNDIDTLTKAKGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ EL  K   ++     D   ++ +     +       A  AL+NLGY ++     
Sbjct: 120 ASRIILELVDKVKKMAI---NDDISISNQDFDNITSNGEIEVAREALLNLGYQRNSIDKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + S+   + +     +II+ +L+ +
Sbjct: 177 LSSL---KDSDLSLEEIIKESLKRM 198


>gi|256391548|ref|YP_003113112.1| Holliday junction DNA helicase RuvA [Catenulispora acidiphila DSM
           44928]
 gi|256357774|gb|ACU71271.1| Holliday junction DNA helicase RuvA [Catenulispora acidiphila DSM
           44928]
          Length = 208

 Score =  135 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 55/211 (26%), Positives = 98/211 (46%), Gaps = 11/211 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +     +++V GV  +++C   TL+ L  +G+   LF    +R+D + L
Sbjct: 1   MIAFVSGPVAAVTPTSAVVEVGGVGMLVHCGPGTLAAL-AVGEKAKLFTALVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +D +R  F LLQ+  G+G +VA  +LS      L    +  +   + Q+PGI  K 
Sbjct: 60  YGFATDDERTVFELLQTASGIGPKVAQAMLSVHAPDTLRTIFMTGDEAALTQVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +    +  V                + S+ +  + AL  LG+   +A  A
Sbjct: 120 AQRLLLELKERLGPPTGAVPGQAHNGWSRAG----LGSWRVQLLEALTGLGWTAREADDA 175

Query: 181 VVSV----LKKEKNIADDS--QIIRLALRAI 205
           V +V     ++E          +++ ALR +
Sbjct: 176 VSAVGPLAAEQEAAGQTVQLGPLLKAALRTM 206


>gi|186683711|ref|YP_001866907.1| Holliday junction DNA helicase RuvA [Nostoc punctiforme PCC 73102]
 gi|186466163|gb|ACC81964.1| Holliday junction DNA helicase RuvA [Nostoc punctiforme PCC 73102]
          Length = 228

 Score =  135 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 57/213 (26%), Positives = 96/213 (45%), Gaps = 14/213 (6%)

Query: 1   MIGKIKGNIEGL---YEDYVLI--DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55
           MI  +KG + G+     + V++  +V G+ Y +  P R  + L + G    +F    +R+
Sbjct: 19  MISYLKGIVAGIQTIGANRVILTLEVNGLGYDLQVPQRLANQLPESGGVAQIFTHFQIRE 78

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           +   L+GF S  +R  F  L +V G+GA +A+ +L  +   +LV++II  N++++ Q PG
Sbjct: 79  EVPYLYGFASPAERDLFRHLLTVTGIGAALAIALLDTLELPDLVQAIIAGNTQILIQAPG 138

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           +  KIA RI  ELK K +                 A     P         L  LGY   
Sbjct: 139 VGKKIAERICLELKSKLVEWR-------KSAGFFVATGGPAPGILEEVQMTLFALGYTAH 191

Query: 176 QATTAVVSVLKK--EKNIADDSQIIRLALRAIS 206
           + + A+  V +       A     I+ A+  +S
Sbjct: 192 EVSHALHVVSEDIGLPKDAYVEDWIKQAIAHLS 224


>gi|226355827|ref|YP_002785567.1| Holliday junction DNA helicase RuvA [Deinococcus deserti VCD115]
 gi|226317817|gb|ACO45813.1| putative Holliday junction ATP-dependent DNA helicase ruvA
           [Deinococcus deserti VCD115]
          Length = 202

 Score =  135 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 49/204 (24%), Positives = 88/204 (43%), Gaps = 7/204 (3%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           I  + G +  + E+  +I   GV Y + CP  TL  L  +G    L     +R+D   LF
Sbjct: 5   IAYLSGVVREVRENSAVIVAGGVGYEVQCPAGTLGKLV-VGQNAELSTRFVVREDAQLLF 63

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF      + F L+  V GVG ++ + +LS +  + L + ++  + K+++ + G+  K A
Sbjct: 64  GFSDADSLKLFDLVTGVSGVGPKLGLSLLSAMPVSALAQGLMAGDVKLLSSVSGVGKKTA 123

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
            R++ EL+ K     +                    +   +AI AL+ LG+ + Q    V
Sbjct: 124 ERLVLELQNKVPEHLAAAGVPAGTRAT-----PVSSTAGRDAIEALLALGFREAQVRGVV 178

Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205
             +L  +        +IR  L  +
Sbjct: 179 AELLGADP-TQSADALIRKGLGRL 201


>gi|300362258|ref|ZP_07058434.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           gasseri JV-V03]
 gi|300353249|gb|EFJ69121.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           gasseri JV-V03]
          Length = 192

 Score =  135 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 94/205 (45%), Gaps = 16/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  +   YV++DV G+ Y I CP              T++VE  +R   I L
Sbjct: 1   MFEYLKGIVAKIDPAYVVLDVNGIGYKILCPTPYSYQ---ENQPATIYVEQVVRDTGITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  D++ F+ L SV G+G + A+ +++      L  +I     K + + PG+  K 
Sbjct: 58  YGFLSLEDKELFLKLLSVSGIGPKSAVAIMAAEDTDSLASAIQNGEVKYLTRFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK                K+      +     +A+ ALV LGY Q +    
Sbjct: 118 ASQIVLDLKGKLGDY-----------VKKSTVAADLSPSLQDAVLALVALGYTQKEVDRI 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              + K  +N AD    I+ AL  +
Sbjct: 167 TPKLAKLPENTADG--YIKEALALL 189


>gi|307705927|ref|ZP_07642764.1| holliday junction DNA helicase RuvA [Streptococcus mitis SK597]
 gi|307620523|gb|EFN99622.1| holliday junction DNA helicase RuvA [Streptococcus mitis SK597]
          Length = 197

 Score =  135 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 97/206 (47%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++V G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYLKGIITKITAKYIVLEVNGIGYILHV-ANPYAYSGQVNQEAQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +     +   ++          +       A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVVAGDDLPVKVA------VKASAENQELEEAMEAMLALGYKATE---- 169

Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205
           +  + K  +   D     I+ AL+ +
Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195


>gi|303328183|ref|ZP_07358621.1| holliday junction DNA helicase RuvA [Desulfovibrio sp. 3_1_syn3]
 gi|302861513|gb|EFL84449.1| holliday junction DNA helicase RuvA [Desulfovibrio sp. 3_1_syn3]
          Length = 203

 Score =  135 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 88/192 (45%), Gaps = 8/192 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  ++G +   + +  LI    GV Y +  P  TL+ L   G+   L+    +R+D + 
Sbjct: 1   MIAYLEGRLAETWGNACLIVTEGGVGYEVALPAHTLAALPDRGEQLALYTSLAVREDALE 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF S  +RQ F +L S+  VGAR A+ +LS     +L   ++  +   + ++ GI  K
Sbjct: 61  LFGFASFEERQTFEVLVSISKVGARTALAILSIFRPDDLRRLVLEDDVLALTRVSGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A  +  ELK K           ++   +         S   + +  L NLGY +++   
Sbjct: 121 TAQHVFLELKYKLKVEDVPQAAVLAASGR-------PGSVFRDVLDGLANLGYAEEECAP 173

Query: 180 AVVSVLKKEKNI 191
            V  +L +E ++
Sbjct: 174 LVKKILHEEPDL 185


>gi|88602182|ref|YP_502360.1| Holliday junction DNA helicase RuvA [Methanospirillum hungatei
           JF-1]
 gi|88187644|gb|ABD40641.1| Holliday junction DNA helicase subunit RuvA [Methanospirillum
           hungatei JF-1]
          Length = 195

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 105/202 (51%), Gaps = 13/202 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +I+G + G     V+++  G+ Y I  P   L+ + K  D   L+ E  +RQD ++L
Sbjct: 1   MIARIRGLVIGYETGSVIVEAGGIGYRIRVPESVLTSITK-DDEIILYTELIIRQDLMQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  + + F LL SV  +G +  + ++SR++  E+ ++I  +  ++++Q+ G+  K 
Sbjct: 60  YGFYTPEETEMFRLLISVSHIGPQTGLAIISRLSLPEICDAISSKKPEILSQVQGLGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL+ K   L     Q  +   K Q           +A+ AL++LGY +++A  A
Sbjct: 120 AERIILELQKKVSELKIQYPQTPTSSTKIQ-----------DAVLALLSLGYSREEAMGA 168

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           +      +      S+++R AL
Sbjct: 169 LER-SALDTETVSSSELVREAL 189


>gi|269925207|ref|YP_003321830.1| Holliday junction DNA helicase RuvA [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269788867|gb|ACZ41008.1| Holliday junction DNA helicase RuvA [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 192

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 99/206 (48%), Gaps = 16/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG+IE    D +++ V GV   ++ P   +  +G+IGD   L     +R+D + L
Sbjct: 1   MIASIKGHIEYKLNDGLIVQVGGVGLRVFTPSSMVREIGEIGDEVYLHTHLMVREDALTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +    + F LL SV GVG   A+ +LS  +  E+  +I  +N++  + IP I  K+
Sbjct: 61  YGFSTREQLRLFELLISVTGVGPNHALNILSSASVEEIQTAIAQENAQFFSLIPRIGKKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ ELKGK       VQ               +       +SAL+ LGY   +A  A
Sbjct: 121 AARIILELKGKVEPSGEAVQ--------------IISHKDEELVSALLALGYTLGEAQAA 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V S+           + +RLAL   S
Sbjct: 167 VRSLPTD--KELPMEEKLRLALSYFS 190


>gi|315612298|ref|ZP_07887212.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis ATCC 49296]
 gi|315315691|gb|EFU63729.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis ATCC 49296]
          Length = 197

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 98/206 (47%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++V G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYLKGIITKITAKYIVLEVNGIGYILHV-ANPYAYSGQVNQETQIYVHQVVREDTHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +  S  +   ++          +       A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVVASDDLPAKVA------VQTSAENQELEEAMEAMLALGYKATE---- 169

Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205
           +  + K  +   D     I+ AL+ +
Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195


>gi|116629085|ref|YP_814257.1| Holliday junction resolvasome, DNA-binding subunit [Lactobacillus
           gasseri ATCC 33323]
 gi|238853828|ref|ZP_04644193.1| holliday junction DNA helicase RuvA [Lactobacillus gasseri 202-4]
 gi|311111127|ref|ZP_07712524.1| holliday junction DNA helicase RuvA [Lactobacillus gasseri MV-22]
 gi|122273917|sp|Q045Q3|RUVA_LACGA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|116094667|gb|ABJ59819.1| Holliday junction DNA helicase subunit RuvA [Lactobacillus gasseri
           ATCC 33323]
 gi|238833523|gb|EEQ25795.1| holliday junction DNA helicase RuvA [Lactobacillus gasseri 202-4]
 gi|311066281|gb|EFQ46621.1| holliday junction DNA helicase RuvA [Lactobacillus gasseri MV-22]
          Length = 192

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 95/205 (46%), Gaps = 16/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  +   YV++DV G+ Y I CP              T++VE  +R   I L
Sbjct: 1   MFEYLKGIVAKIDPAYVVLDVNGIGYKILCPTPYSYQ---ENQPATIYVEQVVRDTGITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  D++ F+ L SV G+G + A+ +++      L  +I     K + + PG+  K 
Sbjct: 58  YGFLSLEDKELFLKLLSVSGIGPKSAVAIMAAEDTDSLASAIQNGEVKYLTRFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK                K+ A    +     +A+ ALV LGY Q +    
Sbjct: 118 ASQIVLDLKGKLGDY-----------VKKSAVATDLTPSLQDALLALVALGYTQKEVDRI 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              + K  +N AD    I+ AL  +
Sbjct: 167 TPKLAKLPENTADG--YIKEALALL 189


>gi|319892695|ref|YP_004149570.1| Holliday junction DNA helicase RuvA [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162391|gb|ADV05934.1| Holliday junction DNA helicase RuvA [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 199

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 95/206 (46%), Gaps = 10/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           M   I G +  L+  +++++   G+ Y I  P  +      +     ++    +R+D   
Sbjct: 1   MYAYISGKLTALHPTHIIVETTSGIGYEIQTP-NSYRFQKNLDQTVKVYTSLIVREDAQL 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF+   ++  F+ L  V G+G + A+ +L+  +  E+  +I  +N   + Q PGI  K
Sbjct: 60  LYGFIDQEEKDMFLSLIKVTGIGPKSALAILAASSPNEVKRAIENENDAYLTQFPGIGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +I+ +LKGK +    V +  +    +++            A+ AL  LGY + +   
Sbjct: 120 TARQIVLDLKGKVVVTEEVSEGLLDIATEQE------DLAVQEALLALEALGYSKRELKK 173

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            V   ++++   +D  + ++  L+ +
Sbjct: 174 -VEKAMQQQI-FSDVDEAVKYGLKQL 197


>gi|327398312|ref|YP_004339181.1| Holliday junction ATP-dependent DNA helicase ruvA [Hippea maritima
           DSM 10411]
 gi|327180941|gb|AEA33122.1| Holliday junction ATP-dependent DNA helicase ruvA [Hippea maritima
           DSM 10411]
          Length = 189

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 96/205 (46%), Gaps = 20/205 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  ++G +        +IDV G+   I  P+ T + L +IG+ CTL  E  + +  ++L
Sbjct: 1   MLEAVRGTLVDKTNLKAVIDVNGLMLDISIPLSTFNKLPEIGEECTLLCELVIGEKSLKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  ++  F  L+ +  +GA+ A+ +LS I+  +   +I  QN +++ +IPGI  K 
Sbjct: 61  YGFSTKEEKNLFNSLRKISKIGAQTAISILSNISIEQFYRAIEEQNKELLTKIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A  I+ E   K                         P    +AI+ L  LG+ Q  A+  
Sbjct: 121 AISIIVEFSSKIPK-------------------TDNPPIVDDAITTLQGLGFSQSDASKI 161

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  + + + NI     +I+ +L+ I
Sbjct: 162 VNEIYRNKPNI-TIEDLIKESLKNI 185


>gi|239932397|ref|ZP_04689350.1| Holliday junction DNA helicase RuvA [Streptomyces ghanaensis ATCC
           14672]
 gi|291440764|ref|ZP_06580154.1| holliday junction DNA helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291343659|gb|EFE70615.1| holliday junction DNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 201

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 56/209 (26%), Positives = 94/209 (44%), Gaps = 14/209 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L  D  +++V GV   + C   TLS L ++G    L     +R+D + L
Sbjct: 1   MIAFVSGTVAALAPDTAVVEVGGVGMAVQCTPNTLSTL-RVGRPAKLHTSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+  T   L  ++   + K +  +PGI  K 
Sbjct: 60  YGFADDDERQVFELLQTASGVGPRLAQAMLAVHTPDALRRAVATADEKALTAVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD---QA 177
           A +++ ELK +              V    A   +   +     +AL+ LGY      +A
Sbjct: 120 AQKLLLELKDRLGE----------PVGAPAAGAPAAAGWRDQLHAALIGLGYATREADEA 169

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
             AV    +          +++ AL+ ++
Sbjct: 170 VAAVAPQAEAAGGTPRVGPLLKAALQTLN 198


>gi|227518048|ref|ZP_03948097.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0104]
 gi|227074484|gb|EEI12447.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0104]
          Length = 223

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 89/206 (43%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  +   Y++++  G+ Y I          GK+     L++   +R+D   L
Sbjct: 20  MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 78

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMK 119
           FGF S  ++Q F+ L SV G+G +  + +++ +     L+ +I  ++   + + PG+  K
Sbjct: 79  FGFGSLDEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 138

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +++ +LKGK   L S      +    E   + +       A+ AL  LGY   +   
Sbjct: 139 TAQQMILDLKGKLGELESSEAAVAAMTATEA--VTTSNQALAEALEALSALGYSDREIKR 196

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
               +    +   D    +  AL+ +
Sbjct: 197 ITKQLEALGETTTDV--YLSNALKFM 220


>gi|288906381|ref|YP_003431603.1| Holliday junction DNA helicase [Streptococcus gallolyticus UCN34]
 gi|306832428|ref|ZP_07465581.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325979395|ref|YP_004289111.1| Holliday junction ATP-dependent DNA helicase ruvA [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288733107|emb|CBI14688.1| Holliday junction DNA helicase [Streptococcus gallolyticus UCN34]
 gi|304425468|gb|EFM28587.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325179323|emb|CBZ49367.1| Holliday junction ATP-dependent DNA helicase ruvA [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 197

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 88/205 (42%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ YI+       S    +     +++   +R+D   L
Sbjct: 1   MYDYIKGKLTKITAKYIVVEAGGLGYIVNV-ANPYSFSDLVNQEVQIYLHQVIREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ ++  F+ L SV G+G   A+ +++      LV +I   + K + + P I  K 
Sbjct: 60  FGFHTEDEKAVFLNLISVSGIGPTTALAIIAVDDNEGLVNAIDTSDIKYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK + +S    +             +       A+ AL+ LGY   +    
Sbjct: 120 AQQMVLDLAGKFVDVSVENGKAS-------QTKTATNEQLEEAMEALLALGYKAAELKK- 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +      E       Q I+ +L+ +
Sbjct: 172 IRKFF--EGTNETAEQYIKSSLKML 194


>gi|327439540|dbj|BAK15905.1| holliday junction resolvasome, DNA-binding subunit [Solibacillus
           silvestris StLB046]
          Length = 251

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 93/201 (46%), Gaps = 3/201 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  +  +Y++++ QG+ +++Y P               ++V   +R+D   L
Sbjct: 46  MYDYLKGQVTRVTPEYIVLEQQGIGWMLYTPNPFAFR--TSASEQQIYVSLQVREDAQNL 103

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S   R+ F  L  V G+G + A+ +L+    T ++++I +++   + + PG+  K 
Sbjct: 104 YGFNSLEQRELFKKLIQVSGIGPKGALAILASGNPTSVIQAIEMEDEAFLIRFPGVGKKT 163

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK   L   V+   +        +         A+ ALV LGY + +    
Sbjct: 164 ARQMILDLKGKLDMLLDHVELPSAENELPLFGVNPNEHELQEAMLALVALGYSEKELDK- 222

Query: 181 VVSVLKKEKNIADDSQIIRLA 201
           +   L ++  +      I+ A
Sbjct: 223 IRPQLSEDDKLTTTDAYIKQA 243


>gi|119489537|ref|ZP_01622298.1| Holliday junction DNA helicase motor protein [Lyngbya sp. PCC 8106]
 gi|119454616|gb|EAW35763.1| Holliday junction DNA helicase motor protein [Lyngbya sp. PCC 8106]
          Length = 211

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 53/213 (24%), Positives = 102/213 (47%), Gaps = 13/213 (6%)

Query: 1   MIGKIKGNIEGLYEDY-----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55
           MIG +KG +  + ++      +L++   + Y +    R ++ L  +G+   +F    +R+
Sbjct: 1   MIGYLKGTVVAIQKNNSNRVILLLETNNIGYEVQIVPRMIAQLPTMGESIQVFTHLQVRE 60

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           DQ+ L+GF S  +R  F  L SV G+G ++A+ +L+ +  TELV++I+ +N+KV+A+ PG
Sbjct: 61  DQMVLYGFSSFAERDLFRQLVSVSGIGTQLAIALLNTLELTELVQAIVGENTKVLAKTPG 120

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           +  K A RI  ELK K               +     +             L+ LGY   
Sbjct: 121 VGTKTAQRIALELKTKLAQWRQEAGLTTLVSSGLTVEV------QEEIEMTLLALGYTGS 174

Query: 176 QATTAVVSVLKK--EKNIADDSQIIRLALRAIS 206
           +   A+  + ++    +     + I+ A+  ++
Sbjct: 175 EVMQALEFLSQEQQLSSQTSTEEWIKKAIAWMA 207


>gi|270291966|ref|ZP_06198181.1| holliday junction DNA helicase RuvA [Streptococcus sp. M143]
 gi|270279494|gb|EFA25336.1| holliday junction DNA helicase RuvA [Streptococcus sp. M143]
          Length = 197

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 97/206 (47%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYLKGIITKITAKYIVLEANGIGYILHVS-NPYAYSGQVNQETQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +  S  +   ++          +       A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVVASDDLPAKVA------VQASAENQELEEAMEAMLALGYKATE---- 169

Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205
           +  + K  +   D     I+ AL+ +
Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195


>gi|83950117|ref|ZP_00958850.1| Holliday junction DNA helicase motor protein [Roseovarius
           nubinhibens ISM]
 gi|83838016|gb|EAP77312.1| Holliday junction DNA helicase motor protein [Roseovarius
           nubinhibens ISM]
          Length = 216

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 61/213 (28%), Positives = 104/213 (48%), Gaps = 17/213 (7%)

Query: 10  EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69
           +   ED+VL+DV+GV Y++YC  RTL  L  +G+   L+ +  +R+D ++LFGF S +++
Sbjct: 2   DYRAEDHVLLDVRGVGYLVYCSDRTLQALPPVGEHTALYTDLLVREDLLQLFGFTSLVEK 61

Query: 70  QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
           +W  LL  VQG+GA+ ++ +L  +    +  +I L +   +    G+  K A R++ ELK
Sbjct: 62  EWHRLLMGVQGIGAKASLAILGTLGVEGVSRAINLGDWNALKAAKGVGPKTAQRVVNELK 121

Query: 130 GKAISLSSVVQQDMSCVNKEQAHICS----------------MPSFAINAISALVNLGYG 173
            KA  + ++     +                             S    A+SAL NLGY 
Sbjct: 122 DKAPQVMAMGAGAATAPMPAPDDQDEVIETPRAAAAPTPARASQSAQAEALSALSNLGYA 181

Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
             +A +AV          A+   +IR AL+ ++
Sbjct: 182 PGEAASAVAQAADTAPE-AETPALIRAALKLLA 213


>gi|295112392|emb|CBL31029.1| Holliday junction DNA helicase subunit RuvA [Enterococcus sp. 7L76]
          Length = 218

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 89/206 (43%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  +   Y++++  G+ Y I          GK+     L++   +R+D   L
Sbjct: 15  MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 73

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMK 119
           FGF S  ++Q F+ L SV G+G +  + +++ +     L+ +I  ++   + + PG+  K
Sbjct: 74  FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 133

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +++ +LKGK   L S      +    E   + +       A+ AL  LGY   +   
Sbjct: 134 TAQQMILDLKGKLGELESSEAAVAAMTATEA--VTTSNQALAEALEALSALGYSDREIKR 191

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
               +    +   D    +  AL+ +
Sbjct: 192 ITKQLEALGETTTDV--YLSNALKFM 215


>gi|254410540|ref|ZP_05024319.1| Holliday junction DNA helicase RuvA [Microcoleus chthonoplastes PCC
           7420]
 gi|196182746|gb|EDX77731.1| Holliday junction DNA helicase RuvA [Microcoleus chthonoplastes PCC
           7420]
          Length = 210

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 55/215 (25%), Positives = 101/215 (46%), Gaps = 15/215 (6%)

Query: 1   MIGKIKGNIEGLYED-----YVLIDVQGVCYIIYCPIRTLSCLGKIGDF--CTLFVETHM 53
           MI  +KG +  + +       ++++V  + Y +    R LS   +IG      +F    +
Sbjct: 1   MISYLKGTVATIQKGNGNRVTLILEVNQIGYEVQIT-RQLSQEVQIGSEQVVQVFTHLQI 59

Query: 54  RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113
           R+DQ  L+GF S  +R  F  L SV G+GA++A+ ++  +    LV++I+  N++ +A+ 
Sbjct: 60  REDQQILYGFASAAERDLFRQLVSVSGIGAQLAIALIDTLGLQNLVQAIVTGNTRTLAKT 119

Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           PG+  K A RI  ELK K         +  + V    +     P+   +    L+ LGY 
Sbjct: 120 PGVGSKTAERIALELKTKLSEW-----RKFAGVETPASATGPSPAILEDVEMTLLALGYE 174

Query: 174 QDQATTAVVSVLKK--EKNIADDSQIIRLALRAIS 206
             + T A+ ++ +        +  + IR A+  +S
Sbjct: 175 TAEITQALNAISQDALLAKNPNAEEWIRRAIAWLS 209


>gi|312901232|ref|ZP_07760515.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0470]
 gi|311291609|gb|EFQ70165.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0470]
          Length = 230

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 89/206 (43%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  +   Y++++  G+ Y I          GK+     L++   +R+D   L
Sbjct: 27  MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 85

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMK 119
           FGF S  ++Q F+ L SV G+G +  + +++ +     L+ +I  ++   + + PG+  K
Sbjct: 86  FGFCSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 145

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +++ +LKGK   L S      +    E   + +       A+ AL  LGY   +   
Sbjct: 146 TAQQMILDLKGKLGELESSEAAVAAMTATEA--VTTSNQALAEALEALSALGYSDREIKR 203

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
               +    +   D    +  AL+ +
Sbjct: 204 ITKQLEALGETTTDV--YLSNALKFM 227


>gi|257417484|ref|ZP_05594478.1| holliday junction DNA helicase RuvA [Enterococcus faecalis AR01/DG]
 gi|257159312|gb|EEU89272.1| holliday junction DNA helicase RuvA [Enterococcus faecalis ARO1/DG]
          Length = 204

 Score =  134 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 89/206 (43%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  +   Y++++  G+ Y I          GK+     L++   +R+D   L
Sbjct: 1   MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMK 119
           FGF S  ++Q F+ L SV G+G +  + +++ +     L+ +I  ++   + + PG+  K
Sbjct: 60  FGFGSLDEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +++ +LKGK   L S      +    E   + +       A+ AL  LGY   +   
Sbjct: 120 TAQQMILDLKGKLGELESSEAAVAAMTATEA--VTTSNQALAEALEALSALGYSDREIKR 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
               +    +   D    +  AL+ +
Sbjct: 178 ITKQLEALGETTTDV--YLSNALKFM 201


>gi|227555748|ref|ZP_03985795.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis HH22]
 gi|229550642|ref|ZP_04439367.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis ATCC
           29200]
 gi|307268982|ref|ZP_07550345.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX4248]
 gi|307274076|ref|ZP_07555285.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0855]
 gi|307284121|ref|ZP_07564291.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0860]
 gi|307287114|ref|ZP_07567187.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0109]
 gi|227175103|gb|EEI56075.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis HH22]
 gi|229304208|gb|EEN70204.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis ATCC
           29200]
 gi|306501893|gb|EFM71183.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0109]
 gi|306503492|gb|EFM72741.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0860]
 gi|306509201|gb|EFM78262.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0855]
 gi|306514651|gb|EFM83203.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX4248]
 gi|315026742|gb|EFT38674.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX2137]
 gi|315033494|gb|EFT45426.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0017]
 gi|315036485|gb|EFT48417.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0027]
 gi|315148995|gb|EFT93011.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX4244]
 gi|315151351|gb|EFT95367.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0012]
 gi|315165799|gb|EFU09816.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX1302]
 gi|315573928|gb|EFU86119.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0309B]
 gi|315581880|gb|EFU94071.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0309A]
 gi|327533913|gb|AEA92747.1| crossover junction ATP-dependent DNA helicase RuvA [Enterococcus
           faecalis OG1RF]
 gi|329576228|gb|EGG57746.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX1467]
          Length = 223

 Score =  134 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 89/206 (43%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  +   Y++++  G+ Y I          GK+     L++   +R+D   L
Sbjct: 20  MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 78

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMK 119
           FGF S  ++Q F+ L SV G+G +  + +++ +     L+ +I  ++   + + PG+  K
Sbjct: 79  FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 138

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +++ +LKGK   L S      +    E   + +       A+ AL  LGY   +   
Sbjct: 139 TAQQMILDLKGKLGELESSEAAVAAMTATEA--VTTSNQALAEALEALSALGYSDREIKR 196

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
               +    +   D    +  AL+ +
Sbjct: 197 ITKQLEALGETTTDV--YLSNALKFM 220


>gi|261337766|ref|ZP_05965650.1| holliday junction DNA helicase RuvA [Bifidobacterium gallicum DSM
           20093]
 gi|270277219|gb|EFA23073.1| holliday junction DNA helicase RuvA [Bifidobacterium gallicum DSM
           20093]
          Length = 212

 Score =  134 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 63/210 (30%), Positives = 107/210 (50%), Gaps = 7/210 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  +     LIDV GV Y +      L+ L  +G   T+F    + QD I L
Sbjct: 1   MIGMLSGQVAAVDTAAALIDVHGVGYEVRMAGADLATL-HVGQDATVFTSMSVSQDAITL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL    ++ F+ LQ V G+G +VA+ +L  + A +L  +I   ++  +A+ PG+  K 
Sbjct: 60  FGFLDHAAKRMFLQLQKVSGIGPKVALSLLGTLDAGQLAHAIYDGDATALAKAPGLGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELKG    L+++     S  +   +         ++ + AL++LG+ Q  A  A
Sbjct: 120 AQKIILELKGSLD-LAALDDASGSDTSVAASAHAPEDRGRLDVVEALISLGWRQQDAQHA 178

Query: 181 VVSVLKKE----KNIAD-DSQIIRLALRAI 205
           V SV+ ++       AD   +++R AL ++
Sbjct: 179 VDSVIHEQDLPTPLAADMVPEVLRAALTSL 208


>gi|15900116|ref|NP_344720.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           TIGR4]
 gi|111657940|ref|ZP_01408649.1| hypothetical protein SpneT_02000889 [Streptococcus pneumoniae
           TIGR4]
 gi|148987917|ref|ZP_01819380.1| Holliday junction DNA helicase motor protein [Streptococcus
           pneumoniae SP6-BS73]
 gi|148992760|ref|ZP_01822403.1| Holliday junction DNA helicase motor protein [Streptococcus
           pneumoniae SP9-BS68]
 gi|149001716|ref|ZP_01826689.1| Holliday junction DNA helicase motor protein [Streptococcus
           pneumoniae SP14-BS69]
 gi|149005932|ref|ZP_01829661.1| Holliday junction DNA helicase motor protein [Streptococcus
           pneumoniae SP18-BS74]
 gi|168486048|ref|ZP_02710556.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           CDC1087-00]
 gi|168490355|ref|ZP_02714554.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           SP195]
 gi|168493877|ref|ZP_02718020.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           CDC3059-06]
 gi|169832637|ref|YP_001693700.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           Hungary19A-6]
 gi|237649747|ref|ZP_04523999.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae CCRI
           1974]
 gi|237821445|ref|ZP_04597290.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae CCRI
           1974M2]
 gi|307126405|ref|YP_003878436.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           670-6B]
 gi|20455255|sp|Q97SY4|RUVA_STRPN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560133|sp|B1I8F7|RUVA_STRPI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|14971646|gb|AAK74360.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           TIGR4]
 gi|147760174|gb|EDK67163.1| Holliday junction DNA helicase motor protein [Streptococcus
           pneumoniae SP14-BS69]
 gi|147762288|gb|EDK69249.1| Holliday junction DNA helicase motor protein [Streptococcus
           pneumoniae SP18-BS74]
 gi|147926381|gb|EDK77454.1| Holliday junction DNA helicase motor protein [Streptococcus
           pneumoniae SP6-BS73]
 gi|147928486|gb|EDK79501.1| Holliday junction DNA helicase motor protein [Streptococcus
           pneumoniae SP9-BS68]
 gi|168995139|gb|ACA35751.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           Hungary19A-6]
 gi|183570844|gb|EDT91372.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           CDC1087-00]
 gi|183571324|gb|EDT91852.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           SP195]
 gi|183576015|gb|EDT96543.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           CDC3059-06]
 gi|306483467|gb|ADM90336.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           670-6B]
 gi|332075851|gb|EGI86318.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           GA17570]
 gi|332076630|gb|EGI87092.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           GA17545]
 gi|332077485|gb|EGI87946.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           GA41301]
 gi|332204192|gb|EGJ18257.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           GA47901]
          Length = 197

 Score =  134 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 96/206 (46%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYAYLKGIITKITAKYIVLETNGIGYILHV-ANPYAYSGQVNQEAQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +     +   ++          +       A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVVAGDDLPAKVA------VQASAENQELEEAMEAMLALGYKATE---- 169

Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205
           +  + K  +   D     I+ AL+ +
Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195


>gi|328881167|emb|CCA54406.1| Holliday junction DNA helicase RuvA [Streptomyces venezuelae ATCC
           10712]
          Length = 210

 Score =  134 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 57/212 (26%), Positives = 95/212 (44%), Gaps = 11/212 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L     +I+V GV   + C   TL+ L +IG    L     +R+D + L
Sbjct: 1   MIAFVSGPVAALAPTTAVIEVGGVGMAVQCTPGTLAGL-RIGADARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L   +   L  ++   + K +  +PGI  K 
Sbjct: 60  YGFADDDERQVFELLQTASGVGPRLAQAMLGVHSPDALRVAVATGDEKALTAVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ E                  V  ++A       +     +AL+ LGY   +A  A
Sbjct: 120 AQKLLLE----LKDKLGAPLGSSGLVGAQRAAAAGPAPWTEQLSAALIGLGYASREAEEA 175

Query: 181 VVSVLKK------EKNIADDSQIIRLALRAIS 206
           V +V  +          A   Q++R AL++++
Sbjct: 176 VAAVTPQAEEAIAAGGAAPVPQLLRAALQSLN 207


>gi|300741595|ref|ZP_07071616.1| holliday junction DNA helicase RuvA [Rothia dentocariosa M567]
 gi|300380780|gb|EFJ77342.1| holliday junction DNA helicase RuvA [Rothia dentocariosa M567]
          Length = 206

 Score =  134 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 57/207 (27%), Positives = 101/207 (48%), Gaps = 12/207 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G++  +  +  ++DV G   ++    RTLS L + G   TL     +R+D + L
Sbjct: 1   MIASLTGHVTHVGLESAILDVNGFGMLVRATARTLSNL-RTGSTATLLTSMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F ++ SV G+G R+A+ VLS  TATE+  ++   + K   ++PGI  K 
Sbjct: 60  YGFAEPAEREVFEMMLSVSGIGPRIALAVLSVHTATEVERAVATGDDKAFTKVPGIGPKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL GK I         +S    E+       ++    + AL +LG+ +  A  A
Sbjct: 120 ARRIVLELAGKLI---------LSEGQAEENAPAQGIAWKPQVMDALTSLGWSEKDADAA 170

Query: 181 VVSVLKKEKNIAD--DSQIIRLALRAI 205
           + + ++   +         +R  L ++
Sbjct: 171 IDAYVQHNPDAEKEAVGVALRGVLASL 197


>gi|332202100|gb|EGJ16169.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           GA41317]
          Length = 197

 Score =  134 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 96/206 (46%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYAYLKGIITKITAKYIVLETNGIGYILHV-ANPYAYSGQVNQEAQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +     +   ++          +       A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVVAGDDLPAKIA------VQASAENQELEEAMEAMLALGYKATE---- 169

Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205
           +  + K  +   D     I+ AL+ +
Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195


>gi|15902209|ref|NP_357759.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae R6]
 gi|116515482|ref|YP_815689.1| Holliday junction DNA helicase motor protein [Streptococcus
           pneumoniae D39]
 gi|148996605|ref|ZP_01824323.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           SP11-BS70]
 gi|149011051|ref|ZP_01832356.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           SP19-BS75]
 gi|168576389|ref|ZP_02722272.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           MLV-016]
 gi|182683163|ref|YP_001834910.1| holliday junction DNA helicase motor protein [Streptococcus
           pneumoniae CGSP14]
 gi|221231090|ref|YP_002510242.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae ATCC
           700669]
 gi|303255118|ref|ZP_07341194.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           BS455]
 gi|307066862|ref|YP_003875828.1| Holliday junction resolvasome DNA-binding subunit [Streptococcus
           pneumoniae AP200]
 gi|32171637|sp|Q8DRE8|RUVA_STRR6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|122279425|sp|Q04MQ9|RUVA_STRP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560134|sp|B2IS15|RUVA_STRPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254767390|sp|B8ZKD4|RUVA_STRPJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|15457707|gb|AAK98969.1| Holliday junction DNA helicase [Streptococcus pneumoniae R6]
 gi|116076058|gb|ABJ53778.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae D39]
 gi|147757180|gb|EDK64219.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           SP11-BS70]
 gi|147764687|gb|EDK71617.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           SP19-BS75]
 gi|182628497|gb|ACB89445.1| holliday junction DNA helicase motor protein [Streptococcus
           pneumoniae CGSP14]
 gi|183577836|gb|EDT98364.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           MLV-016]
 gi|220673550|emb|CAR68036.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae ATCC
           700669]
 gi|301793458|emb|CBW35831.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           INV104]
 gi|301801130|emb|CBW33803.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           INV200]
 gi|302597948|gb|EFL65018.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           BS455]
 gi|306408399|gb|ADM83826.1| Holliday junction resolvasome, DNA-binding subunit [Streptococcus
           pneumoniae AP200]
          Length = 197

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 96/206 (46%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYAYLKGIITKITAKYIVLETNGIGYILHV-ANPYAYSGQVNQEAQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +     +   ++          +       A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVVAGDGLPAKVA------VQASAENQELEEAMEAMLALGYKATE---- 169

Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205
           +  + K  +   D     I+ AL+ +
Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195


>gi|218264168|ref|ZP_03478052.1| hypothetical protein PRABACTJOHN_03742 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222214|gb|EEC94864.1| hypothetical protein PRABACTJOHN_03742 [Parabacteroides johnsonii
           DSM 18315]
          Length = 197

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 103/205 (50%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I  L    ++++  G+ Y +   + T +      D   ++V   +R+D   L
Sbjct: 1   MIEYIKGEIVELTPARMVLECAGIGYELNISLNTYTFYNGKADG-KVYVYEIIREDAHVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R+ F++L +V GVG   A  +LS ++ +ELV +I  ++   +  + GI  K 
Sbjct: 60  FGFAGIEERELFLMLTTVPGVGPNTARMILSSLSPSELVRAIADKDENSLVAVKGIGTKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K  ++  +                S  + A  A++ALV LG+ +  +  A
Sbjct: 120 AQRILVDLKNKVKAVEGLTTVST------PKTPASNNAVAEEAVAALVMLGFQKAASQKA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++LK   ++A   Q+I+ ALR +
Sbjct: 174 VHTILKGSPSLA-VEQVIKTALRML 197


>gi|296270037|ref|YP_003652669.1| Holliday junction DNA helicase RuvA [Thermobispora bispora DSM
           43833]
 gi|296092824|gb|ADG88776.1| Holliday junction DNA helicase RuvA [Thermobispora bispora DSM
           43833]
          Length = 206

 Score =  134 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 52/212 (24%), Positives = 97/212 (45%), Gaps = 14/212 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +  +  +I+V G   +++C   TL+ L ++G+   L     +R+D + L
Sbjct: 1   MIASVAGKVAAIGPETAVIEVGGFGVLVHCTPATLAGL-RVGEPARLATALVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF SD +R  F  L +V GVG R+A+ +L+  +   L  ++   + K +  +PGI  K 
Sbjct: 60  YGFASDDERAIFESLLTVNGVGPRLALAMLAVHSPNALRTAVASGDVKALTMVPGIGPKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RIM EL+ +            +              +     + LV LGY    A  A
Sbjct: 120 AQRIMLELRDRL-------GPARATAAGMPDGRGGPSPWREQVHAGLVGLGYSARDADEA 172

Query: 181 VVSVLKKEKN------IADDSQIIRLALRAIS 206
           + ++  + +         + + +++ ALR +S
Sbjct: 173 IAAIAHEAEAAEAAGREPEIAALLKSALRVLS 204


>gi|229547070|ref|ZP_04435795.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX1322]
 gi|312952497|ref|ZP_07771365.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0102]
 gi|229307799|gb|EEN73786.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX1322]
 gi|310629593|gb|EFQ12876.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0102]
 gi|315153490|gb|EFT97506.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0031]
 gi|315155061|gb|EFT99077.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0043]
 gi|315158504|gb|EFU02521.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0312]
          Length = 223

 Score =  134 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 88/206 (42%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  +   Y++++  G+ Y I          GK+     L++   +R+D   L
Sbjct: 20  MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 78

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMK 119
           FGF S  ++Q F+ L SV G+G +  + +++ +     L+ +I  ++   + + PG+  K
Sbjct: 79  FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 138

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +++ +LKGK   L S   +           + +       A+ AL  LGY   +   
Sbjct: 139 TAQQMILDLKGKLGELES--SEAAVAAMTVTEVVTTSNQALAEALEALSALGYSDREIKR 196

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
               +    +   D    +  AL+ +
Sbjct: 197 ITKQLEALGETTTDV--YLSNALKFM 220


>gi|29374722|ref|NP_813874.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis V583]
 gi|255974579|ref|ZP_05425165.1| holliday junction DNA helicase RuvA [Enterococcus faecalis T2]
 gi|256956955|ref|ZP_05561126.1| holliday junction DNA helicase RuvA [Enterococcus faecalis DS5]
 gi|256964042|ref|ZP_05568213.1| holliday junction DNA helicase RuvA [Enterococcus faecalis
           HIP11704]
 gi|257078631|ref|ZP_05572992.1| holliday junction DNA helicase RuvA [Enterococcus faecalis JH1]
 gi|257084064|ref|ZP_05578425.1| holliday junction DNA helicase RuvA [Enterococcus faecalis Fly1]
 gi|257087893|ref|ZP_05582254.1| holliday junction DNA helicase RuvA [Enterococcus faecalis D6]
 gi|257418785|ref|ZP_05595779.1| holliday junction DNA helicase ruvA [Enterococcus faecalis T11]
 gi|294780021|ref|ZP_06745400.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis PC1.1]
 gi|300862283|ref|ZP_07108363.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TUSoD
           Ef11]
 gi|44888456|sp|Q839T6|RUVA_ENTFA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|29342180|gb|AAO79946.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis V583]
 gi|255967451|gb|EET98073.1| holliday junction DNA helicase RuvA [Enterococcus faecalis T2]
 gi|256947451|gb|EEU64083.1| holliday junction DNA helicase RuvA [Enterococcus faecalis DS5]
 gi|256954538|gb|EEU71170.1| holliday junction DNA helicase RuvA [Enterococcus faecalis
           HIP11704]
 gi|256986661|gb|EEU73963.1| holliday junction DNA helicase RuvA [Enterococcus faecalis JH1]
 gi|256992094|gb|EEU79396.1| holliday junction DNA helicase RuvA [Enterococcus faecalis Fly1]
 gi|256995923|gb|EEU83225.1| holliday junction DNA helicase RuvA [Enterococcus faecalis D6]
 gi|257160613|gb|EEU90573.1| holliday junction DNA helicase ruvA [Enterococcus faecalis T11]
 gi|294452915|gb|EFG21338.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis PC1.1]
 gi|300848808|gb|EFK76565.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TUSoD
           Ef11]
          Length = 204

 Score =  134 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 89/206 (43%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  +   Y++++  G+ Y I          GK+     L++   +R+D   L
Sbjct: 1   MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMK 119
           FGF S  ++Q F+ L SV G+G +  + +++ +     L+ +I  ++   + + PG+  K
Sbjct: 60  FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +++ +LKGK   L S      +    E   + +       A+ AL  LGY   +   
Sbjct: 120 TAQQMILDLKGKLGELESSEAAVAAMTATEA--VTTSNQALAEALEALSALGYSDREIKR 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
               +    +   D    +  AL+ +
Sbjct: 178 ITKQLEALGETTTDV--YLSNALKFM 201


>gi|323464267|gb|ADX76420.1| Holliday junction DNA helicase RuvA [Staphylococcus
           pseudintermedius ED99]
          Length = 199

 Score =  134 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 95/206 (46%), Gaps = 10/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           M   I G +  L+  +++++   G+ Y I  P  +      +     ++    +R+D   
Sbjct: 1   MYAYISGKLTALHPTHIIVETTSGIGYEIQTP-NSYRFQKNLDQMVKVYTSLIVREDAQL 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF+   ++  F+ L  V G+G + A+ +L+  +  E+  +I  +N   + Q PGI  K
Sbjct: 60  LYGFIDQEEKDMFLSLIKVTGIGPKSALAILAASSPNEVKRAIENENDAYLTQFPGIGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +I+ +LKGK +    V +  +    +++            A+ AL  LGY + +   
Sbjct: 120 TARQIVLDLKGKVVVTEEVSEGLLDIATEQE------DLAVQEALLALEALGYSKRELKK 173

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            V   ++++   +D  + ++  L+ +
Sbjct: 174 -VEKAMQQQI-FSDVDEAVKYGLKQL 197


>gi|315143243|gb|EFT87259.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX2141]
          Length = 230

 Score =  134 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 89/206 (43%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  +   Y++++  G+ Y I          GK+     L++   +R+D   L
Sbjct: 27  MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 85

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMK 119
           FGF S  ++Q F+ L SV G+G +  + +++ +     L+ +I  ++   + + PG+  K
Sbjct: 86  FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 145

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +++ +LKGK   L S      +    E   + +       A+ AL  LGY   +   
Sbjct: 146 TAQQMILDLKGKLGELESSEAAVAAMTATEA--VTTSNQALAEALEALSALGYSDREIKR 203

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
               +    +   D    +  AL+ +
Sbjct: 204 ITKQLEALGETTTDV--YLSNALKFM 227


>gi|15827159|ref|NP_301422.1| Holliday junction DNA helicase RuvA [Mycobacterium leprae TN]
 gi|221229637|ref|YP_002503053.1| Holliday junction DNA helicase RuvA [Mycobacterium leprae Br4923]
 gi|730695|sp|P40832|RUVA_MYCLE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254767378|sp|B8ZUI1|RUVA_MYCLB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|466820|gb|AAA17095.1| ruvA [Mycobacterium leprae]
 gi|13092707|emb|CAC29990.1| Holliday junction DNA helicase component [Mycobacterium leprae]
 gi|219932744|emb|CAR70575.1| Holliday junction DNA helicase component [Mycobacterium leprae
           Br4923]
          Length = 203

 Score =  134 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 54/208 (25%), Positives = 90/208 (43%), Gaps = 12/208 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +I+  G+ Y +      L+ L + G    L     +R+D + L
Sbjct: 1   MIFSVRGEVLEVALDHAVIEAAGIGYRVNATPSALATL-RQGSQARLVTAMVVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F+ L SV GVG R+AM  L+   A  L +++   +   + ++PGI  + 
Sbjct: 60  YGFSDAENRDLFLALLSVSGVGPRLAMATLAVHDAAALRQALADSDVASLTRVPGIGKRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL+ K           +              +   + + ALV LG+   QA  A
Sbjct: 120 AERIVLELRDKV--------GPVGASGLTVGTAADGNAVRGSVVEALVGLGFAAKQAEEA 171

Query: 181 VVSVLKKE---KNIADDSQIIRLALRAI 205
              VL  E         S  +R AL  +
Sbjct: 172 TDQVLDGELGKDGAVATSSALRAALSLL 199


>gi|307276309|ref|ZP_07557435.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX2134]
 gi|312908743|ref|ZP_07767683.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis DAPTO
           512]
 gi|312979206|ref|ZP_07790910.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis DAPTO
           516]
 gi|306506974|gb|EFM76118.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX2134]
 gi|310625342|gb|EFQ08625.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis DAPTO
           512]
 gi|311287971|gb|EFQ66527.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis DAPTO
           516]
 gi|315171308|gb|EFU15325.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX1342]
          Length = 223

 Score =  134 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 88/206 (42%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  +   Y++++  G+ Y I          GK+     L++   +R+D   L
Sbjct: 20  MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 78

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMK 119
           FGF S  ++Q F+ L SV G+G +  + +++ +     L+ +I  ++   + + PG+  K
Sbjct: 79  FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 138

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +++ +LKGK   L S      +        + +       A+ AL  LGY   +   
Sbjct: 139 TAQQMILDLKGKLGELESSEAAVAAMTAT--EVVTTSNQALAEALEALSALGYSDREIKR 196

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
               +    +   D    +  AL+ +
Sbjct: 197 ITKQLEALGETTTDV--YLSNALKFM 220


>gi|289168757|ref|YP_003447026.1| holiday junction DNA helicase RuvA [Streptococcus mitis B6]
 gi|303259227|ref|ZP_07345205.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           SP-BS293]
 gi|303260983|ref|ZP_07346932.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           SP14-BS292]
 gi|303263310|ref|ZP_07349233.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           BS397]
 gi|303265475|ref|ZP_07351375.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           BS457]
 gi|303267967|ref|ZP_07353769.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           BS458]
 gi|288908324|emb|CBJ23166.1| holiday junction DNA helicase RuvA [Streptococcus mitis B6]
 gi|302637820|gb|EFL68306.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           SP14-BS292]
 gi|302639645|gb|EFL70102.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           SP-BS293]
 gi|302642663|gb|EFL73008.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           BS458]
 gi|302644915|gb|EFL75162.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           BS457]
 gi|302647083|gb|EFL77307.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           BS397]
          Length = 197

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 96/206 (46%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYLKGIITKITAKYIVLETNGIGYILHV-ANPYAYSGQVNQEAQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +     +   ++          +       A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVVAGDDLPAKVA------VQASAENQELEEAMEAMLALGYKATE---- 169

Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205
           +  + K  +   D     I+ AL+ +
Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195


>gi|307711076|ref|ZP_07647498.1| holliday junction DNA helicase RuvA [Streptococcus mitis SK321]
 gi|307617038|gb|EFN96216.1| holliday junction DNA helicase RuvA [Streptococcus mitis SK321]
          Length = 197

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 96/206 (46%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI++      +  G+I     ++V   +R+D   L
Sbjct: 1   MYEYLKGIITKITAKYIVLETNGIGYILHV-ANPYAYSGQINQEAQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +     +        K +    +       A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVVAGDDLPA------KVEVQASAENQELEEAMEAMLALGYKATE---- 169

Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205
           +  + K  +   D     I+ AL+ +
Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195


>gi|309775420|ref|ZP_07670423.1| holliday junction DNA helicase RuvA [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916809|gb|EFP62546.1| holliday junction DNA helicase RuvA [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 193

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 97/206 (47%), Gaps = 18/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I     D ++I+  G+ Y +Y        L        L+   H+R+D I L
Sbjct: 1   MIAFIKGIIHSYSNDSLIIENNGIGYRVYVSNPMAVRL---NAEVILYTYQHVREDAITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F+ L SV+GVG + A+G+L    A  ++ +I   + KV+  +PGI  K 
Sbjct: 58  FGFPTMEERDLFLQLISVKGVGPKTALGMLGVCPAKNMIAAIENNDVKVLKGLPGIGAKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK +   + ++                    ++A+ AL  LGY   +  + 
Sbjct: 118 ASQIVLDLKGKLVEEVTELE-------------IKENEQLLDALEALKALGYKNAELNSI 164

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
              +  +E   +D  Q IR  L  ++
Sbjct: 165 KKELSTQEPMTSD--QYIRKGLGILA 188


>gi|42518563|ref|NP_964493.1| Holliday junction DNA helicase RuvA [Lactobacillus johnsonii NCC
           533]
 gi|81668203|sp|Q74KV9|RUVA_LACJO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|41582848|gb|AAS08459.1| Holliday junction DNA helicase RuvA [Lactobacillus johnsonii NCC
           533]
 gi|329666839|gb|AEB92787.1| Holliday junction DNA helicase RuvA [Lactobacillus johnsonii DPC
           6026]
          Length = 192

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 16/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  +   Y+++DV GV Y I CP              T++VE  +R   I L
Sbjct: 1   MFEYLKGIVTKIDPAYIVLDVNGVGYKILCPTPYSY---DENQPATIYVEQVVRDTGITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  D++ F+ L SV G+G + A+ +++      L  +I     K + + PG+  K 
Sbjct: 58  YGFLSLEDKELFLKLLSVSGIGPKSAVAIMAAEDTDSLASAIQNGEVKYLTRFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK                K+      +     +A+ ALV LGY Q +    
Sbjct: 118 ASQIVLDLKGKLGDY-----------VKKSTAAADLTPSLQDALLALVALGYTQKEVDRI 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              + K  +N AD    ++ AL  +
Sbjct: 167 TPKLAKLPENTADG--YVKEALALL 189


>gi|254391315|ref|ZP_05006519.1| holliday junction ATP-dependent DNA helicase ruvA [Streptomyces
           clavuligerus ATCC 27064]
 gi|197705006|gb|EDY50818.1| holliday junction ATP-dependent DNA helicase ruvA [Streptomyces
           clavuligerus ATCC 27064]
          Length = 253

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 97/206 (47%), Gaps = 11/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L     ++ V GV   ++C   TL+ L ++G+   L     +R+D + L
Sbjct: 1   MIAFVSGQVAALAPTTAVVAVGGVGMSVHCTPATLAGL-RVGEEARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+  +   L  ++   + + +  +PGI  K 
Sbjct: 60  YGFADDDERQVFELLQTASGVGPRLAQAMLAVHSPDALRTAVAGGDERALTAVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK +         +        +    +  S++    +AL+ LGY   +A  A
Sbjct: 120 AQKLLLELKDRL-------GEPTGVPGARRGAAAAPASWSDQLHAALIGLGYAGREADEA 172

Query: 181 VVSVLKKEKNIADDSQ---IIRLALR 203
           V +V  +        Q   +++ AL+
Sbjct: 173 VAAVTPQAAAAGAAPQVGVLLKAALQ 198


>gi|218244912|ref|YP_002370283.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 8801]
 gi|257057937|ref|YP_003135825.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 8802]
 gi|226725438|sp|B7JZG7|RUVA_CYAP8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|218165390|gb|ACK64127.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 8801]
 gi|256588103|gb|ACU98989.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 8802]
          Length = 210

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 100/214 (46%), Gaps = 13/214 (6%)

Query: 1   MIGKIKGNIEGLYEDY-----VLIDVQGVCYIIYCPIRTLSCLGKIG-DFCTLFVETHMR 54
           MI  +KGN     ++      ++++V  V Y +  P R    L +   +   +F    ++
Sbjct: 1   MISYLKGNPIETLKNTQNRILLILEVNQVGYEMQIPSRFARELSQNPRETLQVFTHLQVK 60

Query: 55  QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114
            +Q  L+GF +  +R+ F  L SV G+GA++A+ ++  +   ELV++I+  N + ++Q P
Sbjct: 61  DEQPILYGFATAAERELFRQLVSVSGIGAQLAIALIDTLGLEELVQAIVNGNIRTLSQTP 120

Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           G+  K A RI  ELK K      +V   +   +              +    L+ LGY  
Sbjct: 121 GVGQKTAERIALELKTKLSQWRKLVGITLPSTS-----AIPSLEVLEDVEMTLLALGYTN 175

Query: 175 DQATTAVVSVLKKEKNIADD--SQIIRLALRAIS 206
           ++   A+ ++ +  + + +    + IR A+  +S
Sbjct: 176 EEINKAISTLSQDNQMLKNTNSEEWIREAIAWLS 209


>gi|75909032|ref|YP_323328.1| Holliday junction DNA helicase RuvA [Anabaena variabilis ATCC
           29413]
 gi|123758778|sp|Q3M9A3|RUVA_ANAVT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|75702757|gb|ABA22433.1| Holliday junction DNA helicase subunit RuvA [Anabaena variabilis
           ATCC 29413]
          Length = 213

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 61/213 (28%), Positives = 93/213 (43%), Gaps = 14/213 (6%)

Query: 1   MIGKIKGNIEGLYE---DYVLI--DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55
           MI  +KG + G+     + V++  +V G+ Y +  P R    L   GD   +F    +R+
Sbjct: 1   MISYLKGIVAGIQNVGSNRVILTLEVNGMGYDLQIPQRLAKQLPTTGDLVQIFTHYQVRE 60

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           +   L+GF S  +R  F  L SV GVGA  A+ +L  +   +LV++II  N +++ Q PG
Sbjct: 61  EIPLLYGFSSPAERDLFRHLLSVSGVGAASAIALLDTLELPDLVQAIIAANVQILIQAPG 120

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           +  KIA RI  ELK K I                 A     P         L  LGY   
Sbjct: 121 VGKKIADRICLELKAKLIEWR-------KSAGFFVATEGPAPGILEEVQMTLFALGYTAH 173

Query: 176 QATTAVVSVLKK--EKNIADDSQIIRLALRAIS 206
           + + A+  V +       A     I+ A+  +S
Sbjct: 174 EVSHALHVVSEDIGLPKDAYVEDWIKQAIAHLS 206


>gi|320093778|ref|ZP_08025625.1| crossover junction ATP-dependent DNA helicase RuvA [Actinomyces sp.
           oral taxon 178 str. F0338]
 gi|319979279|gb|EFW10775.1| crossover junction ATP-dependent DNA helicase RuvA [Actinomyces sp.
           oral taxon 178 str. F0338]
          Length = 199

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 92/205 (44%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +E +  D V++   GV + +         L + GD   +     +R+D + L
Sbjct: 1   MIALLRGVVESIGLDQVVVSAGGVGFGVRVTPAHAQSLTR-GDEAVVHTAMVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L  V G+G + A+  L+ +   +L  ++  Q+   + +IPG+  K 
Sbjct: 60  YGFASADERDVFERLMGVTGIGPKTALAALAVLRPDDLRRAVRDQDIATLQKIPGVGRKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+  E+ GK  + + + +Q                       +ALV LG+ + QA  A
Sbjct: 120 AQRMALEVGGKLGAPAQLPEQGGPA-------AAPAGEVEAEVRAALVGLGWSEAQAAKA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++          S ++R AL ++
Sbjct: 173 VDAL---SGQGLGASDMLRSALVSL 194


>gi|256855044|ref|ZP_05560405.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis T8]
 gi|307291531|ref|ZP_07571408.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0411]
 gi|256709557|gb|EEU24604.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis T8]
 gi|306497396|gb|EFM66936.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0411]
 gi|315028754|gb|EFT40686.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX4000]
          Length = 230

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 87/206 (42%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  +   Y++++  G+ Y I          GK+     L++   +R+D   L
Sbjct: 27  MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 85

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMK 119
           FGF S  ++Q F+ L SV G+G +  + +++ +     L+ +I  ++   + + PG+  K
Sbjct: 86  FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 145

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +++ +LKGK   L S      +    E             A+ AL  LGY   +   
Sbjct: 146 TAQQMILDLKGKLGELESSEAAVAAMTATEALTTS--NQALAEALEALSALGYSDREIKR 203

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
               +    +   D    +  AL+ +
Sbjct: 204 ITKQLEALGETTTDV--YLSNALKFM 227


>gi|307710210|ref|ZP_07646653.1| holliday junction DNA helicase RuvA [Streptococcus mitis SK564]
 gi|307618972|gb|EFN98105.1| holliday junction DNA helicase RuvA [Streptococcus mitis SK564]
          Length = 197

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 96/206 (46%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI+Y      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYLKGIITKITAKYIVLETNGIGYILYV-ANPYAYSGQVNQEAQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +     +   ++          +       A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVVSGDDLPAKVA------VQASAENQELEEAMEAMLALGYKATE---- 169

Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205
           +  + K  +   D     I+ AL+ +
Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195


>gi|86740076|ref|YP_480476.1| Holliday junction DNA helicase subunit RuvA [Frankia sp. CcI3]
 gi|86566938|gb|ABD10747.1| Holliday junction DNA helicase subunit RuvA [Frankia sp. CcI3]
          Length = 247

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 84/186 (45%), Gaps = 2/186 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L     +I+V GV  +++C   TLS L ++G+  +L     +R+ ++ L
Sbjct: 1   MIASLAGTVTALTPLSAVIEVGGVGLLVHCSPSTLSRL-RVGESASLATTLIVRETELTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F +LQS  GVG ++A  VL       +  ++  ++  V+ ++PGI  K 
Sbjct: 60  YGFADADARDVFEILQSAAGVGPKLAQAVLGVHDPDTVRRAVAEEDLAVLTKVPGIGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMS-CVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A RI+ +L+ +                +  +         A     ALV LGY   +A  
Sbjct: 120 AQRIVLDLRDRLGPPGDGAPLPGPRLTSGPEPMPADAVGVAATVREALVGLGYSGREADA 179

Query: 180 AVVSVL 185
           AV   L
Sbjct: 180 AVSRAL 185


>gi|148657871|ref|YP_001278076.1| Holliday junction DNA helicase RuvA [Roseiflexus sp. RS-1]
 gi|166200257|sp|A5UZS3|RUVA_ROSS1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|148569981|gb|ABQ92126.1| Holliday junction DNA helicase subunit RuvA [Roseiflexus sp. RS-1]
          Length = 197

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 104/206 (50%), Gaps = 11/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  +  D+V+++  G+ ++IY P   ++ LG IG    LF    +R+D + L
Sbjct: 1   MIASIRGILIAVAADHVVVETGGIGWMIYAPRPVIAALGDIGATVRLFTYLLVREDSLTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +   RQ F  L SV GVG + A+ +LS  T  EL  +I   +   +A+ P I  K+
Sbjct: 61  YGFETVEQRQLFETLLSVTGVGPQAALNLLSSGTTDELRLAIATGDVTRLARTPRIGKKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK          ++  +    A   ++ +       AL++LG+   +A  A
Sbjct: 121 AERLVLELKGKI---------NVKGLPTGAAVTPAVAAANAELSEALISLGFTDAEAAAA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + ++        D  + +RLALR  S
Sbjct: 172 IAALPSDAPP--DLEERVRLALRYFS 195


>gi|34556867|ref|NP_906682.1| Holliday junction DNA helicase RuvA [Wolinella succinogenes DSM
           1740]
 gi|44888365|sp|Q7MA70|RUVA_WOLSU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|34482582|emb|CAE09582.1| PUTATIVE HOLLIDAY JUNCTION DNA HELICASE [Wolinella succinogenes]
          Length = 189

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 97/205 (47%), Gaps = 20/205 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KGNIE      + ++V GV Y I+  I T + LG+      L +   +R++   L
Sbjct: 1   MIVALKGNIEKKEPTRLWLEVGGVTYEIFISIHTSAALGE--KEARLLITHLIREEAWSL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + +++ F  L  + GVG + A+ +LS  T     + I  Q+ K + ++PGI  K 
Sbjct: 59  YGFAEEAEKRVFDTLIKINGVGPKAALAILSTYTPPTFAQIIQAQDVKALQRVPGIGPKS 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RIM EL G ++SL             ++    S P     +  AL +LG+  +    A
Sbjct: 119 AGRIMVELAGFSLSL-------------QEGSKASTPPVFEESRLALESLGFKSELIAKA 165

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++           +II+ AL+ +
Sbjct: 166 LQNI-----QATTTQEIIKEALKKL 185


>gi|163846991|ref|YP_001635035.1| Holliday junction DNA helicase RuvA [Chloroflexus aurantiacus
           J-10-fl]
 gi|222524813|ref|YP_002569284.1| Holliday junction DNA helicase RuvA [Chloroflexus sp. Y-400-fl]
 gi|189045746|sp|A9WA87|RUVA_CHLAA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254766952|sp|B9LCT8|RUVA_CHLSY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|163668280|gb|ABY34646.1| Holliday junction DNA helicase RuvA [Chloroflexus aurantiacus
           J-10-fl]
 gi|222448692|gb|ACM52958.1| Holliday junction DNA helicase RuvA [Chloroflexus sp. Y-400-fl]
          Length = 195

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 58/204 (28%), Positives = 99/204 (48%), Gaps = 13/204 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G I+ +  D+++++  GV  +IY P  TL+ +G+IG    L+    +R+D + L
Sbjct: 1   MIASIRGIIQSIGIDHLIVETGGVGLLIYAPRSTLNAVGQIGSETFLYTLLIVREDALTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F  L  V GVG ++A+ +LS  +  E+ +SI   +   +A++PGI  K 
Sbjct: 61  YGFSDPAQRNLFEQLIGVSGVGPKIALNLLSSGSPDEIQKSIAGGDIARLARVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL+GK                       ++ +        L++LGY   +A  A
Sbjct: 121 AERIVLELRGKIDLRQLS-----------GTTPGNVSTLDRELTDILISLGYSATEAAAA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           + ++           + +RLALR 
Sbjct: 170 IAALPGDAPP--TLEERLRLALRY 191


>gi|255971607|ref|ZP_05422193.1| holliday junction DNA helicase RuvA [Enterococcus faecalis T1]
 gi|257421400|ref|ZP_05598390.1| holliday junction DNA helicase ruvA [Enterococcus faecalis X98]
 gi|255962625|gb|EET95101.1| holliday junction DNA helicase RuvA [Enterococcus faecalis T1]
 gi|257163224|gb|EEU93184.1| holliday junction DNA helicase ruvA [Enterococcus faecalis X98]
 gi|323479298|gb|ADX78737.1| holliday junction DNA helicase RuvA [Enterococcus faecalis 62]
          Length = 204

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 88/206 (42%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  +   Y++++  G+ Y I          GK+     L++   +R+D   L
Sbjct: 1   MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMK 119
           FGF S  ++Q F+ L SV G+G +  + +++ +     L+ +I  ++   + + PG+  K
Sbjct: 60  FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +++ +LKGK   L S   +           + +       A+ AL  LGY   +   
Sbjct: 120 TAQQMILDLKGKLGELES--SEAAVAAMTVTEVVTTSNQALAEALEALSALGYSDREIKR 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
               +    +   D    +  AL+ +
Sbjct: 178 ITKQLEALGETTTDV--YLSNALKFM 201


>gi|262037466|ref|ZP_06010926.1| holliday junction DNA helicase RuvA [Leptotrichia goodfellowii
           F0264]
 gi|261748501|gb|EEY35880.1| holliday junction DNA helicase RuvA [Leptotrichia goodfellowii
           F0264]
          Length = 213

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 57/211 (27%), Positives = 103/211 (48%), Gaps = 8/211 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +     DYV +D+ G+ Y I+  ++T   LG+ G    L+V TH+++D I  
Sbjct: 1   MFEYIFGELTVKKIDYVALDINGLAYKIFISLKTFEALGETGQDEKLYVHTHVKEDDISF 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ +R+ F  L S  GVG ++ + +LS     +++  +I  NSK+  ++PG+  K 
Sbjct: 61  YGFKTENERELFKALISTSGVGPKLGLAILSTYNVKDVINIVIESNSKLFTKVPGLGDKK 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS------FAINAISALVNLGYGQ 174
           A +I+ +LK K   L+ +   + +    +   I S  S         +   AL +LGY  
Sbjct: 121 AQKIILDLKDKVKKLNIIETYNENGEISKGNPIVSDTSNTKILLMKEDIKLALESLGYLN 180

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
              +  +    ++   I D  + I+  L+ I
Sbjct: 181 ADVSKWIKD--EELSQINDIGEAIKSILQKI 209


>gi|17227871|ref|NP_484419.1| Holliday junction DNA helicase RuvA [Nostoc sp. PCC 7120]
 gi|20455248|sp|Q8YZT2|RUVA_ANASP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|17129720|dbj|BAB72333.1| holliday junction DNA helicase [Nostoc sp. PCC 7120]
          Length = 213

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 60/213 (28%), Positives = 93/213 (43%), Gaps = 14/213 (6%)

Query: 1   MIGKIKGNIEGLYE---DYVLI--DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55
           MI  +KG + G+     + V++  +V G+ Y +  P R    L   GD   +F    +R+
Sbjct: 1   MISYLKGIVAGIQNVGSNRVILTLEVNGMGYDLQIPQRLAKQLPTTGDLVQIFTHYQVRE 60

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           +   L+GF S  +R  F  L SV GVGA  A+ +L  +   +LV++II  N +++ Q PG
Sbjct: 61  EIPLLYGFSSPAERDLFRHLLSVSGVGAASAIALLDTLELPDLVQAIIAANVQILIQAPG 120

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           +  KIA R+  ELK K I                 A     P         L  LGY   
Sbjct: 121 VGKKIAERVCLELKAKLIEWR-------KSAGFFVATEGPAPGILEEVQMTLFALGYTAH 173

Query: 176 QATTAVVSVLKK--EKNIADDSQIIRLALRAIS 206
           + + A+  V +       A     I+ A+  +S
Sbjct: 174 EVSHALHVVSEDIGLPKDAYVEDWIKQAIAHLS 206


>gi|256618467|ref|ZP_05475313.1| holliday junction DNA helicase RuvA [Enterococcus faecalis ATCC
           4200]
 gi|256761914|ref|ZP_05502494.1| holliday junction DNA helicase RuvA [Enterococcus faecalis T3]
 gi|256960754|ref|ZP_05564925.1| holliday junction DNA helicase RuvA [Enterococcus faecalis Merz96]
 gi|257081405|ref|ZP_05575766.1| holliday junction DNA helicase RuvA [Enterococcus faecalis E1Sol]
 gi|257088548|ref|ZP_05582909.1| holliday junction DNA helicase ruvA [Enterococcus faecalis CH188]
 gi|256597994|gb|EEU17170.1| holliday junction DNA helicase RuvA [Enterococcus faecalis ATCC
           4200]
 gi|256683165|gb|EEU22860.1| holliday junction DNA helicase RuvA [Enterococcus faecalis T3]
 gi|256951250|gb|EEU67882.1| holliday junction DNA helicase RuvA [Enterococcus faecalis Merz96]
 gi|256989435|gb|EEU76737.1| holliday junction DNA helicase RuvA [Enterococcus faecalis E1Sol]
 gi|256997360|gb|EEU83880.1| holliday junction DNA helicase ruvA [Enterococcus faecalis CH188]
          Length = 204

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 88/206 (42%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  +   Y++++  G+ Y I          GK+     L++   +R+D   L
Sbjct: 1   MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMK 119
           FGF S  ++Q F+ L SV G+G +  + +++ +     L+ +I  ++   + + PG+  K
Sbjct: 60  FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +++ +LKGK   L S      +        + +       A+ AL  LGY   +   
Sbjct: 120 TAQQMILDLKGKLGELESSEAAVAAMTAT--EVVTTSNQALAEALEALSALGYSDREIKR 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
               +    +   D    +  AL+ +
Sbjct: 178 ITKQLEALGETTTDV--YLSNALKFM 201


>gi|312903815|ref|ZP_07762987.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0635]
 gi|310632759|gb|EFQ16042.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0635]
 gi|315160794|gb|EFU04811.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0645]
 gi|315168284|gb|EFU12301.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX1341]
 gi|315579775|gb|EFU91966.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0630]
          Length = 230

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 88/206 (42%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  +   Y++++  G+ Y I          GK+     L++   +R+D   L
Sbjct: 27  MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 85

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMK 119
           FGF S  ++Q F+ L SV G+G +  + +++ +     L+ +I  ++   + + PG+  K
Sbjct: 86  FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 145

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +++ +LKGK   L S      +        + +       A+ AL  LGY   +   
Sbjct: 146 TAQQMILDLKGKLGELESSEAAVAAMTAT--EVVTTSNQALAEALEALSALGYSDREIKR 203

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
               +    +   D    +  AL+ +
Sbjct: 204 ITKQLEALGETTTDV--YLSNALKFM 227


>gi|227888712|ref|ZP_04006517.1| crossover junction endoribonuclease subunit A [Lactobacillus
           johnsonii ATCC 33200]
 gi|227850739|gb|EEJ60825.1| crossover junction endoribonuclease subunit A [Lactobacillus
           johnsonii ATCC 33200]
          Length = 192

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 96/205 (46%), Gaps = 16/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  +Y  Y+++DV GV Y I CP              T++VE  +R   I L
Sbjct: 1   MFEYLKGIVTKIYPAYIVLDVNGVGYKILCPTPYSY---DENQPATIYVEQVVRDTGITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  D++ F+ L SV G+G + A+ +++      L  +I     K + + PG+  K 
Sbjct: 58  YGFLSLEDKELFLKLLSVSGIGPKSAVAIMAAEDTDSLASAIQNGEVKYLTRFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK                K+ A    +     +A+ ALV LGY Q +    
Sbjct: 118 ASQIVLDLKGKLGDY-----------VKKSAAAADLTPSLQDALLALVALGYTQKEVDRI 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              + K  +N AD    ++ AL  +
Sbjct: 167 TPKLAKLPENTADG--YVKEALALL 189


>gi|148983581|ref|ZP_01816900.1| Holliday junction DNA helicase motor protein [Streptococcus
           pneumoniae SP3-BS71]
 gi|149017853|ref|ZP_01834312.1| Holliday junction DNA helicase motor protein [Streptococcus
           pneumoniae SP23-BS72]
 gi|168483820|ref|ZP_02708772.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           CDC1873-00]
 gi|168492137|ref|ZP_02716280.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           CDC0288-04]
 gi|194397075|ref|YP_002036885.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae G54]
 gi|225853792|ref|YP_002735304.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae JJA]
 gi|225855950|ref|YP_002737461.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           P1031]
 gi|225858040|ref|YP_002739550.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           70585]
 gi|226698742|sp|B5E6D0|RUVA_STRP4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254767389|sp|C1CAI9|RUVA_STRP7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254767392|sp|C1CBY3|RUVA_STRZJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254767393|sp|C1CI73|RUVA_STRZP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|147923728|gb|EDK74840.1| Holliday junction DNA helicase motor protein [Streptococcus
           pneumoniae SP3-BS71]
 gi|147931417|gb|EDK82395.1| Holliday junction DNA helicase motor protein [Streptococcus
           pneumoniae SP23-BS72]
 gi|172042891|gb|EDT50937.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           CDC1873-00]
 gi|183573620|gb|EDT94148.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           CDC0288-04]
 gi|194356742|gb|ACF55190.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae G54]
 gi|225721170|gb|ACO17024.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           70585]
 gi|225722475|gb|ACO18328.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae JJA]
 gi|225726352|gb|ACO22204.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           P1031]
 gi|301799335|emb|CBW31870.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           OXC141]
          Length = 197

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 96/206 (46%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYAYLKGIITKITAKYIVLETNGIGYILHV-ANPYAYSGQVNQEDQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +     +   ++          +       A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVVAGDDLPAKVA------VQASAENQELEEAMEAMLALGYKATE---- 169

Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205
           +  + K  +   D     I+ AL+ +
Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195


>gi|306828753|ref|ZP_07461945.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           mitis ATCC 6249]
 gi|304428931|gb|EFM32019.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           mitis ATCC 6249]
          Length = 197

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 97/206 (47%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYLKGIITKITAKYIVLEANGIGYILHV-ANPYAYSGQVNQETQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +  S  +   ++          +       A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVVASDDLPSKVA------VQTSAENQELEEAMEAMLALGYKATE---- 169

Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205
           +  + K  +   D     I+ AL+ +
Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195


>gi|302866772|ref|YP_003835409.1| Holliday junction DNA helicase RuvA [Micromonospora aurantiaca ATCC
           27029]
 gi|315503187|ref|YP_004082074.1| holliday junction DNA helicase ruva [Micromonospora sp. L5]
 gi|302569631|gb|ADL45833.1| Holliday junction DNA helicase RuvA [Micromonospora aurantiaca ATCC
           27029]
 gi|315409806|gb|ADU07923.1| Holliday junction DNA helicase RuvA [Micromonospora sp. L5]
          Length = 200

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 100/206 (48%), Gaps = 11/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     D+ +++V G+   + C   TL+ L ++G    L     +R+D + L
Sbjct: 1   MIASVRGTVTATGPDHAVVEVGGIGLAVQCAPGTLADL-RVGQPARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D  +Q F LLQ+  GVG R+A  VL+  T   + ++I   ++  + ++PGI  K 
Sbjct: 60  YGFADDDAKQLFELLQTASGVGPRLAQAVLAVHTPDAVRKAIANADTAALTRVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +   +          V  + A   +  ++      ALV LG+   QA  A
Sbjct: 120 AERLVLELRDRVGPV---------PVGADGAAGVTAGAWPEQVRQALVGLGWTAGQAEQA 170

Query: 181 VVSVLKK-EKNIADDSQIIRLALRAI 205
           V +V +  +        +++ A+R +
Sbjct: 171 VAAVAETVDGETPPVPVLLKQAIRLL 196


>gi|322375071|ref|ZP_08049585.1| holliday junction DNA helicase RuvA [Streptococcus sp. C300]
 gi|321280571|gb|EFX57610.1| holliday junction DNA helicase RuvA [Streptococcus sp. C300]
          Length = 197

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 95/206 (46%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYLKGIITKITAKYIVLEANGIGYILHV-ANPYAYSGQVNQEAQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK       V    +   K      +       A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKV------VVASDALPAKVAVQASAENQELEEAMEAMLALGYKATE---- 169

Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205
           +  + K  +   D     I+ AL+ +
Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195


>gi|289178595|gb|ADC85841.1| RuvA [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 232

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 58/210 (27%), Positives = 100/210 (47%), Gaps = 12/210 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG +KG +E +     ++DV GV + +  P   L+ +  +G    ++    + QD I L
Sbjct: 26  MIGMLKGRVESVDTSNAVVDVHGVGFELRMPSNDLTAM-HMGQDVKIYTSMSVSQDAITL 84

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL    ++ F+ LQ V GVG +VA+ +LS +   +L ++I   + K +++ PG+  K 
Sbjct: 85  FGFLDARSKRMFLQLQKVSGVGPKVALSLLSTLAPDDLAQAIHDGDDKALSRAPGLGRKG 144

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELKG      S+    +                    +  L++LG+ Q  A  A
Sbjct: 145 AQKIILELKG------SIDVDKIETGEPTSTQRIPTDKGVEQVVEGLMSLGWKQADAQQA 198

Query: 181 VVSVLKKEKNIADDSQ-----IIRLALRAI 205
           V SV+          +     ++RLAL ++
Sbjct: 199 VDSVISSSGIALPLEEGNVPTVLRLALTSL 228


>gi|225860211|ref|YP_002741720.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298230115|ref|ZP_06963796.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298255022|ref|ZP_06978608.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298501981|ref|YP_003723921.1| crossover junction endoribonuclease subunit A [Streptococcus
           pneumoniae TCH8431/19A]
 gi|254767394|sp|C1CP48|RUVA_STRZT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|225726584|gb|ACO22435.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298237576|gb|ADI68707.1| crossover junction endoribonuclease subunit A [Streptococcus
           pneumoniae TCH8431/19A]
 gi|327390587|gb|EGE88927.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           GA04375]
          Length = 197

 Score =  133 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 96/206 (46%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYAYLKGIITKITAKYIVLETNGIGYILHV-ANPYAYSGQVNQEDQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +     +   ++          +       A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVVAGDDLPAKIA------VQASAENQELEEAMEAMLALGYKATE---- 169

Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205
           +  + K  +   D     I+ AL+ +
Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195


>gi|213163229|ref|ZP_03348939.1| Holliday junction DNA helicase motor protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
          Length = 174

 Score =  133 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/175 (25%), Positives = 80/175 (45%), Gaps = 3/175 (1%)

Query: 30  CPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGV 89
            P+     L + G    +F    +R+D   L+GF +  +R  F  L    GVG ++A+ +
Sbjct: 1   MPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIKTNGVGPKLALAI 60

Query: 90  LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKE 149
           LS ++A + V ++  +    + ++PGI  K A R++ E+K +   L   +      +   
Sbjct: 61  LSGMSAQQFVNAVEREELGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTPAVDLVLT 120

Query: 150 QAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204
                +       A++ALV LGY   +A+  V  + +     A    +IR ALRA
Sbjct: 121 SPASPTSEDAEQEAVAALVALGYKPQEASRMVSKIAR---PDASSETLIRDALRA 172


>gi|290961821|ref|YP_003493003.1| Holliday junction DNA helicase [Streptomyces scabiei 87.22]
 gi|260651347|emb|CBG74469.1| holliday junction DNA helicase [Streptomyces scabiei 87.22]
          Length = 201

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/209 (25%), Positives = 93/209 (44%), Gaps = 14/209 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L  D  +++V G+   + C   TLS L + G    L     +R+D + L
Sbjct: 1   MIAFVSGPVAALAPDSAVVEVGGIGIAVQCTPNTLSGL-RRGQQAKLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+ D +RQ F LLQ+  GVG R+A  +L+  T   L  ++   + K +  +PGI  + 
Sbjct: 60  YGFVDDDERQVFELLQTASGVGPRLAQAMLAVHTPDALRRAVATADEKALIAVPGIGKRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD---QA 177
           A +++ ELK +              V            +     +AL+ LGY      +A
Sbjct: 120 AQKLLLELKDRLGE----------PVGAPAVGTPVTQGWRDQLHAALIGLGYATREADEA 169

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
             AV    +         Q+++ AL+ ++
Sbjct: 170 VAAVAPQAEAAPGTPQVGQLLKAALQTLN 198


>gi|332712357|ref|ZP_08432284.1| holliday junction DNA helicase subunit RuvA [Lyngbya majuscula 3L]
 gi|332348831|gb|EGJ28444.1| holliday junction DNA helicase subunit RuvA [Lyngbya majuscula 3L]
          Length = 211

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 53/215 (24%), Positives = 93/215 (43%), Gaps = 14/215 (6%)

Query: 1   MIGKIKGNIEGLYEDY-----VLIDVQGVCYIIYCPIRTLSCLGKIGDF--CTLFVETHM 53
           MI  +KG +  + +       +++DV  + Y I    R    L          +F    +
Sbjct: 1   MISYLKGTVASIQKSTGNRVTLILDVNYIGYEIQITRRLSQELPVALSEKTVQIFTHLQI 60

Query: 54  RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113
           R++Q  L+GF S  +R  F  L SV G+GA++A+ +L  +    LV++I+  N + +++ 
Sbjct: 61  REEQQVLYGFASAAERDLFRQLVSVNGIGAQLAIALLDTLGLPNLVQAIVTGNIRALSKT 120

Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           PG+  K A RI  ELK K      V + +              P    +    L+ LGY 
Sbjct: 121 PGVGSKTAERIALELKTKLAQWHKVSEVESPLSAN-----GLSPGIQEDVEMTLLALGYE 175

Query: 174 QDQATTAVVSVLKKE--KNIADDSQIIRLALRAIS 206
            D+   A+ ++ +        +    IR A+  +S
Sbjct: 176 NDEIAQALHAISEDTQVAKSKNAEDWIREAIAWLS 210


>gi|183601646|ref|ZP_02963016.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219683820|ref|YP_002470203.1| Holliday junction DNA helicase RuvA [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|241190856|ref|YP_002968250.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|241196262|ref|YP_002969817.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|254766944|sp|B8DUE8|RUVA_BIFA0 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|183219252|gb|EDT89893.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219621470|gb|ACL29627.1| Holliday junction DNA helicase RuvA [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|240249248|gb|ACS46188.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240250816|gb|ACS47755.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|295793845|gb|ADG33380.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 207

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 58/210 (27%), Positives = 100/210 (47%), Gaps = 12/210 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG +KG +E +     ++DV GV + +  P   L+ +  +G    ++    + QD I L
Sbjct: 1   MIGMLKGRVESVDTSNAVVDVHGVGFELRMPSNDLTAM-HMGQDVKIYTSMSVSQDAITL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL    ++ F+ LQ V GVG +VA+ +LS +   +L ++I   + K +++ PG+  K 
Sbjct: 60  FGFLDARSKRMFLQLQKVSGVGPKVALSLLSTLAPDDLAQAIHDGDDKALSRAPGLGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELKG      S+    +                    +  L++LG+ Q  A  A
Sbjct: 120 AQKIILELKG------SIDVDKIETGEPTSTQRIPTDKGVEQVVEGLMSLGWKQADAQQA 173

Query: 181 VVSVLKKEKNIADDSQ-----IIRLALRAI 205
           V SV+          +     ++RLAL ++
Sbjct: 174 VDSVISSSGIALPLEEGNVPTVLRLALTSL 203


>gi|297566125|ref|YP_003685097.1| Holliday junction DNA helicase RuvA [Meiothermus silvanus DSM 9946]
 gi|296850574|gb|ADH63589.1| Holliday junction DNA helicase RuvA [Meiothermus silvanus DSM 9946]
          Length = 193

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 99/205 (48%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  +KG      E+ V++ V G    ++CP  TL+ L + G+   L  +  +R+D + L
Sbjct: 1   MVRYLKGTALRKTENSVILLVGGFGLEVFCPTTTLTHLPEEGE-IALHTKLVVREDDLSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF      + F +L  V GVG +V + +LS ++   L  ++   + +++    G+  K+
Sbjct: 60  YGFADQRSLELFEMLLGVSGVGPKVGLNLLSSLSPALLARALADGDIRLLTGAQGVGRKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  EL+GK                  +A           A  ALV LG+ ++Q  +A
Sbjct: 120 AERIALELRGKVP-----------PHLMGEAGPILRRPQTEEAELALVTLGFRENQVRSA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  ++++    A   +IIRLAL+A+
Sbjct: 169 VAQIVQQNPE-ASTQEIIRLALKAL 192


>gi|295398601|ref|ZP_06808633.1| crossover junction ATP-dependent DNA helicase RuvA [Aerococcus
           viridans ATCC 11563]
 gi|294973202|gb|EFG48997.1| crossover junction ATP-dependent DNA helicase RuvA [Aerococcus
           viridans ATCC 11563]
          Length = 210

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/210 (24%), Positives = 95/210 (45%), Gaps = 8/210 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGD--FCTLFVETHMRQDQI 58
           M   + G +E +Y D V+++  G+ Y IY          KIG      +++   + ++ I
Sbjct: 1   MYEFMIGQVESVYPDAVILETGGIGYYIYM-ANPYRFTDKIGQDRPVKIWLYQSVSENDI 59

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
           RL+GF S  ++  F+ L SV G+G + A+ +LS      LV +I  +++  + + PG+  
Sbjct: 60  RLYGFKSQEEKIIFLQLISVSGIGPKSALSILSLDDNAGLVAAIQAEDNAFLMKFPGVGK 119

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNK---EQAHICSMPSFAINAISALVNLGYGQD 175
           K A +I+ +LK K   + +          +    Q        F      A+ +LGY Q 
Sbjct: 120 KTAGQIVLDLKEKLPKVLAESPSSALFKQESLDIQGPDQVNLPFMHELEEAMASLGYSQR 179

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           +    V +       +   ++ IR+AL+ I
Sbjct: 180 EINRVVKNA--DFTGVTATAEAIRIALKFI 207


>gi|306826018|ref|ZP_07459354.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sp. oral taxon 071 str. 73H25AP]
 gi|304431734|gb|EFM34714.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sp. oral taxon 071 str. 73H25AP]
          Length = 197

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 97/206 (47%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYLKGIITKITAKYIVLEANGIGYILHV-ANPYAYSGQVNQENQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +  S  +   ++          +       A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVVASDDLPAKVA------VQASNENQELEEAMEAMLALGYKATE---- 169

Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205
           +  + K  +   D     I+ AL+ +
Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195


>gi|310778214|ref|YP_003966547.1| Holliday junction DNA helicase subunit RuvA [Ilyobacter polytropus
           DSM 2926]
 gi|309747537|gb|ADO82199.1| Holliday junction DNA helicase subunit RuvA [Ilyobacter polytropus
           DSM 2926]
          Length = 199

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 93/205 (45%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +     +Y ++D+ G+ Y +   ++T   L  +G+   L++  ++R+D  +L
Sbjct: 1   MFEYLKGELTLKKLEYAVVDINGIGYKVNISLKTYEKLV-LGEKTKLYIYNYIREDMFKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF  + +R  F +L +V G+G  +A+ +LS     ++ + +  ++ K++ ++P + +K 
Sbjct: 60  IGFAEEKERNLFEILINVNGIGVSLALAILSTFDVEDMRDIVSREDVKLLTKVPKLGIKK 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ++K K   L        S  +K                 AL +LGY +      
Sbjct: 120 AQKLIVDVKDKLKGLQLEEGASGSTASK-------GIQIEEELYMALESLGYSKKDIEKL 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V    ++          I+  L+ I
Sbjct: 173 VTR--EEIMAYEGIEAAIKDVLKKI 195


>gi|269122262|ref|YP_003310439.1| Holliday junction DNA helicase RuvA [Sebaldella termitidis ATCC
           33386]
 gi|268616140|gb|ACZ10508.1| Holliday junction DNA helicase RuvA [Sebaldella termitidis ATCC
           33386]
          Length = 205

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 103/206 (50%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I+G +     DYV ++V G+ Y I+  ++T   L +  D   LF+ T++++D   L
Sbjct: 1   MFEYIRGELTVKKIDYVALEVNGIAYKIFISLKTYDMLTE--DTEKLFIYTNVKEDDFSL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ +R+ F  L S+ GVG ++ + +LS     E+++ +I +N+K++ ++PG+  K 
Sbjct: 59  YGFKTESERELFKALVSISGVGPKLGLAILSTFNTQEVIDIVIEENAKLLVRVPGLGQKK 118

Query: 121 ASRIMTELKGKAISLSSV-VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A +++ +LK K   L+ + + QD S                 +   AL +LGY     + 
Sbjct: 119 AQKLIVDLKDKVKKLNVIGIAQDGSHDTASSVSSTKALIMKEDLKLALESLGYSNADVSK 178

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            +    ++ +        IR  L+ I
Sbjct: 179 WIKD--EEIEKYERVEDAIRDILKKI 202


>gi|212696229|ref|ZP_03304357.1| hypothetical protein ANHYDRO_00765 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676858|gb|EEB36465.1| hypothetical protein ANHYDRO_00765 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 197

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 100/205 (48%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G I+ + E+  +I+   + Y+I     T+  L +I +   +F + ++R+D I L
Sbjct: 1   MISYIIGEIKYIGEENFIIENNNMGYLINSSFNTIKTL-EINNEFKIFTKMNVREDDISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  + + F LL SV  +G + A+ VLS +   ++  +I+  +   + +  GI  K 
Sbjct: 60  FGFSSKDELEVFELLTSVSTIGPKNAIAVLSTLNVDKIKFAIVNNDIDTLTKAKGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ EL  K   ++      +S     +    +       A  AL+NLGY ++     
Sbjct: 120 ASRIILELVDKVKKMAINDDISIS-----EDSFTTSNKEIDVAREALINLGYQRNSIDKV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++   + +     +II+ AL+ +
Sbjct: 175 LTTL---KDSDLSLEEIIKEALKKM 196


>gi|315174120|gb|EFU18137.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX1346]
          Length = 230

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 88/206 (42%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  +   Y++++  G+ Y I          GK+     L++   +R+D   L
Sbjct: 27  MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 85

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMK 119
           FGF S  ++Q F+ L SV G+G +  + +++ +     L+ +I  ++   + + PG+  K
Sbjct: 86  FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 145

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +++ +LKGK   L S      +        + +       A+ AL  LGY   +   
Sbjct: 146 TAQQMILDLKGKLGELESSEAAVAAMTAT--EVMTTSNQALAEALEALSALGYSDREIKR 203

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
               +    +   D    +  AL+ +
Sbjct: 204 ITKQLEALGETTTDV--YLSNALKFM 227


>gi|332203341|gb|EGJ17408.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae
           GA47368]
          Length = 197

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 96/206 (46%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYAYLKGIITKITAKYIVLETNGIGYILHV-ANPYAYSGQVNQEDQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +     +   ++          +       A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVVAGDDLPVKVA------VKASAENQELEEAMEAMLALGYKATE---- 169

Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205
           +  + K  +   D     I+ AL+ +
Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195


>gi|19704439|ref|NP_604001.1| Holliday junction DNA helicase ruvA [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|296328207|ref|ZP_06870738.1| crossover junction ATP-dependent DNA helicase RuvA [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|22001978|sp|Q8REJ7|RUVA_FUSNN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|19714701|gb|AAL95300.1| Holliday junction DNA helicase ruvA [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|296154719|gb|EFG95505.1| crossover junction ATP-dependent DNA helicase RuvA [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 194

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 100/205 (48%), Gaps = 15/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +E    DY+ ID+ GV Y +Y P+R    + ++G+   L++  H+++D  +L
Sbjct: 1   MFEYLYGTVEYKKMDYIAIDINGVGYRVYFPLREYEKI-EVGNKYKLYIYNHIKEDTYKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GFL + DR+ F LL  + G+G+ +A+ VLS  +  +++E I   +   + Q+P +  K 
Sbjct: 60  IGFLDERDRKIFELLLKINGIGSSLALAVLSNFSYNKIIEIISKNDYTTLRQVPKLGEKK 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A  I+ +LKGK  +L+   ++ +S                 + + AL  LGY + +    
Sbjct: 120 AQIIILDLKGKLKNLTYTEEETVSM------------DMLEDLVLALEGLGYNKKEIDKT 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +       +     I+  L+ +
Sbjct: 168 LEKI--DLNKFSSLEDAIKGILKNM 190


>gi|312866920|ref|ZP_07727133.1| Holliday junction DNA helicase RuvA [Streptococcus parasanguinis
           F0405]
 gi|311097703|gb|EFQ55934.1| Holliday junction DNA helicase RuvA [Streptococcus parasanguinis
           F0405]
          Length = 197

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 96/206 (46%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ Y+++      +  GK+     +++   +R+D   L
Sbjct: 1   MYEYIKGILTKITAKYIVVETAGIGYLLHV-ANPYAYSGKMNQEVHVYLHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFATEEEKQLFLNLISVSGIGPVSALAIIAADDNAGLVQAIESKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK                + +A +         A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKI------NLDLEDAPAQSKAKVAEENQALEEAMEAMLALGYKATE---- 169

Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205
           +  + K  +  +D     I+ AL+ +
Sbjct: 170 LKKIKKFFEGTSDTAENYIKSALKML 195


>gi|313206325|ref|YP_004045502.1| holliday junction DNA helicase subunit ruva [Riemerella
           anatipestifer DSM 15868]
 gi|312445641|gb|ADQ81996.1| Holliday junction DNA helicase subunit RuvA [Riemerella
           anatipestifer DSM 15868]
 gi|315023191|gb|EFT36202.1| Holliday junction DNA helicase RuvA [Riemerella anatipestifer
           RA-YM]
 gi|325336230|gb|ADZ12504.1| Holliday junction resolvasome, DNA-binding subunit [Riemerella
           anatipestifer RA-GD]
          Length = 194

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 98/205 (47%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G ++ L   +++I+  GV Y +   + T S    IG    ++ +  +R+D   L
Sbjct: 1   MIYSLRGIVQELSPTHLIIETGGVGYFVSVSVNT-SKHFSIGKESLIYTQQIIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +++ F LL SV GVG   AM +LS +   E+ ++I+  NS V+ ++ GI  K 
Sbjct: 60  YGFSELKEKEMFNLLISVNGVGPASAMIMLSSLELREIAQAILSSNSAVLQKVKGIGTKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K +   +      + ++               ++SAL  LG  +  +   
Sbjct: 120 AQRIIIDLKDKVLHFGADESDISTVID---------NKVKEESLSALEVLGIPKKMSEKL 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +LK+   I     +++  L+ I
Sbjct: 171 ANKILKQNPEIQT-EDLVKQILKNI 194


>gi|322390453|ref|ZP_08063973.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           parasanguinis ATCC 903]
 gi|321142852|gb|EFX38310.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           parasanguinis ATCC 903]
          Length = 197

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 95/206 (46%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ Y+++      +  GK+     +++   +R+D   L
Sbjct: 1   MYEYIKGILTKITAKYIVVETAGIGYLLHV-ANPYAYSGKMNQEVQVYLHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFATEEEKQLFLNLISVSGIGPVSALAIIAADDNAGLVQAIESKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK                + +A +         A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKI------NLDLEDAPAQSKAKVAEENQALEEAMEAMLALGYKATE---- 169

Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205
           +  + K  +   D     I+ AL+ +
Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195


>gi|295107077|emb|CBL04620.1| Holliday junction DNA helicase subunit RuvA [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 199

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 64/205 (31%), Positives = 99/205 (48%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG + G       IDV GV Y +     +LS L + G    +     +R D I L
Sbjct: 1   MIAFLKGRLAGKTAAAAFIDVNGVGYAVGMSQASLSKLPEAGASVEVHTYLQVRDDAIAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  ++  F  L  V GVG +VA+  LS  T   LV +I  Q+   +++IPG+  K 
Sbjct: 61  YGFMTVEEKALFERLIGVGGVGPKVALAALSVFTPQALVAAIAAQDVAAVSKIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ ELKG      S+ Q   S  ++ +A           A  AL+++G+   +A  A
Sbjct: 121 ASRIILELKG------SLDQGLASLFDEGEAPAARAAEQLRGAHEALLSMGFTAAEADLA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
               LK       DS +++ AL+ +
Sbjct: 175 ----LKGAPEGVSDSAVLQYALKRL 195


>gi|293364377|ref|ZP_06611103.1| crossover junction endoribonuclease subunit A [Streptococcus oralis
           ATCC 35037]
 gi|307702657|ref|ZP_07639609.1| holliday junction DNA helicase RuvA [Streptococcus oralis ATCC
           35037]
 gi|331267168|ref|YP_004326798.1| Holiday junction DNA helicase RuvA [Streptococcus oralis Uo5]
 gi|291317223|gb|EFE57650.1| crossover junction endoribonuclease subunit A [Streptococcus oralis
           ATCC 35037]
 gi|307623773|gb|EFO02758.1| holliday junction DNA helicase RuvA [Streptococcus oralis ATCC
           35037]
 gi|326683840|emb|CBZ01458.1| Holiday junction DNA helicase RuvA [Streptococcus oralis Uo5]
          Length = 197

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 97/206 (47%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++++  G+ YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYLKGIITKITAKYIILEANGIGYILHV-ANPYAYSGQVNQETQIYVHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +  S  +   ++          +       A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVVASDDLPSKVA------VQTSAENQELEEAMEAMLALGYKATE---- 169

Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205
           +  + K  +   D     I+ AL+ +
Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195


>gi|296875591|ref|ZP_06899662.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           parasanguinis ATCC 15912]
 gi|296433388|gb|EFH19164.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           parasanguinis ATCC 15912]
          Length = 197

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 96/206 (46%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ Y+++      +  GK+     +++   +R+D   L
Sbjct: 1   MYEYIKGILTKITAKYIVVETAGIGYLLHV-ANPYAYSGKMNQEVQVYLHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFATEEEKQLFLNLISVSGIGPVSALAIIAADDNAGLVQAIESKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK                + +A +         A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKI------NLDLEDAPAQSKAKVAEENQALEEAMEAMLALGYKATE---- 169

Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205
           +  + K  +  +D     I+ AL+ +
Sbjct: 170 LKKIKKFFEGTSDTAENYIKSALKML 195


>gi|110635507|ref|YP_675715.1| Holliday junction DNA helicase motor protein [Mesorhizobium sp.
           BNC1]
 gi|123161737|sp|Q11DH5|RUVA_MESSB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|110286491|gb|ABG64550.1| Holliday junction DNA helicase subunit RuvA [Chelativorans sp.
           BNC1]
          Length = 206

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 89/207 (42%), Positives = 133/207 (64%), Gaps = 3/207 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+KG ++ + ED+ ++DV GV Y+ +C  R+LS LG +G   TLF+ET++R+D IRL
Sbjct: 1   MIGKLKGVLDEIGEDHCVVDVGGVGYVAHCSARSLSTLGSVGTPVTLFIETYVREDMIRL 60

Query: 61  FGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +GF + L+R+WF LLQ +VQGVGA+VA+ VLS +T +EL  +I L++   +A+ PG+  K
Sbjct: 61  YGFRTVLEREWFRLLQNNVQGVGAKVALSVLSTLTPSELANAIALRDIATVARAPGVGRK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           +A RI+TELK KA + +      +         +   P    +A+SAL NLGY +D A  
Sbjct: 121 VAERIVTELKSKAPAFAGEAAGAIGLKQDLGEGVAPAP--VSDAVSALANLGYSRDIAAN 178

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV + LK     AD   +IRL L+ ++
Sbjct: 179 AVAAALKSAGEGADTGTLIRLGLKELA 205


>gi|6729740|pdb|1BVS|A Chain A, Ruva Complexed To A Holliday Junction.
 gi|6729741|pdb|1BVS|B Chain B, Ruva Complexed To A Holliday Junction.
 gi|6729742|pdb|1BVS|C Chain C, Ruva Complexed To A Holliday Junction.
 gi|6729743|pdb|1BVS|D Chain D, Ruva Complexed To A Holliday Junction.
 gi|6729744|pdb|1BVS|E Chain E, Ruva Complexed To A Holliday Junction.
 gi|6729745|pdb|1BVS|F Chain F, Ruva Complexed To A Holliday Junction.
 gi|6729746|pdb|1BVS|G Chain G, Ruva Complexed To A Holliday Junction.
 gi|6729747|pdb|1BVS|H Chain H, Ruva Complexed To A Holliday Junction
          Length = 203

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/208 (25%), Positives = 89/208 (42%), Gaps = 12/208 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +I+  G+ Y +      L+ L + G    L     +R+D + L
Sbjct: 1   MIFSVRGEVLEVALDHAVIEAAGIGYRVNATPSALATLNQ-GSQARLVTAMVVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F+ L SV GVG R+AM  L+   A  L +++   +   + ++PGI  + 
Sbjct: 60  YGFSDAENRDLFLALLSVSGVGPRLAMATLAVHDAAALRQALADSDVASLTRVPGIGRRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL  K           +              +   + + ALV LG+   QA  A
Sbjct: 120 AERIVLELADKV--------GPVGASGLTVGTAADGNAVRGSVVEALVGLGFAAKQAEEA 171

Query: 181 VVSVLKKE---KNIADDSQIIRLALRAI 205
              VL  E         S  +R AL  +
Sbjct: 172 TDQVLDGELGKDGAVATSSALRAALSLL 199


>gi|221194792|ref|ZP_03567849.1| holliday junction DNA helicase RuvA [Atopobium rimae ATCC 49626]
 gi|221185696|gb|EEE18086.1| holliday junction DNA helicase RuvA [Atopobium rimae ATCC 49626]
          Length = 211

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/209 (24%), Positives = 97/209 (46%), Gaps = 6/209 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDF-CTLFVETHMRQDQIR 59
           MI ++ G +  +    V++DV GV Y +     T + L + G+   T+     +R+D + 
Sbjct: 1   MIVQLTGTLLSVSPSLVVLDVNGVGYELGVSANTAASLPQAGEAGVTVLTRMVVREDAME 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF S  +R  F  L+++ G+GA++A+ VLS  T  +L   +  ++   + Q+ G+  K
Sbjct: 61  LYGFSSREERALFDRLRAISGIGAKLALSVLSTFTPQQLASVVASEDVTRMTQVAGLGKK 120

Query: 120 IASRIMTELKG---KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
            A R++ EL     K   L ++V             + +  S       AL+ +G+   +
Sbjct: 121 KAGRMLVELSDVFAKDAELRNLVGLSGLSDTNVSGGLSAHTSLDDEVTEALLAMGFTSQE 180

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A  A+    ++E       + +  ALR +
Sbjct: 181 AALALEG--RQEAGALSIEKAMSYALRRL 207


>gi|254303051|ref|ZP_04970409.1| Holliday junction ATP-dependent DNA helicase ruvA [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
 gi|148323243|gb|EDK88493.1| Holliday junction ATP-dependent DNA helicase ruvA [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
          Length = 194

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 100/205 (48%), Gaps = 15/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +E    DY+ ID+ GV Y +Y P+R    + ++G+    ++  H+++D  +L
Sbjct: 1   MFEYLYGTVEYKKMDYIAIDINGVGYRVYFPLREYEKI-EVGNKYKFYIYNHIKEDTYKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GFL + DR+ F LL  + G+G+ +A+ VLS  +  +++E I   +   + Q+P +  K 
Sbjct: 60  IGFLDERDRKIFELLLKINGIGSSLALAVLSNFSYNKIIEIISKNDYTTLRQVPKLGEKK 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A  I+ +LKGK  +L+   ++ +S                 + + AL  LGY + +    
Sbjct: 120 AQIIILDLKGKLKNLTYTEEETVSM------------DMLEDLVLALEGLGYNKKEIDKT 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +       +   + I+  L+ +
Sbjct: 168 LEKI--DLSKFSSLEEAIKGILKNM 190


>gi|240173173|ref|ZP_04751831.1| Holliday junction DNA helicase RuvA [Mycobacterium kansasii ATCC
           12478]
          Length = 195

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 53/194 (27%), Positives = 85/194 (43%), Gaps = 13/194 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+V+I+  GV Y +     TL+ L + G    L     +R+D + L
Sbjct: 1   MIAGVRGEVLEVALDHVVIEAAGVGYRVNATPSTLATL-RQGTEARLVTAMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F+ L SV GVG R+AM  L+   A  L  ++   +   + ++PGI  + 
Sbjct: 60  YGFGDRETRDLFLTLLSVSGVGPRLAMATLAVHDAAALRRALADGDVAALTRVPGIGKRG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K     +             A   +  +     + ALV LG+   QA  A
Sbjct: 120 AERMVLELRDKVGPAGA------------AAPALNGNAVRTPVVEALVGLGFAAKQAEEA 167

Query: 181 VVSVLKKEKNIADD 194
              VL  E      
Sbjct: 168 TDKVLAAEPGTTTS 181


>gi|126656681|ref|ZP_01727895.1| Holliday junction DNA helicase motor protein [Cyanothece sp.
           CCY0110]
 gi|126621901|gb|EAZ92609.1| Holliday junction DNA helicase motor protein [Cyanothece sp.
           CCY0110]
          Length = 212

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/214 (22%), Positives = 98/214 (45%), Gaps = 13/214 (6%)

Query: 1   MIGKIKG---NIEGLYEDYV--LIDVQGVCYIIYCPIRTLSCLGKIG-DFCTLFVETHMR 54
           MI  +KG    +     + +  +++V  + Y I  P +    + +   D   +F    ++
Sbjct: 1   MISYLKGSPIEVIKNTNNRIILVLEVNQIGYEIQIPSKLARDISQEKLDIIQVFTHLQIK 60

Query: 55  QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114
            DQ  L+GF +  +R+ F  L SV G+GA+ A+ ++  +   ELV++I+  N ++++Q P
Sbjct: 61  DDQQILYGFFTTAERELFRQLISVSGIGAQSAIALIDTLGLEELVQAIVTGNIRILSQTP 120

Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           GI  K A RI  EL+ K      +V   ++  +              +    L+ LGY  
Sbjct: 121 GIGKKTAERIALELRTKLSQWRKLVGVTVTSSSAM-----PSLEILEDIEMTLLALGYTN 175

Query: 175 DQATTAVVSVLKKE--KNIADDSQIIRLALRAIS 206
           ++   A+ ++ +        +  + I+ A+  +S
Sbjct: 176 EEINKAISTLSQDNLMLKNTNTEEWIKEAIAWLS 209


>gi|319947801|ref|ZP_08021995.1| Holliday junction DNA helicase RuvA [Dietzia cinnamea P4]
 gi|319438525|gb|EFV93451.1| Holliday junction DNA helicase RuvA [Dietzia cinnamea P4]
          Length = 199

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 98/205 (47%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +  +  D  +++  GV  +++     L+ L + G    L  E  +R+D + L
Sbjct: 1   MIASIRGTVAEIGLDRCVVETGGVGVLVHATPAALAGL-RRGAEGMLHTELVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S   RQ F+ +Q+V GVG R+A+ +++ +    L+ ++   + K +  +PG+  + 
Sbjct: 60  YGFDSVDARQLFLTVQTVSGVGPRLALAIVATLEPEALIRALGTGDVKALTLVPGVGKRT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K   +           N                  AL  LG+   +A   
Sbjct: 120 AERMVLELKDKVGPVPDGDAASSVVGNGRAPAAT-------EVADALEGLGFSAAEAEKT 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             +VL  + ++ D +Q +RLAL+++
Sbjct: 173 ATAVLDSQPDL-DPAQALRLALKSL 196


>gi|294811584|ref|ZP_06770227.1| Holliday junction DNA helicase RuvA [Streptomyces clavuligerus ATCC
           27064]
 gi|326440227|ref|ZP_08214961.1| Holliday junction DNA helicase RuvA [Streptomyces clavuligerus ATCC
           27064]
 gi|294324183|gb|EFG05826.1| Holliday junction DNA helicase RuvA [Streptomyces clavuligerus ATCC
           27064]
          Length = 204

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 53/209 (25%), Positives = 99/209 (47%), Gaps = 11/209 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L     ++ V GV   ++C   TL+ L ++G+   L     +R+D + L
Sbjct: 1   MIAFVSGQVAALAPTTAVVAVGGVGMSVHCTPATLAGL-RVGEEARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  +L+  +   L  ++   + + +  +PGI  K 
Sbjct: 60  YGFADDDERQVFELLQTASGVGPRLAQAMLAVHSPDALRTAVAGGDERALTAVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ ELK +         +        +    +  S++    +AL+ LGY   +A  A
Sbjct: 120 AQKLLLELKDRL-------GEPTGVPGARRGAAAAPASWSDQLHAALIGLGYAGREADEA 172

Query: 181 VVSVLKKEKNIADDSQ---IIRLALRAIS 206
           V +V  +        Q   +++ AL+ ++
Sbjct: 173 VAAVTPQAAAAGAAPQVGVLLKAALQTLN 201


>gi|260583653|ref|ZP_05851401.1| holliday junction DNA helicase RuvA [Granulicatella elegans ATCC
           700633]
 gi|260158279|gb|EEW93347.1| holliday junction DNA helicase RuvA [Granulicatella elegans ATCC
           700633]
          Length = 198

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 90/205 (43%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  +   Y++++  G+ Y I           K+ +   + ++  +R+D I L
Sbjct: 1   MYEYLKGELVAIQPTYIVVENHGIGYQI-MFANPYRIQLKLNEVIRVELQQIVREDSITL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLSD +++ F  L SV G+G + A+ +L+       ++++   N   + + PG+  K 
Sbjct: 60  YGFLSDEEKELFQKLISVSGIGPKSAVSILANDDVNGFIQAVESGNITYLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK  ++       +  V        +       A  AL+ LGY   + T  
Sbjct: 120 AQQIVLDLKGKFTNIV------VEEVATPVVETATGIKQLEEAREALLGLGYSAKEITKV 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +           + + +A + +
Sbjct: 174 WKELEAAAPQ--TTQEALSIAFKLL 196


>gi|309807405|ref|ZP_07701368.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LactinV
           01V1-a]
 gi|312872854|ref|ZP_07732916.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LEAF
           2062A-h1]
 gi|312873710|ref|ZP_07733755.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LEAF
           2052A-d]
 gi|325913741|ref|ZP_08176102.1| Holliday junction DNA helicase RuvA [Lactobacillus iners UPII 60-B]
 gi|308169327|gb|EFO71382.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LactinV
           01V1-a]
 gi|311090708|gb|EFQ49107.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LEAF
           2052A-d]
 gi|311091588|gb|EFQ49970.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LEAF
           2062A-h1]
 gi|325476941|gb|EGC80092.1| Holliday junction DNA helicase RuvA [Lactobacillus iners UPII 60-B]
          Length = 194

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 99/205 (48%), Gaps = 14/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G +  +   Y+++DV GV Y +Y P      +        +FVE  +R++ I L
Sbjct: 1   MFEYLQGKVTIINPAYIVLDVVGVGYKLYTP-NPYQFI--ENKQYCIFVEQVVRENAITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ D+Q F+ L SV G+G + A+ +++   +  L+ +I     K + + PG+  K+
Sbjct: 58  YGFATNEDKQLFLKLISVSGIGPKSALAIMAAENSQSLMAAIEQGEIKYLTKFPGVGKKV 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK          D+S   + +  +        +AI AL  LGY   +    
Sbjct: 118 ASQIILDLKGKL---------DVSDQPQLELILDQDNPALKDAILALSALGYSNKEVEKI 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              + K     AD    I+ AL+ +
Sbjct: 169 KPKLEKLPNQSADL--YIKEALKLL 191


>gi|256371996|ref|YP_003109820.1| Holliday junction DNA helicase RuvA [Acidimicrobium ferrooxidans
           DSM 10331]
 gi|256008580|gb|ACU54147.1| Holliday junction DNA helicase RuvA [Acidimicrobium ferrooxidans
           DSM 10331]
          Length = 189

 Score =  132 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 90/206 (43%), Gaps = 18/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +       V+IDV GV Y ++      + L +  D C L++ T +R D I L
Sbjct: 1   MIGWLHGRVASAGRSPVVIDVAGVGYEVHVTA-PWATLLRRDDECELWIRTIVRADAIAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R+ F  L  V GVG ++A+G+L  I   EL  +I  ++   +  I G+  K 
Sbjct: 60  YGFASQAEREAFDALIGVSGVGPQLALGILGGIEGDELWTAIATEDLGRLTAIAGVGPKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL   A  L+ V    MS                    +AL  LG+   +    
Sbjct: 120 AKRVVLELAPTAKRLAPVTGVPMS-------------QEVSALRAALGELGFRPGEIDAV 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V           D    +R AL+ ++
Sbjct: 167 VRRC----PGDLDFEAQVRWALKELA 188


>gi|257784697|ref|YP_003179914.1| Holliday junction DNA helicase RuvA [Atopobium parvulum DSM 20469]
 gi|257473204|gb|ACV51323.1| Holliday junction DNA helicase RuvA [Atopobium parvulum DSM 20469]
          Length = 210

 Score =  132 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 53/208 (25%), Positives = 94/208 (45%), Gaps = 5/208 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDF-CTLFVETHMRQDQIR 59
           MI ++ G +  +     ++DV GV Y +     T + L + G+   T+     +R+D + 
Sbjct: 1   MIVQLTGTLVSVTPSVAVLDVNGVGYELGISASTAAALPQAGEAGVTVLTRMVVREDSME 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF S  +R  F  L+++ GVG ++A+ VLS  T  +L   +   +   +  + G+  K
Sbjct: 61  LFGFASREERALFDRLRAISGVGPKLALSVLSTFTPQQLAVIVATNDGNRLKSVSGLGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQ--QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            A R++ EL       + + Q     S  +       ++ S    AI AL+ +G+   +A
Sbjct: 121 KAERLIIELSDVFAKDTELKQLVGLTSPTDFASIPKPTVTSVESEAIEALLGMGFTSQEA 180

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
           T A+     +E         I  ALR +
Sbjct: 181 TLALEG--YEEVGAITIEAAIGYALRRL 206


>gi|259501311|ref|ZP_05744213.1| crossover junction endoribonuclease subunit A [Lactobacillus iners
           DSM 13335]
 gi|302190965|ref|ZP_07267219.1| Holliday junction DNA helicase RuvA [Lactobacillus iners AB-1]
 gi|309803578|ref|ZP_07697670.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LactinV
           11V1-d]
 gi|309806006|ref|ZP_07700032.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LactinV
           03V1-b]
 gi|309809677|ref|ZP_07703533.1| Holliday junction DNA helicase RuvA [Lactobacillus iners SPIN
           2503V10-D]
 gi|315653062|ref|ZP_07905990.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           iners ATCC 55195]
 gi|325911914|ref|ZP_08174317.1| Holliday junction DNA helicase RuvA [Lactobacillus iners UPII
           143-D]
 gi|329919608|ref|ZP_08276597.1| Holliday junction DNA helicase RuvA [Lactobacillus iners SPIN
           1401G]
 gi|259167281|gb|EEW51776.1| crossover junction endoribonuclease subunit A [Lactobacillus iners
           DSM 13335]
 gi|308164326|gb|EFO66581.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LactinV
           11V1-d]
 gi|308167609|gb|EFO69762.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LactinV
           03V1-b]
 gi|308170037|gb|EFO72074.1| Holliday junction DNA helicase RuvA [Lactobacillus iners SPIN
           2503V10-D]
 gi|315489597|gb|EFU79231.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           iners ATCC 55195]
 gi|325476216|gb|EGC79379.1| Holliday junction DNA helicase RuvA [Lactobacillus iners UPII
           143-D]
 gi|328937413|gb|EGG33835.1| Holliday junction DNA helicase RuvA [Lactobacillus iners SPIN
           1401G]
          Length = 194

 Score =  132 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 99/205 (48%), Gaps = 14/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G +  +   Y+++DV GV Y +Y P      +        +FVE  +R++ I L
Sbjct: 1   MFEYLQGKVTIVNPAYIVLDVVGVGYKLYTP-NPYQFI--ENKQYCIFVEQVVRENAITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ D+Q F+ L SV G+G + A+ +++   +  L+ +I     K + + PG+  K+
Sbjct: 58  YGFATNEDKQLFLKLISVSGIGPKSALAIMAAENSQSLMAAIEQGEIKYLTKFPGVGKKV 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK          D+S   + +  +        +AI AL  LGY   +    
Sbjct: 118 ASQIILDLKGKL---------DVSDQPQLELILDQDNPALKDAILALSALGYSNKEVEKI 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              + K     AD    I+ AL+ +
Sbjct: 169 KPKLEKLPNQSADL--YIKEALKLL 191


>gi|29833376|ref|NP_828010.1| Holliday junction DNA helicase RuvA [Streptomyces avermitilis
           MA-4680]
 gi|44888446|sp|Q820F4|RUVA_STRAW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|29610499|dbj|BAC74545.1| putative Holliday junction DNA helicase subunit B [Streptomyces
           avermitilis MA-4680]
          Length = 203

 Score =  132 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 54/209 (25%), Positives = 94/209 (44%), Gaps = 12/209 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L  D  +++V G+   + C   TLS L ++G    L     +R+D + L
Sbjct: 1   MIAFVSGPVAALAPDSAVVEVGGIGIAVQCTPNTLSGL-RMGREAKLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+ D +RQ F LLQ+  GVG R+A  +L+  T   L  ++   + K +  +PGI  K 
Sbjct: 60  YGFVDDDERQVFELLQTASGVGPRLAQAMLAVHTPDALRRAVSTGDEKALVAVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD---QA 177
           A +++ ELK +           +               +     +AL+ LGY      +A
Sbjct: 120 AQKLLLELKDRLGEPLGTGGPAIG--------RAVTTGWREQLHAALIGLGYATREADEA 171

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
             AV    +         Q+++ AL+ ++
Sbjct: 172 VAAVAPQAEAAGGTPQVGQLLKAALQTLN 200


>gi|268318974|ref|YP_003292630.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus
           johnsonii FI9785]
 gi|262397349|emb|CAX66363.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus
           johnsonii FI9785]
          Length = 192

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 93/205 (45%), Gaps = 16/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  +   Y+++DV GV Y I CP               ++VE  +R   I L
Sbjct: 1   MFEYLKGIVTKIDPAYIVLDVNGVGYKILCPTPYSY---DENQPAAIYVEQVVRDTGITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS  D++ F+ L SV G+G + A+ +++      L  +I     K + + PG+  K 
Sbjct: 58  YGFLSLEDKELFLKLLSVSGIGPKSAVAIMAAEDTDSLASAIQNGEVKYLTRFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK                K+      +     +A+ ALV LGY Q +    
Sbjct: 118 ASQIVLDLKGKLGDY-----------VKKSTAAADLTPSLQDALLALVALGYTQKEVDRI 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              + K  +N AD    ++ AL  +
Sbjct: 167 TPKLAKLPENTADG--YVKEALALL 189


>gi|313884201|ref|ZP_07817967.1| Holliday junction DNA helicase RuvA [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620648|gb|EFR32071.1| Holliday junction DNA helicase RuvA [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 201

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 95/205 (46%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I+G +  ++  Y+++   G+ Y IY      +    + +   +++E  +R+D + L
Sbjct: 1   MYEYIQGILSQIHPTYLVVTASGLAYKIY-SPNAYAWNRHLNEEVQVYLELVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +++ F LL  V  +G + A+ +L+    T LV++I  QN   + + PG+  K 
Sbjct: 60  YGFKDMQEKELFNLLNRVSNIGPKSALSILALNDHTGLVQAIESQNVTYLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK       V  D + +   Q    S  +       AL  LGY Q +   A
Sbjct: 120 AQQMILDLQGKLGDF---VANDGAELAPSQQASSSNQAQFDEVAEALAGLGYSQREI-KA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +   +   ++ A   + +  A + +
Sbjct: 176 IAKPMA-LQSFASTQEALSFAFKLL 199


>gi|307153472|ref|YP_003888856.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 7822]
 gi|306983700|gb|ADN15581.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 7822]
          Length = 209

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 52/214 (24%), Positives = 94/214 (43%), Gaps = 14/214 (6%)

Query: 1   MIGKIKGNIEGLYED-----YVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMR 54
           MI  +KG    +++       ++++V  + Y I  P R    L         +F    +R
Sbjct: 1   MINYLKGKTIQIHKTATNRLQLILEVNQIGYEIQIPSRLARKLTLDDDQTIQIFTHLQIR 60

Query: 55  QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114
           +DQ  L+GF +  +R  F  L SV GVGA+ A+ ++  +   ELV +I+  N + +A+ P
Sbjct: 61  EDQQILYGFATSEERDLFRQLISVSGVGAQSAIALIDTLGLEELVRAIMSNNGRTLAKSP 120

Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           GI  K A RI+ ELK K         +                         L+ LGY  
Sbjct: 121 GIGPKTAERILLELKTKVSQWQPQGLKTSVSAG------LPRKEILEEVEMTLLALGYSD 174

Query: 175 DQATTAVVSVLKKEK--NIADDSQIIRLALRAIS 206
           ++ T A+ ++ +  +    ++  + ++ A+  +S
Sbjct: 175 EEITGAISAISQDNQLLKNSNIEEWLKSAITLLS 208


>gi|312875156|ref|ZP_07735169.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LEAF
           2053A-b]
 gi|311089263|gb|EFQ47694.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LEAF
           2053A-b]
          Length = 194

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 99/205 (48%), Gaps = 14/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G +  +   Y+++DV GV Y +Y P      +        +FVE  +R++ I L
Sbjct: 1   MFEYLQGKVTIVNPAYIVLDVVGVGYKLYTP-NPYQFI--ENKQYCIFVEQVVRENAITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ D+Q F+ L SV G+G + A+ +++   +  L+ +I     K + + PG+  K+
Sbjct: 58  YGFATNEDKQLFLKLISVSGIGPKSALAIMAAENSQSLMAAIEQGEIKYLTKFPGVGKKV 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK          D+S   + +  +        +AI AL  LGY   +    
Sbjct: 118 ASQIILDLKGKL---------DVSDQPQLELILDQDNPALKDAILALSALGYSNKEVEKI 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              + K     AD    I+ AL+ +
Sbjct: 169 KPKLEKIPNQSADL--YIKEALKLL 191


>gi|298491329|ref|YP_003721506.1| Holliday junction DNA helicase RuvA ['Nostoc azollae' 0708]
 gi|298233247|gb|ADI64383.1| Holliday junction DNA helicase RuvA ['Nostoc azollae' 0708]
          Length = 212

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 59/213 (27%), Positives = 94/213 (44%), Gaps = 14/213 (6%)

Query: 1   MIGKIKGNIE---GLYEDYVLI--DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55
           MI  +KG +     +  + V++  +V G+ Y +  P R  + L   GD   +F    +R+
Sbjct: 1   MISYLKGIVACIQAISSNRVILTLEVNGLGYDLQVPQRLANQLTTTGDVVQIFTHYQVRE 60

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           +   L+GF S  +R  F  L SV G+GA +A+ +L  +   ELV++II  N++++ Q PG
Sbjct: 61  EVPLLYGFSSPAERDLFRHLLSVTGIGAALAITLLDTLELPELVQAIIAANTQILIQAPG 120

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           +  K A RI  ELK K I                 A     P         L  LGY   
Sbjct: 121 VGKKTAERICLELKSKLIEWR-------KSAAFFVATGGPAPGILEEVQMTLFALGYTAH 173

Query: 176 QATTAVVSVLKK--EKNIADDSQIIRLALRAIS 206
           + + A+  V +       A     I+ A+  +S
Sbjct: 174 EVSHALHVVSENIGLPKDAYVEDWIKQAIGHLS 206


>gi|325846722|ref|ZP_08169637.1| Holliday junction DNA helicase RuvA [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481480|gb|EGC84521.1| Holliday junction DNA helicase RuvA [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 197

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 100/205 (48%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G I+ + E+  +I+   + Y+I     T+  L +I +   +F + ++R+D I L
Sbjct: 1   MISYIIGEIKYIGEENFIIENNNMGYLINSSFNTIKTL-EINNEFKIFTKMNVREDDISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  + + F LL SV  +G + A+ VLS +   ++  +I+  +   + +  GI  K 
Sbjct: 60  FGFSSKDELEVFELLTSVSTIGPKNAIAVLSTLNVDKIKLAIVNNDIDTLTKAKGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ EL  K   ++      +S     +    +       A  AL+NLGY ++     
Sbjct: 120 ASRIILELVDKVKKMAINDDISIS-----EDSFTTSNKEIDVAREALINLGYQRNSIDKV 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++   + +     +II+ AL+ +
Sbjct: 175 LTTL---KDSDLSLEEIIKEALKKM 196


>gi|227875448|ref|ZP_03993589.1| Holliday junction DNA helicase motor protein [Mobiluncus mulieris
           ATCC 35243]
 gi|269977300|ref|ZP_06184273.1| holliday junction DNA helicase RuvA [Mobiluncus mulieris 28-1]
 gi|306818760|ref|ZP_07452482.1| crossover junction ATP-dependent DNA helicase RuvA [Mobiluncus
           mulieris ATCC 35239]
 gi|307701010|ref|ZP_07638035.1| Holliday junction DNA helicase RuvA [Mobiluncus mulieris FB024-16]
 gi|227844002|gb|EEJ54170.1| Holliday junction DNA helicase motor protein [Mobiluncus mulieris
           ATCC 35243]
 gi|269934603|gb|EEZ91164.1| holliday junction DNA helicase RuvA [Mobiluncus mulieris 28-1]
 gi|304648446|gb|EFM45749.1| crossover junction ATP-dependent DNA helicase RuvA [Mobiluncus
           mulieris ATCC 35239]
 gi|307614005|gb|EFN93249.1| Holliday junction DNA helicase RuvA [Mobiluncus mulieris FB024-16]
          Length = 193

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 93/205 (45%), Gaps = 16/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +     D   I   G+    +    TLS L + G    ++    +R+D + L
Sbjct: 1   MIALLKGQVVDKRIDRATILCGGLGLEFFATPNTLSTLNQ-GQDAEIYTCLVVREDALTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R+ F +L  V+G+G ++A+  L+ ++ ++L  ++  ++   + +IPG+  K 
Sbjct: 60  YGFDDFQQRETFQILIQVKGIGPKLALATLAVLSPSDLANAVANRDLTTLQRIPGVGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+  E+  K   + + V    +                   + AL NLG+ Q QAT A
Sbjct: 120 AERMSLEIGDKLGIVPTSVTTAATGGGFNATT----------VVEALTNLGWNQAQATEA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++        D +  +R AL+ +
Sbjct: 170 VNAI-----EANDAATALREALQYL 189


>gi|319946048|ref|ZP_08020297.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           australis ATCC 700641]
 gi|319747856|gb|EFW00101.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           australis ATCC 700641]
          Length = 197

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 96/206 (46%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ Y+++      +  GK+     +++   +R+D   L
Sbjct: 1   MYEYIKGILTKITAKYIVVETAGIGYLLHV-ANPYAYSGKMNQKVQVYLHQVVREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFATEEEKQLFLNLISVSGIGPVSALAIIAADDNAGLVQAIESKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK                + +A +         A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKI------NLDLEDAPAQSKAKVAEENQALEEAMEAMLALGYKATE---- 169

Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205
           +  + K  +  +D     I+ AL+ +
Sbjct: 170 LKKIKKFFEGTSDTAENYIKSALKML 195


>gi|227488786|ref|ZP_03919102.1| Holliday junction DNA helicase motor protein [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091208|gb|EEI26520.1| Holliday junction DNA helicase motor protein [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 200

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 87/205 (42%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +        +I+  GV Y       TL+ L  +G+   +     + +  + L
Sbjct: 1   MIASLHGEVVAKSLTGGVIECGGVGYEFLATAATLAELP-LGEDGRVLTTMVIGEKVVTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +R  F  LQ VQG+G ++A+  L+  + +E+  ++   + K +  IPG+  ++
Sbjct: 60  YGFAHDSERTMFSQLQGVQGLGPKLALACLNTYSPSEIAVAVANDDKKTLQAIPGVGARM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+++   L GK            S          +        ++ALV LG+ +D A  A
Sbjct: 120 AAKMTAVLDGKLDEFIDSTATTSSAAEPVTGGSET-------VVAALVQLGFDEDSANHA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
                +      D    +R AL+ +
Sbjct: 173 AAWAEESNPGG-DTGTNLRHALQYL 196


>gi|162447235|ref|YP_001620367.1| holliday junction DNA helicase RuvA [Acholeplasma laidlawii PG-8A]
 gi|189045740|sp|A9NF61|RUVA_ACHLI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|161985342|gb|ABX80991.1| holliday junction DNA helicase RuvA [Acholeplasma laidlawii PG-8A]
          Length = 186

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 100/205 (48%), Gaps = 21/205 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   +++++  GV Y++  P+       KIG+  T+    H+R+D  +L
Sbjct: 1   MYRYIKGIVTQINPQHIVVENNGVGYLVLSPVPYQY---KIGEETTVVTYLHVREDIFQL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  +     F+ L SV G+G + AM +++     +++ +I   ++K + + PGI MK 
Sbjct: 58  YGFKDEETLNLFLKLISVSGIGPKSAMSIVAFDDTNKIIAAIETSDAKYLTKFPGIGMKS 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK ++              ++  +  +   + +  +AL  LGY + +   +
Sbjct: 118 AQQIILDLKGKLVN--------------DELDMQLLSDNSKDVAAALEALGYNKKEIAKS 163

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  V        D ++ ++ AL  +
Sbjct: 164 LKHV----NFDQDLNKALKEALAIL 184


>gi|320547648|ref|ZP_08041933.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           equinus ATCC 9812]
 gi|320447723|gb|EFW88481.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           equinus ATCC 9812]
          Length = 197

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 85/205 (41%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +   Y++++  G+ YII       S    +     +++   +R+D   L
Sbjct: 1   MYDYIKGKLTKITAKYIVVEAGGLGYIINV-ANPYSFSDLMNQDVQIYLHQVVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ ++  F+ L SV G+G   A+ +++      LV +I   + + + + P I  K 
Sbjct: 60  FGFHTEDEKAVFLNLISVSGIGPTTALAIIAVDDNEGLVTAIDNSDIRYLMKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L GK   +S                          A+ AL+ LGY   +    
Sbjct: 120 AQQVVLDLAGKFADVSMENGLASQA-------KAVANEQLEEAMEALLALGYKAAELKK- 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +      E       Q I+ +L+ +
Sbjct: 172 IRKFF--EGTNETAEQYIKSSLKML 194


>gi|312870745|ref|ZP_07730852.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LEAF
           3008A-a]
 gi|311093757|gb|EFQ52094.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LEAF
           3008A-a]
          Length = 194

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 100/205 (48%), Gaps = 14/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G +  +   Y+++DV GV Y +Y P      +        +FVE  +R++ I L
Sbjct: 1   MFEYLQGKVTIVNPAYIVLDVVGVGYKLYTP-NPYQFI--ENKQYCIFVEQVVRENAITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ D+Q F+ L SV G+G + A+ +++   +  L+ +I     K + + PG+  K+
Sbjct: 58  YGFATNEDKQLFLKLISVSGIGPKSALAIMAAENSQSLMAAIEQGEIKYLTKFPGVGKKV 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK          D+S   + +  +        +AI AL  LGY   +    
Sbjct: 118 ASQIILDLKGKL---------DVSDQPQLELILDQDNPALKDAILALSALGYSNKEVEK- 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +   L+K  N       I+ AL+ +
Sbjct: 168 IKPKLEKLPN-QSADHYIKEALKLL 191


>gi|222151527|ref|YP_002560683.1| holliday junction DNA helicase RuvA [Macrococcus caseolyticus
           JCSC5402]
 gi|254766967|sp|B9E719|RUVA_MACCJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|222120652|dbj|BAH17987.1| holliday junction DNA helicase RuvA [Macrococcus caseolyticus
           JCSC5402]
          Length = 193

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 91/203 (44%), Gaps = 14/203 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   +++I+V G+ Y    P        ++    TL  +  +R+D   L
Sbjct: 1   MYAYLKGKIMTILPTHLVIEVSGIGYECLTP-NPYRFNHQLDQMITLHTQLVVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + ++  F  L  V G+G + A+ +L+  T  E++++I  ++   + + PGI  K 
Sbjct: 60  YGFKDEEEKAMFNALNKVTGIGPKSALAILATSTPQEIIKAIESESESYLIKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK            +  ++ +       +    A+ A   LGY + + T  
Sbjct: 120 ARQIILDLKGKL-----------TITDESELFKEVNDTLLNEALLAFEALGYSKREITKI 168

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
              + KK    +   + ++  L+
Sbjct: 169 EKELKKK--QFSTVDEYVKQGLQ 189


>gi|330936721|gb|EGH40906.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 119

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 68/119 (57%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G++      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGSLAEKQPPHLVLDVNGVGYEVEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  K
Sbjct: 61  YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKK 119


>gi|327394173|dbj|BAK11595.1| Holliday junction DNA helicase RuvA [Pantoea ananatis AJ13355]
          Length = 175

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 83/176 (47%), Gaps = 4/176 (2%)

Query: 30  CPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGV 89
            P+     L  +     +F +  +R+D   LFGF S  +R  F  L  V GVG ++A+ +
Sbjct: 1   MPMTCFYELPDLNHEAVIFTQFVVREDAQLLFGFNSKQERALFRELIKVNGVGPKLALAI 60

Query: 90  LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVV-QQDMSCVNK 148
           LS ++A + V ++  +    + ++PG+  K A R++ E+K +   +   +   D +    
Sbjct: 61  LSGMSAQQFVTAVEKEEIAALVKLPGVGKKTAERLVVEMKDRFKGMHGDLFGGDSAFTLT 120

Query: 149 EQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204
                         A++ALV+LGY   +A+  +  V +     AD   +IR ALRA
Sbjct: 121 TPGPEPETNDAESEAVAALVSLGYKPQEASRMISKVGR---PDADCETLIREALRA 173


>gi|329769669|ref|ZP_08261073.1| Holliday junction DNA helicase RuvA [Gemella sanguinis M325]
 gi|328838424|gb|EGF88033.1| Holliday junction DNA helicase RuvA [Gemella sanguinis M325]
          Length = 192

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 92/205 (44%), Gaps = 16/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG I  +    +++D  G+ Y I         L    +   +F+   +R+D   L
Sbjct: 1   MYAYIKGKISEINPTNIVVDNNGIGYEIVVANPYEYQLE---EEKQIFISQQVREDSNTL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +   ++ F+LL  V+GVG + A+ +L+  T+ E++ +I  Q++  + + PGI  K 
Sbjct: 58  YGFSTKEQKKVFLLLLKVKGVGPKSALAILAGATSEEIISAIEKQDAVYLTKFPGIGKKS 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +L+GK                       +   +  +A+ AL  LGY + + T  
Sbjct: 118 AQQIILDLQGKVD-----------FAATASTPNNNANQYLKDALLALEALGYSKKELTKI 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +   + +  D    ++  L+ +
Sbjct: 167 EKKLSAFDYDGVDS--YVKQGLKLL 189


>gi|67922170|ref|ZP_00515685.1| DNA recombination protein, RuvA [Crocosphaera watsonii WH 8501]
 gi|67856070|gb|EAM51314.1| DNA recombination protein, RuvA [Crocosphaera watsonii WH 8501]
          Length = 210

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 46/214 (21%), Positives = 97/214 (45%), Gaps = 13/214 (6%)

Query: 1   MIGKIKGNIEGLYEDY-----VLIDVQGVCYIIYCPIRTLSCLGKIG-DFCTLFVETHMR 54
           MI  +KG    + ++      ++++V  + Y +  P +    + +   +   +F    ++
Sbjct: 1   MISYLKGIPIEVIKNTNNRIILVLEVNKIGYELQIPSKLARDISQYDLENIQVFTYLQIK 60

Query: 55  QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114
           +DQ  L+GF +  +R+ F  L SV G+GA+ A+ ++  +   ELV++I+  N + ++Q P
Sbjct: 61  EDQQILYGFSTTAERELFRQLISVSGIGAQSAIALIDTLGLEELVQAIVTGNIRTLSQTP 120

Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           G+  K A RI  EL+ K      +V   ++  +              +    L+ LGY  
Sbjct: 121 GVGKKTAERIALELRTKLSQWRKLVGGTVASSSAM-----PSLDILEDIEMTLLALGYTN 175

Query: 175 DQATTAVVSVLKKE--KNIADDSQIIRLALRAIS 206
           ++   AV ++ +           + I+  +  +S
Sbjct: 176 EEINKAVSTLSQDNLMLKNTSTEEWIKEVIAWLS 209


>gi|317495143|ref|ZP_07953513.1| Holliday junction DNA helicase RuvA [Gemella moribillum M424]
 gi|316914565|gb|EFV36041.1| Holliday junction DNA helicase RuvA [Gemella moribillum M424]
          Length = 192

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 94/205 (45%), Gaps = 16/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG I  +    ++ID  G+ Y I         L    +   +++   +R+D   L
Sbjct: 1   MYAYIKGKISEINPTNIVIDNNGIGYEITVANPYEYQL---NEEKQIYISQQVREDSNTL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+   ++ F+LL  V+GVG + A+ +L+  T+ E++ +I  Q+   + + PGI  K 
Sbjct: 58  YGFLTKEQKKVFLLLLKVKGVGPKSALAILAGATSEEIISAIEKQDVNYLTKFPGIGKKS 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +L+GK    ++  + +                +  +A+ AL  LGY   +    
Sbjct: 118 AQQIILDLQGKIDFNTAANKTESLA-----------NLYIKDALLALEALGYSTKELAKI 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              + K E +  D    ++  L+ +
Sbjct: 167 ESRLAKFEFSAVD--DYVKQGLKLL 189


>gi|227484942|ref|ZP_03915258.1| possible crossover junction endoribonuclease subunit A
           [Anaerococcus lactolyticus ATCC 51172]
 gi|227237097|gb|EEI87112.1| possible crossover junction endoribonuclease subunit A
           [Anaerococcus lactolyticus ATCC 51172]
          Length = 196

 Score =  131 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 103/205 (50%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG+++ + E+  +I+   + Y I   + +LS + +I +   ++    +R+D I L
Sbjct: 1   MISYIKGDVKAINEEGFIIETNNIGYYINSTLTSLSNI-QINNEYKIYTSMQVREDDISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  + + F+LL SV  +G ++A+G+LS I+A E+  +I+  +   +    GI  K 
Sbjct: 60  YGFYSKDELEMFLLLISVSSIGPKIAIGMLSSISADEIKLAIVNNDIDKLTDAKGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ EL  K   ++      +  ++K +       +    A  AL NLGY ++     
Sbjct: 120 ASRIILELVDKVKKMA------IPDLDKVEKVNPVKNNDIEVAREALKNLGYMENDVARV 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +   +        +I+ +L+ +
Sbjct: 174 LNELKDTD---LSLEGLIKESLKRL 195


>gi|194335574|ref|YP_002017368.1| Holliday junction DNA helicase RuvA [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|229560112|sp|B4SCR7|RUVA_PELPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|194308051|gb|ACF42751.1| Holliday junction DNA helicase RuvA [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 200

 Score =  131 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 54/202 (26%), Positives = 101/202 (50%), Gaps = 8/202 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G +  +  + V+++V G+ Y       T   L + G    LF    +R+D ++L
Sbjct: 1   MFAYFRGKLTSVLPEEVVVEVSGIAYQFLISAATHRQLPEQGSEVFLFSHLVVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + +RQ F LL    GVG ++A+ +LS ++  ++ ++I+    + +  I G+  K 
Sbjct: 61  YGFSGEEERQLFRLLLLTTGVGPKLALALLSGLSVQDIHDAILTNTPERLYGITGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ EL+ K + LS V                S      +A++ALV LG+ +     A
Sbjct: 121 AARIILELRDKVLKLSPVSALASPA-------RLSSTLLRDDAVNALVTLGFSRIIVQKA 173

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           VV++L++   +    ++I+ AL
Sbjct: 174 VVAILEQNPGL-TVEEVIKAAL 194


>gi|299535650|ref|ZP_07048971.1| Holliday junction ATP-dependent DNA helicase ruvA [Lysinibacillus
           fusiformis ZC1]
 gi|298728850|gb|EFI69404.1| Holliday junction ATP-dependent DNA helicase ruvA [Lysinibacillus
           fusiformis ZC1]
          Length = 206

 Score =  131 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 89/196 (45%), Gaps = 3/196 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +  ++++++ QG+ + +  P         +     ++V  H+R+D   L
Sbjct: 1   MYDYLKGQITRITPEFIVLEQQGIGWQLNTPNPFAFRTSALEQQ--IYVHLHVREDAQVL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +   R+ F  L  V G+G + A+ +L+     +++ +I  ++   + + PG+  K 
Sbjct: 59  YGFPNLDQRELFRKLILVSGIGPKGALAILATGNPQQVISAIEREDEAFLVKFPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK  SL   ++   +        + +       A+ AL+ LGY + +    
Sbjct: 119 ARQMILDLKGKLGSLLDTLELPSAEDELPLFGVNAYKHELEEALLALMALGYSEKELEK- 177

Query: 181 VVSVLKKEKNIADDSQ 196
           +   L+    +     
Sbjct: 178 IKPQLEDNDKLETTDA 193


>gi|227542217|ref|ZP_03972266.1| Holliday junction DNA helicase motor protein [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227182046|gb|EEI63018.1| Holliday junction DNA helicase motor protein [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 200

 Score =  131 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 87/205 (42%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +        +I+  GV Y       TL+ L  +G+   +     + +  + L
Sbjct: 1   MIASLHGEVVAKSLTGGVIECGGVGYEFLATAATLAELP-LGEDGRVLTTMVIGEKVVTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +R  F  LQ VQG+G ++A+  L+  + +E+  ++   + K +  IPG+  ++
Sbjct: 60  YGFAHDSERTMFSQLQDVQGLGPKLALACLNTYSPSEIAVAVANDDKKTLQAIPGVGARM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+++   L GK            S          +        ++ALV LG+ +D A  A
Sbjct: 120 AAKMTAVLDGKLDEFIDSTATTSSAAEPVTGGSET-------VVAALVQLGFDEDSANHA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
                +      D    +R AL+ +
Sbjct: 173 AAWAEESNPGG-DTGTNLRHALQYL 196


>gi|260890744|ref|ZP_05902007.1| holliday junction DNA helicase RuvA [Leptotrichia hofstadii F0254]
 gi|260859622|gb|EEX74122.1| holliday junction DNA helicase RuvA [Leptotrichia hofstadii F0254]
          Length = 211

 Score =  131 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 57/211 (27%), Positives = 102/211 (48%), Gaps = 8/211 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +     DYV +D+ G+ Y +Y  ++T   L  IG+   L+V T++++D I L
Sbjct: 1   MFEYISGKLTIKKIDYVALDINGLAYKVYVSLKTFEKLDNIGNDEKLYVYTNVKEDDISL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F  L S+ GVG ++ + +LS     E+++ +    SK+  ++PG+ +K 
Sbjct: 61  YGFKTQNERELFKALISISGVGPKLGIAILSTFNTREIIDIVNENESKIFTRVPGLGIKK 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS------FAINAISALVNLGYGQ 174
           A +I+ +LK K   L      +          I S  S         +   AL +LGY  
Sbjct: 121 AQKIILDLKDKVKKLDLTETIEEISDISSGKLITSNTSNPKLLLMKEDLKLALESLGYIN 180

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
              +  +    K+   + D S+ I++ L+ I
Sbjct: 181 SDVSKWITD--KELAQVKDISEAIKIILQKI 209


>gi|330896128|gb|EGH28349.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 128

 Score =  131 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 67/118 (56%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G++      ++++DV GV Y +  P+ TL  L  +G+  TL     +R+D   L
Sbjct: 1   MIGRLRGSLAEKQPPHLVLDVNGVGYEVEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
           +GF    +R+ F  L  + GVG ++A+ ++S +   ELV  +  Q++  + +IPG+  
Sbjct: 61  YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGQ 118


>gi|184201011|ref|YP_001855218.1| Holliday junction DNA helicase RuvA [Kocuria rhizophila DC2201]
 gi|229560091|sp|B2GIL9|RUVA_KOCRD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|183581241|dbj|BAG29712.1| Holliday junction DNA helicase RuvA [Kocuria rhizophila DC2201]
          Length = 213

 Score =  131 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 51/209 (24%), Positives = 92/209 (44%), Gaps = 14/209 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD-QIR 59
           MI  + G +  +     +++V G    ++   RTLS L ++G    L      R+D    
Sbjct: 1   MIASVTGEVAFVGATLAVVEVSGFGIEVHASPRTLSGL-RVGATTRLHTAYIARKDEAPL 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF    +++ F ++  V GVG R A+  +S +   +   +I   + K    +PGI  K
Sbjct: 60  LFGFAQGDEKEIFTVMLGVSGVGPRTALAAVSVLGPEDARRAIAAGDDKAFTAVPGIGPK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ EL  K +         +     +QA+   +P +    + AL  LG+ +  A  
Sbjct: 120 SARRIVLELADKLV---------LPEPPVQQANQPQVPVWRDQVVDALTGLGWSEKDAVR 170

Query: 180 AVVSVLKKEKNIAD---DSQIIRLALRAI 205
            +   L+ +  + D    ++I+R  L  +
Sbjct: 171 GIEDALQTQPELGDSGNVAEILRAVLSWL 199


>gi|313679904|ref|YP_004057643.1| holliday junction DNA helicase subunit ruva [Oceanithermus
           profundus DSM 14977]
 gi|313152619|gb|ADR36470.1| Holliday junction DNA helicase subunit RuvA [Oceanithermus
           profundus DSM 14977]
          Length = 195

 Score =  131 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 102/205 (49%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  ++G +    ED  ++ + G+ + ++CP  TL  L ++G+   L     +R+D + L
Sbjct: 1   MVRFLEGVVLEATEDRAIVSLHGLGFEVFCPTGTLGRL-RVGETARLHTRLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF      +WF LL  V GVG RVA+G+LS + A  L +++   + K++   PG+  K+
Sbjct: 60  YGFHDPRLLEWFDLLVGVSGVGPRVALGLLSALPADLLGQAVTGDDPKLLTAAPGVGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK +     + +    + +    A   +           L+ LG+ + Q    
Sbjct: 120 AERIVLELKTRLPDHLAGLAPSAAPIENPAAGEAAAA---------LITLGFRETQVHAV 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  +  K+   A   ++IRLALR +
Sbjct: 171 VQKLAAKQPE-AGAEELIRLALREL 194


>gi|326803735|ref|YP_004321553.1| Holliday junction DNA helicase RuvA [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651259|gb|AEA01442.1| Holliday junction DNA helicase RuvA [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 203

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  L  + V+++  G+ Y IY P        + G    +++   + QD IRL
Sbjct: 2   MYQYIKGLLVDLTSEAVVVETAGLAYYIYFP-NPYRLSDQKGQQVQVWLYQAVSQDAIRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++Q F+ L SV G+G + A+ +L+       + +I  +N K + + PG+  K 
Sbjct: 61  YGFFDQAEKQLFLQLISVSGIGPKSALSILAYGDQAGFIAAIESENVKFLTKFPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +L+ K   L S   + +    +  +         I   +AL +LGY + +    
Sbjct: 121 AQQIILDLQSKLSRLKS---EALPADQEVISDQSESSQMMIELEAALNSLGYAKREIDQV 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +         + + +  IR+ALR I
Sbjct: 178 IKK--GDFSEVDNTADAIRVALRYI 200


>gi|315604284|ref|ZP_07879350.1| crossover junction ATP-dependent DNA helicase RuvA [Actinomyces sp.
           oral taxon 180 str. F0310]
 gi|315313990|gb|EFU62041.1| crossover junction ATP-dependent DNA helicase RuvA [Actinomyces sp.
           oral taxon 180 str. F0310]
          Length = 201

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 93/205 (45%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     D+V + V G+ + ++        + +     T+     +R+D + L
Sbjct: 1   MISILRGTVASTGLDHVDVVVGGIGFRVHVTPACAQAMAR-DREITVHTSMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L +V G+G ++A+  L+ +   +L  ++  Q+  V+ +IPG+  K 
Sbjct: 60  YGFESSDERDVFAALMTVSGIGPKIALAALAVLRPDDLRRAVRDQDLAVLQRIPGVGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+  E+  K  S        +      ++   +  + A     ALV LG+ + QA  A
Sbjct: 120 AQRMALEIGDKLGS-----PAALPGAGPTRSAPPAEDAVAAEVRVALVGLGWSETQACAA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +     +    S ++R AL  +
Sbjct: 175 IEKLA---GSGLGASDMLRAALVTL 196


>gi|78777407|ref|YP_393722.1| Holliday junction DNA helicase motor protein [Sulfurimonas
           denitrificans DSM 1251]
 gi|123727548|sp|Q30R94|RUVA_SULDN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|78497947|gb|ABB44487.1| Holliday junction DNA helicase subunit RuvA [Sulfurimonas
           denitrificans DSM 1251]
          Length = 188

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 20/205 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +      +V +DV GV Y ++  +++ S L   G+   LF    +R+D   L
Sbjct: 1   MIVGVRGVLVSKEPSFVHVDVGGVVYEVFISLQSFSALS--GNEVKLFTSHVIREDAQLL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL   +++ F  L  + GVG +VAM + S  T ++    +  ++   + ++PGI  K 
Sbjct: 59  YGFLELGEKKLFERLIKINGVGPKVAMAICSTYTPSQFAVVLNNKDITAVQRVPGIGPKS 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL G    L     +  S                  A  AL +LG+ +D+ + A
Sbjct: 119 AGRILVELSGFDTELIISASEPKSL-------------AVAQASEALESLGFKKDKISKA 165

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +        +  D + +++ AL+ +
Sbjct: 166 L-----GSCSAVDTAILVKEALKLL 185


>gi|16127467|ref|NP_422031.1| Holliday junction DNA helicase RuvA [Caulobacter crescentus CB15]
 gi|221236280|ref|YP_002518717.1| Holliday junction DNA helicase RuvA [Caulobacter crescentus NA1000]
 gi|20455260|sp|Q9A3G7|RUVA_CAUCR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254766950|sp|B8H455|RUVA_CAUCN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|13424921|gb|AAK25199.1| Holliday junction DNA helicase RuvA [Caulobacter crescentus CB15]
 gi|220965453|gb|ACL96809.1| Holliday junction DNA helicase ruvA [Caulobacter crescentus NA1000]
          Length = 205

 Score =  130 bits (328), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 113/206 (54%), Gaps = 4/206 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ-IR 59
           MIG+++G +  + E+  LIDV GV Y++ C  RTL  L  +G+   L +E+   +   +R
Sbjct: 1   MIGRLRGAVAEVGEEEALIDVMGVGYLVRCGHRTLQRLPALGEETLLHIESQWSESAGLR 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL+  DR+ F+LLQ++QGVG + AM VL  ++  EL  ++  ++   + +  G+  K
Sbjct: 61  LYGFLTREDRRAFVLLQAIQGVGPKAAMAVLDVLSPAELASAVAREDKAAVGRANGVGPK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           +A RI+TELK K I+   V+   MS          + P+   +A++AL+ LG  +  A  
Sbjct: 121 LALRIVTELKDKPITDGPVL---MSAPTSSAPSAPAKPAPTGDAVAALMGLGVAEVNARR 177

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            V +   +    A    +I+  L+ +
Sbjct: 178 VVEAAAAELGEEATVQALIKAGLKEL 203


>gi|331701280|ref|YP_004398239.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus
           buchneri NRRL B-30929]
 gi|329128623|gb|AEB73176.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus
           buchneri NRRL B-30929]
          Length = 199

 Score =  130 bits (328), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 89/205 (43%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G +  +   ++++ V GV Y+I                  +++   +    I L
Sbjct: 1   MFEFLEGTVVDITPTHIVLLVGGVGYLIN-TADPYRFNVDEKKVIRVYIYQSVSDTAILL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  D+Q F  L SV G+G + A+ +L+      L+ +I  ++ K + + PG+  K 
Sbjct: 60  FGFATIEDKQIFEKLISVSGIGPKSALAILAGNDRDGLITAINNEDVKFLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +++GK   +++           +            +A+SAL  LGYG  Q    
Sbjct: 120 ARQIILDMQGKLDDIATN-----GVSLAQPLGSNEKSPELADALSALEALGYGAKQIAAI 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              ++K+        + + L L+ +
Sbjct: 175 EPDLVKQA--DLSTDEYLSLGLKLL 197


>gi|295099824|emb|CBK88913.1| Holliday junction DNA helicase subunit RuvA [Eubacterium
           cylindroides T2-87]
          Length = 193

 Score =  130 bits (328), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 107/206 (51%), Gaps = 18/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +  D V++DV GV Y ++      +   KIGD   L+   H+R+D + L
Sbjct: 1   MIAFVSGIVRLIRTDSVVLDVHGVGYEVFISN---ALTQKIGDELFLYTYQHVREDAMLL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   D + FM L +V+G+G + A  +L+    ++++++I   + K++  +PGI  K 
Sbjct: 58  YGFIKQEDYEVFMRLINVKGIGPKTAQTMLAVCPGSKMIQAIEEDDVKLLKSLPGIGAKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK +S+ +  +   + V K                 ALV LGY  +Q +  
Sbjct: 118 ASQIVLDLKGKFVSVETKEETISNPVWK-------------ETQEALVALGYKVNQLSGV 164

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
              +    K   + ++++R+AL  ++
Sbjct: 165 RKELA--NKTDLNVNEMLRMALAILA 188


>gi|126654019|ref|ZP_01725852.1| Holliday junction DNA helicase motor protein [Bacillus sp. B14905]
 gi|126589493|gb|EAZ83637.1| Holliday junction DNA helicase motor protein [Bacillus sp. B14905]
          Length = 206

 Score =  130 bits (328), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 89/196 (45%), Gaps = 3/196 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +  +Y++++ QG+ + +  P         +     ++V  H+R+D   L
Sbjct: 1   MYDYLKGLITRITPEYIVLEQQGIGWQLNTPNPFAFRTSALEQQ--IYVHLHVREDAQML 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +   R+ F  L  V G+G + A+ +L+     +++ +I  ++   + + PG+  K 
Sbjct: 59  YGFPNLDQRELFRKLILVSGIGPKGALAILATGNPQQVISAIEREDEAFLVKFPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK  SL   ++   +        + +       AI AL+ LGY + +    
Sbjct: 119 ARQMILDLKGKLGSLLETIELPSTEDELPLFGVNAYKHELEEAILALMALGYSEKELEK- 177

Query: 181 VVSVLKKEKNIADDSQ 196
           +   L+    +     
Sbjct: 178 IRPQLEDNDKLETTDA 193


>gi|300774281|ref|ZP_07084145.1| crossover junction ATP-dependent DNA helicase RuvA
           [Chryseobacterium gleum ATCC 35910]
 gi|300506925|gb|EFK38059.1| crossover junction ATP-dependent DNA helicase RuvA
           [Chryseobacterium gleum ATCC 35910]
          Length = 194

 Score =  130 bits (328), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 99/205 (48%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G ++ L   Y +I+VQGV Y +   + T   L  +     LF++  +R+D   L
Sbjct: 1   MIFSLQGIVQELTPTYAVINVQGVGYYVGISLMTSQTLV-LNQQTFLFIQQIIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++ F LL SV GVGA  A+ +LS ++  E+  +I+  NS +I +  GI  K 
Sbjct: 60  FGFNTRSEKEMFNLLISVNGVGAVSALILLSTLSLDEIASAILSGNSALIQKAKGIGAKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K    S                +         ++SAL  LG  +  +   
Sbjct: 120 AERIIVDLKDKVQKYSDPNA---------NISVMVDNKIKEESLSALEVLGIPKRTSEKI 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              ++K+  +I    ++++  L+ I
Sbjct: 171 ADKIIKQNPSI-SVEELVKQILKNI 194


>gi|167644751|ref|YP_001682414.1| Holliday junction DNA helicase RuvA [Caulobacter sp. K31]
 gi|189045745|sp|B0SUN8|RUVA_CAUSK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|167347181|gb|ABZ69916.1| DNA recombination protein RuvA domain I [Caulobacter sp. K31]
          Length = 204

 Score =  130 bits (328), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 110/206 (53%), Gaps = 5/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ-IR 59
           MIG+++G +  + E+  LIDV GV Y++ C  RTL  L  +G+   L +E+   +   +R
Sbjct: 1   MIGRLRGAVAEIGEEEALIDVMGVGYVVRCGSRTLQRLPALGEEALLHIESQWSESAGLR 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  DR+ F+LLQ++QGVG + AM VL  ++  EL  ++  ++   + +  G+  K
Sbjct: 61  LYGFGTREDRRAFVLLQAIQGVGPKAAMAVLDVLSPAELASAVAREDKAAVGRASGVGPK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           +A RI+TELK K I+   V+      V    A          +A++AL+ LG  +  A  
Sbjct: 121 LALRIVTELKDKPITDGPVLMTAPGAVAAAPAKAAPTG----DAVAALMGLGVAEVNARR 176

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            V +   K  + A    +I+  L+ +
Sbjct: 177 VVEAAAAKLGDEATVQALIKAGLQEL 202


>gi|260654961|ref|ZP_05860449.1| holliday junction DNA helicase RuvA [Jonquetella anthropi E3_33 E1]
 gi|260630276|gb|EEX48470.1| holliday junction DNA helicase RuvA [Jonquetella anthropi E3_33 E1]
          Length = 200

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 90/205 (43%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  ++G +  L     +++  G+ + +    +    L ++G+   L     +    + L
Sbjct: 1   MLASLRGTVILLEGSSAVVECGGLGFQVQLTRKAFG-LCRVGESVFLQTYLQVSDAGMSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +RQ F LL +V+GVG ++AM VL  ++A E + ++   +SK +  +PGI  K 
Sbjct: 60  FGFADAAERQAFELLTTVKGVGGKLAMTVLQSLSAQETIAAVAAGDSKTLTAVPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  EL  K    S     D++   +               I AL +LG+    +  A
Sbjct: 120 AERICFELSEKITGSSEWSSADLTAKLQHS----------DEVIEALESLGFDHASSVRA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              + ++    A   + I   LR +
Sbjct: 170 YQQLCQERGEPASTEEAIFNCLRLL 194


>gi|219669644|ref|YP_002460079.1| Holliday junction DNA helicase RuvA [Desulfitobacterium hafniense
           DCB-2]
 gi|219539904|gb|ACL21643.1| Holliday junction DNA helicase RuvA [Desulfitobacterium hafniense
           DCB-2]
          Length = 198

 Score =  130 bits (327), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 55/202 (27%), Positives = 103/202 (50%), Gaps = 8/202 (3%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64
           ++G +  +  D +++DVQGV Y +  P   L      G    L+    +R+D++ L+GF 
Sbjct: 2   LRGKVWEIQADKLILDVQGVGYQLSIPYGLLGK-AHPGHELILYTHVILREDELALYGFS 60

Query: 65  SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           S  +++ F+L+ SV G+G + A+ +LS +   +   +I  +N  ++ ++PGI  K A R+
Sbjct: 61  SAAEKELFLLMLSVSGIGPKAALSILSTLGIGQTESAIASENITLLTKVPGIGKKTAQRL 120

Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV 184
           + ELK K         + ++    E A      +F   A+  L+ LG+ Q++A  A+   
Sbjct: 121 ILELKEKFK------GRAIALEGIEGAGSLPQAAFHSEAMETLLALGFSQEEAKKAL-QA 173

Query: 185 LKKEKNIADDSQIIRLALRAIS 206
           L          + +RLALR+++
Sbjct: 174 LPDSAQALSTEEQVRLALRSLA 195


>gi|149923021|ref|ZP_01911439.1| Holliday junction DNA helicase motor protein [Plesiocystis pacifica
           SIR-1]
 gi|149816142|gb|EDM75652.1| Holliday junction DNA helicase motor protein [Plesiocystis pacifica
           SIR-1]
          Length = 206

 Score =  130 bits (327), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 61/193 (31%), Positives = 101/193 (52%), Gaps = 4/193 (2%)

Query: 17  VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76
           V++DV+GV Y ++  I+TL+ +   GD   L+V T++R+D I LFGF    +R  F +L 
Sbjct: 11  VILDVKGVGYELFVSIQTLAGVPAEGDEVELWVHTNVREDAITLFGFAEAEERLLFRMLT 70

Query: 77  SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136
           SV  VG R A+ VL    A EL+E+I  ++S  + +IPGI  K + +I+  L  K ++L 
Sbjct: 71  SVPKVGPRNAVAVLGGFPAIELLETIAAKDSAKLVKIPGIGKKTSEQIVLTLGDKVVTLL 130

Query: 137 SVVQQDMSCVNKEQAH--ICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADD 194
            +++         QA       P F   A   L++LG+       A+V+V  +    A+ 
Sbjct: 131 ELLRAQRGGEPGTQAELLPAEAPDFGTEAREVLLSLGWKGRAVEKALVAVEAELAEGANV 190

Query: 195 --SQIIRLALRAI 205
               ++R+ L  +
Sbjct: 191 QLDALVRMTLAKL 203


>gi|307299266|ref|ZP_07579067.1| Holliday junction DNA helicase RuvA [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915062|gb|EFN45448.1| Holliday junction DNA helicase RuvA [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 197

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 98/205 (47%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  I+G +  + E  ++I V G+ + + C   T+S L    D   L    + +     L
Sbjct: 1   MLEGIEGRVREIRETEIVIQVGGLFFKVNCTPNTISKLPVEKDVYLLTFMAYSQDRPPEL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +++ F +L     +G + AM +LS  + + +   I  +N+  ++ +PGI  K 
Sbjct: 61  YGFYDQEEKELFNILLRASKIGPKSAMKILSSASPSRIKHIISTKNAAELSSLPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL             D S +  E+       S    A++AL +LG+ ++Q+   
Sbjct: 121 AERMIVEL---------ASLVDTSGITDEETIPGVERSHGEEAVAALTSLGFDENQSRKV 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+ +LK E+ I D   +I+ AL+ I
Sbjct: 172 VIEILKAEREI-DTHDLIKKALKEI 195


>gi|218961233|ref|YP_001741008.1| Holliday junction DNA helicase RuvA [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729890|emb|CAO80802.1| Holliday junction DNA helicase RuvA [Candidatus Cloacamonas
           acidaminovorans]
          Length = 202

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 97/205 (47%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G +        +I+  G+ + +  PI T   L   G  C L    H+ QD IR+
Sbjct: 4   MIQYISGTLTFKTPVLAIIETMGIGWELKIPISTYEKLPTAGKPCKLLTYLHISQDDIRI 63

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +R+ F++L  V G+G ++A+ +LS ++    ++++      ++ ++PGI  K 
Sbjct: 64  FGFATEAERELFVMLNKVGGIGPKIALSILSTLSIPTFIKAVNSGEEGLLTRVPGIGKKS 123

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK     L          +N        +   +    SAL++LG+   Q    
Sbjct: 124 AQRLIVELKDDVHKL----------LNHIDQKELQIGDVSSEVESALLSLGFNLHQIRKE 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +++ +     +  ++I+  ++ I
Sbjct: 174 L-ALMDESMQKLNTEELIKEIIKRI 197


>gi|313888460|ref|ZP_07822127.1| Holliday junction DNA helicase RuvA [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845489|gb|EFR32883.1| Holliday junction DNA helicase RuvA [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 194

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 96/205 (46%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +      Y++++  G+ YI+    R L    +  +   + +   +R+D   L
Sbjct: 1   MIEFLRGRVHSTDRGYLVLESNGIGYIVNMVERELHTFYE-NEEVFINIRLVLREDAAIL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F LL SV G+G ++AMG+L       + + II ++ K + ++PGI  K 
Sbjct: 60  YGFRHIETRDAFDLLTSVTGIGPKLAMGILDGDDVFNIAKYIISKDEKSLTKLPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K   L+  +      V   +    S       A+ AL++LGY    A  A
Sbjct: 120 AQRIILELKDKVEKLALDLTSMTDDVEIIEEKDDS-------AVEALISLGYNVYDAKKA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  V        D S+ IR AL+ +
Sbjct: 173 LEKV----DPSLDISERIREALKLM 193


>gi|330466911|ref|YP_004404654.1| Holliday junction DNA helicase RuvA [Verrucosispora maris
           AB-18-032]
 gi|328809882|gb|AEB44054.1| Holliday junction DNA helicase RuvA [Verrucosispora maris
           AB-18-032]
          Length = 200

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 99/206 (48%), Gaps = 11/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     D+ +I+V GV   + C   T++ L ++G    L     +R+D + L
Sbjct: 1   MIASVRGVVTATGPDHAVIEVGGVGLAVQCAPGTIADL-RVGQPARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D  +  F LLQ+  GVG R+A  VL+  T   + ++I   ++  + ++PGI  K 
Sbjct: 60  YGFADDDAKALFELLQTASGVGPRLAQAVLAVHTPDAVRKAIANADTAALTRVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +   +          V  + A   +  ++      AL+ LG+   QA  A
Sbjct: 120 AERLVLELRDRIGPV---------PVGADGAAGVTGGAWPEQVRQALIGLGWTASQADQA 170

Query: 181 VVSVLKK-EKNIADDSQIIRLALRAI 205
           V +V +  +        +++ A+R +
Sbjct: 171 VAAVAETVDGAAPPVPVLLKQAIRLL 196


>gi|169836412|ref|ZP_02869600.1| Holliday junction DNA helicase, subunit A [candidate division TM7
           single-cell isolate TM7a]
          Length = 192

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/204 (23%), Positives = 91/204 (44%), Gaps = 12/204 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G I   +   ++IDV G+ Y ++  +     L  +G+    +   H+R+    L
Sbjct: 1   MIAHVRGKISEKFNGSIIIDVNGLGYELFVSVVDF-DLVNLGESVKFYTYHHVREQSEEL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +   ++ F +L SVQGVG + A+ +LS      +  +I   N+  I +  G+  K 
Sbjct: 60  FGFSTLSAKKIFEMLISVQGVGPKAALAILSLGNVETVRNAIANSNAGFIQKASGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +L  K               N  +    +  + +  A+ AL+ LGY    A+ A
Sbjct: 120 ADRVVVDLHDKV-------GLPTKYENSNEIIENNQLNSSDEAVEALMALGYTLADASEA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           + ++          ++ +  AL+ 
Sbjct: 173 LKNI----DTDLSTAERVTKALQQ 192


>gi|218281325|ref|ZP_03487813.1| hypothetical protein EUBIFOR_00378 [Eubacterium biforme DSM 3989]
 gi|218217510|gb|EEC91048.1| hypothetical protein EUBIFOR_00378 [Eubacterium biforme DSM 3989]
          Length = 192

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 60/207 (28%), Positives = 104/207 (50%), Gaps = 21/207 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G ++ +  D V++DV GV Y +Y     LS   K+ +   L+   H+R+D I L
Sbjct: 1   MIAFVNGIVKIIRNDRVVLDVHGVGYEVYL-ANALSQ--KMNEELFLYTYQHVREDAILL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+ + D + FM L +V+G+G + A  +LS  +  E++E+I   + K +  +PGI  K 
Sbjct: 58  FGFIKEEDYEVFMRLINVKGIGPKTAQTMLSVCSGKEMIEAIENDDIKRLKSLPGIGAKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK +SL               +              AL++LGY  +Q    
Sbjct: 118 AGQIVLDLKGKFVSLE-------------TSDSPVSNPVWTQVQDALLSLGYKTNQ---- 160

Query: 181 VVSVLKK-EKNIADDSQIIRLALRAIS 206
           +  + K+ E     + +++R AL  ++
Sbjct: 161 LTKIKKEFENTELGEDEMLRQALILLA 187


>gi|229814935|ref|ZP_04445273.1| hypothetical protein COLINT_01978 [Collinsella intestinalis DSM
           13280]
 gi|229809422|gb|EEP45186.1| hypothetical protein COLINT_01978 [Collinsella intestinalis DSM
           13280]
          Length = 207

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/183 (29%), Positives = 91/183 (49%), Gaps = 1/183 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +        +IDV G+ + +     T S L ++G    L+    +R+D   L
Sbjct: 1   MISILNGTLIEATAGSAVIDVNGIGFELGISATTASSLAQVGSPTRLYTRMVVREDSCTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L SV GVGA++A+ +LS  T  EL   +++++ K +A +PG+  K 
Sbjct: 61  FGFATKDERTMFDKLVSVSGVGAKLALAILSSFTVPELYTLVMMEDDKGMATVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCV-NKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A R++ ELKG      S+       V         + PS   +A +AL+++G+   + T 
Sbjct: 121 AQRLILELKGVFEKDRSLAGSAAPTVPLPFAPAAAAAPSAIEDATAALLSMGFTAAEVTL 180

Query: 180 AVV 182
           A+ 
Sbjct: 181 ALD 183


>gi|148242421|ref|YP_001227578.1| Holliday junction resolvasome DNA-binding subunit [Synechococcus
           sp. RCC307]
 gi|166231453|sp|A5GTL6|RUVA_SYNR3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|147850731|emb|CAK28225.1| Holliday junction resolvasome DNA-binding subunit [Synechococcus
           sp. RCC307]
          Length = 208

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/211 (22%), Positives = 90/211 (42%), Gaps = 12/211 (5%)

Query: 1   MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG + G I   +++    ++L+    V Y +            +    T+      R+D
Sbjct: 1   MIGWLHGTIGDRWQEGNRCWLLLICGPVGYELQVSESLWRG-TALESPTTVHTHLQQRED 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
             +L+GF +  DR  F LL SV GVG +VA+G++S + A  L++++  ++ KV+ Q PG+
Sbjct: 60  GQQLYGFETKADRNLFRLLISVNGVGPQVALGLISGLGAVSLLQAMAAEDVKVLCQAPGV 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             + A R+  E + +                     +    + +    + L  LGYG ++
Sbjct: 120 GKRTAERLSLEWRSRLQERWQQQGGST------PLRLVEPVAESRELRATLEALGYGPEE 173

Query: 177 ATTAVVSV-LKKEKNIADDSQIIRLALRAIS 206
            + AV     +         + +R  L  +S
Sbjct: 174 VSAAVAQAGSQGLDPEQPMEEWLRHCLAWLS 204


>gi|323342039|ref|ZP_08082272.1| crossover junction ATP-dependent DNA helicase RuvA [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322464464|gb|EFY09657.1| crossover junction ATP-dependent DNA helicase RuvA [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 195

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 93/205 (45%), Gaps = 17/205 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G       DYV++D  G+ Y ++C       +  + +        H+R+D I L
Sbjct: 1   MIAFISGVAVDRGIDYVVVDNHGIGYQVFCGNP---EMVTLNESIIFHTYQHVREDAIIL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+   +   F  L +V+GVG +  + +LSR +  ++V +I  ++   + ++PG+  K+
Sbjct: 58  FGFVEKRELDIFRQLITVKGVGPKTGITILSRFSGDDIVRAIDQEDMAFLKKLPGVGPKM 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS++M +LKGK I             +   +           A+ AL +LG+ + +    
Sbjct: 118 ASQMMLDLKGKFI------------ASDTPSTTKKALPLVDEALDALGDLGFKKVELNNI 165

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +     N+     +I+  L+ +
Sbjct: 166 KHEL--SLLNLDSVDDMIKEGLKLL 188


>gi|227499581|ref|ZP_03929688.1| crossover junction endoribonuclease subunit A [Anaerococcus
           tetradius ATCC 35098]
 gi|227218340|gb|EEI83594.1| crossover junction endoribonuclease subunit A [Anaerococcus
           tetradius ATCC 35098]
          Length = 195

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 100/205 (48%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G++  + E+  +I+   + Y+IY  + TLS L +I     ++    +R+D I L
Sbjct: 1   MISYIIGHVRNIDEESFIIENNNIGYLIYSSLATLSNL-EINSEYKIYTSMQVREDDISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  + + F LL SV  +G + AMG+LS I+  E+  +++  +   +    GI  K 
Sbjct: 60  FGFFTKDELEMFSLLTSVSTIGPKTAMGILSSISVNEIKTAVVNNDIDKLTLAKGIGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ EL  K   +S V  +++   +        +      A  AL+NLGY ++     
Sbjct: 120 ASRIILELVDKVKKMSFVPVENIKQDDM-------LNEDFEVAKEALLNLGYQKNDVDRV 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +   +        +++ +L+ +
Sbjct: 173 LSELKDTD---LSLEGLVKESLKRL 194


>gi|22298075|ref|NP_681322.1| Holliday junction DNA helicase motor protein [Thermosynechococcus
           elongatus BP-1]
 gi|34222868|sp|Q8DLG1|RUVA_THEEB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|22294253|dbj|BAC08084.1| Holliday junction DNA helicase [Thermosynechococcus elongatus BP-1]
          Length = 210

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/213 (23%), Positives = 93/213 (43%), Gaps = 13/213 (6%)

Query: 1   MIGKIKGNIEGLYED-----YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55
           M   ++G + G   +      ++++V GV Y +      L       +   +F    +R+
Sbjct: 1   MFVYLRGTVVGHQSEGGHRCALILEVNGVGYRLLVTSHLLQQYPPRPEVVQIFTHLSIRE 60

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           DQ+ L+GF S  +R  F+ L  V GVG ++A+ +L  +   ELV++I+  N++ +++ PG
Sbjct: 61  DQMLLYGFASAAERDLFLRLIRVNGVGPQMALSLLDTLPLPELVQAIVSGNTRRLSRAPG 120

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           +  K A RI  ELK    +    +    +        +       + A+      GY   
Sbjct: 121 VGHKTAERIALELKAALSAWRQEMGFTTASSGLPSEAVREELELTLLAL------GYSDR 174

Query: 176 QATTAVVSV--LKKEKNIADDSQIIRLALRAIS 206
           +   A+ +V       N +D    +R A+  +S
Sbjct: 175 EIAAALTAVGQTTTLPNNSDPEAWLREAIAWLS 207


>gi|300813213|ref|ZP_07093581.1| Holliday junction DNA helicase RuvA [Peptoniphilus sp. oral taxon
           836 str. F0141]
 gi|300512666|gb|EFK39798.1| Holliday junction DNA helicase RuvA [Peptoniphilus sp. oral taxon
           836 str. F0141]
          Length = 198

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 112/206 (54%), Gaps = 9/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  IKGNI  +YE  +++D   + Y+I      +S L  + +   +++   +R+D I L
Sbjct: 1   MLDFIKGNISEIYEGEIVLDNNDIGYLISISQLDISKL-SLNEELKIYLRLILREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+   R  F LL +V  VG +++M +L  + +++L  +I+ +++ ++ + PG+  K 
Sbjct: 60  YGFLNKDSRTLFDLLNTVSSVGPKLSMTILGALGSSQLRSAILSEDANILTKSPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ ELK K    S     D+S ++       +       A+ AL++LGY + +A  A
Sbjct: 120 ANRIILELKDKISKKSFTEDLDLSILDSSDTIDINNDP----ALEALLSLGYNEYEAKIA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +V        + S+IIR AL+ ++
Sbjct: 176 LRNV----DQSQELSEIIRQALKVMA 197


>gi|282882990|ref|ZP_06291594.1| holliday junction DNA helicase RuvA [Peptoniphilus lacrimalis
           315-B]
 gi|281297197|gb|EFA89689.1| holliday junction DNA helicase RuvA [Peptoniphilus lacrimalis
           315-B]
          Length = 198

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 114/206 (55%), Gaps = 9/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  IKGNI  +YE  +++D   + Y+I      +S L  + +   +++   +R+D I L
Sbjct: 1   MLDFIKGNISEIYEGEIVLDNNDIGYLISISQLDISKL-SLNEELKIYLRLILREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+   R  F LL +V  VG +++M +L  + +++L  +I+ +++ ++ + PG+  K 
Sbjct: 60  YGFLNKDSRTLFDLLNTVSSVGPKLSMTILGALGSSQLRSAILSEDANILTKSPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+RI+ ELK K    S     D+S ++       +       A+ AL++LGY + +A  A
Sbjct: 120 ANRIILELKDKISKKSFTEDLDLSILDSSDTIDINNDP----ALEALLSLGYNEYEAKIA 175

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + +V + +    + S+IIR AL+ ++
Sbjct: 176 LRNVDQNQ----ELSEIIRQALKVMA 197


>gi|206889338|ref|YP_002248715.1| holliday junction DNA helicase RuvA [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|226698744|sp|B5YKF0|RUVA_THEYD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|206741276|gb|ACI20333.1| holliday junction DNA helicase RuvA [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 190

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 21/206 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  IKG +  +  D ++I   G+ Y +  PIR    + +  +   +F    ++++ I +
Sbjct: 1   MLDFIKGKVITVKPDKIVIQTGGIGYSVKIPIRVSRYINR-DEETQIFTSLIVKEESIEI 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL   +R  F  L  + G+G ++A+ +LS      L + I  ++ K +++IPGI  K 
Sbjct: 60  YGFLESSERDLFEELIKIAGIGPKMAINILSTYDRETLYKIIDHEDIKSLSKIPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL+G   SL                          + +SAL+NLGY + +A   
Sbjct: 120 AQRILLELRGILPSLQ-----------------YEKDQKYDDILSALLNLGYKRLEAKEV 162

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +   EK+ A    IIR +L  ++
Sbjct: 163 LDKIYNNEKDEAT---IIRESLSILA 185


>gi|34763029|ref|ZP_00144004.1| Holliday junction DNA helicase ruvA [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|237742027|ref|ZP_04572508.1| holliday junction DNA helicase ruvA [Fusobacterium sp. 4_1_13]
 gi|256845368|ref|ZP_05550826.1| Holliday junction DNA helicase RuvA [Fusobacterium sp. 3_1_36A2]
 gi|294785335|ref|ZP_06750623.1| holliday junction DNA helicase RuvA [Fusobacterium sp. 3_1_27]
 gi|27887289|gb|EAA24385.1| Holliday junction DNA helicase ruvA [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|229429675|gb|EEO39887.1| holliday junction DNA helicase ruvA [Fusobacterium sp. 4_1_13]
 gi|256718927|gb|EEU32482.1| Holliday junction DNA helicase RuvA [Fusobacterium sp. 3_1_36A2]
 gi|294487049|gb|EFG34411.1| holliday junction DNA helicase RuvA [Fusobacterium sp. 3_1_27]
          Length = 194

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 98/205 (47%), Gaps = 15/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +E    DY+ ID+ GV Y +Y P+R    + ++G+    ++  H+++D  +L
Sbjct: 1   MFEYLYGTVEYKKMDYIAIDINGVGYRVYFPLREYEKI-EVGNKYKFYIYNHIKEDTYKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GFL + DR+ F LL  + G+G+ +A+ VLS  +  +++E I   +   + Q+P +  K 
Sbjct: 60  IGFLEEGDRKIFELLLKINGIGSSLALAVLSNFSYNKIIEIISKNDYTTLRQVPKLGEKK 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A  I+ +LKGK  +L    ++ +S                 + I AL  LGY + +    
Sbjct: 120 AQIIILDLKGKLKNLIYTEEETVSM------------DMLDDLILALEGLGYNKKEIDKT 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +       +     I+  L+ +
Sbjct: 168 LEKI--DLSKFSSLEDAIKGILKNM 190


>gi|300172987|ref|YP_003772153.1| Holliday junction DNA Helicase RuvA [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887366|emb|CBL91334.1| holliday junction DNA helicase RuvA [Leuconostoc gasicomitatum LMG
           18811]
          Length = 196

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/206 (23%), Positives = 93/206 (45%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           M   I G I  +Y  Y++I D  GV Y ++          +      ++VE  +R+++I 
Sbjct: 1   MYEYINGLITNIYPAYLVICDRSGVGYKLFV-ANPYRF--EQNVESHVYVEQIVRENEIT 57

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           ++GF+ + ++  F  L +V G+G + A+ +L+   +  LV ++   ++  + Q PG+  K
Sbjct: 58  MYGFIDENEKILFNKLLNVSGIGPKSALAILASDDSVGLVNAVANDDATYLTQFPGVGKK 117

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +I+ +LKGK   L+       S          +      +A+ AL +LGY   +   
Sbjct: 118 TAQQIVLDLKGKLDDLA------ASVGMTTPVSQPNSNQALSDALEALNSLGYSTKEIAK 171

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
              ++  K          IR AL+ +
Sbjct: 172 LEKTLAAKHD---TTDGYIRSALKLL 194


>gi|332799127|ref|YP_004460626.1| Holliday junction ATP-dependent DNA helicase ruvA
           [Tepidanaerobacter sp. Re1]
 gi|332696862|gb|AEE91319.1| Holliday junction ATP-dependent DNA helicase ruvA
           [Tepidanaerobacter sp. Re1]
          Length = 193

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/207 (25%), Positives = 100/207 (48%), Gaps = 16/207 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQIR 59
           M+  ++G +  +  D+ +ID+ G    +   + T + +  ++G+   L+ +  +R D + 
Sbjct: 1   MLDYLEGVLVHVEPDFAIIDIGGWGLKLNISMFTYNKIKTELGNKLKLYTQMVLRDDAVE 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF   ++RQ ++LL  V G+G + A+ +LS +    L  SI+ ++ K + ++PGI  K
Sbjct: 61  LFGFFDVVERQAYVLLNKVSGIGPKAAISILSLMDVARLKTSILSEDVKDLVKVPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +I+ ELK +   L     + M              +  I A  AL++LG+   +   
Sbjct: 121 TAQKIIIELKDRIKDLPVTSDEGM-------------YNSIIEAREALISLGFNPMEIQL 167

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
            +       KN      II+ AL+ +S
Sbjct: 168 VLDE--DSVKNNDSVEDIIKCALKKLS 192


>gi|313897511|ref|ZP_07831054.1| Holliday junction DNA helicase RuvA [Clostridium sp. HGF2]
 gi|312957881|gb|EFR39506.1| Holliday junction DNA helicase RuvA [Clostridium sp. HGF2]
          Length = 212

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 94/208 (45%), Gaps = 22/208 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG I     D ++I+  G+ Y +Y        L        L+   H+R+D I L
Sbjct: 20  MIAFIKGIIHSYSNDSLIIENNGIGYRVYVANPMAVRL---NAEVILYTYQHVREDAITL 76

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +   F+ L SV+GVG + A+G+L    A  ++ +I   + K +  +PGI  K 
Sbjct: 77  FGFTTMEEHDLFLQLISVKGVGPKTALGMLGVCPARNMIAAIESNDVKTLKGLPGIGAKT 136

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK +   + ++                    ++A+ AL  LGY   +    
Sbjct: 137 ASQIVLDLKGKLVEEVTELE-------------VKENEQLLDALEALKALGYKNAE---- 179

Query: 181 VVSVLKKEK--NIADDSQIIRLALRAIS 206
           + S+ K+          Q IR  L  ++
Sbjct: 180 LNSIKKELGTLEAMTSDQYIRKGLGILA 207


>gi|324989663|gb|EGC21607.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK353]
 gi|332363708|gb|EGJ41488.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK49]
          Length = 218

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 94/206 (45%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG I  +   Y++++V  + YI++      +  G +     ++V   +R+D   L
Sbjct: 23  MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGHLHQEAKVYVHQVVREDAELL 81

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 82  YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNVGLVQAIEQKNITYLTKFPKIGKKT 141

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK ++     +        +     +       A+ A++ LGY   +    
Sbjct: 142 AQQMVLDLEGKVVAADGQAES-------KAPVQTADNQELEEAMEAMLALGYKAAE---- 190

Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205
           +  + K  +   D     I+ AL+ +
Sbjct: 191 LKKIKKFFEGTTDTAENYIKSALKML 216


>gi|257066397|ref|YP_003152653.1| Holliday junction DNA helicase RuvA [Anaerococcus prevotii DSM
           20548]
 gi|256798277|gb|ACV28932.1| Holliday junction DNA helicase RuvA [Anaerococcus prevotii DSM
           20548]
          Length = 195

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 104/205 (50%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G++  + ED  +I+   + Y+I+  ++TLS + +I +   ++    +R+D I L
Sbjct: 1   MISYIIGHVRSIKEDSFIIENNNMGYLIFSSLKTLSNI-EINNEYKIYTSMQVREDDISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  + + F LL SV  +G ++AMG+LS I+  E+  +II  +   +    GI  K 
Sbjct: 60  FGFFTKDELEMFTLLTSVSTIGPKIAMGILSSISVNEIKTAIINNDIDKLTVAKGIGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ EL  K   +  V  +++   +K+   I         A  AL+NLGY ++     
Sbjct: 120 ASRIILELVDKVKKMDFVPVENIELNSKDNEEIDV-------AREALLNLGYEKNDVEKV 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +   +        +++ +L+ +
Sbjct: 173 LFELKDTD---LSLEGLVKESLKRL 194


>gi|323350703|ref|ZP_08086364.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis VMC66]
 gi|322123123|gb|EFX94814.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis VMC66]
          Length = 218

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 95/206 (46%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG I  +   Y++++V  + YI++      +  G++     ++V   +R+D   L
Sbjct: 23  MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGQLHQEAKVYVHQVVREDAELL 81

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 82  YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK ++   + +        +             A+ A++ LGY   +    
Sbjct: 142 AQQMVLDLEGKVVAADGLAES-------KAPVQTVDNQELEEAMEAMLALGYKAAE---- 190

Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205
           +  + K  +   D     I+ AL+ +
Sbjct: 191 LKKIKKFFEGTTDTAENYIKSALKML 216


>gi|325685740|gb|EGD27818.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           delbrueckii subsp. lactis DSM 20072]
          Length = 197

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 92/205 (44%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G I  +   YV+I+V G+ Y I  P        K GD   ++VE  +R++ + L
Sbjct: 1   MYEYFEGTITVVNPAYVVIEVAGIGYRILTPTPYAY---KDGDKARIYVEQVVRENGMTL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  D+  F  L  V G+G + A+ +++      L  +I       + + PGI  K 
Sbjct: 58  YGFKSQQDKVLFNKLNEVSGIGPKSALAIMAAEDNGALASAIESGEVSYLTRFPGIGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +L+GK  +  +        +  E   + S+     +A+ AL  LGY Q +    
Sbjct: 118 ASQIVLDLRGKMGNYVAE------NLFTEDEPVKSVFPALEDALLALGALGYSQKEVDR- 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +   LKK        + I+  L  +
Sbjct: 171 IKPKLKKLPE-MSADEYIKQGLGLL 194


>gi|119025822|ref|YP_909667.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium
           adolescentis ATCC 15703]
 gi|166230520|sp|A1A1K2|RUVA_BIFAA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|118765406|dbj|BAF39585.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 205

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/210 (26%), Positives = 101/210 (48%), Gaps = 14/210 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G++E +     +I+V GV Y +  P   L+ +   G    ++   ++ QD I L
Sbjct: 1   MIGMLRGHVESVDAVSAIIEVGGVGYEVRMPSADLASMHA-GQEIKVYTSLNVSQDAITL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +   ++ F+ LQ V G+G +VA+ +LS +    L  ++   ++  +A+ PG+  K 
Sbjct: 60  FGFGTLASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLARAVADGDATALAKAPGLGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELKG             +             + A   +  L++LG+ Q  A  A
Sbjct: 120 AQKIILELKGSIDLSQIEGSSATAS--------TPEDTGAEQVVEGLMSLGWHQQDAAHA 171

Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205
           V +V    +     N  D  ++++LAL ++
Sbjct: 172 VQTVCADNQIETPLNAKDVPRVLKLALTSL 201


>gi|159903243|ref|YP_001550587.1| putative holliday junction DNA helicase RuvA [Prochlorococcus
           marinus str. MIT 9211]
 gi|229560117|sp|A9B9X1|RUVA_PROM4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|159888419|gb|ABX08633.1| putative holliday junction DNA helicase RuvA [Prochlorococcus
           marinus str. MIT 9211]
          Length = 223

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/210 (22%), Positives = 90/210 (42%), Gaps = 5/210 (2%)

Query: 1   MIGKIKG-NIEGLYEDY---VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG +KG  I+          ++   GV Y I    R L  L       ++++   +++D
Sbjct: 1   MIGWLKGEKIDHWNNGNRAGFVLSCNGVGYEIQLSRRNLIALNNYN-VLSIWIHQVLKED 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              LFGF+   +R  F  L +V GVG ++AM +L   +  +L+ ++  +    + +  G+
Sbjct: 60  GSNLFGFIEKSERDLFRKLITVSGVGPQLAMSLLDDNSYEQLIANVQNKEVTKLTRSSGV 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             + A R++ EL+ K        +       + ++             SAL NL Y   +
Sbjct: 120 GKRTAERLILELQNKLSDFDLNNEFSPPTKLRPESAEDLNEELLTEIKSALRNLDYSDFE 179

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
              AV +V     + A  +   +L L++++
Sbjct: 180 ILEAVNTVTSNYLDDAASANERKLLLKSLN 209


>gi|154487345|ref|ZP_02028752.1| hypothetical protein BIFADO_01195 [Bifidobacterium adolescentis
           L2-32]
 gi|154083863|gb|EDN82908.1| hypothetical protein BIFADO_01195 [Bifidobacterium adolescentis
           L2-32]
          Length = 205

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/210 (26%), Positives = 101/210 (48%), Gaps = 14/210 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G++E +     +I+V GV Y +  P   L+ +   G    ++   ++ QD I L
Sbjct: 1   MIGMLRGHVESVDAVSAIIEVGGVGYEVRMPSADLASMHA-GQEIKVYTSLNVSQDAITL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +   ++ F+ LQ V G+G +VA+ +LS +    L  ++   ++  +A+ PG+  K 
Sbjct: 60  FGFGTLASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLARAVADGDATALAKAPGLGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELKG             +             + A   +  L++LG+ Q  A  A
Sbjct: 120 AQKIILELKGSIDLSQIEGSSATAS--------TPEDTGAEQVVEGLMSLGWHQQDAAHA 171

Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205
           V +V    +     N  D  ++++LAL ++
Sbjct: 172 VQTVCADNQIETPLNAEDVPRVLKLALTSL 201


>gi|256026581|ref|ZP_05440415.1| Holliday junction DNA helicase ruvA [Fusobacterium sp. D11]
 gi|289764586|ref|ZP_06523964.1| holliday junction DNA helicase ruvA [Fusobacterium sp. D11]
 gi|289716141|gb|EFD80153.1| holliday junction DNA helicase ruvA [Fusobacterium sp. D11]
          Length = 194

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 99/205 (48%), Gaps = 15/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +E    DY+ ID+ GV Y +Y P+R    + ++G+    ++  H+++D  +L
Sbjct: 1   MFEYLYGTVEYKKMDYIAIDINGVGYRVYFPLREYEKI-EVGNKYKFYIYNHIKEDTYKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GFL + DR+ F LL  + G+G+ +A+ VLS  +  +++E I   +   + Q+P +  K 
Sbjct: 60  IGFLEEGDRKIFELLLKINGIGSSLALAVLSNFSYNKIIEIISKNDYTTLRQVPKLGEKK 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A  I+ +LKGK  +L+   ++ +S                 + + AL  LGY + +    
Sbjct: 120 AQIIILDLKGKLKNLTYTEEETVSV------------DMLEDLVLALEGLGYNKKEIGKT 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +       +     I+  L+ +
Sbjct: 168 LEKI--DLSKFSSLEDAIKGILKNM 190


>gi|161506974|ref|YP_001576928.1| Holliday junction DNA helicase RuvA [Lactobacillus helveticus DPC
           4571]
 gi|172048184|sp|A8YTI1|RUVA_LACH4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|160347963|gb|ABX26637.1| Holliday junction DNA helicase [Lactobacillus helveticus DPC 4571]
          Length = 196

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/193 (26%), Positives = 94/193 (48%), Gaps = 10/193 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G +  +   Y+++DV GV Y +Y P          GD   +F+E  +R   I L
Sbjct: 1   MYEYFEGIVTVITPSYIVVDVNGVGYKVYSPTPFAYQ---KGDKAKIFIEQVVRDTGITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ D+  F+ L SV G+G + A+ +++   A  L E+I     K + + PG+  K 
Sbjct: 58  YGFQSEDDKGLFLKLLSVSGIGPKSALAIMAAEDANSLAEAIEQGEVKYLTRFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK           ++ ++++     ++     +A+ AL+ LGY Q +    
Sbjct: 118 ASQIVLDLKGKLRDY-------VARLDRQDEEQGNISPALNDALLALIALGYTQKEVDRI 170

Query: 181 VVSVLKKEKNIAD 193
              + +   + AD
Sbjct: 171 TTKLEEVNADTAD 183


>gi|116514518|ref|YP_813424.1| Holliday junction DNA helicase RuvA [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|122274750|sp|Q048Y6|RUVA_LACDB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|116093833|gb|ABJ58986.1| Holliday junction DNA helicase subunit RuvA [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|325126230|gb|ADY85560.1| Helicase Holliday junction [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 197

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 92/205 (44%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G I  +   YV+I+V G+ Y I  P        K GD   ++VE  +R++ + L
Sbjct: 1   MYEYFEGTITVVNPAYVVIEVAGIGYRILTPTPYAY---KEGDKARIYVEQVVRENGMTL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  D+  F  L  V G+G + A+ +++      L  +I       + + PGI  K 
Sbjct: 58  YGFKSQQDKVLFNKLNEVSGIGPKSALAIMAAEDNGALASAIESGEVSYLTRFPGIGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +L+GK  +  +        +  E   + S+     +A+ AL  LGY Q +    
Sbjct: 118 ASQIVLDLRGKMGNYVAE------NLFTEDEPVESVFPALEDALLALGALGYSQKEVDR- 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +   LKK        + I+  L  +
Sbjct: 171 IKPKLKKLPE-MSADEYIKQGLGFL 194


>gi|309388950|gb|ADO76830.1| Holliday junction DNA helicase RuvA [Halanaerobium praevalens DSM
           2228]
          Length = 198

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 95/205 (46%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +     + V++ + G+ Y +     T     ++G    +F  T++R+D ++L
Sbjct: 1   MIGYLEGEVIEAEFNKVILGINGIGYELELAGFT--KQPRLGQKLEVFTYTYVREDVLKL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           F F     +Q F +L +V G+G    + +L+ + A   + +I+ +N   + +I GI  K 
Sbjct: 59  FAFPEKSYKQLFEILITVNGIGPSAGLNILNTMPAARFISAILQKNEVTLKEISGIGPKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K    + +        N   +          + + AL  LGY   +   A
Sbjct: 119 AQRLILELQSKLEDFAYL-------QNNNDSEPVVTEEDRQDIVDALTVLGYKISEINKA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +  + ++  + S+ I+L L  +
Sbjct: 172 LREI--EFESETNVSEKIKLTLSQL 194


>gi|237744846|ref|ZP_04575327.1| holliday junction DNA helicase ruvA [Fusobacterium sp. 7_1]
 gi|229432075|gb|EEO42287.1| holliday junction DNA helicase ruvA [Fusobacterium sp. 7_1]
          Length = 194

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 99/205 (48%), Gaps = 15/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +E    DY+ ID+ G+ Y +Y P+R    + ++G+    ++  H+++D  +L
Sbjct: 1   MFEYLYGTVEYKKMDYIAIDINGIGYRVYFPLREYEKI-EVGNKYKFYIYNHIKEDTYKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GFL + DR+ F LL  + G+G+ +A+ VLS  +  +++E I   +   + Q+P +  K 
Sbjct: 60  IGFLEEGDRKIFELLLKINGIGSSLALAVLSNFSYNKIIEIISKNDYTTLRQVPKLGEKK 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A  I+ +LKGK  +L+   ++ +S                 + + AL  LGY + +    
Sbjct: 120 AQIIILDLKGKLKNLTYTEEETVSV------------DMLEDLVLALEGLGYNKKEIGKT 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +       +     I+  L+ +
Sbjct: 168 LDKI--DLSKFSSLEDAIKGILKNM 190


>gi|116617732|ref|YP_818103.1| Holliday junction resolvasome, DNA-binding subunit [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|122272067|sp|Q03YJ2|RUVA_LEUMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|116096579|gb|ABJ61730.1| Holliday junction DNA helicase subunit RuvA [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 196

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 92/206 (44%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           M   I G I  +   Y++I    GV Y +Y          +      ++V+  +R++ I 
Sbjct: 1   MYEYINGLITNITPSYIVIASRSGVGYRLY-SANPYRF--EENVESHVYVQQIVRENDIS 57

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF+   ++  F  L +V G+G + A+ +L+   A  L+ ++   N   + Q PG+  K
Sbjct: 58  LYGFIDADEKALFNKLLNVSGIGPKSALAILANGDAEGLISAVENDNVAYLTQFPGVGKK 117

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +I+ +LKGK   L+S      S  N              +A+ AL+ LGY       
Sbjct: 118 TAQQIVLDLKGKLDELASKTGMVDSSSN------PEQSQALDDALEALLALGYTAKDV-K 170

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
           AV  ++ +  +  D    IR AL+ +
Sbjct: 171 AVAQIIGRNSDTTDG--YIRSALKLL 194


>gi|44888463|sp|Q83GK0|RUVA_TROWT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
          Length = 194

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 110/206 (53%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +    V++++ G+ +++  P    S   ++     L+    +R+D + L
Sbjct: 1   MIASLSGLLEAVRPGSVVVNMHGIGFLVRVP---QSFNPEVDAEVKLYTSLQVREDSVSL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S L+   F  L ++ GVG RVA+ +LS +T  E+  +++  + K + ++ G+  K+
Sbjct: 58  YGFASVLECTVFEQLITISGVGPRVALAILSVLTPAEVAAAVLEGDDKPLQRVSGVGKKL 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A  I+ +L GK  S+    ++    V++           +   + AL+ LG+ + ++  A
Sbjct: 118 AGTIVLQLAGKLTSVPLENRKQEQAVDR-----------SAEIVQALIGLGWQRQESAAA 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V SVL+K++++    +I+R ALR ++
Sbjct: 167 VESVLEKDQSL-TMPEILRNALRYLA 191


>gi|313124267|ref|YP_004034526.1| holliday junction ATP-dependent DNA helicase ruva [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312280830|gb|ADQ61549.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 197

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 92/205 (44%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G I  +   YV+I+V G+ Y I  P        K GD   ++VE  +R++ + L
Sbjct: 1   MYEYFEGTITVVNPAYVVIEVAGIGYRILTPTPYAY---KDGDKARIYVEQVVRENGMTL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  D+  F  L  V G+G + A+ +++      L  +I       + + PGI  K 
Sbjct: 58  YGFKSQQDKVLFNKLNEVSGIGPKSALAIMAAEDNGALASAIESGEVSYLTRFPGIGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A++I+ +L+GK  +  +        +  E   + S+     +A+ AL  LGY Q +    
Sbjct: 118 AAQIVLDLRGKMGNYVAE------NLFTEDEPVKSVFPALEDALLALGALGYSQKEVDR- 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +   LKK        + I+  L  +
Sbjct: 171 IKPKLKKLPE-MSADEYIKQGLGLL 194


>gi|325695327|gb|EGD37227.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK150]
 gi|332365307|gb|EGJ43070.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK1059]
          Length = 218

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 94/206 (45%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG I  +   Y++++V  + YI++      +  G +     ++V   +R+D   L
Sbjct: 23  MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGHLHQEAKVYVHQVVREDAELL 81

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 82  YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK ++   + +        +             A+ A++ LGY   +    
Sbjct: 142 AQQMVLDLEGKVVAADGLAES-------KAPVQTVDNQELEEAMEAMLALGYKAAE---- 190

Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205
           +  + K  +   D     I+ AL+ +
Sbjct: 191 LKKIKKFFEGTTDTAENYIKSALKML 216


>gi|224372976|ref|YP_002607348.1| holliday junction DNA helicase RuvA [Nautilia profundicola AmH]
 gi|254767379|sp|B9L9P0|RUVA_NAUPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|223589102|gb|ACM92838.1| holliday junction DNA helicase RuvA [Nautilia profundicola AmH]
          Length = 184

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 89/206 (43%), Gaps = 26/206 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++GNI       +L+DV  V Y +   + T S +   G     ++   +++++  L
Sbjct: 1   MIAALRGNIFEKDGGKILLDVNNVIYELNVSMITFSSVNDKG---LFYITEIIKENEYTL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +++ F  L  + GVG +VA+ + S  T    ++ I   +   + +IPGI  K 
Sbjct: 58  YGFADKNEKKLFDSLIKLNGVGPKVALAICSTYTPQTFMDIIANHDINALKKIPGIGPKS 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ E+                   + +            A+SAL +LG+ ++    A
Sbjct: 118 AKRILMEM------------------GEFEVVFEEQNPVFNQALSALESLGFNKNDIVKA 159

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +           + I+LAL+ +S
Sbjct: 160 LNGIKSDN-----LEETIKLALKKLS 180


>gi|167745589|ref|ZP_02417716.1| hypothetical protein ANACAC_00280 [Anaerostipes caccae DSM 14662]
 gi|167654901|gb|EDR99030.1| hypothetical protein ANACAC_00280 [Anaerostipes caccae DSM 14662]
          Length = 187

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 50/193 (25%), Positives = 88/193 (45%), Gaps = 8/193 (4%)

Query: 13  YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWF 72
                +++  G+ Y I  P       G IG    ++   H+R+D I LFGF +  + + F
Sbjct: 2   TPGGAVVENNGIGYDIMMPAG-QEFPGGIGQEVRIYTHMHVREDDISLFGFRTKEELEAF 60

Query: 73  MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132
            LL  V G+G +V + VLS ++  EL  +++  +SK I++ PG+  K A +++ EL+ K 
Sbjct: 61  ELLIGVSGIGPKVGLSVLSTLSVYELKIAVMSDDSKTISKTPGLGPKGAKKLILELRDKL 120

Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIA 192
                   + M       A      +        LV+LGY + +A  A+  V  +     
Sbjct: 121 DFEEFEQAEPMDFAGDLPAEDSVAVTA-----QGLVSLGYSRSEAMMAIKKV--ENAAEY 173

Query: 193 DDSQIIRLALRAI 205
              Q+++ AL  +
Sbjct: 174 SPEQLLKKALTKL 186


>gi|104774420|ref|YP_619400.1| Holliday junction DNA helicase RuvA [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|300811568|ref|ZP_07092052.1| Holliday junction DNA helicase RuvA [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|123251847|sp|Q1G940|RUVA_LACDA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|103423501|emb|CAI98403.1| Holliday junction DNA helicase RuvA [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|300497428|gb|EFK32466.1| Holliday junction DNA helicase RuvA [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 197

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 92/205 (44%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G I  +   YV+I+V G+ Y I  P        K GD   ++VE  +R++ + L
Sbjct: 1   MYEYFEGTITVVNPAYVVIEVAGIGYRILTPTPYAY---KDGDKARIYVEQVVRENGMTL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  D+  F  L  V G+G + A+ +++      L  +I       + + PGI  K 
Sbjct: 58  YGFKSQQDKVLFNKLNEVSGIGPKSALAIMAAEDNGALASAIESGEVSYLTRFPGIGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +L+GK  +  +        +  E   + S+     +A+ AL  LGY Q +    
Sbjct: 118 ASQIVLDLRGKMGNYVAE------NLFTEDEPVKSVFPALEDALLALGALGYSQKEVDR- 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +   LKK        + I+  L  +
Sbjct: 171 IKPKLKKLPE-MSADEYIKQGLGFL 194


>gi|303233139|ref|ZP_07319812.1| Holliday junction DNA helicase RuvA [Atopobium vaginae PB189-T1-4]
 gi|302480724|gb|EFL43811.1| Holliday junction DNA helicase RuvA [Atopobium vaginae PB189-T1-4]
          Length = 208

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 93/208 (44%), Gaps = 5/208 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQIR 59
           MI ++ G +  L   +V+IDV GV Y +       + L  + G    L     ++++ + 
Sbjct: 1   MIVQLSGTLVELTSSHVIIDVAGVGYELGISASCAAHLPAEKGSPLVLLTRMIVKENALE 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    +R  F  + S+ GVG ++A+ +LS  T ++L+     Q+   ++Q+ G+  K
Sbjct: 61  LYGFADAYERLMFDTIISISGVGPKLALAILSLYTPSQLLTIAQTQDVAAMSQVSGVGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQ-QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
            A R++ EL         +      +  + + A +        +A +AL ++G+   +  
Sbjct: 121 KAQRLLLELADMCARTGELQGCVSAAAPSAKAASVEQRGDPMFDARAALASMGFTAVEIE 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
            A+               ++  ALR+++
Sbjct: 181 RALEGCSTDN---QTAESLVAQALRSLA 205


>gi|297243469|ref|ZP_06927401.1| holliday junction ATP-dependent DNA helicase ruvA [Gardnerella
           vaginalis AMD]
 gi|296888514|gb|EFH27254.1| holliday junction ATP-dependent DNA helicase ruvA [Gardnerella
           vaginalis AMD]
          Length = 209

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 60/210 (28%), Positives = 102/210 (48%), Gaps = 10/210 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  +     LI V GV Y  Y P + LS L + G    ++    + QD + L
Sbjct: 1   MIGMLVGQVASIDARSALIVVSGVGYETYMPSQDLSSLHE-GQEVRVYTSLQVSQDALTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +   ++ F+ +Q V G+G +VA+ +LS +    L+++I   +   ++  PG+  K 
Sbjct: 60  YGFTTQAAKRMFLQVQKVSGIGPKVALSMLSTLNVDRLLQAISEGDVTSLSSAPGLGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELKG   SL   +  D S  + +        S     I  L++LG+ Q  A  A
Sbjct: 120 AQKIILELKG---SLDPSILADSSNDSTQSNKQIVDSSV-QCVIEGLISLGWRQVDAQRA 175

Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205
           V  V  +       + AD   ++R+AL ++
Sbjct: 176 VEQVCAENNISTPISDADLPNVLRMALASL 205


>gi|224541319|ref|ZP_03681858.1| hypothetical protein CATMIT_00479 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525756|gb|EEF94861.1| hypothetical protein CATMIT_00479 [Catenibacterium mitsuokai DSM
           15897]
          Length = 204

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 95/205 (46%), Gaps = 21/205 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG I GLY D+++ID  G+ Y ++      +   K GD  T+++   +++D + L
Sbjct: 19  MYSYIKGIIAGLYSDHIVIDNHGIGYEVHVS-NPYNF--KKGDDATVYIYQQVKEDDLTL 75

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +++ F  L  V+G+G + A+G+L+      ++++I  +N   + +IPGI  K 
Sbjct: 76  FGFKKKEEKELFQKLILVKGIGCKTAIGILATGEIDAIIDAIEGKNIAYLKKIPGIGPKA 135

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +L GK                  +A           A   L+ LGY Q     A
Sbjct: 136 AQQIILDLHGKFDK---------------RAMKPLGSPDYEEATEVLIALGYKQSDVEKA 180

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +  +     D +  ++ AL  +
Sbjct: 181 MKVLSSEN---LDTNGYVKRALALL 202


>gi|169829378|ref|YP_001699536.1| Holliday junction ATP-dependent DNA helicase ruvA [Lysinibacillus
           sphaericus C3-41]
 gi|229560099|sp|B1HVA4|RUVA_LYSSC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|168993866|gb|ACA41406.1| Holliday junction ATP-dependent DNA helicase ruvA [Lysinibacillus
           sphaericus C3-41]
          Length = 206

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 88/197 (44%), Gaps = 3/197 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +  +Y++++ +G+ + +  P         +     ++V  H+R+D   L
Sbjct: 1   MYDYLKGLITRITPEYIVLEQKGIGWQLNTPNPFAFRTSAMEQQ--IYVHLHVREDAQVL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +   R+ F  L  V G+G + A+ +L+     +++ +I  ++   + + PG+  K 
Sbjct: 59  YGFPNLDQRELFRKLILVSGIGPKGALAILATGNPQQVISAIEREDETFLVKFPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +LKGK  SL   ++   +        +         AI AL  LGY + +    
Sbjct: 119 ARQMILDLKGKLGSLLETIELPSTEDELPLFGVHPYKHELEEAILALAALGYSEKELEK- 177

Query: 181 VVSVLKKEKNIADDSQI 197
           +  +L+    +      
Sbjct: 178 IRPLLEDNDKLETTDAY 194


>gi|325689191|gb|EGD31198.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK115]
          Length = 218

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 93/206 (45%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG I  +   Y++++V  + YI++      +  G++     ++V   +R+D   L
Sbjct: 23  MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGQLHQEAKVYVHQVVREDAELL 81

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 82  YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +      +        +             A+ A++ LGY   +    
Sbjct: 142 AQQMVLDLEGKVVVADGPAES-------KAPVQTVDNQELEEAMEAMLALGYKAAE---- 190

Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205
           +  + K  +   D     I+ AL+ +
Sbjct: 191 LKKIKKFFEGTTDTAENYIKSALKML 216


>gi|227432395|ref|ZP_03914385.1| crossover junction endoribonuclease subunit A [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|227351834|gb|EEJ42070.1| crossover junction endoribonuclease subunit A [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 196

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 92/206 (44%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           M   I G I  +   Y++I    GV Y +Y          +      ++V+  +R++ I 
Sbjct: 1   MYEYINGLITNITPSYIVIASRSGVGYRLY-SANPYRF--EENVESHVYVQQIVRENDIS 57

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF+   ++  F  L +V G+G + A+ +L+   A  L+ ++   N   + Q PG+  K
Sbjct: 58  LYGFIDADEKALFNKLLNVSGIGPKSALAILANGDAEGLISAVENDNVAYLTQFPGVGKK 117

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +I+ +LKGK   L+S      S  N              +A+ AL+ LGY       
Sbjct: 118 TAQQIVLDLKGKLDELASKTGMVDSSSN------PEQSQDLDDALEALLALGYTAKDV-K 170

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
           AV  ++ +  +  D    IR AL+ +
Sbjct: 171 AVAQIIGRNSDTTDG--YIRSALKLL 194


>gi|260102901|ref|ZP_05753138.1| crossover junction endoribonuclease subunit A [Lactobacillus
           helveticus DSM 20075]
 gi|260083290|gb|EEW67410.1| crossover junction endoribonuclease subunit A [Lactobacillus
           helveticus DSM 20075]
          Length = 196

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 53/193 (27%), Positives = 96/193 (49%), Gaps = 10/193 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G +  +   Y+++DV GV Y +Y P          GD   +F+E  +R   I L
Sbjct: 1   MYEYFEGIVTVITPSYIVVDVNGVGYKVYSPTPFAYQ---KGDKAKIFIEQVVRDTGITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S+ D++ F+ L SV G+G + A+ +++   A  L E+I     K + + PG+  K 
Sbjct: 58  YGFQSEDDKELFLKLLSVSGIGPKSALAIMAAEDANSLAEAIEQGEVKYLTRFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK           ++ ++++     ++P    +A+ AL+ LGY Q +    
Sbjct: 118 ASQIVLDLKGKLRDY-------VARLDRQDEEQGNIPPALNDALLALIALGYTQKELDRI 170

Query: 181 VVSVLKKEKNIAD 193
              + +   + AD
Sbjct: 171 TPKLEEVNADTAD 183


>gi|327463456|gb|EGF09775.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK1057]
          Length = 218

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 93/206 (45%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG I  +   Y++++V  + YI++      +  G +     ++V   +R+D   L
Sbjct: 23  MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGHLHQEAKVYVHQVVREDAELL 81

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 82  YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +      +  +           +       A+ A++ LGY   +    
Sbjct: 142 AQQMVLDLEGKVVVADGPAESKVPVQ-------TADNQELEEAMEAMLALGYKAAE---- 190

Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205
           +  + K  +   D     I+ AL+ +
Sbjct: 191 LKKIKKFFEGTTDTAENYIKSALKML 216


>gi|324992648|gb|EGC24569.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK405]
 gi|324995823|gb|EGC27734.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK678]
 gi|327460051|gb|EGF06390.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK1]
 gi|327488641|gb|EGF20441.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK1058]
          Length = 218

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 93/206 (45%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG I  +   Y++++V  + YI++      +  G +     ++V   +R+D   L
Sbjct: 23  MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGHLHQEAKVYVHQVVREDAELL 81

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 82  YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK ++     +        +             A+ A++ LGY   +    
Sbjct: 142 AQQMVLDLEGKVVAADGPSES-------KAPVQTMDNQELEEAMEAMLALGYKAAE---- 190

Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205
           +  + K  +   D     I+ AL+ +
Sbjct: 191 LKKIKKFFEGTTDTAENYIKSALKML 216


>gi|227504981|ref|ZP_03935030.1| Holliday junction DNA helicase motor protein [Corynebacterium
           striatum ATCC 6940]
 gi|227198431|gb|EEI78479.1| Holliday junction DNA helicase motor protein [Corynebacterium
           striatum ATCC 6940]
          Length = 194

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 52/196 (26%), Positives = 99/196 (50%), Gaps = 7/196 (3%)

Query: 10  EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69
             +  D+ +I+  GV Y       TL  L + GD  T+     +++D + L+GF +D DR
Sbjct: 2   LSISLDHAVIECAGVGYKFLATPVTLGTL-RRGDEATVLTSMVVKEDSMTLYGFSNDEDR 60

Query: 70  QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129
             F +LQ+V G+G ++A+  LS +  ++L ++I   ++K +  IPG+  ++A R+  EL+
Sbjct: 61  DMFHVLQTVSGLGPKLALAALSVMGPSQLAQAISSGDAKTLQTIPGVGKRMAERLALELR 120

Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189
            K  + +   Q       +E +   +        + ALV LG+    A   V  ++ +E 
Sbjct: 121 DKVSAFAPQAQP-----GQEASAAVAHGPVVDQVVEALVGLGFTDKAARPVVEGIVAEE- 174

Query: 190 NIADDSQIIRLALRAI 205
           + A+ + ++R AL  +
Sbjct: 175 SAAETAVVLRGALAQL 190


>gi|298252762|ref|ZP_06976556.1| Holliday junction ATP-dependent DNA helicase ruvA [Gardnerella
           vaginalis 5-1]
 gi|297533126|gb|EFH72010.1| Holliday junction ATP-dependent DNA helicase ruvA [Gardnerella
           vaginalis 5-1]
          Length = 209

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 62/210 (29%), Positives = 103/210 (49%), Gaps = 10/210 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  +     LI V GV Y  Y P + LS L + G    ++    + QD + L
Sbjct: 1   MIGMLVGQVASIDARSALIVVSGVGYETYMPSQDLSSLHE-GQEVRVYTSLQVSQDALTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +   ++ F+ +Q V G+G +VA+ +LS +    L+++I   +   ++  PG+  K 
Sbjct: 60  YGFTTQAAKRMFLQVQKVSGIGPKVALSMLSTLNVDRLLQAISEGDVTSLSSAPGLGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELKG   SL S +  D S  + +        S     I  LV+LG+ Q  A  A
Sbjct: 120 AQKIILELKG---SLDSSILADSSNDSTQSNKQIVDSSV-QCVIEGLVSLGWRQVDAQRA 175

Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205
           V  V  +       + AD   ++R+AL ++
Sbjct: 176 VEQVCAENNISIPISDADLPNVLRMALASL 205


>gi|58336747|ref|YP_193332.1| Holliday junction DNA helicase RuvA [Lactobacillus acidophilus
           NCFM]
 gi|227903308|ref|ZP_04021113.1| helicase Holliday junction [Lactobacillus acidophilus ATCC 4796]
 gi|75358012|sp|Q5FLX3|RUVA_LACAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|58254064|gb|AAV42301.1| helicase Holliday junction [Lactobacillus acidophilus NCFM]
 gi|227868937|gb|EEJ76358.1| helicase Holliday junction [Lactobacillus acidophilus ATCC 4796]
          Length = 195

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 50/193 (25%), Positives = 90/193 (46%), Gaps = 11/193 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G I  +   YV++DV G+ Y ++ P          G    +++E  +R   I L
Sbjct: 1   MYEYFEGIISEVTPSYVVVDVNGIGYKVFSPTPFAYKQ---GQKAKVYIEQIVRDTGITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    D+  F+ L SV G+G + AM +++   +  L E+I     K + + PG+  K 
Sbjct: 58  YGFQDQDDKGLFLKLLSVSGIGPKSAMAIMAAEDSNSLAEAIEQGEVKYLTRFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK     + + +  +           +     +A+ AL+ LGY Q +    
Sbjct: 118 ASQIVLDLKGKLGDYVARLDKPENGE--------EISPALNDALLALIALGYTQKEVDRI 169

Query: 181 VVSVLKKEKNIAD 193
              +++ E + AD
Sbjct: 170 TPKLVEIEADTAD 182


>gi|20807635|ref|NP_622806.1| Holliday junction resolvasome DNA-binding subunit
           [Thermoanaerobacter tengcongensis MB4]
 gi|22001976|sp|Q8RAN3|RUVA_THETN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|20516178|gb|AAM24410.1| Holliday junction resolvasome DNA-binding subunit
           [Thermoanaerobacter tengcongensis MB4]
          Length = 187

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 97/206 (47%), Gaps = 20/206 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G IE +  D+V+ID+ G+   I+ P  T+  L   G+   L+   ++R+D  ++
Sbjct: 1   MIEYIRGIIEDIGPDHVIIDLMGIGIKIFVPFSTMKELPPKGNITKLYTYLYVREDGFQI 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    + + F  L SV GVG + A+ +LS +     ++++   + K++   PGI  K 
Sbjct: 61  FGFKRKEELELFEKLLSVSGVGPKGALSILSVVPIESFIKAVNSGDYKILTAAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K      V ++D       +A +                 GY + +A  A
Sbjct: 121 AERIILELKDKVPKEVVVPKEDSLLNEALEALLAL---------------GYTKSEAIYA 165

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  V     N     Q ++ AL+ ++
Sbjct: 166 LSDV-----NCESVEQAVKEALKKLA 186


>gi|293192652|ref|ZP_06609606.1| holliday junction DNA helicase RuvA [Actinomyces odontolyticus
           F0309]
 gi|292820159|gb|EFF79156.1| holliday junction DNA helicase RuvA [Actinomyces odontolyticus
           F0309]
          Length = 207

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 91/204 (44%), Gaps = 9/204 (4%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           I  ++G +  +  D++ I V G+ + ++      +         T+F    +R+D + L+
Sbjct: 8   ISILRGTVASVGLDHIDIVVGGIGFRVHVTPA-FAQGASRDQEMTVFTSMIVREDLMTLY 66

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF S  +R  F  L SV G+G ++A+  L+ +   +L  ++  Q+   + +IPG+  K A
Sbjct: 67  GFESADERDVFTKLLSVSGIGPKIALAALAVLRPDDLRRAVRDQDLSALQRIPGVGKKSA 126

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
            R+  E+  K           +       A   +  + A    +ALV LG+ + QA  A+
Sbjct: 127 QRMALEIGDKLG-----TPAALPGAQTAAAPAPTEDAVASEVSAALVGLGWSEAQAAKAI 181

Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205
             +     +    S ++R AL  +
Sbjct: 182 EKLA---GSGLGASDMLRAALVTL 202


>gi|254478024|ref|ZP_05091408.1| Holliday junction DNA helicase RuvA [Carboxydibrachium pacificum
           DSM 12653]
 gi|214036028|gb|EEB76718.1| Holliday junction DNA helicase RuvA [Carboxydibrachium pacificum
           DSM 12653]
          Length = 187

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 96/206 (46%), Gaps = 20/206 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G IE +  D+V+ID  G+   I+ P  T+  L   G+   L+   ++R+D  ++
Sbjct: 1   MIEYIRGIIEDIGPDHVIIDFMGIGIKIFVPFSTMKELPPKGNITKLYTYLYVREDGFQI 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    + + F  L SV GVG + A+ +LS +     ++++   + K++   PGI  K 
Sbjct: 61  FGFKRKEELELFEKLLSVSGVGPKGALSILSVVPIESFIKAVNSGDYKILTAAPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK K      V ++D       +A +                 GY + +A  A
Sbjct: 121 AERIILELKDKVPKEVVVPKEDSLLNEALEALLAL---------------GYTKSEAIYA 165

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  V     N     Q ++ AL+ ++
Sbjct: 166 LSDV-----NCESVEQAVKEALKKLA 186


>gi|332365447|gb|EGJ43208.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK355]
          Length = 218

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 91/205 (44%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG I  +   Y++++V  + YI++      +  G +     ++V   +R+D   L
Sbjct: 23  MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGYLHQEAKVYVHQVVREDAELL 81

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 82  YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK ++     +        +             A+ A++ LGY   +    
Sbjct: 142 AQQMVLDLEGKVVAADGPSES-------KAPIQTVDNQELEEAMEAMLALGYKAAELKK- 193

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  V   E         I+ AL+ +
Sbjct: 194 IKKVF--EGTTDTAENYIKSALKML 216


>gi|209524253|ref|ZP_03272803.1| Holliday junction DNA helicase RuvA [Arthrospira maxima CS-328]
 gi|209495344|gb|EDZ95649.1| Holliday junction DNA helicase RuvA [Arthrospira maxima CS-328]
          Length = 206

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 54/212 (25%), Positives = 94/212 (44%), Gaps = 13/212 (6%)

Query: 1   MIGKIKGNIEGLYED-----YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55
           MIG + G + G+Y+      ++ +DV GV Y +    R  +   KIG+   +F   H+R 
Sbjct: 1   MIGYLNGTVAGIYKKTGNRVFLWLDVNGVGYELQILPRMQNLDAKIGENLQVFTHLHIRD 60

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           D + L+GF S  +R  F  L SV G+G ++A+ +L  +   +LV++I+  N+ ++ + PG
Sbjct: 61  DLMVLYGFSSMAERDLFRQLVSVSGIGMQLAIALLDTLALPDLVQAIVGGNTGILTKTPG 120

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           +  K A RI  ELK K               +   A              +L+ LGY   
Sbjct: 121 VGKKTAERITLELKTKLSEWRKQAGLPTVSTSNLSAE------IQEEVEISLLALGYTTS 174

Query: 176 QATTAVVSVLK--KEKNIADDSQIIRLALRAI 205
           +   A+ ++               I+ A+  +
Sbjct: 175 EVMQALKAITSHPNLSENNSAEDWIKYAISIL 206


>gi|169824513|ref|YP_001692124.1| holliday junction DNA helicase [Finegoldia magna ATCC 29328]
 gi|302380570|ref|ZP_07269035.1| Holliday junction DNA helicase RuvA [Finegoldia magna
           ACS-171-V-Col3]
 gi|303233766|ref|ZP_07320420.1| Holliday junction DNA helicase RuvA [Finegoldia magna BVS033A4]
 gi|229560032|sp|B0S1J4|RUVA_FINM2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|167831318|dbj|BAG08234.1| holliday junction DNA helicase [Finegoldia magna ATCC 29328]
 gi|302311513|gb|EFK93529.1| Holliday junction DNA helicase RuvA [Finegoldia magna
           ACS-171-V-Col3]
 gi|302495200|gb|EFL54952.1| Holliday junction DNA helicase RuvA [Finegoldia magna BVS033A4]
          Length = 198

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 93/205 (45%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G I  ++E+Y++++   + Y I+             D   ++ E   R+D   L
Sbjct: 1   MYSYIIGVITEVHENYIVLENNNIGYKIFITD-FFRDNVSAFDEYKVYTEFVEREDASIL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R+ F LL  V  +G + AM +LS +T  E   +II  + K++ Q PG+  K 
Sbjct: 60  YGFSSQKERELFNLLTDVTSIGPKYAMNILSTMTVDECKTAIITDDIKLLTQAPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ ELK K          D     K         + +  A  AL+ LGY ++     
Sbjct: 120 ASRIILELKEKIEK-------DFVPSEKPVNKEVKRSNDSEFAREALLQLGYFKNDVDAF 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +    + +      I++ A++++
Sbjct: 173 IEN---TDISGLSIEDIMKKAMKSL 194


>gi|328944741|gb|EGG38902.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK1087]
          Length = 218

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 92/206 (44%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG I  +   Y++++V  + YI++      +  G +     ++V   +R+D   L
Sbjct: 23  MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGHLHQEAKVYVHQVVREDAELL 81

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 82  YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +      +        +             A+ A++ LGY   +    
Sbjct: 142 AQQMVLDLEGKVVVADGPAES-------KAPVQTVDNQELEEAMEAMLALGYKAAE---- 190

Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205
           +  + K  +   D     I+ AL+ +
Sbjct: 191 LKKIKKFFEGTTDTAENYIKSALKML 216


>gi|306822725|ref|ZP_07456103.1| crossover junction ATP-dependent DNA helicase RuvA [Bifidobacterium
           dentium ATCC 27679]
 gi|304554270|gb|EFM42179.1| crossover junction ATP-dependent DNA helicase RuvA [Bifidobacterium
           dentium ATCC 27679]
          Length = 205

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 99/210 (47%), Gaps = 14/210 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +E +     LI+V GV Y I  P   L+ +   G    ++   ++ QD I L
Sbjct: 1   MIGMLHGRVESVDMSSALIEVGGVGYEIRMPSADLASMHA-GQEVKVYTSLNVSQDAITL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+   ++ F+ LQ V G+G +VA+ +LS +    L  ++   ++  +A+ PG+  K 
Sbjct: 60  FGFLTPASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLAHAVADGDATALAKAPGLGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELKG            +              + +   +  L++LG+ Q  A  A
Sbjct: 120 AQKIILELKGSIDLSQIETAASVIS--------RPEDTGSEQVVEGLISLGWRQQDALHA 171

Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205
           V  V +        +  D  ++++LAL ++
Sbjct: 172 VQEVCRSNDIATPLSNEDVPRVLKLALTSL 201


>gi|295396081|ref|ZP_06806264.1| crossover junction ATP-dependent DNA helicase RuvA [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294971022|gb|EFG46914.1| crossover junction ATP-dependent DNA helicase RuvA [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 194

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 15/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  + + +   GV   ++        + + G    L  E  +R+D + L
Sbjct: 1   MIRYLEGTVHTVSANSLTVVTSGVGREVFVTPAVAGRV-RTGSEVALHTELIVREDALTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  + + F  L    GVG ++A+ +LS ++  ++  +I     KV+  +PG+  K+
Sbjct: 60  YGFDTPSELKLFSTLLGANGVGPKLALAILSVLSPDQVYGAISDNTPKVLTAVPGVGPKV 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A++++ +L+GK  + S+V        +                + ALV LG+ +  A  A
Sbjct: 120 AAKLIVDLQGKVPATSAVPSSGAGPAS-------------AEVVQALVGLGWKEATAIKA 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +V  +    A  + +++ ALR +
Sbjct: 167 VEAVAPEMGQ-ASVADMLKAALREL 190


>gi|260893478|ref|YP_003239575.1| Holliday junction DNA helicase RuvA [Ammonifex degensii KC4]
 gi|260865619|gb|ACX52725.1| Holliday junction DNA helicase RuvA [Ammonifex degensii KC4]
          Length = 193

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 94/205 (45%), Gaps = 21/205 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  ++G++        +I V G+   ++ P+     L   G    L+    +R+D+  +
Sbjct: 1   MLAFLRGSVLEKERGRAVILVGGMGLEVFLPLSLYERLPAKGGEVELYTCLLLREDRPEI 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R +F+ L  + GVG + A+ +LS  +  EL E+I  ++ + +  +PG+  K 
Sbjct: 61  YGFGDREERDFFLRLLKIGGVGPKTALALLSCFSVEELREAIRSEDLEKLTVVPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK                    +         A +A++AL+NLGY + +A  A
Sbjct: 121 ARRLLLELKE-------------------EKGAPVEGEAAADAVAALINLGYRRREAEEA 161

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V     +        ++++L+L  +
Sbjct: 162 VREAKARGAQG--IEELLKLSLAYL 184


>gi|260494643|ref|ZP_05814773.1| Holliday junction DNA helicase RuvA [Fusobacterium sp. 3_1_33]
 gi|260197805|gb|EEW95322.1| Holliday junction DNA helicase RuvA [Fusobacterium sp. 3_1_33]
          Length = 194

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 99/205 (48%), Gaps = 15/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +E    DY+ ID+ G+ Y +Y P+R    + ++G+    ++  H+++D  +L
Sbjct: 1   MFEYLYGTVEYKKMDYIAIDINGIGYRVYFPLREYEKI-EVGNKYKFYIYNHIKEDTYKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GFL + DR+ F LL  + G+G+ +A+ VLS  +  +++E I   +   + Q+P +  K 
Sbjct: 60  IGFLEEGDRKIFELLLKINGIGSSLALAVLSNFSYNKIIEIISKNDYTTLRQVPKLGEKK 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A  I+ +LKGK  +L+   ++ +S                 + + AL  LGY + +    
Sbjct: 120 AQIIILDLKGKLKNLTYTEEETVSV------------DMLEDLVLALEGLGYNKKEIGKT 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +       +     I+  L+ +
Sbjct: 168 LEKI--DLSKFSSLEDAIKGILKNM 190


>gi|154508894|ref|ZP_02044536.1| hypothetical protein ACTODO_01405 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798528|gb|EDN80948.1| hypothetical protein ACTODO_01405 [Actinomyces odontolyticus ATCC
           17982]
          Length = 207

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/204 (22%), Positives = 91/204 (44%), Gaps = 9/204 (4%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           I  ++G +  +  D++ I V G+ + ++      +         T+F    +R+D + L+
Sbjct: 8   ISILRGTVASVGLDHIDIVVGGIGFRVHVTPA-FAQGASRDQEMTVFTSMIVREDSMTLY 66

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF S  +R  F  + SV G+G ++A+  L+ +   +L  ++  Q+   + +IPG+  K A
Sbjct: 67  GFESADERDVFTKMLSVSGIGPKIALAALAVLRPDDLRRAVRDQDLSTLQRIPGVGKKSA 126

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
            R+  E+  K           +       A   +  + A    +ALV LG+ + QA  A+
Sbjct: 127 QRMALEIGDKLG-----TPAALPGAQTAAAPAPTEDAVASEVSAALVGLGWSEAQAAKAI 181

Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205
             +     +    S ++R AL  +
Sbjct: 182 EKLA---GSGLGASDMLRAALVTL 202


>gi|284051632|ref|ZP_06381842.1| Holliday junction DNA helicase RuvA [Arthrospira platensis str.
           Paraca]
 gi|291571635|dbj|BAI93907.1| Holliday junction DNA helicase RuvA [Arthrospira platensis NIES-39]
          Length = 206

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 51/212 (24%), Positives = 89/212 (41%), Gaps = 13/212 (6%)

Query: 1   MIGKIKGNIE---GLYEDYVLI--DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55
           MIG + G +        + V++  DV GV Y +    R  +   K G+   +F    +R 
Sbjct: 1   MIGYLNGTVAGIYKKTGNRVILYLDVNGVGYELQILPRMQNLDAKTGENLQVFTHLQVRD 60

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           D + L+GF S  +R  F  L SV G+G ++A+ +L  +   +LV++I+  N+ ++ + PG
Sbjct: 61  DLMVLYGFSSMAERDLFRQLVSVSGIGMQLAIALLDTLELPDLVQAIVGGNTGILTKTPG 120

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           +  K A RI  ELK K               +   A              +L+ LGY   
Sbjct: 121 VGKKTAERITLELKTKLSEWRKQAGLPTVSTSNLSAE------IQEEVEMSLLALGYTSS 174

Query: 176 QATTAVVSVLK--KEKNIADDSQIIRLALRAI 205
           +   A+ ++               I+ A+  +
Sbjct: 175 EVMQALTAITSHPNLAENNSAEDWIKYAISIL 206


>gi|283783300|ref|YP_003374054.1| Holliday junction DNA helicase RuvA [Gardnerella vaginalis 409-05]
 gi|283441415|gb|ADB13881.1| Holliday junction DNA helicase RuvA [Gardnerella vaginalis 409-05]
          Length = 209

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 62/210 (29%), Positives = 102/210 (48%), Gaps = 10/210 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  +     LI V GV Y  Y P + LS L + G    ++    + QD + L
Sbjct: 1   MIGMLVGQVASIDARSALIVVSGVGYETYMPSQDLSSLHE-GQEVRVYTSLQVSQDALTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +   ++ F+ +Q V G+G +VA+ +LS +    L+++I   +   ++  PG+  K 
Sbjct: 60  YGFTTQAAKRMFLQVQKVSGIGPKVALSMLSTLNVDCLLQAISEGDVTSLSSAPGLGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELKG   SL S +  D S  + +        S     I  LV+LG+ Q  A  A
Sbjct: 120 AQKIILELKG---SLDSSILADSSNDSTQSNKQIVDSSV-QCVIEGLVSLGWRQVDAQRA 175

Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205
           V  V          + AD   ++R+AL ++
Sbjct: 176 VEQVCADNNISTPISDADLPNVLRMALASL 205


>gi|116493020|ref|YP_804755.1| Holliday junction DNA helicase subunit RuvA [Pediococcus
           pentosaceus ATCC 25745]
 gi|122265516|sp|Q03EQ9|RUVA_PEDPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|116103170|gb|ABJ68313.1| Holliday junction DNA helicase subunit RuvA [Pediococcus
           pentosaceus ATCC 25745]
          Length = 195

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 87/205 (42%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +  +   Y+++DV GV +++       S   ++     +FV   + ++   L
Sbjct: 1   MYEYLDGVVVNVNPAYIVVDVNGVGFLVNV-ANPYSF--ELDAKQKVFVHQAVSENDQTL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    D++ F+ L  V+G+G + A+ +L+    T L+ +I   +   + + P I  K 
Sbjct: 58  YGFKKAEDKELFLNLLKVKGIGPKSALAILANDDHTGLINAINNDDVSYLKKFPKIGPKA 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK            + V        +       A+ AL+ LGY + +    
Sbjct: 118 AQQIILDLKGKV--------AVENEVGTLFDLSTTSNQALDEALEALIALGYSEKEVKKL 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +   E+      Q I   L+ +
Sbjct: 170 TKKL--SEQTDRTTDQYISSGLKLL 192


>gi|196232552|ref|ZP_03131404.1| Holliday junction DNA helicase RuvA [Chthoniobacter flavus
           Ellin428]
 gi|196223314|gb|EDY17832.1| Holliday junction DNA helicase RuvA [Chthoniobacter flavus
           Ellin428]
          Length = 201

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 97/206 (47%), Gaps = 7/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +      +V+++V GV Y +  P+ +   L  +G    +     +R+D   L
Sbjct: 1   MITFLEGTLAEALPTHVVVNVHGVGYHVQIPLSSYDKLPAVGASIKILTHLAIREDAHVL 60

Query: 61  FGFLSDLDRQWFMLLQS-VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +GF+++ +R  F LL + V G+G + A+ VLS  T T    +++  ++ ++A+  GI  K
Sbjct: 61  YGFMTNAERDLFRLLVTHVSGIGPKTALDVLSGTTVTNFKAAVVAGDAGLLAKTKGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ ELK K    ++                    +   +A+  L+ LGY Q  A  
Sbjct: 121 TAERIIVELKDKVGIAAAWEAASA------SHAPTPEEAKVTDAVLGLIALGYKQVDAHK 174

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
           AV  V +K         ++R AL+ +
Sbjct: 175 AVKQVQEKGGPAMTTEDLVRQALKIL 200


>gi|119509314|ref|ZP_01628464.1| Holliday junction DNA helicase motor protein [Nodularia spumigena
           CCY9414]
 gi|119466156|gb|EAW47043.1| Holliday junction DNA helicase motor protein [Nodularia spumigena
           CCY9414]
          Length = 213

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 55/213 (25%), Positives = 89/213 (41%), Gaps = 14/213 (6%)

Query: 1   MIGKIKGNIEGLYE-----DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55
           MI  +KG + G+         + ++V  + Y +  P R    L + G    +F    +R 
Sbjct: 1   MISYLKGIVAGIQTIGGGRMMLTLEVNNLGYDLQVPQRLAKQLPESGGVTQIFTHLQIRD 60

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           +   L+GF S  +R  F  L SV G+G   A+ +L  +   +LV++II  N++++ Q PG
Sbjct: 61  EVPFLYGFASPAERDLFRQLLSVSGIGTACAIALLDTLEVPDLVQAIIAANTQILIQAPG 120

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           +  K A RI  ELK K +                 A     P         L  LGY  D
Sbjct: 121 VGKKTAERICLELKTKLVEWR-------KSAGFFVATGGPAPGILEEVQMTLFALGYTAD 173

Query: 176 QATTAVVSVLKKEKNIAD--DSQIIRLALRAIS 206
           + + A+  V +      D      I+ A+  +S
Sbjct: 174 EVSHALHVVSEDIGLTKDAYVEDWIKQAIAHLS 206


>gi|167629898|ref|YP_001680397.1| holliday junction DNA helicase ruva [Heliobacterium modesticaldum
           Ice1]
 gi|167592638|gb|ABZ84386.1| holliday junction DNA helicase ruva [Heliobacterium modesticaldum
           Ice1]
          Length = 274

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 47/136 (34%), Positives = 81/136 (59%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G + GL +D +L+DV GV Y ++ P   L+ L ++G    +    + R+DQ+ L
Sbjct: 1   MIAFLRGRLVGLGDDCLLLDVSGVGYRVFVPATMLASLPQVGRDILIHTFYYAREDQVSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL++ +  +F LL  V GVG +V +G+LS  +  E+  +II ++   + +IPGI  K 
Sbjct: 61  YGFLTEEELAFFRLLLEVSGVGPKVGLGILSAYSVVEVQRAIIAEDVLALTRIPGIGRKT 120

Query: 121 ASRIMTELKGKAISLS 136
           A R++ EL+ K +   
Sbjct: 121 AQRLVIELRDKLLKQG 136



 Score = 53.9 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 22/49 (44%)

Query: 157 PSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
            S    A SAL  LGY  ++A  A+V         AD    I+ ALR +
Sbjct: 223 TSPRDEAFSALQVLGYTANEARDALVEAAALVPPDADVEAWIKGALRFL 271


>gi|187250915|ref|YP_001875397.1| Holliday junction resolvasome DNA binding subunit [Elusimicrobium
           minutum Pei191]
 gi|254766962|sp|B2KCD9|RUVA_ELUMP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|186971075|gb|ACC98060.1| Holliday junction resolvasome, DNA binding subunit [Elusimicrobium
           minutum Pei191]
          Length = 202

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 58/208 (27%), Positives = 93/208 (44%), Gaps = 11/208 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG +KG I  L ED VLI V GV Y + C    +S L +  +      E+    D   L
Sbjct: 1   MIGYLKGQILSLSEDSVLILVNGVGYEVNCAPVAVSALEEGQETALYIAESISPYDGTVL 60

Query: 61  FGFLSDLDRQ-WFMLLQSVQGVGARVAMGVLSR--ITATELVESIILQNSKVIAQIPGIS 117
           +GFL+  D+Q W +   S+   GA+ A+  L++   +  +   +I+ ++ K++  I G +
Sbjct: 61  YGFLTKEDKQLWAIFKTSIPNTGAKKALEYLNKALRSVADFHNAIVKKDPKILTGIFGFT 120

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            K A +++  L GK           ++     +  I     F    + AL  LGY   +A
Sbjct: 121 AKTAEKLIHSLDGKM--------DAVTIAGVPKIKIEGEAPFMSEVMMALTALGYSPMEA 172

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
             A+  + K          IIR ALR +
Sbjct: 173 RKAIDQLYKTGLANDSVENIIRAALRIL 200


>gi|319940111|ref|ZP_08014465.1| Holliday junction ATP-dependent DNA helicase ruvA [Streptococcus
           anginosus 1_2_62CV]
 gi|319810825|gb|EFW07152.1| Holliday junction ATP-dependent DNA helicase ruvA [Streptococcus
           anginosus 1_2_62CV]
          Length = 196

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 94/205 (45%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG +  +   Y++++V  + YI++      +  G++     +FV   +R+D   L
Sbjct: 1   MYEYFKGILSKITAKYIVVEVGQIGYILHV-ANPYAYSGQVNQEIQVFVHQVVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRTEDEKQLFLNLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK ++     +Q             S       A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVATGVAPKQ-------VAVAATSDNKELEEAMEAMLALGYKAAELKK- 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +    +   + A     I+ AL+ +
Sbjct: 172 IKKFFEGTNDTA--ENYIKSALKML 194


>gi|315221510|ref|ZP_07863430.1| Holliday junction DNA helicase RuvA [Streptococcus anginosus F0211]
 gi|315189344|gb|EFU23039.1| Holliday junction DNA helicase RuvA [Streptococcus anginosus F0211]
          Length = 196

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 95/206 (46%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG +  +   Y++++V  + YI++      +  G++     +FV   +R+D   L
Sbjct: 1   MYEYFKGILSKITAKYIVVEVGQIGYILHV-ANPYAYSGQVNQELQVFVHQVVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFRTEDEKQLFLNLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK ++     +Q             S       A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVATGVAPKQ-------VAVAATSDNQELEEAMEAMLALGYKAAE---- 168

Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205
           +  + K  +   D     I+ AL+ +
Sbjct: 169 LKKIKKFFEGTTDTAENYIKSALKML 194


>gi|317508678|ref|ZP_07966333.1| Holliday junction DNA helicase RuvA [Segniliparus rugosus ATCC
           BAA-974]
 gi|316252999|gb|EFV12414.1| Holliday junction DNA helicase RuvA [Segniliparus rugosus ATCC
           BAA-974]
          Length = 199

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 93/205 (45%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G    +  D+V+++  G+ Y +     T + +   GD   L     +R+D   L
Sbjct: 1   MIASVRGEAVEVGADHVVVECAGLGYHVVVLPST-AAMAARGDELRLVTSFIVREDAQTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F +L++V GVG ++AM VLS +   +L  +I   +   + ++PG+  ++
Sbjct: 60  YGFPDRETRDLFDVLRTVSGVGPKLAMAVLSVLEPAQLRRAIGEGDLAALTRVPGVGKRV 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+  ELK K         +  +                   +  LV LG+    A +A
Sbjct: 120 AERLALELKEKVGVGVGATGKPGAPEGS--------ALVRQQVVDGLVGLGFALKPAESA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             SVL ++++ A  +  +R AL  +
Sbjct: 172 ADSVLAEDQD-ASAAVALRGALAIL 195


>gi|259502857|ref|ZP_05745759.1| crossover junction endoribonuclease subunit A [Lactobacillus antri
           DSM 16041]
 gi|259169224|gb|EEW53719.1| crossover junction endoribonuclease subunit A [Lactobacillus antri
           DSM 16041]
          Length = 197

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 51/206 (24%), Positives = 88/206 (42%), Gaps = 10/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G I  +   Y+++DV GV Y +                  +FV   +R D I L
Sbjct: 1   MYEYLTGTISIVAPQYIVVDVHGVGYKLLV-ANPYRFHEDPATAVRVFVYQAVRDDDISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    ++Q FM L +V G+G + A+ +L+      LV++I   N   + + PGI  K 
Sbjct: 60  FGFSDQAEKQLFMQLINVSGIGPKSALAILANPDHQGLVDAIANNNISYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LK K  + +S    D    +       +    A+ A+      GY   +    
Sbjct: 120 ASQIVLDLKDKLAAATSGSLFDQQTASDPANPALADALAALKAL------GYKDREVKKI 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
              +  ++       + +R ALR ++
Sbjct: 174 GKQLGTQQ---QSTDEYLRQALRLLN 196


>gi|289449412|ref|YP_003475227.1| Holliday junction DNA helicase RuvA [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289183959|gb|ADC90384.1| Holliday junction DNA helicase RuvA [Clostridiales genomosp. BVAB3
           str. UPII9-5]
          Length = 206

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 52/207 (25%), Positives = 88/207 (42%), Gaps = 12/207 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK--IGDFCTLFVETHMRQDQI 58
           M   I G  + +    V+I+  G+ Y +  P      L     GD   +F   ++R+D  
Sbjct: 1   MYAYINGEYKYVDAGSVVIECNGIGYTLLMP-----KLPAWTAGDKVKVFTYLYVREDIF 55

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+GF S      F +L  V  +G ++A+ +L  IT  +   +I+  + K++  I G+  
Sbjct: 56  ELYGFASQEQLNLFKMLIGVNKIGPKLALQILGSITPEQFALAILRNDLKILTSIKGLGK 115

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNK--EQAHICSMPSFAINAISALVNLGYGQDQ 176
           K A R++ +L+ K     S   +  + +     Q     +       + AL  LGY    
Sbjct: 116 KNAERLVIDLRDKLKKAGSPSAKASTGLTSLETQEDTIDVADDFSAVVEALTLLGYDYKT 175

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALR 203
           +     +V   E    D +Q IRLALR
Sbjct: 176 SVKQAKAVFDPE---LDLNQNIRLALR 199


>gi|114798884|ref|YP_758880.1| Holliday junction DNA helicase RuvA [Hyphomonas neptunium ATCC
           15444]
 gi|114739058|gb|ABI77183.1| Holliday junction DNA helicase RuvA [Hyphomonas neptunium ATCC
           15444]
          Length = 207

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 67/207 (32%), Positives = 112/207 (54%), Gaps = 5/207 (2%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           IG++KG +  +  D+VLIDV GV Y+     R L+ L + GD  T  +ET + +  I LF
Sbjct: 3   IGRLKGEVAAIGLDHVLIDVNGVGYVALAGTRLLARL-QTGDAITAHIETRVTESSITLF 61

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
            F +D +R WF+ LQ V GV  + A+ +L  ++  +++++I L ++    +  GI  K+ 
Sbjct: 62  AFATDEERAWFVRLQDVPGVAGKSALAILDGLSPADIMDAIALGDAGAFTRAKGIGKKLG 121

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQA--HICSMPSFAINAISALVNLGYGQDQATT 179
            RI+TEL GKA  L    + +++ V    +     +       A+SALVNLGY Q +A  
Sbjct: 122 ERIVTELAGKAPPLGRFGKFEVAAVAGLASAQPASAATGARGEAVSALVNLGYSQSEAAR 181

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV +  K      +   +++ AL+ ++
Sbjct: 182 AVAAAAKNGAE--EVGALVKGALKELA 206


>gi|126733600|ref|ZP_01749347.1| Holliday junction DNA helicase RuvA, putative [Roseobacter sp.
           CCS2]
 gi|126716466|gb|EBA13330.1| Holliday junction DNA helicase RuvA, putative [Roseobacter sp.
           CCS2]
          Length = 219

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 66/217 (30%), Positives = 104/217 (47%), Gaps = 12/217 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGKI G +E    D+VLIDV+GV YI+Y   R ++ L   G+   LF +  +R+D ++L
Sbjct: 1   MIGKIAGRLEYRSTDHVLIDVRGVGYIVYVSERVMAGLTSNGEAVALFTDLLVREDNLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++W  LL SVQG+GA+ +M +L  + A  +  +I L +   +A+  G+  K 
Sbjct: 61  FGFTTLVEKEWHRLLMSVQGIGAKASMAILGTLGAEGVSRAIALGDWNAVAKAKGVGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALV-----------N 169
           A R+  ELK KA  + ++                        A                N
Sbjct: 121 AQRVTIELKDKAPGVMAMGGAVAEAQGDAVIEAEPTAPVQRAAAPKANAASAEALSALGN 180

Query: 170 LGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           LGY       + V+        AD S +IR AL+ ++
Sbjct: 181 LGYAPG-EAASAVAEAAGAAPDADTSALIRAALKLLA 216


>gi|159027980|emb|CAO87940.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 209

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 54/213 (25%), Positives = 98/213 (46%), Gaps = 13/213 (6%)

Query: 1   MIGKIKGNIEG--LYEDY---VLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMR 54
           MI  ++G         +    +++DV  + Y I  P R    +GK   D   +F    +R
Sbjct: 1   MINYLRGQAIEVIKTPNNRLILILDVNQIGYEIQIPSRLALDIGKDNNDSRQIFTHLLLR 60

Query: 55  QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114
           +DQ  L+GF +  +R  F  L SV GVGA++A+ ++  +   ELV +I+  N+K++++ P
Sbjct: 61  EDQPLLYGFGTAPERDLFRQLLSVNGVGAQLALALIDTLGIEELVVAIVTGNTKILSKTP 120

Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           G+ +K A RI  ELK K  +   + +   +        I        +    L+ LGY Q
Sbjct: 121 GVGLKTAERIALELKTKLAAWRQLKEATTTTTA-----ILPAAEILEDVQMTLLALGYSQ 175

Query: 175 DQATTAVVSVLKKEKNIADD--SQIIRLALRAI 205
           ++   A+  + +      +      I+ A+  +
Sbjct: 176 EEIDRAIAVLSQDALFSKNTQPEDWIKGAINWL 208


>gi|325686747|gb|EGD28773.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK72]
          Length = 218

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 92/206 (44%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG I  +   Y++++V  + YI++      +  G +     ++V   +R+D   L
Sbjct: 23  MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGHLHQEAKVYVHQVVREDAELL 81

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 82  YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +      +        +             A+ A++ LGY   +    
Sbjct: 142 AQQMVLDLEGKVVVADGPAES-------KAPVQIVDNQELEEAMEAMLALGYKAAE---- 190

Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205
           +  + K  +   D     I+ AL+ +
Sbjct: 191 LKKIKKFFEGTTDTAENYIKSALKML 216


>gi|313682066|ref|YP_004059804.1| holliday junction DNA helicase subunit ruva [Sulfuricurvum kujiense
           DSM 16994]
 gi|313154926|gb|ADR33604.1| Holliday junction DNA helicase subunit RuvA [Sulfuricurvum kujiense
           DSM 16994]
          Length = 187

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 21/205 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G IE      V ++V GV Y ++  + T S +G   +   L     +R+D  +L
Sbjct: 1   MIIGLDGIIEYKEPSSVHLNVNGVIYEVFISLHTYSSIGS--EKVKLHTHHVIREDAQQL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++  F  +  + G+G + A+ + S  T  +    I  ++   + ++PGI  K 
Sbjct: 59  YGFEQKSEKILFEGMLKINGIGPKAALAICSTFTPEQFAGIISSKDINALKKVPGIGPKS 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RIM EL G    L                   +  +    A  AL  LG+ ++Q   A
Sbjct: 119 AGRIMVELAGFDAVLLGSG--------------ITATTATTEASMALEALGFKKEQIGKA 164

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +         D + +++ AL+ +
Sbjct: 165 LSA-----SGATDTAALVKDALKQL 184


>gi|295425862|ref|ZP_06818542.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           amylolyticus DSM 11664]
 gi|295064465|gb|EFG55393.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           amylolyticus DSM 11664]
          Length = 197

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 48/194 (24%), Positives = 89/194 (45%), Gaps = 11/194 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ-DQIR 59
           M   + G I  +   Y+++DV GV Y ++ P          G    ++VE +    +   
Sbjct: 1   MFEYLDGTIAEISPSYIVVDVNGVGYKVFSPTPFAYHQ---GQKAKVYVEQNFSDNNGFT 57

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF     +  F+ L SV G+G + A+ +++   +  L E+I     K + + PG+  K
Sbjct: 58  LYGFQDKNAKGLFLKLLSVSGIGPKSALAIMAAEDSDSLAEAIEQGEVKYLTRFPGVGKK 117

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            AS+I+ +LKGK           ++ +++  A    +     +A+ AL+ LGY Q +   
Sbjct: 118 TASQIVLDLKGKLGDY-------VNRLDRTVADNEEISPELHDALLALIALGYTQKEVNR 170

Query: 180 AVVSVLKKEKNIAD 193
               + K + + AD
Sbjct: 171 ITPKLEKIDTDSAD 184


>gi|293395808|ref|ZP_06640090.1| crossover junction endoribonuclease subunit A [Serratia odorifera
           DSM 4582]
 gi|291421745|gb|EFE94992.1| crossover junction endoribonuclease subunit A [Serratia odorifera
           DSM 4582]
          Length = 127

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 64/119 (53%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++GNI       VL++  GV Y ++ P+     L ++G    +F    +R+D   L
Sbjct: 1   MIGRLRGNILEKQPPLVLLEANGVGYEVHMPMTCFYELPELGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +GF    +R  F  L  V GVG ++A+ +LS ++A + V ++  +    + ++PG+  K
Sbjct: 61  YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAVEREEITALVKLPGVGKK 119


>gi|108804162|ref|YP_644099.1| Holliday junction DNA helicase subunit RuvA [Rubrobacter
           xylanophilus DSM 9941]
 gi|123069128|sp|Q1AWE1|RUVA_RUBXD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|108765405|gb|ABG04287.1| Holliday junction DNA helicase subunit RuvA [Rubrobacter
           xylanophilus DSM 9941]
          Length = 196

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 96/205 (46%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +     + V++D  GV Y    P+ TL  L  +G+ C +     +R+D + L
Sbjct: 1   MIDRLRGQLVEKDPEGVVVDCGGVGYRAAAPLSTLRALPAVGEECVVHTRMVVREDAMLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L SV  VG R+A+ VLS +T  +++E+    +    A +PG+  K 
Sbjct: 61  FGFATREEREAFDALTSVSKVGPRLALAVLSAMTPGQMMEAAARGDVHRFAAVPGLGRKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+G+         +  +                + A  AL  LGY  ++A  A
Sbjct: 121 AERLVLELRGR---------ELAAAGGGGGVAAGEGDGPFMEAREALTGLGYSLEEAERA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  V           Q I+ ALR I
Sbjct: 172 LRDV----PPQETVEQYIKAALRKI 192


>gi|256847966|ref|ZP_05553410.1| Holliday junction DNA helicase RuvA [Lactobacillus coleohominis
           101-4-CHN]
 gi|256715026|gb|EEU30003.1| Holliday junction DNA helicase RuvA [Lactobacillus coleohominis
           101-4-CHN]
          Length = 200

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 93/206 (45%), Gaps = 6/206 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G I   + DY++I+V GV + +         L +  D   ++V   +R D I L
Sbjct: 1   MYEYLLGTITEAHPDYLVIEVNGVGFRVQVANPYSYPLNE--DATKIYVYQAVRDDAISL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +++ F  L +V G+G + A+ +L+      LVE+I   N   I + PGI  K 
Sbjct: 59  FGFHNAEEKRLFTKLLAVSGIGPKSALAILANPDHEGLVEAIANNNVSYITKFPGIGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ EL+ K  SL      D+    ++            +A++AL  LGY        
Sbjct: 119 ASRIIIELQDKVDSLLPTF--DLQPQVEQLPTNNQDNPELADALAALKALGYSAKDVKKV 176

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
             S+ ++        Q +R  L  +S
Sbjct: 177 ASSLKQE--GGLSTDQYLRKGLTLLS 200


>gi|152966998|ref|YP_001362782.1| Holliday junction DNA helicase RuvA [Kineococcus radiotolerans
           SRS30216]
 gi|151361515|gb|ABS04518.1| Holliday junction DNA helicase RuvA [Kineococcus radiotolerans
           SRS30216]
          Length = 209

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 50/210 (23%), Positives = 93/210 (44%), Gaps = 13/210 (6%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           I  ++G +  +  D  +++V GV  ++     TL+ L ++G    L     +R+D + LF
Sbjct: 6   IASVRGQVLAVRLDSAVVEVGGVGMLVLAAPATLAGL-RVGQEALLHTTLVVREDSLTLF 64

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF    +++ F ++Q+  GVG R+A+ +L+      +  ++  ++   + ++PGI  K A
Sbjct: 65  GFADADEKEVFEIVQTASGVGPRMALAMLAVHRPDGIRAAVAAEDHAALVRVPGIGKKTA 124

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
            RI  EL  +                   A + +  +     + ALV LGY    A   V
Sbjct: 125 QRICLELGDRL-------GPPSGTAAPVAAPLSAGDARREQVVEALVGLGYPLKHAGDVV 177

Query: 182 VSVLKKEK-----NIADDSQIIRLALRAIS 206
             V+         +  D +  +R ALR +S
Sbjct: 178 DVVVGATPDAGAADDLDVAATLRAALRHLS 207


>gi|315655417|ref|ZP_07908317.1| crossover junction ATP-dependent DNA helicase RuvA [Mobiluncus
           curtisii ATCC 51333]
 gi|315490357|gb|EFU79982.1| crossover junction ATP-dependent DNA helicase RuvA [Mobiluncus
           curtisii ATCC 51333]
          Length = 194

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 16/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +     D   + V G+         TL+ L   G   T+     +R+D + L
Sbjct: 1   MISVIKGEVVSKKLDRATVLVGGLGLEFLATPNTLAALV-PGTTATVQTYLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L  V+G+G ++ +  LS ++   L  ++   +   +  IPG+  K 
Sbjct: 60  YGFASPSERDTFATLMQVKGIGPKLGLAALSVLSPEALAAAVANSDVAALQGIPGVGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+  K   +S V     +      +            + AL NLGY Q  AT A
Sbjct: 120 AERMILEIGDKLGGVSGVAASTGATAGFNAST----------VVEALSNLGYNQAIATEA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +V   +   A     +R AL+ +
Sbjct: 170 VNAVSASDAPTA-----LREALKYL 189


>gi|257126622|ref|YP_003164736.1| Holliday junction DNA helicase RuvA [Leptotrichia buccalis
           C-1013-b]
 gi|257050561|gb|ACV39745.1| Holliday junction DNA helicase RuvA [Leptotrichia buccalis
           C-1013-b]
          Length = 207

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 106/207 (51%), Gaps = 4/207 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +     DYV +D+ G+ Y IY  ++T   +  I     L++ T++++D I L
Sbjct: 1   MFEYICGKLSVKKIDYVALDINGLAYKIYISLKTFEKMSNIESTEKLYIHTNVKEDNISL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F  L SV GVG ++A+ +LS     E+V+ I+    K+  ++PG+ +K 
Sbjct: 61  YGFKTQNERELFKALISVNGVGPKLAIAILSTFNTKEIVDIILENEPKIFIKVPGLGIKK 120

Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A +I+ +LK K   L  S ++ ++ + +N        +     +   AL +LGY     +
Sbjct: 121 AQKIILDLKDKVKKLEFSEIINENSNTLNGNNISSSEILLMKEDLKLALESLGYADTDVS 180

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
             + +   +   I + S+ I++ L+ I
Sbjct: 181 KWIKN--DELIKIKNISEAIKIILKRI 205


>gi|125719033|ref|YP_001036166.1| Holliday junction DNA helicase RuvA [Streptococcus sanguinis SK36]
 gi|166231448|sp|A3CR11|RUVA_STRSV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|125498950|gb|ABN45616.1| Holliday junction DNA helicase ruvA, putative [Streptococcus
           sanguinis SK36]
          Length = 196

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 94/206 (45%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG I  +   Y++++V  + YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGQLHQEAKVYVHQVVREDAELL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +          S    +     +       A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVV-------AAGSPAESKAPVQTADNQELEEAMEAMLALGYKAAE---- 168

Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205
           +  + K  +   D     I+ AL+ +
Sbjct: 169 LKKIKKFFEGTTDTAENYIKSALKML 194


>gi|327472197|gb|EGF17634.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK408]
          Length = 218

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 92/206 (44%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG I  +   Y++++V  + YI++      +    +     ++V   +R+D   L
Sbjct: 23  MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSSLVNQETQIYVHQVVREDAELL 81

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 82  YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +          S    +     +       A+ A++ LGY   +    
Sbjct: 142 AQQMVLDLEGKVV-------AAGSPAESKAPVQTADNQELEEAMEAMLALGYKAAE---- 190

Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205
           +  + K  +   D     I+ AL+ +
Sbjct: 191 LKKIKKFFEGTTDTAENYIKSALKML 216


>gi|325479262|gb|EGC82358.1| Holliday junction DNA helicase RuvA [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 195

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 101/205 (49%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G I  + ED  +I+   + YII+  + TL+ + +I +   ++    +R+D I L
Sbjct: 1   MISYIIGQIRAINEDNFVIENNSMGYIIFSSLTTLTNI-EINNEYKIYTSMQVREDDISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+S  + + F+ L SV  +G + A+G+LS ++  E+  +I+  +   +    GI  K 
Sbjct: 60  FGFISKDELEMFLHLTSVSTIGPKTALGILSSLSVNEIKNAILNNDINKLTVAKGIGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ EL  K   ++           ++   +  +      A  AL+NLGY ++     
Sbjct: 120 ASRIILELVDKVKKMN-------FVPIEKTEDVSVVNEDFDVAKEALLNLGYQKNDIDRV 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           ++ +   E       ++++ +L+ +
Sbjct: 173 LLELKDNE---LSLEELVKESLKRL 194


>gi|227894652|ref|ZP_04012457.1| helicase Holliday junction [Lactobacillus ultunensis DSM 16047]
 gi|227863547|gb|EEJ70968.1| helicase Holliday junction [Lactobacillus ultunensis DSM 16047]
          Length = 195

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 54/193 (27%), Positives = 90/193 (46%), Gaps = 11/193 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G I  +   YV++DV GV Y +Y P          G    +++E  +R   I L
Sbjct: 1   MYEYFEGVISVITPSYVVVDVNGVGYKVYSPTPFAYKQ---GQKAKVYIEQVVRDTGITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  D+  F+ L SV G+G + AM +++   +  L E+I     K + + PG+  K 
Sbjct: 58  YGFQSQDDKGLFLKLLSVSGIGPKSAMAIMAAEDSNSLAEAIEQGEVKYLTRFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK     + + +  S           +     +A+ AL+ LGY Q +    
Sbjct: 118 ASQIVLDLKGKLGDYVARLDRTDSGE--------EISPALNDALLALIALGYTQKEVDRI 169

Query: 181 VVSVLKKEKNIAD 193
              + K + + AD
Sbjct: 170 TPKLEKVDADTAD 182


>gi|298346872|ref|YP_003719559.1| Holliday junction DNA helicase motor protein [Mobiluncus curtisii
           ATCC 43063]
 gi|304389423|ref|ZP_07371386.1| crossover junction ATP-dependent DNA helicase RuvA [Mobiluncus
           curtisii subsp. curtisii ATCC 35241]
 gi|298236933|gb|ADI68065.1| Holliday junction DNA helicase motor protein [Mobiluncus curtisii
           ATCC 43063]
 gi|304327233|gb|EFL94468.1| crossover junction ATP-dependent DNA helicase RuvA [Mobiluncus
           curtisii subsp. curtisii ATCC 35241]
          Length = 194

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 16/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +     D   + V G+         TL+ L   G   T+     +R+D + L
Sbjct: 1   MISVIKGEVVSKKLDRATVLVGGLGLEFLATPNTLATLV-PGTTATVQTYLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L  V+G+G ++ +  LS ++   L  ++   +   +  IPG+  K 
Sbjct: 60  YGFASPSERDTFATLMQVKGIGPKLGLAALSVLSPEALAAAVANSDVAALQGIPGVGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+  K   +S V     +      +            + AL NLGY Q  AT A
Sbjct: 120 AERMILEIGDKLGGVSGVAASTGATAGFNAST----------VVEALSNLGYNQALATEA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +V   +   A     +R AL+ +
Sbjct: 170 VNAVSASDAPTA-----LREALKYL 189


>gi|315656670|ref|ZP_07909557.1| crossover junction ATP-dependent DNA helicase RuvA [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
 gi|315492625|gb|EFU82229.1| crossover junction ATP-dependent DNA helicase RuvA [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
          Length = 194

 Score =  127 bits (320), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 89/205 (43%), Gaps = 16/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +     D   + V G+         TL+ L   G   T+     +R+D + L
Sbjct: 1   MISVIKGEVVSKKLDRATVLVGGLGLEFLATPNTLAALV-PGTTATVQTYLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F  L  V+G+G ++ +  LS ++   L  +++  +   +  IPG+  K 
Sbjct: 60  YGFASPSERDTFATLMQVKGIGPKLGLAALSVLSPEALAAAVVNSDVAALQGIPGVGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+  K   +S V     +      +            + AL NLGY Q  AT A
Sbjct: 120 AERMILEIGDKLGGVSGVAASTGATAGFNAST----------VVEALSNLGYNQALATEA 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +V   +   A     +R AL+ +
Sbjct: 170 VNAVSASDAPTA-----LREALKYL 189


>gi|327467941|gb|EGF13431.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK330]
          Length = 196

 Score =  127 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 95/206 (46%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG I  +   Y++++V  + YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGRLHQEAKVYVHQVVREDAELL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ +++ F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFATEEEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK ++     +        +     +       A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVAADGPAES-------KAPIQTADNQELEEAMEAMLALGYKAAE---- 168

Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205
           +  + K  +   D     I+ AL+ +
Sbjct: 169 LKKIKKFFEGTTDTAENYIKSALKML 194


>gi|297588495|ref|ZP_06947138.1| crossover junction ATP-dependent DNA helicase RuvA [Finegoldia
           magna ATCC 53516]
 gi|297573868|gb|EFH92589.1| crossover junction ATP-dependent DNA helicase RuvA [Finegoldia
           magna ATCC 53516]
          Length = 198

 Score =  127 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 92/205 (44%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G I  ++E+Y++++   + Y ++             D   ++ E   R+D   L
Sbjct: 1   MYSYIIGVITEVHENYIVLENNKIGYKVFITD-FFRDNVSAFDEYKVYTEFVEREDASIL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +R  F LL  V  +G + AM +LS +T  E   +II  + K++ Q PG+  K 
Sbjct: 60  YGFSSQKERDLFNLLTDVTSIGPKYAMNILSTMTVDECKTAIITDDIKLLTQAPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ ELK K          D     K         S +  A  AL+ LGY ++     
Sbjct: 120 ASRIILELKEKIEK-------DFVPSEKPVTKEVKKSSDSEFAREALLQLGYFKNDVDAF 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + +    + +      I++ A++++
Sbjct: 173 IEN---TDISGLSIEDIMKKAMKSL 194


>gi|332360160|gb|EGJ37974.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK1056]
          Length = 196

 Score =  127 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 95/206 (46%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG +  +   Y++++V  + YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYFKGIVSKITAKYIVLEVNSIGYILHV-ANPYAYSGRLHQEAKVYVHQVVREDAELL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK ++   + +        +             A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVAADGLAES-------KAPVQTVDNQELEEAMEAMLALGYKATE---- 168

Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205
           +  + K  +   D     I+ AL+ +
Sbjct: 169 LKKIKKFFEGTTDTAENYIKSALKML 194


>gi|317124983|ref|YP_004099095.1| Holliday junction DNA helicase subunit RuvA [Intrasporangium calvum
           DSM 43043]
 gi|315589071|gb|ADU48368.1| Holliday junction DNA helicase subunit RuvA [Intrasporangium calvum
           DSM 43043]
          Length = 201

 Score =  127 bits (319), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 97/205 (47%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +     D V++ V GV  +++    T + L +IG    L     +R+D + L
Sbjct: 1   MIASLSGTVLKAGLDSVVVAVGGVGMLVHTTPATAAAL-RIGQPADLATTLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++  F  +Q+V GVG R+A+ VL+    T +  ++   +   + ++PGI  K 
Sbjct: 60  YGFATEEEKHVFETVQTVSGVGPRLALAVLAVHDPTSVRRALGSGDIAALTKVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ K  +L+           +          +      ALV LG+   QA  A
Sbjct: 120 AERLVLELRDKLGALAGSSDGASIGHQRMDGE-----PWREQVREALVGLGWTVRQADDA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  V  +  + A  S ++R ALR +
Sbjct: 175 LDRVAPQAADGASVSAMLRAALREL 199


>gi|319956495|ref|YP_004167758.1| holliday junction DNA helicase subunit ruva [Nitratifractor
           salsuginis DSM 16511]
 gi|319418899|gb|ADV46009.1| Holliday junction DNA helicase subunit RuvA [Nitratifractor
           salsuginis DSM 16511]
          Length = 187

 Score =  127 bits (319), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 89/205 (43%), Gaps = 21/205 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +E     ++ ++V G+ Y +   + T S      +   L+V   +R+D   L
Sbjct: 1   MIVGIEGKVEAREPTWLHLNVGGLIYEVNVSLNT-SNTVAGKEQVKLYVTQIIREDANLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +++ F  L  + GVG +VA  V S  T     + +  ++  ++ ++PGI  K 
Sbjct: 60  FGFADRNEKKMFDTLLKINGVGPKVAQAVCSTFTPESFAKIVAAKDVALLKRVPGIGPKA 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ EL    +                     S  +    A+ AL +LG+ ++    A
Sbjct: 120 ASRILVELADFIV--------------DGSTAEGSAAADHQEAVMALESLGFKKEAIRKA 165

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +           D + +++ AL+ +
Sbjct: 166 LA------GESGDTATLVKAALKKL 184


>gi|269123417|ref|YP_003305994.1| Holliday junction DNA helicase RuvA [Streptobacillus moniliformis
           DSM 12112]
 gi|268314743|gb|ACZ01117.1| Holliday junction DNA helicase RuvA [Streptobacillus moniliformis
           DSM 12112]
          Length = 200

 Score =  127 bits (319), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 61/202 (30%), Positives = 99/202 (49%), Gaps = 10/202 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G +     +YV+ID+ GV Y IY  I+T   L  IG+   L++ T +++D I  
Sbjct: 1   MYEYFEGILSVKNLNYVVIDINGVGYKIYTSIKTYDKLNSIGEKERLYIHTIVKEDDISF 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++L+R  F+   ++ G+GA+ A+ +LS     EL      +N K +A++PGI MK 
Sbjct: 61  FGFKNELERSIFLECIAINGIGAKKAIAILSNFEFEELAAIASSKNFKELAKVPGIGMKK 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L  K   L                 I  + +   N   AL +LGY +      
Sbjct: 121 AEKIMVDLSDKLEGLKITNSSS-------SQDIVELYNKKENLRLALESLGYEKVNINNI 173

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           +     KE N+    ++I++AL
Sbjct: 174 IEDKYIKELNM---QELIKMAL 192


>gi|258653556|ref|YP_003202712.1| Holliday junction DNA helicase RuvA [Nakamurella multipartita DSM
           44233]
 gi|258556781|gb|ACV79723.1| Holliday junction DNA helicase RuvA [Nakamurella multipartita DSM
           44233]
          Length = 207

 Score =  127 bits (319), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 47/178 (26%), Positives = 86/178 (48%), Gaps = 5/178 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  ++ D+ +I+V GV   +      L+ L + G+   L+    +R+D + L
Sbjct: 1   MISSVRGEVLAIHLDHAVIEVGGVGLAVRTTPAALAEL-RRGESARLWTTLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +   ++ F L+QSV GVG ++A+ +L+ +   EL  ++   ++  + + PGI  K 
Sbjct: 60  FGFTTTAGKELFELVQSVSGVGPKIALALLAVLDPDELRRALSAGDTATLCRAPGIGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           A R++ EL+ K   + S               +     +      ALV LG+   QA 
Sbjct: 120 AERLVLELRDKVGPVGSPAAGVAPVAGAASGSLA----WRPQVTDALVGLGFTAKQAE 173


>gi|87304141|ref|ZP_01086682.1| DNA recombination protein, RuvA [Synechococcus sp. WH 5701]
 gi|87281448|gb|EAQ73513.1| DNA recombination protein, RuvA [Synechococcus sp. WH 5701]
          Length = 197

 Score =  127 bits (319), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 78/189 (41%), Gaps = 8/189 (4%)

Query: 1   MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG ++G     +       VL+   GV Y +    R    L +     TL++    R+D
Sbjct: 1   MIGWLQGRHMECWTQGNRSGVLLVCAGVGYEVQLTSRHQKQL-QPDSELTLWIHQVQRED 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              LFGF    +R  F LL  V GVG +  + +L      ELV +I   + K + Q  GI
Sbjct: 60  GSSLFGFPCRQERDLFRLLIGVNGVGPQAGLALLHECKPQELVAAISGGDLKRLCQAQGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             + A R+  +L+    +   +  Q              +P    +  + L++LGY + +
Sbjct: 120 GKRTAERLAVDLRTPIAAFGGLDPQPSLVEG---LASEQIPEAGEDVEATLISLGYDELE 176

Query: 177 ATTAVVSVL 185
              A+ ++ 
Sbjct: 177 IRRAIRAIA 185


>gi|315037644|ref|YP_004031212.1| Holliday junction DNA helicase RuvA [Lactobacillus amylovorus GRL
           1112]
 gi|325956129|ref|YP_004286739.1| Holliday junction DNA helicase RuvA [Lactobacillus acidophilus
           30SC]
 gi|312275777|gb|ADQ58417.1| Holliday junction DNA helicase RuvA [Lactobacillus amylovorus GRL
           1112]
 gi|325332694|gb|ADZ06602.1| Holliday junction DNA helicase RuvA [Lactobacillus acidophilus
           30SC]
 gi|327182937|gb|AEA31384.1| Holliday junction DNA helicase RuvA [Lactobacillus amylovorus GRL
           1118]
          Length = 195

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 52/193 (26%), Positives = 90/193 (46%), Gaps = 11/193 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G I  +   Y+++DV GV Y +Y P          G    +++E  +R   I L
Sbjct: 1   MYEYFEGIISVITPSYIVVDVNGVGYKVYSPTPFAYTQ---GQKAKVYIEQVVRDTGITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  D+  F+ L SV G+G + AM +++   +  L E+I     K + + PG+  K 
Sbjct: 58  YGFQSQDDKGLFLKLLSVSGIGPKSAMAIMAAEDSNSLAEAIEQGEVKYLTRFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK          D       + +   +     +A+ AL+ LGY Q +    
Sbjct: 118 ASQIVLDLKGKL--------GDYVARLDRKDNDEEISPALNDALLALIALGYTQKEVDRI 169

Query: 181 VVSVLKKEKNIAD 193
              +++ + + AD
Sbjct: 170 TPKLIEVDADTAD 182


>gi|312870465|ref|ZP_07730585.1| Holliday junction DNA helicase RuvA [Lactobacillus oris PB013-T2-3]
 gi|311094022|gb|EFQ52346.1| Holliday junction DNA helicase RuvA [Lactobacillus oris PB013-T2-3]
          Length = 197

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 51/206 (24%), Positives = 92/206 (44%), Gaps = 10/206 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G I  +   Y+++DVQGV Y +                  +FV   +R D I L
Sbjct: 1   MYEYLTGTISIVAPQYIVVDVQGVGYKLLV-ANPYRFHEDSAKAVRVFVYQAVRDDDISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +++ FM L +V G+G + A+ +L+      LV++I   N   + + PGI  K 
Sbjct: 60  FGFSDQAEKRLFMQLINVSGIGPKSALAILANPDHQGLVDAIANNNIGYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LK K  + ++    D   V+       +    A+ A+      GY + +    
Sbjct: 120 ASQIVLDLKDKLAAATAGSLFDPQPVSATANPALADALAALKAL------GYKEREVKKI 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
              + +++       + +R ALR ++
Sbjct: 174 GKQLGEEQ---QSTDEYLRQALRLLN 196


>gi|313892063|ref|ZP_07825661.1| Holliday junction DNA helicase RuvA [Dialister microaerophilus UPII
           345-E]
 gi|329120927|ref|ZP_08249559.1| crossover junction ATP-dependent DNA helicase RuvA [Dialister
           micraerophilus DSM 19965]
 gi|313119515|gb|EFR42709.1| Holliday junction DNA helicase RuvA [Dialister microaerophilus UPII
           345-E]
 gi|327471386|gb|EGF16837.1| crossover junction ATP-dependent DNA helicase RuvA [Dialister
           micraerophilus DSM 19965]
          Length = 200

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 54/202 (26%), Positives = 96/202 (47%), Gaps = 10/202 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG IKG +    +    ++  G+ Y I+        L ++G+   L+    +R+D I+L
Sbjct: 1   MIGYIKGTVTTFEKQACFVETSGIGYRIFISDIDKEKL-RVGENIKLYTYMAVREDAIQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+       F++L SV  +G +VAMG+LS I       +I  ++  V+ ++PGI  K 
Sbjct: 60  YGFIEKESYDLFLILISVSKIGPKVAMGILSSIDINSFCNAIQKKSISVLTKLPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK K          ++  V  +     S       A+  L +LGY + +    
Sbjct: 120 AERLVLELKDKI------AVSNVENVESDTESSTSGTVPENEAVMILKSLGYQEYEIMPV 173

Query: 181 VVSVLKKEKNIADDSQIIRLAL 202
           + S+ K+ K+     +++R  L
Sbjct: 174 LKSIKKEFKDPM---ELVRAVL 192


>gi|152990842|ref|YP_001356564.1| Holliday junction DNA helicase RuvA [Nitratiruptor sp. SB155-2]
 gi|166230575|sp|A6Q3Z8|RUVA_NITSB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|151422703|dbj|BAF70207.1| holliday junction DNA helicase RuvA [Nitratiruptor sp. SB155-2]
          Length = 184

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 90/205 (43%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +      Y+ I+V GV Y ++  +   + + K      L     +R+D   L
Sbjct: 1   MIVGLVGEVLKKEPTYLHIEVGGVVYEVFISLNASAAIDK--KQIRLHTTHIIREDSESL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   +++ F  L  + GVG +VA+ + S     E V+ +  +N  ++ ++PGI  K 
Sbjct: 59  YGFVDINEKKMFDRLIKLNGVGPKVAIAICSTFKPQEFVQIVQQKNVAMLKKVPGIGPKS 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL                    + +      S    A  AL +LG+ ++Q   A
Sbjct: 119 AQRILVELGEF-----------------DISESNVTSSAFQEASMALQSLGFKKEQIQKA 161

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +     +E    D + +++ AL+ I
Sbjct: 162 L-----QECTATDTASLVKEALKKI 181


>gi|302344655|ref|YP_003809184.1| Holliday junction DNA helicase RuvA [Desulfarculus baarsii DSM
           2075]
 gi|301641268|gb|ADK86590.1| Holliday junction DNA helicase RuvA [Desulfarculus baarsii DSM
           2075]
          Length = 193

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 110/206 (53%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI +++G +     D+V++DV GV Y ++  +     L + G+  +L   T +R D I L
Sbjct: 1   MIARLRGQLAARRPDHVVVDVGGVGYRVFVSLGAFCRLPQSGE-ISLLTHTIVRDDAIHL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+++ + + F LL SV GVG ++A+ +LS +   EL  +I   ++  +A+ PG+  K 
Sbjct: 60  YGFINEQEWEAFRLLVSVAGVGPKLALAILSGLEVGELWAAIRAGDAARLAKTPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +L G+              V ++ A   +  + A +A SAL NLGY + +A  A
Sbjct: 120 AGRLVVDLAGRLP------------VGEQPAAAVAPGTAADDAQSALCNLGYPEAKAKKA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V   L    + A    ++RLAL+ ++
Sbjct: 168 VDKALAVAGDGAALEDLLRLALKELA 193


>gi|293375246|ref|ZP_06621530.1| Holliday junction DNA helicase RuvA [Turicibacter sanguinis PC909]
 gi|325840674|ref|ZP_08167125.1| Holliday junction DNA helicase RuvA [Turicibacter sp. HGF1]
 gi|292646144|gb|EFF64170.1| Holliday junction DNA helicase RuvA [Turicibacter sanguinis PC909]
 gi|325490238|gb|EGC92572.1| Holliday junction DNA helicase RuvA [Turicibacter sp. HGF1]
          Length = 195

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 46/204 (22%), Positives = 89/204 (43%), Gaps = 21/204 (10%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
              +KG +    +D+V+I+V G+ Y +Y          +  +   +F    + ++ + L+
Sbjct: 11  YAYLKGTVAYSAKDFVVIEVAGIGYKVY-TANPYEF--RKDEATQVFTHQVVSENDLSLY 67

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF +  +   F+ L S +G+G + A  +L+    + L  +I   ++K + + P I  K A
Sbjct: 68  GFKTLEEHDLFINLISARGIGPKTACAILAMKDMSGLRHAIENGDAKYLCKFPKIGPKTA 127

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
            +I+ +LKGK +                      + +    A+ AL  LGYG  + T  V
Sbjct: 128 QQIILDLKGKLV---------------VPDAAIFVNNSLSEALEALQALGYGDKELTK-V 171

Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205
            +  K     A   +II+  L+ +
Sbjct: 172 KNAFKD--TDASVDEIIKKGLQLL 193


>gi|58617428|ref|YP_196627.1| Holliday junction DNA helicase RUVA [Ehrlichia ruminantium str.
           Gardel]
 gi|75356743|sp|Q5FG40|RUVA_EHRRG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|58417040|emb|CAI28153.1| Holliday junction DNA helicase RUVA [Ehrlichia ruminantium str.
           Gardel]
          Length = 191

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 112/207 (54%), Gaps = 18/207 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ-IR 59
           MIG I GN+E + + Y++++V  + YIIY   + L    K+GD   L++ET++ +D   +
Sbjct: 1   MIGSITGNVEEIRDSYIILNVGNIGYIIYVSHKVLQT-CKVGDNIKLYIETYVNRDNITQ 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL+  ++ +F +L ++ G+  + A+ +LS+++  ++  +++  +     +  GI  K
Sbjct: 60  LYGFLNRQEQDYFKMLVTINGINYKTALSILSKLSPEQIFSAVVNNDKIAF-KGNGIGEK 118

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           +A RI+TEL+ K               NK             ++++AL++LGY + +A  
Sbjct: 119 LAGRIITELQYKI--------------NKMPIEETFSIIENDDSLAALISLGYEKLKAFN 164

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
            +  +  K  + A   ++IR AL+ +S
Sbjct: 165 VIQEIKSKTPD-ASTQEVIRKALQKLS 190


>gi|294790877|ref|ZP_06756035.1| holliday junction DNA helicase RuvA [Scardovia inopinata F0304]
 gi|294458774|gb|EFG27127.1| holliday junction DNA helicase RuvA [Scardovia inopinata F0304]
          Length = 209

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 98/210 (46%), Gaps = 10/210 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G+I  +  D ++IDV GV + +    R  + L   G    +     + +D + L
Sbjct: 1   MIASLEGDILSIEPDGIVIDVNGVGFSVRMSARDTAQLHA-GSHERIITLMTVSRDALSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+   ++ F+ LQ V G+G RVAM +LS ++A EL  +I   +   + + PG+  K 
Sbjct: 60  YGFLNPSSKKLFIQLQKVSGIGPRVAMAILSTLSAEELATAIRDNDVTALTRAPGLGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ EL G     +    Q+ +  +                I  LV+LG+ Q  A  A
Sbjct: 120 AQKIILELHGTIDFTNLDPDQEQAAGH----DTEKQDHNMRQVILGLVSLGWQQRDAFGA 175

Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205
               +K+       +  D  +++R AL  +
Sbjct: 176 TKEAMKQLSLGEPLDAQDVPRVLRTALSDL 205


>gi|325832047|ref|ZP_08165144.1| Holliday junction DNA helicase RuvA [Eggerthella sp. HGA1]
 gi|325486368|gb|EGC88820.1| Holliday junction DNA helicase RuvA [Eggerthella sp. HGA1]
          Length = 205

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 97/205 (47%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG + G       I+V GV Y +     +LS L + G    +     +R D + L
Sbjct: 1   MIAFLKGTLAGKTATTAYIEVNGVGYAVGMSQASLSKLPEAGAPVEVHTFLQVRDDALAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++  F  L  V GVG +VA+  LS  +   LV ++  Q+   + +IPG+  K 
Sbjct: 61  YGFLALEEKALFERLIGVGGVGPKVALAALSAFSPAGLVAAVQAQDVAAVQRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ ELKG          + ++ +    A   +  +       AL+++G+  ++A  A
Sbjct: 121 ASRIILELKG-------SFDEGLASLFDGAAPAAASAANLAGTREALLSMGFTSEEADVA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
               LK     A +  +++ AL+ +
Sbjct: 174 ----LKGAPEGASEGVLLQYALKRL 194


>gi|315658088|ref|ZP_07910960.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus
           lugdunensis M23590]
 gi|315496417|gb|EFU84740.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus
           lugdunensis M23590]
          Length = 203

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 102/205 (49%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  L+  +V+++ QG+ Y I  P  +           T++    +R+D   L
Sbjct: 2   MYAYIKGQLTQLFPTHVVVETQGIGYEIQTP-NSYRFQQFYYQEVTIYTSLIVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+++ +++ F+ L  V G+G + A+ +L+  T  E+  +I  +N   + + PGI  K 
Sbjct: 61  YGFINEEEKEMFLNLIKVTGIGPKSALAILATSTPNEVKRAIEDENDAYLTKFPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK     +    + S    + ++     ++   A+ AL  LGY + + +  
Sbjct: 121 ARQIILDLKGKVN--YTEASSNDSIHIDDVSNTSQKDNYIAEALLALEALGYSKREISKV 178

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             ++ ++   +    + +++ L+A+
Sbjct: 179 EKTLQQQV--VTSVDEAVKIGLQAL 201


>gi|225619866|ref|YP_002721123.1| Holliday junction DNA helicase RuvA [Brachyspira hyodysenteriae
           WA1]
 gi|225214685|gb|ACN83419.1| Holliday junction DNA helicase RuvA [Brachyspira hyodysenteriae
           WA1]
          Length = 192

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 48/206 (23%), Positives = 97/206 (47%), Gaps = 16/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I+G ++ + E  + +   GV Y I    +      K  D   L+ +   R+D + L
Sbjct: 1   MFAFIEGKVQIISEGVIALLCNGVGYEIIVSKK---LDVKNDDNIRLYTKLIHREDAMIL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++  F  L S  GVG ++AM VLS  +  +L+  +  ++  ++ ++ G+ +K 
Sbjct: 58  YGFLTREEKNMFTTLMSASGVGPKLAMEVLSTYSINDLMHILFNKDINLLKKVSGMGVKK 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ EL+ K   +   +   +                  + I AL++LG+  ++A  A
Sbjct: 118 AEKLLFELRDKIEKIDINISPSV-----------ISNDNESDVIKALISLGFSNNEAVKA 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + ++  + K+      +I  ALR +S
Sbjct: 167 LSAI--ENKDNMTTEDLISNALRNLS 190


>gi|294101862|ref|YP_003553720.1| Holliday junction DNA helicase RuvA [Aminobacterium colombiense DSM
           12261]
 gi|293616842|gb|ADE56996.1| Holliday junction DNA helicase RuvA [Aminobacterium colombiense DSM
           12261]
          Length = 201

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/208 (23%), Positives = 100/208 (48%), Gaps = 13/208 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  ++G +  + E+ V++DV G+ + I C    L  L +  +   L     + ++   L
Sbjct: 1   MLRSLEGKVLHIGEENVILDVNGLGFDILCSGSAL-RLCEDNETIRLTTYLQVSENGATL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S+ +R+ F+ L +V+GVG RV + VL  ++ T+++ S+   ++    Q+PG+  K 
Sbjct: 60  FGFSSEQEREVFIKLLTVKGVGGRVGLAVLRTLSPTQVIRSVATSDTDTFLQVPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+  ELK                + +                +AL +LG+ Q++  + 
Sbjct: 120 AERLCFELKRHLSE---------EMLAEFAEEEVPSILVKNTVAAALRSLGFTQNEVYSV 170

Query: 181 VVSVLKKEKNIADDSQ---IIRLALRAI 205
           +  + ++  +  D ++   +++ ALR +
Sbjct: 171 MNRLKREMGSEFDTTKEDILLKRALREL 198


>gi|325697267|gb|EGD39153.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           sanguinis SK160]
          Length = 196

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 95/206 (46%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG I  +   Y++++V  + YI++      +  G++     ++V   +R+D   L
Sbjct: 1   MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGQLHQEAKVYVHQVVREDTELL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK ++     +        +     +       A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVAADGPSES-------KAPVQTADNQELEEAMEAMLALGYKVAE---- 168

Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205
           +  + K  +   D     I+ AL+ +
Sbjct: 169 LKKIKKFFEGTTDTAENYIKSALKML 194


>gi|289550593|ref|YP_003471497.1| Holliday junction DNA helicase RuvA [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180125|gb|ADC87370.1| Holliday junction DNA helicase RuvA [Staphylococcus lugdunensis
           HKU09-01]
          Length = 202

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 101/205 (49%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  L+  +V+++ QG+ Y I  P  +           T++    +R+D   L
Sbjct: 1   MYAYIKGQLTQLFPTHVVVETQGIGYEIQTP-NSYRFQQFYNQAVTIYTSLIVREDAQLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+++ +++ F+ L  V G+G + A+ +L+  T  E+  +I  +N   + + PGI  K 
Sbjct: 60  YGFINEEEKEMFLNLIKVTGIGPKSALAILATSTPNEVKRAIEDENDAYLTKFPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK     +    + S    + +      ++   A+ AL  LGY + + +  
Sbjct: 120 ARQIILDLKGKVN--YTEASSNDSIHIDDISSTSQKDNYIAEALLALEALGYSKREISKV 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             ++ ++   +    + +++ L+++
Sbjct: 178 EKTLQQQV--VTSVDEAVKIGLQSL 200


>gi|169350138|ref|ZP_02867076.1| hypothetical protein CLOSPI_00880 [Clostridium spiroforme DSM 1552]
 gi|169292921|gb|EDS75054.1| hypothetical protein CLOSPI_00880 [Clostridium spiroforme DSM 1552]
          Length = 186

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 94/205 (45%), Gaps = 21/205 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G I  +  D+++++  G+ Y+IY            G    +++  ++++D + L
Sbjct: 1   MYSYIIGKIVEINVDHIVVENNGIGYLIYVS-NPYEF--TKGKEIKVYLYQYVKEDVLLL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +++ F+ L  V+G+G + A+G+L+      ++ +I   +   + +IPGI  K 
Sbjct: 58  YGFKTIEEKEMFLKLILVKGIGCKTAIGILATGDLERIISAIETNDVNYLKKIPGIGPKA 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +L+GK   +   ++                      A+  L+ LGY + +   A
Sbjct: 118 AKQIILDLQGKFNDVPITIKT---------------NDDLQEALEVLIALGYRKVEVEKA 162

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +  +     D +  ++ AL  +
Sbjct: 163 LKVLADEN---LDTNGYVKRALSLL 184


>gi|157150589|ref|YP_001451298.1| Holliday junction DNA helicase RuvA [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|189045776|sp|A8AZT8|RUVA_STRGC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|157075383|gb|ABV10066.1| Holliday junction DNA helicase RuvA [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 196

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 94/206 (45%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG I  +   Y++++V  + YI++      +  G +     ++V   +R+D   L
Sbjct: 1   MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGHLHQEAKVYVHQVVREDAELL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK ++   + +        +             A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVAADGLAES-------KAPVQTVDNQELEEAMEAMLALGYKATE---- 168

Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205
           +  + K  +   D     I+ AL+ +
Sbjct: 169 LKKIKKFFEGTTDTAENYIKSALKML 194


>gi|331668556|ref|ZP_08369404.1| holliday junction DNA helicase RuvA [Escherichia coli TA271]
 gi|331063750|gb|EGI35661.1| holliday junction DNA helicase RuvA [Escherichia coli TA271]
 gi|332756762|gb|EGJ87109.1| holliday junction DNA helicase RuvA [Shigella flexneri 4343-70]
          Length = 123

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 63/119 (52%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKK 119


>gi|327450649|gb|EGE97303.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL087PA3]
          Length = 194

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 50/200 (25%), Positives = 94/200 (47%), Gaps = 10/200 (5%)

Query: 9   IEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLD 68
           +      +V++D  GV   + CP  T +   +I    +L     +R++ + L+GF+   D
Sbjct: 2   VSAAGPTWVVLDNHGVGIKVLCPPATAAS-ARINQDMSLHTSLVVREESLTLYGFVEADD 60

Query: 69  RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
           R  F L+Q+  GVG ++A  ++S + A +L  +I  ++   + ++PGI  K A++++ EL
Sbjct: 61  RDAFELVQTASGVGPKLAAAIMSVLDAAQLATAITEEDDATLCRVPGIGRKGAAKMILEL 120

Query: 129 KGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV--LK 186
           K K  +L+          +        +  +       LV LG+    A  AV  V  LK
Sbjct: 121 KDKVAALTPRGASVSGAPH-------VVAPWREQVAEGLVGLGWSAKDAEKAVDKVAALK 173

Query: 187 KEKNIADDSQIIRLALRAIS 206
           +         ++R ALR+++
Sbjct: 174 EADPAMTIGNLMRAALRSLA 193


>gi|317488563|ref|ZP_07947108.1| Holliday junction DNA helicase RuvA [Eggerthella sp. 1_3_56FAA]
 gi|316912305|gb|EFV33869.1| Holliday junction DNA helicase RuvA [Eggerthella sp. 1_3_56FAA]
          Length = 197

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 98/205 (47%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +         I+V GV Y +     +LS L + G    +     +R D + L
Sbjct: 1   MIAFLKGVLAAKTATTAFIEVNGVGYAVGMSQASLSKLPEAGAAVEVHTFLQVRDDGLSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  ++  F  L  V GVG +VA+  LS  +   LV ++  Q+   + +IPG+  K 
Sbjct: 61  FGFLTLEEKALFERLIGVGGVGPKVALAALSAFSPAGLVAAVQAQDVAAVQRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ ELKG          + ++ +  E A   +  +       AL+++G+  ++A  A
Sbjct: 121 ASRIILELKG-------SFDEGLAGLFDEAAPAVASAANLAGTREALLSMGFTSEEADVA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
               LK     A +S +++ AL+ +
Sbjct: 174 ----LKGAPEGAAESVLLQYALKRL 194


>gi|296111820|ref|YP_003622202.1| Holliday junction DNA helicase RuvA [Leuconostoc kimchii IMSNU
           11154]
 gi|295833352|gb|ADG41233.1| Holliday junction DNA helicase RuvA [Leuconostoc kimchii IMSNU
           11154]
          Length = 196

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 98/206 (47%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           M   I G I  +Y  Y++I D  GV Y ++          +      ++VE  +R++ I 
Sbjct: 1   MYEYINGLITNIYPAYLVICDRSGVGYKLFA-ANPYRF--EQNVESHVYVEQIVRENDIA 57

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           ++GF+ + ++  F  L +V G+G + A+ +L+   AT LV ++   ++  + Q PG+  K
Sbjct: 58  MYGFIDENEKILFNKLLNVSGIGPKSALAILASDDATGLVNAVANDDASYLTQFPGVGKK 117

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +I+ +LKGK   L+      +S   +      +      +A+ AL +LGY   +   
Sbjct: 118 TAQQIVLDLKGKLDDLA------ISAGVQGPTREQNTNQALSDALEALESLGYSAKEVAK 171

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            +   L  +++  D    IR AL+ +
Sbjct: 172 -LEKTLASQQDTTDG--YIRSALKLL 194


>gi|314955639|gb|EFT00041.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL027PA1]
          Length = 194

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 50/200 (25%), Positives = 94/200 (47%), Gaps = 10/200 (5%)

Query: 9   IEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLD 68
           +      +V++D  GV   + CP  T +   +I    +L     +R++ + L+GF+   D
Sbjct: 2   VSAAGPTWVVLDNHGVGIKVLCPPATAAS-ARINQDMSLHTSLVVREESLTLYGFVEADD 60

Query: 69  RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
           R  F L+Q+  GVG ++A  ++S + A +L  +I  ++   + ++PGI  K A++++ EL
Sbjct: 61  RDVFELVQTASGVGPKLAAAIMSVLDAAQLATAITEEDDATLCRVPGIGRKGAAKMILEL 120

Query: 129 KGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV--LK 186
           K K  +L+          +        +  +       LV LG+    A  AV  V  LK
Sbjct: 121 KDKVAALTPRGASVSGATH-------VVAPWREQVAEGLVGLGWSAKDAEKAVDKVAALK 173

Query: 187 KEKNIADDSQIIRLALRAIS 206
           +         ++R ALR+++
Sbjct: 174 EADPAMTIGNLMRAALRSLA 193


>gi|118586981|ref|ZP_01544413.1| Holliday junction DNA helicase [Oenococcus oeni ATCC BAA-1163]
 gi|118432603|gb|EAV39337.1| Holliday junction DNA helicase [Oenococcus oeni ATCC BAA-1163]
          Length = 194

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 91/205 (44%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G I+ +   YV IDV G+ + ++ P           D  T+F E  +R ++I L
Sbjct: 1   MYDFLTGIIKTITAGYVGIDVNGIGFRVFTPNPYEYNQ---NDQTTIFTEQIVRDNEISL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L +V G+G + A+ +++      L+ ++     K + + PGI  K 
Sbjct: 58  YGFKTVEERNLFQKLLNVSGIGPKSALAIIAGGDRDGLIAAVENGKPKYLTKFPGIGNKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK    S  +            ++    +   +A++ALV LG+   +    
Sbjct: 118 AQQIVLDLKGKLGDFSKNIAP--------MKNLLENSAELDDALAALVALGFSSKEVNK- 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +   L     +      I+  L+ +
Sbjct: 169 INPKLASLGEL-TTDAYIQKGLKLL 192


>gi|323165015|gb|EFZ50805.1| holliday junction DNA helicase RuvA [Shigella sonnei 53G]
          Length = 123

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 63/119 (52%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G I       VLI+V GV Y ++ P+     L + G    +F    +R+D   L
Sbjct: 1   MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +GF +  +R  F  L    GVG ++A+ +LS ++A + V ++  +    + ++PGI  K
Sbjct: 61  YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKK 119


>gi|296272620|ref|YP_003655251.1| Holliday junction DNA helicase RuvA [Arcobacter nitrofigilis DSM
           7299]
 gi|296096794|gb|ADG92744.1| Holliday junction DNA helicase RuvA [Arcobacter nitrofigilis DSM
           7299]
          Length = 186

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 95/205 (46%), Gaps = 21/205 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I G I       + IDV G+ Y ++  +   S +  I +  +L     +R+D   L
Sbjct: 1   MIVGINGKIIRKEPTLLHIDVNGLVYEVFVSVNCSSKI--IENNVSLHTTYIIREDSQAL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+   +++ F  +  + GVG +VA+ + S  T +   + +   +  ++ ++PGI  K 
Sbjct: 59  YGFIDVNEKKLFDTVIKINGVGPKVALAICSTFTPSSFSQIVSSNDISMLKRVPGIGPKG 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ EL G  I                 +   S+ +  + A  AL +LG+ +D  + A
Sbjct: 119 ASRILVELSGFVI--------------DGNSDEDSVGTNMMEASMALESLGFKKDVISKA 164

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + S      +  + S ++R AL+ +
Sbjct: 165 LKS-----CSATNTSDLVREALKKL 184


>gi|330718512|ref|ZP_08313112.1| Holliday junction DNA helicase RuvA [Leuconostoc fallax KCTC 3537]
          Length = 196

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 87/205 (42%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G I  +   Y++++  G+ Y +                   ++E  +R+ +I L
Sbjct: 1   MYEYINGLITLVEPAYLVVENNGIGYRLNI-ANPYRF--TEKTSRIFYIEQIVRETEISL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +++ F  L  V G+G + A+ +L+  +A  L  ++   +   + Q PG+  K 
Sbjct: 58  YGFADASEKKLFNKLLDVSGIGPKSALAILASDSAIGLASAVENDDVSYLTQFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   L S        +  +Q H         +A+ AL+ LGY        
Sbjct: 118 AQQIILDLKGKLDDLVSAADAPEQSIVSKQDH-----RALDDALDALIALGYTSRDV-KM 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +   L  +  +      IR AL+ +
Sbjct: 172 IGKKL--DGVVDTTDGYIRQALKLL 194


>gi|170077885|ref|YP_001734523.1| Holliday junction DNA helicase RuvA [Synechococcus sp. PCC 7002]
 gi|229560135|sp|B1XL12|RUVA_SYNP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|169885554|gb|ACA99267.1| Holliday junction DNA helicase RuvA [Synechococcus sp. PCC 7002]
          Length = 209

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 15/214 (7%)

Query: 1   MIGKIKGNIEGLYED-----YVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMR 54
           M   +KG    ++ +     +++++V+ + Y I  P R    L   IG    +FV +  R
Sbjct: 1   MFSYLKGEAIAIHRNLQGRFFLILEVRDIGYEIQVPGRLAQELAAAIGQPQHIFVHSQQR 60

Query: 55  QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114
           +D   L+GF S   R  F  L SV G+GA+ A+ +L  +T  ELV++I+  + + +A+ P
Sbjct: 61  EDGTYLYGFASAAARDLFRQLISVSGIGAQGAIALLDTLTLPELVQAIVTADHRQLAKAP 120

Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           GI  K A R+  EL+ K            +             +   +    L+ LGY +
Sbjct: 121 GIGKKTAERLALELRSKLSQWRDQFSLPDTA-------AQPNAAVHEDLELTLLALGYQE 173

Query: 175 DQATTAVVSVLKK--EKNIADDSQIIRLALRAIS 206
            +   A+ ++ +        +  + IR A+  +S
Sbjct: 174 TEIRGAIATLSQDSILLQNDNADEWIRRAITLLS 207


>gi|46199998|ref|YP_005665.1| holliday junction DNA helicase ruvA [Thermus thermophilus HB27]
 gi|55980260|ref|YP_143557.1| Holliday junction DNA helicase RuvA [Thermus thermophilus HB8]
 gi|20455264|sp|Q9F1Q3|RUVA_THET8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|81405352|sp|Q72GZ9|RUVA_THET2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|24987359|pdb|1IXR|A Chain A, Ruva-Ruvb Complex
 gi|24987360|pdb|1IXR|B Chain B, Ruva-Ruvb Complex
 gi|11559438|dbj|BAB18786.1| Holliday junction binding protein [Thermus thermophilus]
 gi|46197625|gb|AAS82038.1| holliday junction DNA helicase ruvA [Thermus thermophilus HB27]
 gi|55771673|dbj|BAD70114.1| Holliday junction DNA helicase RuvA [Thermus thermophilus HB8]
          Length = 191

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 91/205 (44%), Gaps = 15/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +        ++   GV + +  P   L  L + G    +     ++++ + L
Sbjct: 1   MIRYLRGLVLKKEAGGFVLLAGGVGFFLQAPTPFLQAL-EEGKEVGVHTHLLLKEEGLSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + +   F LL SV GVG +VA+ +LS +    L  +++  +++++    G+  ++
Sbjct: 60  YGFPDEENLALFELLLSVSGVGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  ELKGK                   A        A  A+ AL  LG+ + QA   
Sbjct: 120 AERIALELKGKVPP-------------HLLAGEKVESEAAEEAVMALAALGFKEAQARAV 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+ +L +    A    +I+ AL+ +
Sbjct: 167 VLDLLAQNPK-ARAQDLIKEALKRL 190


>gi|313764321|gb|EFS35685.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL013PA1]
 gi|313772296|gb|EFS38262.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL074PA1]
 gi|313792007|gb|EFS40108.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL110PA1]
 gi|313802043|gb|EFS43277.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL110PA2]
 gi|313807654|gb|EFS46141.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL087PA2]
 gi|313810161|gb|EFS47882.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL083PA1]
 gi|313812811|gb|EFS50525.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL025PA1]
 gi|313815859|gb|EFS53573.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL059PA1]
 gi|313818691|gb|EFS56405.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL046PA2]
 gi|313820461|gb|EFS58175.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL036PA1]
 gi|313822733|gb|EFS60447.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL036PA2]
 gi|313825333|gb|EFS63047.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL063PA1]
 gi|313827628|gb|EFS65342.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL063PA2]
 gi|313830492|gb|EFS68206.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL007PA1]
 gi|313833528|gb|EFS71242.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL056PA1]
 gi|313838864|gb|EFS76578.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL086PA1]
 gi|314915311|gb|EFS79142.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL005PA4]
 gi|314918138|gb|EFS81969.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL050PA1]
 gi|314920215|gb|EFS84046.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL050PA3]
 gi|314925070|gb|EFS88901.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL036PA3]
 gi|314931738|gb|EFS95569.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL067PA1]
 gi|314958035|gb|EFT02138.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL002PA1]
 gi|314960393|gb|EFT04495.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL002PA2]
 gi|314962663|gb|EFT06763.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL082PA1]
 gi|314967471|gb|EFT11570.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL037PA1]
 gi|314973492|gb|EFT17588.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL053PA1]
 gi|314976172|gb|EFT20267.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL045PA1]
 gi|314978569|gb|EFT22663.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL072PA2]
 gi|314983806|gb|EFT27898.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL005PA1]
 gi|314987987|gb|EFT32078.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL005PA2]
 gi|314989797|gb|EFT33888.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL005PA3]
 gi|315077879|gb|EFT49930.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL053PA2]
 gi|315080504|gb|EFT52480.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL078PA1]
 gi|315084175|gb|EFT56151.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL027PA2]
 gi|315085518|gb|EFT57494.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL002PA3]
 gi|315088425|gb|EFT60401.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL072PA1]
 gi|315096039|gb|EFT68015.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL038PA1]
 gi|315098667|gb|EFT70643.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL059PA2]
 gi|315101330|gb|EFT73306.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL046PA1]
 gi|327326319|gb|EGE68109.1| holliday junction DNA helicase RuvA [Propionibacterium acnes
           HL096PA2]
 gi|327330390|gb|EGE72139.1| holliday junction DNA helicase RuvA [Propionibacterium acnes
           HL097PA1]
 gi|327331806|gb|EGE73543.1| holliday junction DNA helicase RuvA [Propionibacterium acnes
           HL096PA3]
 gi|327443583|gb|EGE90237.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL013PA2]
 gi|327445787|gb|EGE92441.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL043PA2]
 gi|327448230|gb|EGE94884.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL043PA1]
 gi|327453274|gb|EGE99928.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL092PA1]
 gi|327454013|gb|EGF00668.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL083PA2]
 gi|328753271|gb|EGF66887.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL025PA2]
 gi|328753338|gb|EGF66954.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL020PA1]
 gi|328754067|gb|EGF67683.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL087PA1]
 gi|328760719|gb|EGF74285.1| holliday junction DNA helicase RuvA [Propionibacterium acnes
           HL099PA1]
          Length = 194

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 50/200 (25%), Positives = 94/200 (47%), Gaps = 10/200 (5%)

Query: 9   IEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLD 68
           +      +V++D  GV   + CP  T +   +I    +L     +R++ + L+GF+   D
Sbjct: 2   VSAAGPTWVVLDNHGVGIKVLCPPATAAS-ARINQDMSLHTSLVVREESLTLYGFVEADD 60

Query: 69  RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
           R  F L+Q+  GVG ++A  ++S + A +L  +I  ++   + ++PGI  K A++++ EL
Sbjct: 61  RDAFELVQTASGVGPKLAAAIMSVLDAAQLATAITEEDDATLCRVPGIGRKGAAKMILEL 120

Query: 129 KGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV--LK 186
           K K  +L+          +        +  +       LV LG+    A  AV  V  LK
Sbjct: 121 KDKVAALTPRGASVSGATH-------VVAPWREQVAEGLVGLGWSAKDAEKAVDKVAALK 173

Query: 187 KEKNIADDSQIIRLALRAIS 206
           +         ++R ALR+++
Sbjct: 174 EADPAMTIGNLMRAALRSLA 193


>gi|257790728|ref|YP_003181334.1| Holliday junction DNA helicase RuvA [Eggerthella lenta DSM 2243]
 gi|257474625|gb|ACV54945.1| Holliday junction DNA helicase RuvA [Eggerthella lenta DSM 2243]
          Length = 197

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 98/205 (47%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +         I+V G+ Y +      LS L + G    +     +R D + L
Sbjct: 1   MIAFLKGVLAAKTATTAYIEVNGIGYAVGMSQAGLSKLPEAGAAVEVHTFLQVRDDGLAL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  ++  F  L  V GVG +VA+  LS  +   LV ++  Q+   + +IPG+  K 
Sbjct: 61  FGFLTLEEKALFERLIGVGGVGPKVALAALSAFSPAGLVAAVQAQDVAAVQRIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ ELKG          + ++ +  E A + +  +       AL+++G+  ++A  A
Sbjct: 121 ASRIILELKG-------SFDEGLAGLFDEAAPVVASAANLAGTREALLSMGFTSEEADVA 173

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
               LK     A +S +++ AL+ +
Sbjct: 174 ----LKGAPEGAAESVLLQYALKRL 194


>gi|159037423|ref|YP_001536676.1| Holliday junction DNA helicase RuvA [Salinispora arenicola CNS-205]
 gi|189045766|sp|A8LXW8|RUVA_SALAI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|157916258|gb|ABV97685.1| Holliday junction DNA helicase RuvA [Salinispora arenicola CNS-205]
          Length = 200

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 99/206 (48%), Gaps = 11/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     D+ +I+V GV   + C   T++ L ++G    L     +R+D + L
Sbjct: 1   MIASVRGVVTATGPDHAVIEVGGVGLAVQCAPGTIADL-RVGQPARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D  +  F LLQ+  GVG R+A  VL+  T   +  +I   ++  + ++PGI  K 
Sbjct: 60  YGFADDNAKALFELLQTASGVGPRLAQAVLAVHTPETVRAAIANADTAALTRVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +   +          V  + A   +  ++      ALV LG+   QA  A
Sbjct: 120 AERLVLELRDRIGPV---------PVGGDGAAGVTTGAWPEQVRQALVGLGWTAGQAEQA 170

Query: 181 VVSVLKK-EKNIADDSQIIRLALRAI 205
           V +V +  +  +     ++R A+R +
Sbjct: 171 VAAVAETVDGEVPPVPVLLRQAIRLL 196


>gi|169333981|ref|ZP_02861174.1| hypothetical protein ANASTE_00373 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258698|gb|EDS72664.1| hypothetical protein ANASTE_00373 [Anaerofustis stercorihominis DSM
           17244]
          Length = 199

 Score =  125 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 95/205 (46%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           M   IKG++  + E Y+ I+   GV +++     T + L    +   ++    +R++ + 
Sbjct: 1   MFDYIKGDVTDIREGYLTIENKSGVGFLLNVSENTATDLINDREDVKVYTYMAVRENDVS 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF +  +R+ F  L +V  +G ++A+ +LS ++   +V +I+ ++ K +    G+  K
Sbjct: 61  LFGFSTLFEREIFFKLLTVPKIGPKIALSILSALSPNMIVAAIMNKDYKSLCTANGVGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +I+  L+ K   L  + +  ++ +N               AI  L +LG+ +  A  
Sbjct: 121 AAEQIVVTLQDKFGDLPEIEEITVNDMN-------INNDLKDEAILGLTSLGFDRAYAAK 173

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
            V  +     +      I+ LAL+ 
Sbjct: 174 IVREI--SVDDDLTIEDILSLALQK 196


>gi|296127494|ref|YP_003634746.1| Holliday junction DNA helicase RuvA [Brachyspira murdochii DSM
           12563]
 gi|296019310|gb|ADG72547.1| Holliday junction DNA helicase RuvA [Brachyspira murdochii DSM
           12563]
          Length = 194

 Score =  125 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 48/206 (23%), Positives = 102/206 (49%), Gaps = 14/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I+GN++ + E  + +   GV Y I    +      K  D   L+ +   ++D + L
Sbjct: 1   MFAFIEGNVQIISEGVIALVCNGVGYEIIVSKKLE---VKNDDKIRLYTQLIHKEDAMIL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  +++ F  L +  GVG ++AM +LS  +  +L+  +  ++  ++ ++ G+ +K 
Sbjct: 58  YGFLTREEKKMFSTLIAASGVGPKLAMEILSTYSINDLMHILFNKDINLLKKVQGMGLKK 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ EL+ K   +          +N   + + +      + I AL++LG+  ++A  A
Sbjct: 118 AEKLLFELRDKIEKID---------INISSSSVQNYNDNESDVIKALISLGFSNNEAVKA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           + S+  + K+      +I  ALR +S
Sbjct: 169 LSSI--ENKDNMSAEDLISNALRNLS 192


>gi|238063870|ref|ZP_04608579.1| Holliday junction DNA helicase subunit ruvA [Micromonospora sp.
           ATCC 39149]
 gi|237885681|gb|EEP74509.1| Holliday junction DNA helicase subunit ruvA [Micromonospora sp.
           ATCC 39149]
          Length = 200

 Score =  125 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 101/206 (49%), Gaps = 11/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +     D+ +++V GV   ++C   TL+ L +IG    L     +R+D + L
Sbjct: 1   MIASVRGTVTATGPDHAVVEVGGVGLAVHCAPGTLAEL-RIGQPARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D  +Q F LLQ+  GVG R+A  VL+  T   + ++I   ++  + ++PGI  K 
Sbjct: 60  YGFADDDAKQLFELLQTASGVGPRLAQAVLAVHTPDAVRKAIANADTAALTRVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +   +          V  + A   +  ++      ALV LG+   QA  A
Sbjct: 120 AERLVLELRDRIGPV---------PVGADGAAGVTGGAWPDQVRQALVGLGWTAGQADQA 170

Query: 181 VVSVLKK-EKNIADDSQIIRLALRAI 205
           V +V +  +        +++ A+R +
Sbjct: 171 VAAVAETVDGPPPPVPVLLKQAIRLL 196


>gi|16330186|ref|NP_440914.1| Holliday junction DNA helicase RuvA [Synechocystis sp. PCC 6803]
 gi|3122847|sp|P73554|RUVA_SYNY3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|1652674|dbj|BAA17594.1| Holliday junction DNA helicase; RuvA [Synechocystis sp. PCC 6803]
          Length = 211

 Score =  125 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 52/214 (24%), Positives = 91/214 (42%), Gaps = 13/214 (6%)

Query: 1   MIGKIKGNIEGLYED-----YVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMR 54
           MI  ++G +  + ++     ++++ V GV Y +  P            +   +F    +R
Sbjct: 1   MIQFLQGQVVTVTKNIQNRWFLILSVNGVGYELQVPHSLAQQWTPPPPEPQQVFTHLLVR 60

Query: 55  QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114
           QDQI LFGF    +R  F  L  V G+GA++A+ ++  +    LV++++  N K + Q P
Sbjct: 61  QDQIALFGFGRLAERDLFGQLMGVTGIGAQLAIALIETLGLEGLVQAVVTGNVKQLCQTP 120

Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           G+  K A R+  ELK K      +        +          +   +    L+ LGY Q
Sbjct: 121 GVGKKGAERLALELKTKLSQWHKLQMGTGETDST-----LPTTALLEDLEMTLLALGYTQ 175

Query: 175 DQATTAVVSVLK--KEKNIADDSQIIRLALRAIS 206
            +   A+  V +        D    IR A+  +S
Sbjct: 176 TEIQQAIAMVSQVPDVAQSEDPEVWIRQAIGWLS 209


>gi|315108548|gb|EFT80524.1| holliday junction DNA helicase RuvA protein [Propionibacterium
           acnes HL030PA2]
          Length = 194

 Score =  125 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 50/200 (25%), Positives = 93/200 (46%), Gaps = 10/200 (5%)

Query: 9   IEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLD 68
           +      +V++D  GV   + CP  T +   +I    +L     +R++ + L+GF+   D
Sbjct: 2   VSAAGPTWVVLDNHGVGIKVLCPPATAAS-ARINQDMSLHTSLVVREESLTLYGFVEADD 60

Query: 69  RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
           R  F L+Q+  GVG ++A  ++S + A +L  +I  ++   +  +PGI  K A++++ EL
Sbjct: 61  RDAFELVQTASGVGPKLAAAIMSVLDAAQLATAITEEDDATLCSVPGIGRKGAAKMILEL 120

Query: 129 KGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV--LK 186
           K K  +L+          +        +  +       LV LG+    A  AV  V  LK
Sbjct: 121 KDKVAALTPRGASVSGATH-------VVAPWREQVAEGLVGLGWSAKDAEKAVDKVAALK 173

Query: 187 KEKNIADDSQIIRLALRAIS 206
           +         ++R ALR+++
Sbjct: 174 EADPAMTIGNLMRAALRSLA 193


>gi|255263783|ref|ZP_05343125.1| holliday junction DNA helicase RuvA [Thalassiobium sp. R2A62]
 gi|255106118|gb|EET48792.1| holliday junction DNA helicase RuvA [Thalassiobium sp. R2A62]
          Length = 220

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 72/218 (33%), Positives = 114/218 (52%), Gaps = 13/218 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGKI G I+    D+VLIDV+GV Y++Y   R ++ L   G+   LF +  +R+D ++L
Sbjct: 1   MIGKIAGRIDYRAADHVLIDVRGVGYVVYVSDRVMASLPGNGEAVALFTDLLVREDNLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++W  LL SVQG+GA+ +M +L  I A  +  +I L +   IA   G+  K 
Sbjct: 61  FGFTTLVEKEWHRLLMSVQGIGAKASMAILGAIGAEGVSRAIALGDWAAIATAKGVGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI------------CSMPSFAINAISALV 168
           A R + +LK KA ++ ++         + +A                  +    A+SAL 
Sbjct: 121 AQRAVLDLKNKAHAVMAMGGTLAEAQGEVEAEGEVIETAAPKVTRSGNGAAQSEALSALG 180

Query: 169 NLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           NLGY    A  AV        + AD S++IR AL+ ++
Sbjct: 181 NLGYSPSDAAGAVAEASGGAPD-ADTSELIRAALKLLA 217


>gi|328465569|gb|EGF36798.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes 1816]
          Length = 175

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 47/179 (26%), Positives = 84/179 (46%), Gaps = 4/179 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +  +Y++++   + Y I       S     G    +F+  H+R+D I L
Sbjct: 1   MYDYIKGTVTTITPEYIVVEAGQIGYQI-ITGNPFSFQRLEGTEAQVFLYQHVREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F  L SV G+G + A+ +++      L+ +I  ++   + + P +  K 
Sbjct: 60  FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLISAIESEDDVYLTKFPSVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           A +I+ +LKGK   L+ VV  ++  V  E   +  +      A+ AL  LGY   +   
Sbjct: 120 ARQIILDLKGK---LADVVASEIVYVAPENDMVAGLSPQLEEAVLALEALGYSTRELKK 175


>gi|28493235|ref|NP_787396.1| holliday junction DNA helicase RuvA [Tropheryma whipplei str.
           Twist]
 gi|28476276|gb|AAO44365.1| holliday junction DNA helicase RuvA [Tropheryma whipplei str.
           Twist]
          Length = 222

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 109/205 (53%), Gaps = 15/205 (7%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           I  + G +E +    V++++ G+ +++  P    S   ++     L+    +R+D + L+
Sbjct: 30  IASLSGLLEAVRPGSVVVNMHGIGFLVRVP---QSFNPEVDAEVKLYTSLQVREDSVSLY 86

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF S L+   F  L ++ GVG RVA+ +LS +T  E+  +++  + K + ++ G+  K+A
Sbjct: 87  GFASVLECTVFEQLITISGVGPRVALAILSVLTPAEVAAAVLEGDDKPLQRVSGVGKKLA 146

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
             I+ +L GK  S+    ++    V++           +   + AL+ LG+ + ++  AV
Sbjct: 147 GTIVLQLAGKLTSVPLENRKQEQAVDR-----------SAEIVQALIGLGWQRQESAAAV 195

Query: 182 VSVLKKEKNIADDSQIIRLALRAIS 206
            SVL+K++++    +I+R ALR ++
Sbjct: 196 ESVLEKDQSL-TMPEILRNALRYLA 219


>gi|116490641|ref|YP_810185.1| Holliday junction resolvasome, DNA-binding subunit [Oenococcus oeni
           PSU-1]
 gi|122277175|sp|Q04GA2|RUVA_OENOB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|116091366|gb|ABJ56520.1| Holliday junction DNA helicase subunit RuvA [Oenococcus oeni PSU-1]
          Length = 194

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 91/205 (44%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G I+ +   YV IDV G+ + ++ P           D  T+F E  +R +QI L
Sbjct: 1   MYDFLTGIIKTIAAGYVGIDVNGIGFRVFTPNPYEYNQ---NDQTTIFTEQIVRDNQISL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R  F  L +V G+G + A+ +++      L+ ++     K + + PGI  K 
Sbjct: 58  YGFKTVKERNLFQKLLNVSGIGPKSALAIIAGGDRDGLIAAVENGKPKYLTKFPGIGNKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK    S  +            ++    +   +A++ALV LG+   +    
Sbjct: 118 AQQIVLDLKGKLGDFSKNIAP--------MKNLLENSAELDDALAALVALGFSSKEVNK- 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +   L     +      I+  L+ +
Sbjct: 169 INPKLASLGEL-TTDAYIQKGLKLL 192


>gi|308235709|ref|ZP_07666446.1| Holliday junction ATP-dependent DNA helicase ruvA [Gardnerella
           vaginalis ATCC 14018]
 gi|311114741|ref|YP_003985962.1| crossover junction ATP-dependent DNA helicase RuvA [Gardnerella
           vaginalis ATCC 14019]
 gi|310946235|gb|ADP38939.1| crossover junction ATP-dependent DNA helicase RuvA [Gardnerella
           vaginalis ATCC 14019]
          Length = 212

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 62/211 (29%), Positives = 105/211 (49%), Gaps = 9/211 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G IE +     LI V GV Y +Y P   L+ L + G    ++    + QD + L
Sbjct: 1   MIGMLNGVIESVDSRCALICVSGVGYEVYMPSSDLAALHE-GQDVKVYTSLQVSQDAVTL 59

Query: 61  FGFLSDLDRQWFMLL-QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +GF S   ++ F+ + Q V GVG +VA+ +LS +    L+++I   +   ++  PG+  K
Sbjct: 60  YGFTSMPAKRIFLQIQQKVSGVGPKVALSLLSTLNVNRLLQAIADGDITALSSAPGLGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +I+ ELKG      S + +D +  + +        S     +  L++LG+ Q  A  
Sbjct: 120 GAQKIVLELKGSID--VSQLNEDDTSKDSKSYKKEFDESGISKVVDGLMSLGWKQSDAQR 177

Query: 180 AVVSVLKKEK-----NIADDSQIIRLALRAI 205
           AV +V   EK     + +D   ++R+AL A+
Sbjct: 178 AVENVCNSEKIALPISDSDMPNVLRMALAAL 208


>gi|296393859|ref|YP_003658743.1| Holliday junction DNA helicase RuvA [Segniliparus rotundus DSM
           44985]
 gi|296181006|gb|ADG97912.1| Holliday junction DNA helicase RuvA [Segniliparus rotundus DSM
           44985]
          Length = 199

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 88/205 (42%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G    +  D+V+++  G+ + +     T +     G    L     +R+D   L
Sbjct: 1   MIASIRGEAVEVGADHVVVECAGLGHHVVVLPSTAAA-ATRGAEVRLATSFIVREDAQTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F +L++V GVG ++AM VLS +    L  +I   +   + ++PG+  ++
Sbjct: 60  YGFPDRETRDLFDVLRTVSGVGPKLAMAVLSVLEPVALRRAIGEGDLGALTKVPGVGKRV 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+  ELK K     S      +                   +  LV LG+    A +A
Sbjct: 120 AERLALELKEKIGGPPSAAANLGAPEGS--------ALVRQQVVDGLVGLGFPLKPAESA 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             SV+++    A  +  +R AL  +
Sbjct: 172 ADSVMQENPE-ASPAVALRGALAIL 195


>gi|227510189|ref|ZP_03940238.1| Holliday junction DNA helicase RuvA [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227513117|ref|ZP_03943166.1| Holliday junction DNA helicase RuvA [Lactobacillus buchneri ATCC
           11577]
 gi|227083692|gb|EEI19004.1| Holliday junction DNA helicase RuvA [Lactobacillus buchneri ATCC
           11577]
 gi|227190394|gb|EEI70461.1| Holliday junction DNA helicase RuvA [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 198

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 91/205 (44%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G I  +   Y+++ V G+ Y+IY                 ++V   +    I L
Sbjct: 1   MYEFMDGQIVDITPAYIVLLVNGIGYLIY-TADPYRFNVDQNKTIRVYVYQSVSDSAILL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    D++ F  L +V G+G + A+ +L+    + LV +I  ++ K + + PG+  K 
Sbjct: 60  YGFYEADDKKLFEKLIAVSGIGPKSALAILAGNDRSGLVSAISNKDVKFLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +L+GK   LS +VQ                     +AISAL  LGY   Q   A
Sbjct: 120 AQQIILDLQGKVGDLSQIVQARSGQ------SASEQSDELRDAISALEALGYSAKQID-A 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +   L K+K      + + L L+ +
Sbjct: 173 IRLELGKDK-ALTTDEYLSLGLKLL 196


>gi|212715818|ref|ZP_03323946.1| hypothetical protein BIFCAT_00719 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661185|gb|EEB21760.1| hypothetical protein BIFCAT_00719 [Bifidobacterium catenulatum DSM
           16992]
          Length = 210

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 53/210 (25%), Positives = 96/210 (45%), Gaps = 14/210 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G ++ +     +I+V GV Y    P   L+ +   G    ++   ++ QD I L
Sbjct: 6   MIGMLHGQVDSIDAASAIIEVGGVGYETRMPSADLASMHA-GQTVKVYTSLNVSQDAITL 64

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S   ++ F+ LQ V G+G +VA+ +LS +    L  ++   ++  +A+ PG+  K 
Sbjct: 65  YGFSSLASKRMFLQLQKVSGIGPKVALSLLSTLPPERLARAVADGDATALAKAPGLGKKG 124

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELKG                        +  + +   +  L++LG+ Q  A  A
Sbjct: 125 AQKIILELKGSI--------DLSQIEGASPETRSTEDTGSEQVVEGLMSLGWRQQDAVHA 176

Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205
           V  V +           D  +++RLAL ++
Sbjct: 177 VQEVCESNHIDIPLGDDDVPRVLRLALASL 206


>gi|32266013|ref|NP_860045.1| Holliday junction DNA helicase RuvA [Helicobacter hepaticus ATCC
           51449]
 gi|44888424|sp|Q7VIU0|RUVA_HELHP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|32262062|gb|AAP77111.1| holliday junction DNA helicase RuvA [Helicobacter hepaticus ATCC
           51449]
          Length = 196

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 52/211 (24%), Positives = 97/211 (45%), Gaps = 20/211 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG-----KIGDFCTLFVETHMRQ 55
           MI  ++G I  L   Y  IDV GV Y +   +   S L      +      +     +R+
Sbjct: 1   MIVGLRGTIIRLEPMYAEIDVGGVIYGMQMSLNATSMLQTKIDSQPDAPVKIICAQIIRE 60

Query: 56  DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
           D   LFGF  ++++Q F  L  + GVG +VA+ +LS  T T   + I  ++ + + ++PG
Sbjct: 61  DAHLLFGFCEEIEKQTFERLIKISGVGPKVAIAILSTYTPTHFAKIIADKDIEALKKVPG 120

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           I +K A++IM ++ G    L          +  ++  I    +    A  AL +LG+ ++
Sbjct: 121 IGVKGAAKIMVDIAGFFAQL----------LQSQEESIAPSNNLKYEASLALQSLGFKRN 170

Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           +    +  +          S+I++ AL+ ++
Sbjct: 171 EIQKVLEHI-----EALSVSEIVKEALKRLA 196


>gi|311064395|ref|YP_003971120.1| holliday junction DNA helicase RuvA [Bifidobacterium bifidum
           PRL2010]
 gi|310866714|gb|ADP36083.1| RuvA Holliday junction DNA helicase [Bifidobacterium bifidum
           PRL2010]
          Length = 205

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 53/210 (25%), Positives = 92/210 (43%), Gaps = 14/210 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +     +I+V GV Y +             G    +F    + QD + L
Sbjct: 1   MISTLTGRVESVEASSAVIEVHGVGYEVRM-AAADLAALHAGQETHVFTSLTISQDAVTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLS   ++ F+ LQ V G+G +VA+ +LS +    L +++   ++  +++ PG+  K 
Sbjct: 60  FGFLSPASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLAKAVADGDTAALSKAPGLGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ EL G+        + D            S    A   I  LV+LG+    A  A
Sbjct: 120 AQKIILELAGRIDLDQIRPEAD--------GPSESRDPGARQVIEGLVSLGWRPQTAEEA 171

Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205
           V             +  D  ++++LAL ++
Sbjct: 172 VRQACDAASIATPISAEDVPRVLKLALSSL 201


>gi|172036123|ref|YP_001802624.1| Holliday junction DNA helicase RuvA [Cyanothece sp. ATCC 51142]
 gi|226698729|sp|B1WUV7|RUVA_CYAA5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|171697577|gb|ACB50558.1| Holliday junction DNA helicase [Cyanothece sp. ATCC 51142]
          Length = 212

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 97/214 (45%), Gaps = 13/214 (6%)

Query: 1   MIGKIKG---NIEGLYEDYV--LIDVQGVCYIIYCPIRTLSCLGKIG-DFCTLFVETHMR 54
           MI  +KG    +     + V  +++V  + Y +  P +    + +   D   +F    ++
Sbjct: 1   MISYLKGSPIEVIKNTNNRVILVLEVNEIGYELQIPSKLGREISQEKLDTIQIFTHVQIK 60

Query: 55  QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114
           +DQ  L+GF +  +R+ F  L SV G+GA+ A+ ++  +   ELV++I+  N ++++Q  
Sbjct: 61  EDQQILYGFSTTAERELFRQLISVSGIGAQSAIALIDTLGLEELVQAIVTGNIRILSQPS 120

Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           GI  K A RI  EL+ K      +V   ++                 +    L+ LGY  
Sbjct: 121 GIGRKTAERIALELRTKLSQWRKMVGVTVTSSAAM-----PSLEILEDIEMTLLALGYTN 175

Query: 175 DQATTAVVSVLKKE--KNIADDSQIIRLALRAIS 206
           ++   A+ ++ +        +  + I+ A+  +S
Sbjct: 176 EEINKAISTLSQDNLMLKNTNTEEWIKEAIAWLS 209


>gi|322386544|ref|ZP_08060171.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           cristatus ATCC 51100]
 gi|321269463|gb|EFX52396.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus
           cristatus ATCC 51100]
          Length = 204

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 92/206 (44%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG I  +   Y++++V  + YI++      +    +     ++V   +R+D   L
Sbjct: 9   MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSSLVNQETQIYVHQVVREDAQLL 67

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 68  YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 127

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK ++     +        +             A+ A++ LGY   +    
Sbjct: 128 AQQMVLDLEGKVVAADGPAES-------KAPVQTVDNQELEEAMEAMLALGYKAAE---- 176

Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205
           +  + K  +   D     I+ AL+ +
Sbjct: 177 LKKIKKFFEGTTDTAENYIKSALKML 202


>gi|320528322|ref|ZP_08029484.1| Holliday junction DNA helicase RuvA [Solobacterium moorei F0204]
 gi|320131236|gb|EFW23804.1| Holliday junction DNA helicase RuvA [Solobacterium moorei F0204]
          Length = 198

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 103/205 (50%), Gaps = 14/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +     D+V+++   + Y           L  + D   ++   H+ ++ + L
Sbjct: 4   MIAFVKGKVASYGADWVVVNCHDIGY--QMAYPHPENL-HLNDEVFIYTYLHITENDMSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF S  ++  F+ L SV+G+G + AMG+LS+     +V +I   +  ++ ++PGI  K 
Sbjct: 61  FGFESQDEKALFLKLISVKGLGPKTAMGMLSKCGYQSIVSAIESGDVTLLKKMPGIGAKS 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK +S+           +  +    S P+    A+  L NLGY Q +  +A
Sbjct: 121 ASQIVLDLKGKLVSV---------PTSSPKQDTVSYPAEIREALDGLKNLGYKQGE-LSA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V +++ +   +    + ++L L+ +
Sbjct: 171 VANMMSENPGL-TTEKYLKLGLQFL 194


>gi|224283112|ref|ZP_03646434.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium
           bifidum NCIMB 41171]
 gi|313140261|ref|ZP_07802454.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium
           bifidum NCIMB 41171]
 gi|313132771|gb|EFR50388.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium
           bifidum NCIMB 41171]
          Length = 205

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 53/210 (25%), Positives = 92/210 (43%), Gaps = 14/210 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +     +I+V GV Y +             G    +F    + QD + L
Sbjct: 1   MISTLTGRVESVEASSAVIEVHGVGYEVRM-AAADLAALHAGQETHVFTSLTISQDAVTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLS   ++ F+ LQ V G+G +VA+ +LS +    L +++   ++  +++ PG+  K 
Sbjct: 60  FGFLSPASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLAKAVADGDTAALSKAPGLGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ EL G+        + D            S    A   I  LV+LG+    A  A
Sbjct: 120 AQKIILELAGRIDLDQIRPEAD--------GPSESRDPGAKQVIEGLVSLGWRPQTAEEA 171

Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205
           V             +  D  ++++LAL ++
Sbjct: 172 VRQACDAASIATPISAEDVPRVLKLALSSL 201


>gi|291276652|ref|YP_003516424.1| Holliday junction DNA helicase [Helicobacter mustelae 12198]
 gi|290963846|emb|CBG39682.1| holliday junction DNA helicase [Helicobacter mustelae 12198]
          Length = 184

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 92/205 (44%), Gaps = 21/205 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +  L    +L+DV  V Y I+    +   L +  +   +++   +R+D   L
Sbjct: 1   MIFALKGKVFALEPAKLLLDVHDVIYEIHISFGSAEEL-QGKEEALVYISQIIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF++ +++Q F  L  + GVG +VA+ +LS  +A E +  I  ++   + ++PG+  K 
Sbjct: 60  FGFVTPMEKQIFDTLIKINGVGPKVALAILSTFSAQEFMAVIERKDIAALQKVPGVGTKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM EL G  + L                           A  AL NLGY +     A
Sbjct: 120 AGKIMVELSGAYVEL---------------LPKKDHTEHFQQAEMALENLGYKRAAIQKA 164

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + S+            II+ AL+ +
Sbjct: 165 LKSIKASN-----VQDIIKEALKLL 184


>gi|166363769|ref|YP_001656042.1| Holliday junction DNA helicase RuvA [Microcystis aeruginosa
           NIES-843]
 gi|189045757|sp|B0JRV0|RUVA_MICAN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166086142|dbj|BAG00850.1| holliday junction DNA helicase [Microcystis aeruginosa NIES-843]
          Length = 209

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 53/213 (24%), Positives = 100/213 (46%), Gaps = 13/213 (6%)

Query: 1   MIGKIKGNIEG--LYEDY---VLIDVQGVCYIIYCPIRTLSCLGKIG-DFCTLFVETHMR 54
           MI  ++G         +    +++DV  + Y I  P R    +G    D C +F    +R
Sbjct: 1   MINYLRGQAIEVIKTPNNRLILILDVNQIGYEIQIPSRLALDIGNNNNDSCQIFTHLLLR 60

Query: 55  QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114
           ++Q  L+GF +  +R+ F  L SV GVGA++A+ ++  +   ELV +I+  N+K++++ P
Sbjct: 61  EEQPLLYGFGTAPERELFRQLLSVNGVGAQLALALIDTLGIEELVVAIVTGNTKILSKTP 120

Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           G+ +K A RI  ELK K  +   + +   +        I    +   +    L+ LGY Q
Sbjct: 121 GVGLKTAERIALELKTKLAAWRQLREATTTITA-----ILPAAAILEDVQMTLLALGYSQ 175

Query: 175 DQATTAVVSVLKKEKNIADD--SQIIRLALRAI 205
           ++   A+  + +      +      I+ A+  +
Sbjct: 176 EEIDRAMAVLSQDALFSKNTQPEDWIKGAINWL 208


>gi|228475171|ref|ZP_04059897.1| holliday junction DNA helicase RuvA [Staphylococcus hominis SK119]
 gi|314936245|ref|ZP_07843592.1| holliday junction DNA helicase RuvA [Staphylococcus hominis subsp.
           hominis C80]
 gi|228270782|gb|EEK12184.1| holliday junction DNA helicase RuvA [Staphylococcus hominis SK119]
 gi|313654864|gb|EFS18609.1| holliday junction DNA helicase RuvA [Staphylococcus hominis subsp.
           hominis C80]
          Length = 201

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 50/206 (24%), Positives = 103/206 (50%), Gaps = 8/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           M   IKG++  L+  +++++   G+ Y I  P  +      +   C +F    +R+D   
Sbjct: 1   MYAYIKGHLSQLFPTHIVVETSSGIGYEIQTP-NSYRFQKYLNQECKVFTSLIVREDAQL 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF+S+ +++ F+ L  V G+G + A+ +L+  T  E+  +I  +N   + + PGI  K
Sbjct: 60  LYGFISEEEKEMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +I+ +LKGK      + ++    + + +  +    +    A+ AL  LGY + + + 
Sbjct: 120 TARQIVLDLKGKVK----ITEETSETLLQVEGQVEENDNIIKEALLALAALGYSKRELSK 175

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            V  VL K  +I    + +++ L+ +
Sbjct: 176 -VEKVLNK-TSIHSVDEAVKIGLKTL 199


>gi|262066188|ref|ZP_06025800.1| holliday junction DNA helicase RuvA [Fusobacterium periodonticum
           ATCC 33693]
 gi|294783453|ref|ZP_06748777.1| holliday junction DNA helicase RuvA [Fusobacterium sp. 1_1_41FAA]
 gi|291380095|gb|EFE87613.1| holliday junction DNA helicase RuvA [Fusobacterium periodonticum
           ATCC 33693]
 gi|294480331|gb|EFG28108.1| holliday junction DNA helicase RuvA [Fusobacterium sp. 1_1_41FAA]
          Length = 194

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 96/205 (46%), Gaps = 15/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +E    DY+ ID+ GV Y +Y P+R    +  +G+    ++  H+++D  +L
Sbjct: 1   MFEYLYGTVEYKKMDYIAIDINGVGYKVYFPLREYEKI-DLGNKYKFYIYNHIKEDAYKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GFL + DR+ + +L  + G+G  +A+ VLS  +  ++VE I   +   + ++P +  K 
Sbjct: 60  IGFLDERDRKIYEMLLKINGIGPSLALAVLSNFSYDKIVEIISKNDYTSLKKVPKLGEKK 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A  I+ +LK K  +L+    + +S                 + + AL  LGY + +    
Sbjct: 120 AQIIILDLKAKLKNLTYTEVETISI------------DMLEDLVLALEGLGYTKKEIDKT 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  V       +   + I+  L+ +
Sbjct: 168 LEKV--DLSAYSSLEEAIKGILKNM 190


>gi|111221574|ref|YP_712368.1| Holliday junction DNA helicase RuvA [Frankia alni ACN14a]
 gi|111149106|emb|CAJ60789.1| Holliday junction DNA helicase RuvA [Frankia alni ACN14a]
          Length = 252

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 48/193 (24%), Positives = 82/193 (42%), Gaps = 8/193 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L     +++V GV  ++ C   TL+ L +IG+  +L     +R+ ++ L
Sbjct: 1   MIASLAGTVRALGPLSAVVEVGGVGLLVQCTPATLARL-RIGEPASLATTLVVRETELTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     R  F +LQS  GVG ++A  VL       +  ++  ++   + ++PGI  K 
Sbjct: 60  YGFPDADARDVFEILQSAAGVGPKLAQAVLGVHEPDAVRRAVAEEDLAALTKVPGIGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDM-------SCVNKEQAHICSMPSFAINAISALVNLGYG 173
           A RI+ +L+ +                          A      + A     AL+ LGY 
Sbjct: 120 AQRIVLDLRDRLGPPRGAAVPGPRSGGADLGAGGVGAAGPGEAGAVADTVREALIGLGYS 179

Query: 174 QDQATTAVVSVLK 186
             +A  AV   L 
Sbjct: 180 AREADDAVSRALA 192


>gi|227524332|ref|ZP_03954381.1| Holliday junction DNA helicase RuvA [Lactobacillus hilgardii ATCC
           8290]
 gi|227088563|gb|EEI23875.1| Holliday junction DNA helicase RuvA [Lactobacillus hilgardii ATCC
           8290]
          Length = 198

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 91/205 (44%), Gaps = 9/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G I  +   Y+++ V G+ Y+IY                 ++V   +    I L
Sbjct: 1   MYEFMDGQIVDITPAYIVLLVNGIGYLIY-TADPYRFNVDQNKTIRVYVYQSVSDSAILL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    D++ F  L +V G+G + A+ +L+    + LV +I  ++ K + + PG+  K 
Sbjct: 60  YGFYEADDKKLFEKLIAVSGIGPKSALAILAGNDRSGLVLAISNKDVKFLTKFPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +L+GK   LS +VQ                     +AISAL  LGY   Q   A
Sbjct: 120 AQQIILDLQGKVGDLSQIVQARSGQ------SASEQSDELRDAISALEALGYSAKQID-A 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +   L K+K      + + L L+ +
Sbjct: 173 IRLELGKDK-ALTTDEYLSLGLKLL 196


>gi|310287480|ref|YP_003938738.1| Holliday junction DNA helicase ruvA [Bifidobacterium bifidum S17]
 gi|309251416|gb|ADO53164.1| Holliday junction DNA helicase ruvA [Bifidobacterium bifidum S17]
          Length = 206

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 53/210 (25%), Positives = 92/210 (43%), Gaps = 14/210 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +     +I+V GV Y +             G    +F    + QD + L
Sbjct: 2   MISTLTGRVESVEASSAVIEVHGVGYEVRM-AAADLAALHAGQETHVFTSLTISQDAVTL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLS   ++ F+ LQ V G+G +VA+ +LS +    L +++   ++  +++ PG+  K 
Sbjct: 61  FGFLSPASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLAKAVADGDTAALSKAPGLGKKG 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ EL G+        + D            S    A   I  LV+LG+    A  A
Sbjct: 121 AQKIILELAGRIDLDQIRPEAD--------GPSESRDPGARQVIEGLVSLGWRPQTAEEA 172

Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205
           V             +  D  ++++LAL ++
Sbjct: 173 VRQACDAASIATPISAEDVPRVLKLALSSL 202


>gi|304440231|ref|ZP_07400121.1| crossover junction ATP-dependent DNA helicase RuvA [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304371280|gb|EFM24896.1| crossover junction ATP-dependent DNA helicase RuvA [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 193

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 100/205 (48%), Gaps = 14/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG      E+ V I V G+  +I    R    + ++ +  TLF +  +R+D I +
Sbjct: 1   MIDIVKGIAILKEENSVTIMVGGIGLLINVSSRENKEI-RLNEEITLFTKMVVREDDISI 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF+S  +R  F LL  V G+G +VAMG++      EL + I+  + K + + PG+  K 
Sbjct: 60  YGFISKRERSIFSLLTMVSGIGPKVAMGIMGMYGEEELRKYILSSDVKSLTKAPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK + + +      D+           S+P    +AI ALV LG+   +   A
Sbjct: 120 AERIILELKDRIVKIFGDFIPDV---------KESVPLENDDAIEALVGLGFSAIEVKNA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +++V             I++AL+ I
Sbjct: 171 LMNV----DPSLSVDDKIKIALKNI 191


>gi|118475489|ref|YP_891982.1| holliday junction DNA helicase RuvA [Campylobacter fetus subsp.
           fetus 82-40]
 gi|166230534|sp|A0RP49|RUVA_CAMFF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|118414715|gb|ABK83135.1| holliday junction DNA helicase RuvA [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 184

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 97/207 (46%), Gaps = 24/207 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I+G I       V I    GV Y I   + T + L K G+   LF+   +R+D   
Sbjct: 1   MIKAIEGIITKKEPTNVWIKTLSGVSYGISISLFTSASLQK-GEKVELFITQVIREDANL 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF+ + +++ F +L  V G+GA  AM V S +   E   +++  +  V+ ++PGI  K
Sbjct: 60  LYGFIKESEQRIFEMLLKVNGIGASTAMAVCSSLGPDEFSIAVMNGDDAVLRRVPGIGPK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A  ++ +L                    +   I SMPS+   A  AL +LG+ +D+ + 
Sbjct: 120 TARTLIAQLSD-----------------AKFGEINSMPSYQNEAFMALESLGFKRDRISK 162

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
            +      E +  D + +I+ AL+ ++
Sbjct: 163 VLN-----ECSSNDTASLIKEALKKLA 184


>gi|148272996|ref|YP_001222557.1| Holliday junction DNA helicase RuvA [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|166230540|sp|A5CS07|RUVA_CLAM3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|147830926|emb|CAN01870.1| Holliday junction DNA helicase subunit [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 214

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 48/208 (23%), Positives = 91/208 (43%), Gaps = 14/208 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +    +L++V GV Y +    R    L + G   T+     +R+D + L
Sbjct: 1   MISSLRGTVLSVSGQTLLLEVHGVGYGVSVTPRHALEL-RNGSEATVLTSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    + + F LL  V GVG + A+ VL  +    + +++  ++     ++ GI  K 
Sbjct: 60  FGFPGPDELRAFELLCGVTGVGPKSALAVLEHLDPEAMAQAVAAEDDAAFRRVSGIGPKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT-- 178
           A  I+ +L GK        +   S  +   A          + ++AL+ LG+ +  A   
Sbjct: 120 AKLIVLQLAGKLFVTQPRARSATSAASTVTA----------DVVTALIGLGWSERVARTA 169

Query: 179 -TAVVSVLKKEKNIADDSQIIRLALRAI 205
                +    +   AD  +++R+AL  +
Sbjct: 170 VDDAAAAAADQGLPADMPRLLRVALGML 197


>gi|167755866|ref|ZP_02427993.1| hypothetical protein CLORAM_01383 [Clostridium ramosum DSM 1402]
 gi|237734834|ref|ZP_04565315.1| holliday junction DNA helicase subunit RuvA [Mollicutes bacterium
           D7]
 gi|167704805|gb|EDS19384.1| hypothetical protein CLORAM_01383 [Clostridium ramosum DSM 1402]
 gi|229382162|gb|EEO32253.1| holliday junction DNA helicase subunit RuvA [Coprobacillus sp. D7]
          Length = 188

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 95/205 (46%), Gaps = 19/205 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +  +  D+++++  G+ Y+IY            G    +F+   +++D + L
Sbjct: 1   MYSYLIGTVVEMNIDHIVVENSGIGYLIYVNNPYEYT---RGKEIKIFLYQQVKEDALLL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +++ F+ L  V+G+G + A+G+L+    T ++ +I   N   + +IPGI  K 
Sbjct: 58  YGFKTSEEKEMFLKLILVKGIGCKTAIGILATGDVTSIISAIETGNVAYLKKIPGIGPKA 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +L+GK               N   A      +    A   L+ LGY + +   A
Sbjct: 118 AQQIILDLQGKFK-------------NTPTATTLINNNDLDEAAEVLIALGYKKSEVDKA 164

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +L ++    D +  ++ AL  +
Sbjct: 165 LAVLLNEK---LDTNGYVKRALSLL 186


>gi|237739486|ref|ZP_04569967.1| holliday junction DNA helicase ruvA [Fusobacterium sp. 2_1_31]
 gi|229423094|gb|EEO38141.1| holliday junction DNA helicase ruvA [Fusobacterium sp. 2_1_31]
          Length = 194

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 96/205 (46%), Gaps = 15/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G +E    DY+ ID+ GV Y +Y P+R    +  +G+    ++  H+++D  +L
Sbjct: 1   MFEYLYGTVEYKKMDYIAIDINGVGYKVYFPLREYEKI-DLGNKYKFYIYNHIKEDTYKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GFL + DR+ + +L  + G+G  +A+ VLS  +  ++VE I   +   + ++P +  K 
Sbjct: 60  IGFLDERDRKIYEMLLKINGIGPSLALAVLSNFSYDKIVEIISKNDYTSLKKVPKLGEKK 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A  I+ +LK K  +L+    + +S                 + + AL  LGY + +    
Sbjct: 120 AQIIILDLKAKLKNLTYTEVETISI------------DMLEDLVLALEGLGYTKKEIDKT 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  V       +   + I+  L+ +
Sbjct: 168 LEKV--DLSAYSSLEEAIKGILKNM 190


>gi|170781148|ref|YP_001709480.1| Holliday junction DNA helicase RuvA [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|189045747|sp|B0REB9|RUVA_CLAMS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|169155716|emb|CAQ00837.1| holliday junction DNA helicase RuvA [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 214

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 49/208 (23%), Positives = 93/208 (44%), Gaps = 14/208 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +    +L++V GV Y +    R    L + G   T+     +R+D + L
Sbjct: 1   MISSLRGTVLSVSGQTLLLEVHGVGYGVSVTPRHALEL-RHGSEATVLTSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    + + F LL  V GVG + A+ VL  +    + +++  ++     ++ GI  K 
Sbjct: 60  FGFPGPDELRAFELLCGVTGVGPKSALAVLEHLDPEAMAQAVAAEDDAAFRRVSGIGPKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT- 179
           A  I+ +L GK        +   S  +   A          + ++AL+ LG+ +  A T 
Sbjct: 120 AKLIVLQLAGKLFVTQPRTRSASSAASTVTA----------DVVTALIGLGWSERVARTA 169

Query: 180 --AVVSVLKKEKNIADDSQIIRLALRAI 205
                +   ++   AD  +++R+AL  +
Sbjct: 170 VDDAAAAAAEQGLPADMPRLLRVALGML 197


>gi|148239406|ref|YP_001224793.1| Holliday junction resolvasome DNA-binding subunit [Synechococcus
           sp. WH 7803]
 gi|166231452|sp|A5GKN1|RUVA_SYNPW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|147847945|emb|CAK23496.1| Holliday junction resolvasome DNA-binding subunit [Synechococcus
           sp. WH 7803]
          Length = 215

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 54/219 (24%), Positives = 89/219 (40%), Gaps = 20/219 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQG----------VCYIIYCPIRTLSCLGKIGDFCTLFVE 50
           MIG ++G     +E        G          V Y +    R  +  G  G  CTL+V 
Sbjct: 1   MIGWLQGERIQSWEQ------GGRRGVVVACGGVGYEVQLTSRDQNGQG-TGSACTLWVH 53

Query: 51  THMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVI 110
              R D   LFGF    +R  F  L  V GVG ++A+ +L      ELV +I+  + K +
Sbjct: 54  QVQRDDGSTLFGFCDQQERDLFRTLIGVNGVGPQMALALLDCCRVHELVAAIVDGDLKRL 113

Query: 111 AQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF-AINAISALVN 169
            Q  G+  + A RI  EL+ +  + + + +  +S V++       +      +    L  
Sbjct: 114 TQAQGVGKRTAERIAVELRDRLGNWAPLQEPSLSLVDRSDVKAIPLGEPCLRDLQITLET 173

Query: 170 LGYGQDQATTAVVSVLK--KEKNIADDSQIIRLALRAIS 206
           LGY   +   A+ +V          D    +R +L+ +S
Sbjct: 174 LGYEDLEIRRAMRAVASGPDVPAEDDGDAWLRASLKWLS 212


>gi|163783946|ref|ZP_02178915.1| Holliday junction resolvasome DNA-binding subunit [Hydrogenivirga
           sp. 128-5-R1-1]
 gi|159880781|gb|EDP74316.1| Holliday junction resolvasome DNA-binding subunit [Hydrogenivirga
           sp. 128-5-R1-1]
          Length = 180

 Score =  124 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 48/206 (23%), Positives = 88/206 (42%), Gaps = 29/206 (14%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  IKG +  +  D+++I+       I  P +             ++     + +  RL
Sbjct: 1   MIDYIKGKVIEVLNDFIVIETGNFGIKIETPHKF------EKKDTKIYTYLTFKDESFRL 54

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF     R+ F+ L S+ G+G + A  +L      +   ++      +++ +PGI  K 
Sbjct: 55  FGFKDRQTRELFIKLTSINGIGVKHAFSILKNFNYEDFTLAVENNRIDLLSSVPGIGKKT 114

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ ELKGK                       S      +A+ ALV+LG+ +++    
Sbjct: 115 ASRIILELKGKLS--------------------FSEEPIFNDAVEALVSLGFEKEKVIKI 154

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  + +K        ++I+L+L+ +S
Sbjct: 155 VKELSQK---TNSLEELIKLSLQKLS 177


>gi|319937623|ref|ZP_08012027.1| Holliday junction DNA helicase subunit RuvA [Coprobacillus sp.
           29_1]
 gi|319807265|gb|EFW03877.1| Holliday junction DNA helicase subunit RuvA [Coprobacillus sp.
           29_1]
          Length = 188

 Score =  124 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 98/205 (47%), Gaps = 20/205 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG I  +  D++++D QG+ Y+IY            G    ++V   +++D I L
Sbjct: 1   MYSYIKGIIVDMARDHIVVDNQGIGYLIYVSNPYQFT---KGKETLVYVYQQVKEDGILL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFLS  ++  F+ L  V+G+G + A+G+L+      ++++I  +N   + +IPGI  K 
Sbjct: 58  FGFLSKEEKDLFLKLIMVKGIGCKTAIGILATGDVNAIIQAIESKNIVYLKKIPGIGPKA 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +L+GK               N   + +         AI  L+ LGY + +    
Sbjct: 118 AQQIILDLQGKF--------------NGVISEMILTSVEFDEAIEVLIALGYKRQEVDKV 163

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + ++ ++     D +  ++ AL  +
Sbjct: 164 MNTLSQEH---LDTNGYVKKALNLL 185


>gi|269837708|ref|YP_003319936.1| Holliday junction DNA helicase RuvA [Sphaerobacter thermophilus DSM
           20745]
 gi|269786971|gb|ACZ39114.1| Holliday junction DNA helicase RuvA [Sphaerobacter thermophilus DSM
           20745]
          Length = 193

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 99/206 (48%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G I   Y   VLID+ G+   +     T+  LG++GD   L+    +R+D I L
Sbjct: 1   MISGVRGPIHAKYPGIVLIDLHGLIIRVLTSQTTVDDLGEVGDHAELYTHLRVREDDITL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  + Q F LL SV GVG RVA+ +LS     E+   I  ++   ++++PGI  K 
Sbjct: 61  YGFSTPEELQLFELLTSVTGVGPRVALNILSSARPEEVHRVIESEDIAALSRVPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ EL+GK  + +      ++  + E                  + LGY   +A  A
Sbjct: 121 ASRIILELRGKLPAPAGAQAPALAAADAEAMEAL-------------MALGYTAPEARDA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  + + E       + +  AL+ ++
Sbjct: 168 LARIERHEGQ--TVEERVYAALQTLA 191


>gi|46201286|ref|ZP_00055335.2| COG0632: Holliday junction resolvasome, DNA-binding subunit
           [Magnetospirillum magnetotacticum MS-1]
          Length = 173

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 61/166 (36%), Positives = 96/166 (57%)

Query: 40  KIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELV 99
           ++G   TLF+ET +R+D I LFGFL   +R WF LL +VQGVGA+V + +LS     +L+
Sbjct: 2   EVGSAATLFIETQVREDAISLFGFLDTGERDWFRLLTTVQGVGAKVGLAILSVAAPDQLL 61

Query: 100 ESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF 159
           + I  Q+   + +  G+  K+A RI+TELK KA  ++       +      A + +    
Sbjct: 62  QIIAAQDKAGLTRANGVGPKLAVRILTELKDKAGKIALGGFNPTAGAVASSAPLPAASGR 121

Query: 160 AINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
             +A+SALVNLGY + +A  AV    ++  + AD S +IR +L+ +
Sbjct: 122 MEDAVSALVNLGYKRLEAFQAVGETARELGDDADSSALIRASLKRL 167


>gi|227495489|ref|ZP_03925805.1| possible crossover junction endodeoxyribonuclease [Actinomyces
           coleocanis DSM 15436]
 gi|226831036|gb|EEH63419.1| possible crossover junction endodeoxyribonuclease [Actinomyces
           coleocanis DSM 15436]
          Length = 195

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 100/205 (48%), Gaps = 15/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI   +G ++ +   ++++   G    I   + T + + + G+   L+    +R+D + L
Sbjct: 1   MISFFQGEVQAIKPGHLVLVNGGFGLSIQVTVGTANQV-RHGELVGLYTSLIVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL++ +R  F +LQ+V  +G R A+  L  +T  EL +++I  + K + +IPGI  K 
Sbjct: 60  YGFLTEDERDTFNVLQTVSKIGPRTALQALEALTPDELRQAVISSDEKTLQRIPGIGKKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ E+  K  + +  V+   +                   I+ LV+LGY +  A  A
Sbjct: 120 AQRMLIEIGDKLGTPTGNVKLGTTV-----------SVAETEVIAGLVSLGYSEVSAQAA 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V      + +  + S+++R AL  +
Sbjct: 169 VEPF---QGSDMNTSEMLRAALIQL 190


>gi|262283650|ref|ZP_06061415.1| Holliday junction DNA helicase motor protein [Streptococcus sp.
           2_1_36FAA]
 gi|262260707|gb|EEY79408.1| Holliday junction DNA helicase motor protein [Streptococcus sp.
           2_1_36FAA]
          Length = 197

 Score =  124 bits (311), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 94/206 (45%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    KG I  +   Y++++V  + YI++      +  G +     ++V   +R+D   L
Sbjct: 1   MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGHLHQEAKVYVHQVVREDAELL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ ++Q F+ L SV G+G   A+ +++      LV++I  +N   + + P I  K 
Sbjct: 60  YGFAAEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++ +L+GK +     +        K+     +       A+ A++ LGY   +    
Sbjct: 120 AQQMVLDLEGKVVIAGDDLSA------KDAVQASNENQELEEAMEAMLALGYKAAE---- 169

Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205
           +  + K  +   D     I+ AL+ +
Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195


>gi|68171608|ref|ZP_00544978.1| RuvA, C-terminal [Ehrlichia chaffeensis str. Sapulpa]
 gi|88658340|ref|YP_507141.1| holliday junction DNA helicase RuvA [Ehrlichia chaffeensis str.
           Arkansas]
 gi|123763770|sp|Q2GHE2|RUVA_EHRCR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|67998975|gb|EAM85656.1| RuvA, C-terminal [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599797|gb|ABD45266.1| holliday junction DNA helicase RuvA [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 190

 Score =  124 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 107/207 (51%), Gaps = 19/207 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ-IR 59
           MIG + G IE +Y +Y++++V  V YIIY   + L    K G+   L++ET++ +D   +
Sbjct: 1   MIGSLTGIIEEIYNNYIILNVGNVGYIIYVSHKVLQS-CKTGNNIKLYIETYVNRDNLTQ 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL   ++ +  +L ++ G+  + A+ +LS+++  ++  +++  N     +  GI  K
Sbjct: 60  LYGFLDKQEQDYMRMLVTINGINHKTAISILSKLSPEQIFSAVVSNNKNAF-RGNGIGEK 118

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           +A RI TEL+ K   +       +                  ++++AL++LGY + +A  
Sbjct: 119 LAGRITTELQYKISKMPIEETLIIK---------------EDDSLAALISLGYDKLKAFN 163

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           A+  +     +     +IIR AL+ +S
Sbjct: 164 AIQEIKANFPDD-SIQEIIRKALQKLS 189


>gi|116333841|ref|YP_795368.1| Holliday junction resolvasome, DNA-binding subunit [Lactobacillus
           brevis ATCC 367]
 gi|122269472|sp|Q03R35|RUVA_LACBA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|116099188|gb|ABJ64337.1| Holliday junction DNA helicase subunit RuvA [Lactobacillus brevis
           ATCC 367]
          Length = 202

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 84/205 (40%), Gaps = 5/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G I  +Y D+V++DV GV Y++         +       T++V   +      L
Sbjct: 1   MYEYLHGLITAVYPDHVVVDVNGVGYLVNTANPYRYEVSAT--AVTIYVYQAVSDTAQTL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    ++Q F+ L +V G+G + A+ +L+      L+ +I   ++  + + PG+  K 
Sbjct: 59  YGFSDFAEKQLFLKLINVNGIGPKSALAILANPDHQGLMMAIKTNDTGFLTKFPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +L+ K   L+     +     +        P  A    +     GY +      
Sbjct: 119 AGQIVLDLQNKLDDLAPATDDNTLFTPEVAPTTTENPQLADALAALTAL-GYRETAVKKI 177

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +  ++ N    +  +   LR +
Sbjct: 178 TAQL--RQFNGQTTNDYLSEGLRLL 200


>gi|242310193|ref|ZP_04809348.1| holliday junction ATP-dependent DNA helicase ruvA [Helicobacter
           pullorum MIT 98-5489]
 gi|239523490|gb|EEQ63356.1| holliday junction ATP-dependent DNA helicase ruvA [Helicobacter
           pullorum MIT 98-5489]
          Length = 192

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 95/206 (46%), Gaps = 18/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIR 59
           MI  ++G I       + I   GV Y ++  ++T + + +  G+  TL     +R+D   
Sbjct: 1   MIIALQGEIFFKEPTRIAIKCAGVIYEVFISLQTSNQITQTKGENLTLLTTHIIREDAQI 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGFL + +++ F  L  + GVG +VAM +LS  T     + +   + K + ++PGI  K
Sbjct: 61  LFGFLENNEKKLFDTLIKINGVGPKVAMAILSTYTPQTFAKVVESNDIKSMQRVPGIGPK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ EL G ++ LS            +        S     + AL +LGY  D    
Sbjct: 121 SAGRILVELSGWSLELS------------QTNQTIKEDSTLHQVVLALESLGYKNDIIQK 168

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
           A+  + K E       Q+++ AL+ I
Sbjct: 169 AIKGLEKDE-----VGQMVKAALKKI 189


>gi|224418856|ref|ZP_03656862.1| Holliday junction DNA helicase RuvA [Helicobacter canadensis MIT
           98-5491]
 gi|253828156|ref|ZP_04871041.1| Holliday junction DNA helicase motor protein [Helicobacter
           canadensis MIT 98-5491]
 gi|313142373|ref|ZP_07804566.1| holliday junction ATP-dependent DNA helicase ruvA [Helicobacter
           canadensis MIT 98-5491]
 gi|253511562|gb|EES90221.1| Holliday junction DNA helicase motor protein [Helicobacter
           canadensis MIT 98-5491]
 gi|313131404|gb|EFR49021.1| holliday junction ATP-dependent DNA helicase ruvA [Helicobacter
           canadensis MIT 98-5491]
          Length = 191

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 95/206 (46%), Gaps = 19/206 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIR 59
           MI  ++G I       + I+  GV Y ++  ++T + + +  GD  TL     +R+D   
Sbjct: 1   MIIALEGKIFAKEPTKIAINCTGVVYEVFISLQTSNQITQNKGDSITLLTTHIIREDVQN 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGFL   +++ F  L  + GVG +VAM +LS  T     + +   + K + ++PGI  K
Sbjct: 61  LFGFLESSEKKLFDTLIKINGVGPKVAMAILSTYTPQTFAKVVEGNDIKSMQRVPGIGPK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ EL G ++ LS             Q       S     I AL +LGY  D    
Sbjct: 121 SAGRILVELSGWSLELS-------------QNETNHKDSDYNQVILALESLGYKNDIIQK 167

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
           A+  + K E       Q+++ AL+ I
Sbjct: 168 AIKGLEKNE-----VGQMVKAALKKI 188


>gi|291533989|emb|CBL07102.1| Holliday junction DNA helicase subunit RuvA [Megamonas hypermegale
           ART12/1]
          Length = 161

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 44/143 (30%), Positives = 79/143 (55%), Gaps = 1/143 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +  +  D+  IDV GV Y ++    T + L K+ +   LF    +R+D + L
Sbjct: 1   MIGYLQGKVTYIASDFCFIDVHGVGYRVFISTSTRAQL-KMNEEIKLFTYLSVREDAMLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++ L+   F  L SV  +G +  +G+LS +++ +L+ +I  +   ++   PGI  K 
Sbjct: 60  YGFINQLEYDVFCKLISVSKIGPKAGLGLLSSLSSEKLIWAIQNKQVSLLTNAPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDM 143
           A RI+ ELK K   L+  +  ++
Sbjct: 120 AERIVLELKDKLTELNLSISDEV 142


>gi|149194599|ref|ZP_01871695.1| Holliday junction DNA helicase motor protein [Caminibacter
           mediatlanticus TB-2]
 gi|149135343|gb|EDM23823.1| Holliday junction DNA helicase motor protein [Caminibacter
           mediatlanticus TB-2]
          Length = 180

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 88/206 (42%), Gaps = 30/206 (14%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG I       + +DV+ + Y +   + T +           ++   +++++  L
Sbjct: 1   MIAALKGKIFEKDNGKIFLDVRDIIYELNVSLNTFAN----AKDGIFYITEIIKENEYSL 56

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF++  +++ F  L  + GVG +VA+ + S  T  E +  I  Q+   + ++PGI  K 
Sbjct: 57  YGFINKNEKKLFDNLIKLNGVGPKVALAICSTFTPDEFISIISSQDINSLKKVPGIGPKS 116

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ E+                        I ++      A++AL NLG+ +     A
Sbjct: 117 AKRILMEMGDF--------------------EIENINPIISQAVTALENLGFKRADILKA 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +            II+ AL+ +S
Sbjct: 157 ISGL------DGSLEDIIKEALKRLS 176


>gi|57239403|ref|YP_180539.1| Holliday junction DNA helicase RuvA [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579373|ref|YP_197585.1| Holliday junction DNA helicase RUVA [Ehrlichia ruminantium str.
           Welgevonden]
 gi|81352832|sp|Q5HAK5|RUVA_EHRRW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|57161482|emb|CAH58408.1| putative Holliday junction DNA helicase RuvA [Ehrlichia ruminantium
           str. Welgevonden]
 gi|58417999|emb|CAI27203.1| Holliday junction DNA helicase RUVA [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 191

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 55/207 (26%), Positives = 111/207 (53%), Gaps = 18/207 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ-IR 59
           MIG I GN+E + + Y++++V  + YIIY   + L    K+GD   L++ET++ +D   +
Sbjct: 1   MIGSITGNVEEIRDSYIILNVGNIGYIIYVSHKVLQT-CKVGDNIKLYIETYVNRDNITQ 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL+  ++ +  +L ++ G+  + A+ +LS+++  ++  +++  +     +  GI  K
Sbjct: 60  LYGFLNRQEQDYLKMLVTINGINYKTALSILSKLSPEQIFSAVVNNDKIAF-KGNGIGEK 118

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           +A RI+TEL+ K               NK             ++++AL++LGY + +A  
Sbjct: 119 LAGRIITELQYKI--------------NKMPIEETFSIIENDDSLAALISLGYEKLKAFN 164

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
            +  +  K  + A   ++IR AL+ +S
Sbjct: 165 VIQEIKSKTPD-ASTQEVIRKALQKLS 190


>gi|222099496|ref|YP_002534064.1| Holliday junction DNA helicase [Thermotoga neapolitana DSM 4359]
 gi|61657322|emb|CAI44241.1| holliday junction DNA helicase [Thermotoga neapolitana]
 gi|221571886|gb|ACM22698.1| Holliday junction DNA helicase [Thermotoga neapolitana DSM 4359]
          Length = 191

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 95/206 (46%), Gaps = 22/206 (10%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           I  I G +     + V +    G+ + I C  +T   L +    C L+    + QD + L
Sbjct: 5   IAGIYGKVVEKNGNTVFVSTNSGIVFEIACDTQTCEEL-EENRECYLYTFLSVSQDGVAL 63

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     +  F+ L  V  +G + A+ +LS      L+  I  Q+ + +++IPGIS K 
Sbjct: 64  YGFSDRKKKDLFLSLMKVSRLGPKTALKILSSEDVDTLISMINSQDVEGLSKIPGISRKT 123

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELKGK                  ++ +         ++ ALV+LGY + QA  A
Sbjct: 124 AERIVMELKGKF-----------------ESTVLKDLKTYHESLEALVSLGYPEKQARKA 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  VLK   +    S++I+ ALR +S
Sbjct: 167 IKEVLK---DGMSTSEVIKEALRILS 189


>gi|308187172|ref|YP_003931303.1| Holliday junction ATP-dependent DNA helicase ruvA [Pantoea vagans
           C9-1]
 gi|308057682|gb|ADO09854.1| Holliday junction ATP-dependent DNA helicase ruvA [Pantoea vagans
           C9-1]
          Length = 167

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 82/168 (48%), Gaps = 4/168 (2%)

Query: 38  LGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATE 97
           + ++     +F    +R+D   LFGF S  +R  F  L  V GVG ++A+ +LS ++A +
Sbjct: 1   MPELQHEAVIFTHFVVREDAQLLFGFNSKQERALFRELIKVNGVGPKLALAILSGMSAQQ 60

Query: 98  LVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVV-QQDMSCVNKEQAHICSM 156
            V ++  +    + ++PG+  K A R++ E+K +   +   +   D +      +     
Sbjct: 61  FVTAVEKEEIASLVKLPGVGKKTAERLVVEMKDRFKGMHGDLFGGDSAFTLTTPSAEPET 120

Query: 157 PSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204
                 A++ALV+LGY   +A+  +  V +     AD   +IR ALRA
Sbjct: 121 NDAESEAVAALVSLGYKPQEASRMISKVGR---PDADCETLIREALRA 165


>gi|126642622|ref|YP_001085606.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii ATCC
           17978]
          Length = 176

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 56/181 (30%), Positives = 88/181 (48%), Gaps = 8/181 (4%)

Query: 25  CYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGAR 84
            Y I  P+ T   L K G   TL+    +R+D  +L+GF    ++  F  L  V GVG +
Sbjct: 2   GYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQLYGFSDAQEKTIFRTLLKVNGVGPK 60

Query: 85  VAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMS 144
           +A+G+LS ++   LV +I   +   + ++PG+  K A R+M EL+ +  +L+    Q  S
Sbjct: 61  MALGILSTLSVELLVHTIEHDDVNTLVKVPGVGKKTAERLMIELRDRFKTLA----QGTS 116

Query: 145 CVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204
                        S    A +AL +LGY   +A  AV +V       AD   IIR AL++
Sbjct: 117 SAAALPQIQFVSNSPVAEAEAALQSLGYKPLEAQKAVAAVKADYTESAD---IIRAALKS 173

Query: 205 I 205
           +
Sbjct: 174 M 174


>gi|271967390|ref|YP_003341586.1| Holliday junction DNA helicase subunit RuvA [Streptosporangium
           roseum DSM 43021]
 gi|270510565|gb|ACZ88843.1| Holliday junction DNA helicase subunit RuvA [Streptosporangium
           roseum DSM 43021]
          Length = 206

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 61/212 (28%), Positives = 105/212 (49%), Gaps = 14/212 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D  +++V GV  +++C   TL+ L ++G+   L     +R++ + L
Sbjct: 1   MIASVRGRVAAIAPDGAVVEVGGVGMLVHCTPGTLATL-RVGEEARLATSLVVREESLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF SD +R  F +LQ+  GVG +VA+ +L+  T   L  ++   + K + ++PG+  K 
Sbjct: 60  FGFGSDDERGVFEMLQTANGVGPKVALAMLAVHTPNALRMAVASADVKALTRVPGVGPKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +LK K              VN       + P++     S LV LGY    A  A
Sbjct: 120 AQRIIVDLKDKL-------GTPDQAVNAALNGGAAAPAWRDQVHSGLVGLGYSARDADEA 172

Query: 181 VVSVLKK------EKNIADDSQIIRLALRAIS 206
           V +V  +      E      + +++ ALRA+S
Sbjct: 173 VAAVTPQADIEVAEGRSPQVATLLKAALRALS 204


>gi|154174555|ref|YP_001408214.1| Holliday junction DNA helicase RuvA [Campylobacter curvus 525.92]
 gi|166230533|sp|A7GYC2|RUVA_CAMC5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|112802462|gb|EAT99806.1| holliday junction DNA helicase RuvA [Campylobacter curvus 525.92]
          Length = 184

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 47/207 (22%), Positives = 91/207 (43%), Gaps = 24/207 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I+G I      +V++    GV Y ++  +   + L K G+   L     +R+D   
Sbjct: 1   MIRAIEGIITKKEPAFVVLKTAGGVSYGLFISLFCSAKLSK-GEKVELNTTQIIREDANL 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL   +++ F +L  + G+GA  AM + S ++      ++I  ++     +PGI  K
Sbjct: 60  LYGFLDTNEQKMFEMLIKLNGIGASTAMAICSSLSPNAFSNAVINGDADTFKSVPGIGPK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ EL                    +     S+P +   A+ AL  LG+ +++   
Sbjct: 120 TARRIIAELSD-----------------AKLISDESVPGYQNEALLALEALGFKREKIVK 162

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
            +  +          S++++ AL+ ++
Sbjct: 163 ILPDL-----KSTSTSELVKEALKKLA 184


>gi|282855630|ref|ZP_06264944.1| holliday junction ATP-dependent DNA helicase RuvA [Pyramidobacter
           piscolens W5455]
 gi|282586560|gb|EFB91814.1| holliday junction ATP-dependent DNA helicase RuvA [Pyramidobacter
           piscolens W5455]
          Length = 203

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 88/205 (42%), Gaps = 6/205 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  I+G +    E   +++  G    +    R      ++G    L+    +    I L
Sbjct: 1   MLASIRGKVVERSEFTAVVECNGFGVEVLLTRRAAER-CELGTQVFLYTLLQVGDAGIVL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +R+ F L+   +GVG + A+ +L  ++  E+V ++   + +++  +PGI  K 
Sbjct: 60  YGFADDTERRTFKLMILTKGVGGKAAISILQYLSPAEIVAAVEQNDIRLLTSVPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  EL  +      +         +           A + + AL +LG+ +  A  A
Sbjct: 120 AERICFELSDRIHKKGFIQ-----LTGEFHGAPAGDRQAAASVLDALESLGFDRASAVRA 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
             SV+ ++     +S+ I   LR +
Sbjct: 175 YKSVVAEQGEALGESETIMSCLRIL 199


>gi|28378879|ref|NP_785771.1| holliday junction DNA helicase RuvA [Lactobacillus plantarum WCFS1]
 gi|254557084|ref|YP_003063501.1| holliday junction DNA helicase RuvA [Lactobacillus plantarum JDM1]
 gi|308181078|ref|YP_003925206.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|38258511|sp|Q88V02|RUVA_LACPL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|28271716|emb|CAD64622.1| holliday junction DNA helicase RuvA [Lactobacillus plantarum WCFS1]
 gi|254046011|gb|ACT62804.1| holliday junction DNA helicase RuvA [Lactobacillus plantarum JDM1]
 gi|308046569|gb|ADN99112.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 203

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 90/206 (43%), Gaps = 7/206 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M     G +  +   YV+I+V G+ Y +         +G       +++   + ++ + L
Sbjct: 1   MYEYFLGQVTDVTPGYVVIEVSGIGYKVLTANPYRYQVGPT--AVKMYIHQAVSENGMSL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    ++  F  L  V G+G + A+ +L+      L+++I  +N+  +   PG+  K 
Sbjct: 59  FGFFDADEKALFEKLLGVSGIGPKSALAILANNDHAGLIQAINQENATYLTSFPGVGKKT 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKGK   L+     D++          ++     +A++AL  LGY +      
Sbjct: 119 AQQIVLDLKGKLNDLN----VDVTGQTALDVDAPAVDGALADALAALEALGYSKADVKKV 174

Query: 181 VVSVLK-KEKNIADDSQIIRLALRAI 205
              +    +   AD + ++   LR +
Sbjct: 175 TKKLETFSQTQGADTNTLLSEGLRLL 200


>gi|225352127|ref|ZP_03743150.1| hypothetical protein BIFPSEUDO_03742 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157374|gb|EEG70713.1| hypothetical protein BIFPSEUDO_03742 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 205

 Score =  120 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 55/211 (26%), Positives = 101/211 (47%), Gaps = 16/211 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G ++ +     +I+V GV Y    P   L+ +   G    ++   ++ QD I L
Sbjct: 1   MIGMLHGQVDFIDAASAIIEVGGVGYETRMPSADLASMHA-GQTVKVYTSLNVSQDAITL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S   ++ F+ LQ V G+G +VA+ +LS +    L +++   ++  +A+ PG+  K 
Sbjct: 60  YGFSSLASKRMFLQLQKVSGIGPKVALSLLSTLPPERLAKAVADGDATALAKAPGLGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179
           A +I+ ELKG           D+S +      + S         +  L++LG+ Q  A  
Sbjct: 120 AQKIILELKGSI---------DLSQIEGASKEVRSAEDAGSEQVVEGLMSLGWRQQDALH 170

Query: 180 AVVSVLKKEK-----NIADDSQIIRLALRAI 205
           AV +V +           D  ++++LAL ++
Sbjct: 171 AVQTVCESNHINVPLRDDDVPRVLKLALASL 201


>gi|158522217|ref|YP_001530087.1| DNA recombination protein RuvA [Desulfococcus oleovorans Hxd3]
 gi|254766957|sp|A8ZUH8|RUVA_DESOH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|158511043|gb|ABW68010.1| DNA recombination protein RuvA domain I [Desulfococcus oleovorans
           Hxd3]
          Length = 205

 Score =  120 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 47/202 (23%), Positives = 91/202 (45%), Gaps = 13/202 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG--KIGDFCTLFVETHMRQDQI 58
           MIG ++G +    ED +L+    V Y +  P   ++ L   + GD     +  +  + Q 
Sbjct: 1   MIGYLEGTLLKKKEDRILLLAGPVGYEVLLPAVVMASLQGKREGDPLFFHIYHYQTERQP 60

Query: 59  R--LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
           +  L GF ++ ++ +F LL +V+ +G   A+  L+     E+ E+I   NS ++ Q+ G+
Sbjct: 61  KPVLIGFNTEEEKDFFHLLITVEAIGPLKAVQCLTL-PIGEVAEAIETGNSALLGQLKGV 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALV-NLGYGQD 175
             + A +++  LKGK    +          +     +    S A   +  LV  LGY  +
Sbjct: 120 GGRTAQKMIATLKGKVGRFAD-------AGHSSAPDVPVTGSLADQTVEVLVGQLGYKPN 172

Query: 176 QATTAVVSVLKKEKNIADDSQI 197
           +A   V   LK+  +++    +
Sbjct: 173 EARLMVAGALKRNPDVSTPEAL 194


>gi|289523150|ref|ZP_06440004.1| holliday junction DNA helicase RuvA [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289503693|gb|EFD24857.1| holliday junction DNA helicase RuvA [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 196

 Score =  120 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 99/207 (47%), Gaps = 13/207 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  + E+ V++DV G    I C    LS L K     TL     + +    L
Sbjct: 1   MIKFVSGAVVSVEENIVVLDVSGFGMEIICSREALS-LCKPSKKVTLPTYLAVSESGPSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +R++F++L++V+G+GAR A+ +L  ++A EL+E I  +N + + ++PG+  K 
Sbjct: 60  YGFGDDFEREFFLMLKNVKGMGARTAISILRWLSARELIEIIAEKNLEKLEKVPGVGRKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  ELK K   L              +          +    AL  L + + +   A
Sbjct: 120 AERICFELKDKTKKLF-----------TGKKGTYERSDKLMLVRLALKELNFSEGEIDRA 168

Query: 181 VVSVLKKEK-NIADDSQIIRLALRAIS 206
           + S+    K +   +  +++ AL+ +S
Sbjct: 169 IGSLQTNAKIDEESEEVLLQKALKVLS 195


>gi|157736995|ref|YP_001489678.1| Holliday junction DNA helicase RuvA [Arcobacter butzleri RM4018]
 gi|167012656|sp|A8EST5|RUVA_ARCB4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|157698849|gb|ABV67009.1| holliday junction DNA helicase RuvA [Arcobacter butzleri RM4018]
          Length = 185

 Score =  120 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 93/205 (45%), Gaps = 22/205 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G I       + ++V GV Y ++  +   S +  + D   L +   +R+D   L
Sbjct: 1   MIVGLIGKIIKKEPTQLNVNVNGVIYEVFVSLNCSSKI--VSDDVKLEITHIIREDAQSL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL   +++ F  +  + GVG +VA+ + S  T T   + +   +  ++ ++PGI  K 
Sbjct: 59  YGFLDSNEKKLFDTVIKINGVGPKVALAICSTFTPTSFAQIVSSNDVSMLKRVPGIGPKG 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ EL G  I                     S  S A+ A  AL +LG+ +D  ++ 
Sbjct: 119 ASRILVELSGFIID---------------SNDETSGSSSALEAALALESLGFKKDLVSSV 163

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + + +         S +++ AL+ +
Sbjct: 164 LKTCVNSN-----TSDLVKEALKKL 183


>gi|320449357|ref|YP_004201453.1| holliday junction DNA helicase RuvA [Thermus scotoductus SA-01]
 gi|320149526|gb|ADW20904.1| holliday junction DNA helicase RuvA [Thermus scotoductus SA-01]
          Length = 191

 Score =  120 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 94/205 (45%), Gaps = 15/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +    E   L+ V GV +++  P   L  L K G    +     +R++ + L
Sbjct: 1   MIRYLRGTVLKREEGGFLLLVNGVGFLVQAPQTFLQSL-KEGQEVAVHTHLQLREEGLFL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  +     F LL SV GVG +VA+ +LS +T   L +++   + +++    G+  ++
Sbjct: 60  YGFPDEESLLLFELLLSVSGVGPKVALSLLSALTPRLLAQALAQGDLRLLTAASGVGRRL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  ELKGK                            A  AI AL  LG+ + QA   
Sbjct: 120 AERIALELKGKVPP-------------SLLTGQKVESQAAEEAILALTALGFKEGQARGV 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+ +L K  + A   ++I+ AL+ +
Sbjct: 167 VLDLLAKRPS-ASAQELIKEALKRL 190


>gi|288574886|ref|ZP_06393243.1| Holliday junction DNA helicase RuvA [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570627|gb|EFC92184.1| Holliday junction DNA helicase RuvA [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 202

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 50/208 (24%), Positives = 91/208 (43%), Gaps = 11/208 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  + G +  +     ++DV G+ + +    R  S L  +G   +L            L
Sbjct: 1   MLAMVTGTVLDVTTQMAVVDVSGLGFEMQLT-RKASSLCSVGKEVSLHCHVQFSDAGPTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF   L++  F+ L SV+G+G ++A+ VL  +TA  +V+++   +   +  +PGI  K 
Sbjct: 60  FGFADGLEKAVFLRLLSVRGIGGKLALQVLQGMTAEAVVQAVSFGDPSGLTGVPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  EL+ K          D                     + AL +LG+ +  ++ A
Sbjct: 120 AERICFELQEKMSEGLPKGSTDNLREMVVPDSET--------VMEALESLGFQRQSSSEA 171

Query: 181 VVSVLKKEK--NIADDSQIIRLALRAIS 206
           + ++ KK    +      +I LALR ++
Sbjct: 172 LAAIAKKRGSVDGLGVEDLIMLALRELN 199


>gi|315636187|ref|ZP_07891441.1| crossover junction ATP-dependent DNA helicase RuvA [Arcobacter
           butzleri JV22]
 gi|315479548|gb|EFU70227.1| crossover junction ATP-dependent DNA helicase RuvA [Arcobacter
           butzleri JV22]
          Length = 185

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 93/205 (45%), Gaps = 22/205 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G I       + ++V GV Y ++  +   S +  + D   L +   +R+D   L
Sbjct: 1   MIVGLIGKIIKKEPTQLNVNVNGVIYEVFVSLNCSSKI--VSDDVKLEITHIIREDAQSL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL   +++ F  +  + GVG +VA+ + S  T T   + +   +  ++ ++PGI  K 
Sbjct: 59  YGFLDSNEKKLFDTVIKINGVGPKVALAICSTFTPTSFAQIVSSNDVSMLKRVPGIGPKG 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ EL G  I                     S  S A+ A  AL +LG+ +D  ++ 
Sbjct: 119 ASRILVELSGFIID---------------SNDETSGSSSALEAALALESLGFKKDLVSSV 163

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           + + +         S +++ AL+ +
Sbjct: 164 LKTCVSSN-----TSDLVKEALKKL 183


>gi|257452123|ref|ZP_05617422.1| Holliday junction DNA helicase ruvA [Fusobacterium sp. 3_1_5R]
 gi|317058668|ref|ZP_07923153.1| holliday junction DNA helicase ruvA [Fusobacterium sp. 3_1_5R]
 gi|313684344|gb|EFS21179.1| holliday junction DNA helicase ruvA [Fusobacterium sp. 3_1_5R]
          Length = 193

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 97/205 (47%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G +     +Y  ++V G+ Y +Y  +R    + ++G    +++  H+R+++ +L
Sbjct: 1   MFEYLEGIVAYKKPEYFALEVHGIAYRVYISLRMYEKI-EVGKSYRVYIYNHIREEEYKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GFL + +R+ F LL SV+G+G  +A+  LS     +LV  I  +    + +IP +  K 
Sbjct: 60  IGFLEEKERKLFELLLSVKGIGVSLALAALSTYPVEQLVAYIQEEKVGQLKKIPKLGEKK 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +++ K                +++    S  ++A +  SAL NLGY + +    
Sbjct: 120 AQQIILDIQSKLKHFGV----------EQRFVEDSSMAWAEDIASALENLGYAKKEVEHL 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +    +         + ++  L+ +
Sbjct: 170 LQH--ENWTEYQSLEEAMKAILKKM 192


>gi|190571380|ref|YP_001975738.1| Holliday junction DNA helicase RuvA [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|213018779|ref|ZP_03334587.1| Holliday junction DNA helicase RuvA [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
 gi|254767401|sp|B3CMH6|RUVA_WOLPP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|190357652|emb|CAQ55096.1| Holliday junction DNA helicase RuvA [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|212995730|gb|EEB56370.1| Holliday junction DNA helicase RuvA [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
          Length = 190

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 63/207 (30%), Positives = 114/207 (55%), Gaps = 19/207 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFV--ETHMRQDQI 58
           MIG ++G ++ +  D+++++V  V YI+Y   +TLS    IG    L +    + R++  
Sbjct: 1   MIGNLRGIVDEVCSDHIILNVNDVGYIVYLSAKTLSA-CSIGSRVKLLIDTYANSRENVT 59

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
           +L+GF+S  ++Q   LL  V GV  + AM +LS++T  +L  +II ++   + ++ G+ +
Sbjct: 60  QLYGFISKEEQQCLRLLVKVSGVSYKTAMSILSKLTPEQLFLAIINEDKLAL-KVSGLGL 118

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K+ +RI+TEL GK   L              + +     S + +A+SAL+NLGY + +A 
Sbjct: 119 KLINRIITELNGKVSKL--------------EINNNHFHSISEDALSALINLGYERTKAY 164

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
             +  +  +  N+ D   IIR+AL+ I
Sbjct: 165 DTIKKIEDESPNL-DTKDIIRMALKTI 190


>gi|254796929|ref|YP_003081766.1| holliday junction DNA helicase RuvA [Neorickettsia risticii str.
           Illinois]
 gi|254590177|gb|ACT69539.1| holliday junction DNA helicase RuvA [Neorickettsia risticii str.
           Illinois]
          Length = 193

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 105/205 (51%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +  L ++ +++DV GV Y ++   R +  L + G   +L++E +  ++  +L
Sbjct: 1   MIGKLTGTVTDLCQESLILDVGGVGYNVFTTRRLIDSL-RTGQNLSLYIEHYFSENINKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     ++   +L  V+G+  ++A+ +L+ +   EL+ +I  ++   + +I GI  K+
Sbjct: 60  YGFECKKSQEVARMLSKVKGINYKIALSLLNHLELGELILAIQNKDESRL-KIKGIGEKL 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
             RI+TE     + L   +   +S  N               A+SALV LG+    +   
Sbjct: 119 VKRIITETYEDFLKLDLQLPGTVSSTNIH---------IVSEAVSALVKLGFQHKPSHKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+ ++  +  I + +++I LAL+ +
Sbjct: 170 VMEIMTNQPAI-EIAELITLALKML 193


>gi|328947934|ref|YP_004365271.1| Holliday junction ATP-dependent DNA helicase ruvA [Treponema
           succinifaciens DSM 2489]
 gi|328448258|gb|AEB13974.1| Holliday junction ATP-dependent DNA helicase ruvA [Treponema
           succinifaciens DSM 2489]
          Length = 206

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 91/197 (46%), Gaps = 10/197 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G + G +   + I+  G+ + +  P  +L  +  +G    +FV     ++ + L
Sbjct: 1   MFNSLTGVVTGKFPQKLFIETNGIEWDVTVPDTSLEKIPSVGIKGRVFVWMQHTENLMSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF ++ +R  F  L  V G+G + A+ ++S I+   L E +   +   + ++PG+  K 
Sbjct: 61  FGFATENERALFFDLLKVDGIGPKGAVKIMSNISVAALAEILDSGDVDALKKVPGVGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+  LKGK               N++ +      +   + I ALV++GY + +A  A
Sbjct: 121 AGKIILSLKGKL----------SFVSNEKISSAVRKNNAYSDVIDALVSMGYDRAKAEDA 170

Query: 181 VVSVLKKEKNIADDSQI 197
           V  +  + ++    S +
Sbjct: 171 VSKISSELQSDEKFSLL 187


>gi|289641361|ref|ZP_06473526.1| Holliday junction DNA helicase RuvA [Frankia symbiont of Datisca
           glomerata]
 gi|289508823|gb|EFD29757.1| Holliday junction DNA helicase RuvA [Frankia symbiont of Datisca
           glomerata]
          Length = 264

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 43/183 (23%), Positives = 79/183 (43%), Gaps = 8/183 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  L  D  +++V GV  ++ C   TL+ L ++G    L     +R+ ++ L
Sbjct: 1   MIASVAGTVAALSPDAAVVEVGGVGLLVQCAPATLAGL-RVGQQARLVTTLVVRETELTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F  LQS  GVG R+A  VL   +   +  ++  ++   + ++PGI  K 
Sbjct: 60  YGFADADERDVFETLQSASGVGPRLAQAVLGVHSPDSVRRAVAAEDLAALTKVPGIGRKG 119

Query: 121 ASRIMTELKGKAISLSSVV-------QQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           A RI+ +L+ +                   +  +       +  +       AL+ LGY 
Sbjct: 120 AQRIVLDLRDRLGPPVPAPAAGDDGVGVGGAGGDGAAPAAGTGVTAGEQVRLALLGLGYT 179

Query: 174 QDQ 176
             +
Sbjct: 180 ARE 182


>gi|33865569|ref|NP_897128.1| Holliday junction DNA helicase RuvA [Synechococcus sp. WH 8102]
 gi|44888398|sp|Q7U7F0|RUVA_SYNPX RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|33632738|emb|CAE07550.1| putative holliday junction DNA helicase RuvA [Synechococcus sp. WH
           8102]
          Length = 205

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 89/212 (41%), Gaps = 17/212 (8%)

Query: 1   MIGKIKGNIEGLYE----DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG +KG+++   +    + VLI   GV Y +    R    +         ++   +  D
Sbjct: 1   MIGWLKGDVQHRDQKGSRNLVLIACGGVGYDVQLIERDWQAV-STDQRHEFWIHQVVSAD 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
            ++LFGFL   +R  F  L  V GVG +  + +L+     ELV +++  + K + +  G+
Sbjct: 60  NLQLFGFLQLAERDLFRELIQVSGVGPQAGLALLNACAYKELVTALVHSDLKTLCRAKGV 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             + A R+  EL+ +              V         +   A + I+ L  LG+   +
Sbjct: 120 GKRTAERLALELRTRL----------TDSVASTGPERNQLDPVAPDLIATLETLGFETHE 169

Query: 177 ATTAVVSV--LKKEKNIADDSQIIRLALRAIS 206
              A+  +  +   ++  DD   +R  ++ +S
Sbjct: 170 IRDALQRLNGMGGPQDGDDDDAWLRACIKLMS 201


>gi|315187235|gb|EFU20992.1| Holliday junction DNA helicase RuvA [Spirochaeta thermophila DSM
           6578]
          Length = 197

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 52/210 (24%), Positives = 96/210 (45%), Gaps = 18/210 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  ++G   G+  + VLI+  G+ + I  P   LS L + GD   L+V  + R+D + L
Sbjct: 1   MLYSVRGVYRGVDGEKVLIETGGLTWEIDVPSSILSQLPEPGDSLLLYVYLYHREDVLSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF S  +R+ F+ L  VQGVG R A+ ++S +      E I  ++   +A+ PGI  K 
Sbjct: 61  IGFASREERRLFLDLLKVQGVGPRQALRIISSVPVPIFREIIQNEDLARLAKTPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++  LKG  +       +                      + AL  +G+ + +A + 
Sbjct: 121 AQKLLLTLKGSYVKQGPGGTEKAGP--------------HRELVEALAEMGFDRSRAESV 166

Query: 181 VVSVLKKEKNIADDS----QIIRLALRAIS 206
           +  ++++            +I+R A+  +S
Sbjct: 167 LPDIIQEVSGGESVEGKEQEILRRAIIRLS 196


>gi|168333338|ref|ZP_02691622.1| Holliday junction DNA helicase RuvA [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 183

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 102/206 (49%), Gaps = 25/206 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIG-DFCTLFVETHMRQDQIR 59
           MIG + G +   +E+ +L++V G+ Y I+         GKI      +++  ++++D   
Sbjct: 1   MIGYLVGTVAERFENIILLEVNGIGYEIFM-------XGKIDVAEVKIYIYENIKEDAYD 53

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF+S  +++ F  L SV G+G + A  ++       LVE I+ +++  I ++PGI  K
Sbjct: 54  LYGFVSLAEKELFKKLISVNGIGPKAAAALIVLHGIN-LVECIVNEDASEITRVPGIGAK 112

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           IASR++ ELK K  +  ++                 +      A +ALV LGY + QA  
Sbjct: 113 IASRLILELKDKLSAFKTL-------------EKRVVVDGLEEATAALVALGYNKKQAAR 159

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
           AV +V     +I D    I+ AL  +
Sbjct: 160 AVNAVYNYSDSIEDT---IKKALAVL 182


>gi|297624718|ref|YP_003706152.1| Holliday junction DNA helicase RuvA [Truepera radiovictrix DSM
           17093]
 gi|297165898|gb|ADI15609.1| Holliday junction DNA helicase RuvA [Truepera radiovictrix DSM
           17093]
          Length = 208

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 89/204 (43%), Gaps = 9/204 (4%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           I  + G +  +    +++        ++ P  TL  + ++G    L     ++++ + L+
Sbjct: 13  IAYLDGVVAEIRAGSLIVQAGAFGLEVFAPKPTL-MVCRVGSAVRLHTYFLVKEELLALY 71

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF        F  L  V GVG ++A+ +LS +    L  +I+  ++ ++A  PG+  K+A
Sbjct: 72  GFHDRDLHTLFTHLIGVSGVGPKLALALLSSMQTPLLAGAILQGDAGLLASTPGVGKKMA 131

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
            RI+ +LK K         +++                A +A+ AL+ LGY + Q    V
Sbjct: 132 ERIILDLKNKL-------PEELLAPGARGKVTTLSSPAAEDAVGALLALGYRETQVKGVV 184

Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205
             +  KE   A    +IR AL  +
Sbjct: 185 AQLALKEPE-AGAETLIRKALAQL 207


>gi|88607371|ref|YP_504791.1| Holliday junction DNA helicase RuvA [Anaplasma phagocytophilum HZ]
 gi|123722839|sp|Q2GLG0|RUVA_ANAPZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|88598434|gb|ABD43904.1| Holliday junction DNA helicase RuvA [Anaplasma phagocytophilum HZ]
          Length = 191

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 101/207 (48%), Gaps = 18/207 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ-IR 59
           MIG + G IE + +  +++ V GV YI++   RTL    K GD   L++ET++ +D   +
Sbjct: 1   MIGTLSGIIEEVQDTSIILAVGGVGYIVHVSYRTLIN-CKRGDSIKLYIETYVNRDNVPQ 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF    ++    +L  V G+  R A+ +L R+T  +L  +I+ ++   +    G+  K
Sbjct: 60  LYGFTDTEEQNCLKMLIKVSGINYRTALAILDRLTPDQLFSAIVNEDKAALKVG-GVGAK 118

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           + +RI TEL      L   +        ++            +A+SAL++LGY + +   
Sbjct: 119 LINRIFTELTPLVQKLEFNIMDKRGPSVEDS-----------DALSALLSLGYEKTRVLN 167

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           A+  V        + S  +R AL+ +S
Sbjct: 168 ALEKV----GVSHNLSDTVRFALKELS 190


>gi|294786921|ref|ZP_06752175.1| holliday junction DNA helicase RuvA [Parascardovia denticolens
           F0305]
 gi|315226557|ref|ZP_07868345.1| crossover junction ATP-dependent DNA helicase RuvA [Parascardovia
           denticolens DSM 10105]
 gi|294485754|gb|EFG33388.1| holliday junction DNA helicase RuvA [Parascardovia denticolens
           F0305]
 gi|315120689|gb|EFT83821.1| crossover junction ATP-dependent DNA helicase RuvA [Parascardovia
           denticolens DSM 10105]
          Length = 207

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 62/210 (29%), Positives = 99/210 (47%), Gaps = 12/210 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G++  +  D +L+DV G+ + +  P R L+ L   G    L V T + QD I L
Sbjct: 1   MIGSLEGDVLSVSADGLLLDVNGIGFSLRMPARDLAGLHAGGHERILTVMT-VSQDAIAL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFLS   +  F  LQ V GVG + AM +LS ++  EL ++I   +   + + PG+  K 
Sbjct: 60  YGFLSASSKTLFTQLQKVSGVGPKAAMAILSTLSPEELGKAIHDNDVTALTRAPGVGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ EL G      SV    +      +     + S     I  L +LG+ +  A  A
Sbjct: 120 AQKIILELHG------SVDFSSLDEAPASRVEEGGLDSSVDQVIQGLSSLGWQRRDAYQA 173

Query: 181 VVSVLKKEKNIADD-----SQIIRLALRAI 205
            +  L +    A        Q++R AL  +
Sbjct: 174 TMEALGQLSLTAPLTAGQIPQVLRKALSDL 203


>gi|218296106|ref|ZP_03496875.1| Holliday junction DNA helicase RuvA [Thermus aquaticus Y51MC23]
 gi|218243483|gb|EED10012.1| Holliday junction DNA helicase RuvA [Thermus aquaticus Y51MC23]
          Length = 191

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 94/205 (45%), Gaps = 15/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +    E   L+ V GV + +  P   L  L + G+   +     +R++ + L
Sbjct: 1   MIRYLKGVVARKEEGSFLLLVGGVGFQVQAPSPFLQGL-REGEEVGVHTHLALREEGLFL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF  +   + F LL SV GVG +VA+ +LS +    L +++   + +++    G+  ++
Sbjct: 60  FGFPEEESLKLFELLLSVSGVGPKVALALLSALPPRLLAQALAEGDLRLLTSASGVGRRL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+  ELKGK        ++  S   +E     +               G+ + QA + 
Sbjct: 120 AERLALELKGKVPKDLLTGEKVESREAEEAILALAAL-------------GFKEGQARSV 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+ +L K    A   ++I+ ALR +
Sbjct: 167 VLDLLAKNP-GAKAQELIKEALRRL 190


>gi|307718817|ref|YP_003874349.1| holliday junction DNA helicase RuvA [Spirochaeta thermophila DSM
           6192]
 gi|306532542|gb|ADN02076.1| holliday junction DNA helicase RuvA [Spirochaeta thermophila DSM
           6192]
          Length = 197

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/210 (24%), Positives = 93/210 (44%), Gaps = 18/210 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  + G   G+  + VLI+  G+ + I  P   LS L   GD   L V  + R+D + L
Sbjct: 1   MLYSLSGVYRGIEGEKVLIETGGLTWEIDVPSSLLSQLPDPGDSLLLHVYLYHREDVLSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF S  +R+ F+ L  VQG+G R A+ ++S +      E I  ++   +A+ PGI  K 
Sbjct: 61  IGFASREERRLFLDLLKVQGIGPRQALRIISSVPVPLFREIIQKEDLARLAKTPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++  LKG  +               +              + ALV +G+ + +A   
Sbjct: 121 AQKLLLTLKGSYVR--------------QGTGDTEEAGPHRELVEALVEMGFDRARAERV 166

Query: 181 VVSVLKKEKNIADDS----QIIRLALRAIS 206
           +  ++++            +I+R A+  +S
Sbjct: 167 LPDIIREVSEGEGVEGKEQEILRRAIIRLS 196


>gi|88608038|ref|YP_506455.1| holliday junction DNA helicase RuvA [Neorickettsia sennetsu str.
           Miyayama]
 gi|123763710|sp|Q2GDJ1|RUVA_NEOSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|88600207|gb|ABD45675.1| holliday junction DNA helicase RuvA [Neorickettsia sennetsu str.
           Miyayama]
          Length = 193

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 106/205 (51%), Gaps = 12/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIGK+ G +  L ++ +++DV GV Y ++   R +  L + G   +L++E +  ++  +L
Sbjct: 1   MIGKLTGTVTDLCQESLILDVGGVGYNVFTTRRLIDSL-RTGQNLSLYIEHYFLENINKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF     ++   +L  V+G+  ++A+ +L+ +   EL+ +I  ++   + +I GI  K+
Sbjct: 60  YGFECRKSQEVARMLSKVKGINYKIALSLLNHLELGELILAIQNKDESRL-KIKGIGEKL 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
             RI+TE     + L S +    S  N            A  A+SALV LG+    +   
Sbjct: 119 VKRIITETYEDFLKLDSHLSGIASSTNVH---------IASEAVSALVKLGFQHKPSHKV 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V+ ++ K   I + +++I LAL+ +
Sbjct: 170 VMEIMTKRPAI-EIAELITLALKML 193


>gi|257466083|ref|ZP_05630394.1| Holliday junction DNA helicase ruvA [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|315917239|ref|ZP_07913479.1| holliday junction DNA helicase ruvA [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|313691114|gb|EFS27949.1| holliday junction DNA helicase ruvA [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 193

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 97/205 (47%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G +     +Y  ++V G+ Y +Y  +R    + ++G    +++  H+R+++ +L
Sbjct: 1   MFEYLEGIVAYKKPEYFALEVHGIAYRVYISLRMYEKI-EVGKSYRVYIYNHIREEEYKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GFL + +R+ F LL SV+G+G  +A+  LS     +LV  I  +    + +IP +  K 
Sbjct: 60  IGFLEEKERKLFELLLSVKGIGVSLALAALSTYPVEQLVAYIQEEKVGQLKKIPKLGEKK 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +++ K                +++    S  ++A +  SAL NLGY + +    
Sbjct: 120 AQQIILDIQSKLKHFGV----------EQRLVEDSSMAWAEDIASALENLGYAKKEVEHL 169

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +    +         + ++  L+ +
Sbjct: 170 LQH--ENWIEYQSLEEAMKAILKKM 192


>gi|300870312|ref|YP_003785183.1| Holliday junction DNA helicase RuvA [Brachyspira pilosicoli
           95/1000]
 gi|300688011|gb|ADK30682.1| holliday junction DNA helicase, RuvA [Brachyspira pilosicoli
           95/1000]
          Length = 194

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/207 (22%), Positives = 96/207 (46%), Gaps = 16/207 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           M   I+G +  + E  + +    GV Y I    +         D   L+ +   ++D + 
Sbjct: 1   MFAFIEGKVCTISEGIIALLCSNGVAYEIIVSKK---LNVNNDDNIRLYTQLIHKEDSMT 57

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  +++ F  L S  GVGA++AM VLS  +  E++  +  ++  ++ ++ G+ +K
Sbjct: 58  LYGFKTREEKKMFNTLMSASGVGAKLAMEVLSTYSIDEIMHILFNKDINMLKKVQGMGVK 117

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +++ E++ K   +   +               S      + I AL++LG+  ++A  
Sbjct: 118 KAEKLLFEIRDKIEKIDINISS----------SKISYNENESDVIKALISLGFSNNEAVK 167

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           A+ ++  + K       +I LALR +S
Sbjct: 168 ALSNI--ENKENKTTEDLISLALRNLS 192


>gi|170017578|ref|YP_001728497.1| Holliday junction DNA helicase RuvA [Leuconostoc citreum KM20]
 gi|229560098|sp|B1MZV1|RUVA_LEUCK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|169804435|gb|ACA83053.1| Holliday junction DNA helicase RuvA [Leuconostoc citreum KM20]
          Length = 196

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/206 (24%), Positives = 95/206 (46%), Gaps = 13/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           M   I G I  +Y  Y++I D  GV Y ++          +      ++VE  +R++++ 
Sbjct: 1   MYEYINGLITNIYPAYLVIADRSGVGYKLFV-ANPYRF--EQNVESHVYVEQIVRENEMT 57

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF+ + ++  F  L +V G+G + A+ +L+   A  LV ++   ++  + Q PG+  K
Sbjct: 58  LYGFIDENEKYLFNKLLNVSGIGPKSALAILASDDAAGLVTAVANDDASYLTQFPGVGKK 117

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +I+ +LKGK   L+      +  V        +    A+       +LGY       
Sbjct: 118 TAQQIVLDLKGKLDDLALSAGMTVETVPTTDNQALADALAALE------SLGYSAKDVAK 171

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            + +VL  +K+  D    IR AL+ +
Sbjct: 172 -LQTVLANQKDTTDG--YIRSALKFL 194


>gi|157164589|ref|YP_001466908.1| holliday junction DNA helicase RuvA [Campylobacter concisus 13826]
 gi|166230532|sp|A7ZDQ0|RUVA_CAMC1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|112800289|gb|EAT97633.1| holliday junction DNA helicase RuvA [Campylobacter concisus 13826]
          Length = 184

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 50/206 (24%), Positives = 92/206 (44%), Gaps = 24/206 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I+G +      + ++    GV Y I+  +   + L K G+   L +   +R+D   
Sbjct: 1   MIKAIEGVVTKKEPAFAVLKTNSGVSYGIFISLFCSAKLSK-GEKVELAITQIIREDANL 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL   +++ F +L  + G+GA  AM V S +++     +II  ++     +PGI  K
Sbjct: 60  LYGFLDANEQKMFEMLIKLNGIGASTAMAVCSSLSSQAFTNAIISGDADTFKSVPGIGPK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ EL                    +     S+PS+   A+ AL  LG+ +++   
Sbjct: 120 TARRIIAELSD-----------------TKLISDESVPSYQNEALLALEALGFKREKIVK 162

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            +      +    + S +I+ AL+ +
Sbjct: 163 IL-----PDCKSENTSDLIKEALKKL 183


>gi|152992417|ref|YP_001358138.1| Holliday junction DNA helicase RuvA [Sulfurovum sp. NBC37-1]
 gi|166231450|sp|A6Q8H2|RUVA_SULNB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|151424278|dbj|BAF71781.1| holliday junction DNA helicase RuvA [Sulfurovum sp. NBC37-1]
          Length = 185

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 88/205 (42%), Gaps = 23/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +E     ++ ++V G+ Y I   I T + + +      LF+   +R+D   L
Sbjct: 1   MIVGMEGIVERRDPTFIHLNVNGIIYEIQVSINTSNAIQE--KRVKLFITQVIREDADLL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF+   +++ F  +  + GVG +V + + S  T     + +  ++  ++ ++PGI  K 
Sbjct: 59  FGFMDTNEKKMFDTVLKINGVGPKVGLAICSTFTPETFAKVVASKDVSMLKRVPGIGPKA 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ EL    +                             A+ AL +LG+ +D    A
Sbjct: 119 ASRILVELADFIVD---------------GNAAEGSSGALGEAVMALESLGFKKDAIQKA 163

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +           D S +++  L+ +
Sbjct: 164 LS------GCSGDTSTLVKEGLKKL 182


>gi|254525561|ref|ZP_05137613.1| holliday junction ATP-dependent DNA helicase RuvA [Prochlorococcus
           marinus str. MIT 9202]
 gi|221536985|gb|EEE39438.1| holliday junction ATP-dependent DNA helicase RuvA [Prochlorococcus
           marinus str. MIT 9202]
          Length = 225

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 50/218 (22%), Positives = 104/218 (47%), Gaps = 15/218 (6%)

Query: 1   MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLGK---IGDFCTLFVETHM 53
           MI  I G +  +++     +VLI+ QG+ Y I         L          TL+++   
Sbjct: 1   MISWINGELVEIWQTNQKFFVLINCQGLGYEIQILESFFLKLKTNQISNKNITLWIKYIK 60

Query: 54  RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113
           ++D   LFGF S   + +F+ + SV+G+G+++ M +L++ + +E++++I  Q+ K+I  +
Sbjct: 61  KEDSDLLFGFASKDQKFFFIEILSVRGIGSQIGMSILNKFSISEIIKAIKTQDKKLICSV 120

Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           PGI  K++ R++ ELK K    S V  ++     + +     +     +    L +L Y 
Sbjct: 121 PGIGQKMSDRLILELKSKFK--SKVQIEEEKGQEEFEITNPEINKLMDDLQLTLQSLNYK 178

Query: 174 QDQATTAVVSVLKKEK------NIADDSQIIRLALRAI 205
             +  T +  ++K+               +++LA+  +
Sbjct: 179 NKEIKTILPFLIKELGLHTKKEKNLSFENLLKLAMNHL 216


>gi|309805314|ref|ZP_07699365.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LactinV
           09V1-c]
 gi|308165390|gb|EFO67622.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LactinV
           09V1-c]
          Length = 167

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 89/179 (49%), Gaps = 12/179 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G +  +   Y+++DV GV Y +Y P      +        +FVE  +R++ I L
Sbjct: 1   MFEYLQGKVTIINPAYIVLDVVGVGYKLYTP-NPYQFI--ENKQYCIFVEQVVRENAITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF ++ D+Q F+ L SV G+G + A+ +++   +  L+ +I     K + + PG+  K+
Sbjct: 58  YGFATNEDKQLFLKLISVSGIGPKSALAIMAAENSQSLMAAIEQGEIKYLTKFPGVGKKV 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           AS+I+ +LKGK          D+S   + +  +        +AI AL  LGY   +   
Sbjct: 118 ASQIILDLKGKL---------DVSDQPQLELILDQDNPALKDAILALSALGYSNKEVEK 167


>gi|309800933|ref|ZP_07695065.1| Holliday junction DNA helicase RuvA [Bifidobacterium dentium
           JCVIHMP022]
 gi|308222469|gb|EFO78749.1| Holliday junction DNA helicase RuvA [Bifidobacterium dentium
           JCVIHMP022]
          Length = 185

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 87/184 (47%), Gaps = 9/184 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +E +     LI+V GV Y I  P   L+ +   G    ++   ++ QD I L
Sbjct: 1   MIGMLHGRVESVDMSSALIEVGGVGYEIRMPSADLASMHA-GQEVKVYTSLNVSQDAITL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+   ++ F+ LQ V G+G +VA+ +LS +    L  ++   ++  +A+ PG+  K 
Sbjct: 60  FGFLTPASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLAHAVADGDATALAKAPGLGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ ELKG            +              + +   +  L++LG+ Q  A  A
Sbjct: 120 AQKIILELKGSIDLSQIETAASVIS--------RPEDTGSEQVVEGLISLGWRQQDALHA 171

Query: 181 VVSV 184
           V  V
Sbjct: 172 VQEV 175


>gi|257456050|ref|ZP_05621253.1| holliday junction DNA helicase RuvA [Treponema vincentii ATCC
           35580]
 gi|257446508|gb|EEV21548.1| holliday junction DNA helicase RuvA [Treponema vincentii ATCC
           35580]
          Length = 202

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 51/211 (24%), Positives = 97/211 (45%), Gaps = 16/211 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G + G   + V I+  G+ + I+    +    G  G    ++   + R+DQ+RL
Sbjct: 1   MFNSISGTLTGKTAESVYIETHGIEWEIFVSTLSADRFGAAGSTVRVYTWLYHREDQMRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  +R  F+ L  V+G+G + A+ +LS + +  L  ++   +   +  IPGI  K 
Sbjct: 61  FGFLTPAERSLFLDLTKVEGIGPKQALKILSGLDSAALEAALEAGDVARLQSIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++  LKG+   L    + + +             S   + I AL+++GY + +A   
Sbjct: 121 AQKMVLALKGQLTGLQDSGRAETA-----------KKSEFEDIIIALIDMGYDRKRAAET 169

Query: 181 VVSVLKKE-----KNIADDSQIIRLALRAIS 206
           V +  +          A + ++ R A+  +S
Sbjct: 170 VDAAAQSMRTQGIDPTAKEEELFRTAIVNLS 200


>gi|257459533|ref|ZP_05624642.1| holliday junction DNA helicase RuvA [Campylobacter gracilis RM3268]
 gi|257442958|gb|EEV18092.1| holliday junction DNA helicase RuvA [Campylobacter gracilis RM3268]
          Length = 184

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 86/207 (41%), Gaps = 24/207 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I+G I        +I    GV Y +   + T + L + G    L     +R+D   
Sbjct: 1   MIAAIEGIITRKEPTACVIKCASGVSYALSLSLNTSAKLTQ-GKLTELACVQILREDADL 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL + +++ F  L  + GVGA  AM V S +   +    +   ++  +  +PGI  K
Sbjct: 60  LYGFLDESEKKMFETLIKLSGVGASTAMAVCSTLAPQDFARCVATGDAATLTSVPGIGPK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ EL                    +        ++   A SAL +LG+ +D+   
Sbjct: 120 TARRIIAELGD-----------------AKLMEFGPSETYKNEAASALQSLGFKRDKINQ 162

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
            +        +  + S +++ AL+ ++
Sbjct: 163 ILA-----GCSSTNTSDLVKEALKKLA 184


>gi|317178761|dbj|BAJ56549.1| Holliday junction DNA helicase motor protein [Helicobacter pylori
           F30]
          Length = 183

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 87/205 (42%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +      I+V+GV Y +   +RT S L + G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEAHIEVRGVVYEVQVSMRT-SALLQAGQEARLKILQVIKEDVHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+ GI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVQGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETSPVRNEVFLALESLGFKSAE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INKVLKTLKPHLSTEAAIKEALQQL 181


>gi|325474386|gb|EGC77574.1| Holliday junction ATP-dependent DNA helicase ruvA [Treponema
           denticola F0402]
          Length = 201

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 51/211 (24%), Positives = 104/211 (49%), Gaps = 15/211 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G + G   D V ++  G+ + I+     L  LG +G    ++   + R+DQ+RL
Sbjct: 1   MFNSISGILSGKTTDSVYVENSGIEWEIFVSALALDALGTVGKEVKVYTWLYHREDQMRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F+ L  V+GVG R A+ ++S +  + L +++   +   + + PG+  K 
Sbjct: 61  FGFPNQAERSLFLDLTKVEGVGPRQALKIMSGLNFSSLEKALEEGDLDTLQKAPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++  LKGK  +L+ V  +  + V+ E            + ++AL  +G+ +      
Sbjct: 121 AQKMILALKGKLTNLNEVSSKGQASVSCE----------YEDIVTALTEMGFERKSVIFQ 170

Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAIS 206
           V  + ++ K      + ++ ++ R ++ A+S
Sbjct: 171 VEKIAEEMKAAGSDPLKNEEELFRRSIVALS 201


>gi|326693304|ref|ZP_08230309.1| Holliday junction DNA helicase RuvA [Leuconostoc argentinum KCTC
           3773]
          Length = 197

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 98/206 (47%), Gaps = 12/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           M   I G I  +Y  Y+++ D  GV Y +Y          +      ++VE  +R+++I 
Sbjct: 1   MYEYINGLITNIYPAYIVVCDRSGVGYKLY-TANPYRF--EQNVESHVYVEQIVRENEIA 57

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF+ + ++  F  L +V G+G + A+ +L+   A  LV ++   +   + Q PG+  K
Sbjct: 58  LYGFMDENEKILFNKLLNVSGIGPKSALAILASGDAQGLVNAVANDDVSYLTQFPGVGKK 117

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +I+ +LKGK   L+     D++      +   +      +A++AL +LGY   +   
Sbjct: 118 TAQQIILDLKGKLGDLAVSAGLDLTT-----SQPAANNQALADALAALTSLGYSAKEIAK 172

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            +   L +  +  D    IR AL+ +
Sbjct: 173 -IEKTLAQTADTTDG--YIRSALKLL 195


>gi|255322240|ref|ZP_05363386.1| holliday junction DNA helicase RuvA [Campylobacter showae RM3277]
 gi|255300613|gb|EET79884.1| holliday junction DNA helicase RuvA [Campylobacter showae RM3277]
          Length = 184

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 49/207 (23%), Positives = 93/207 (44%), Gaps = 24/207 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I+G I       +++    GV Y +   +   + L + G    L +   +R+D   
Sbjct: 1   MIKAIEGIITKKEPANLILKTAGGVSYGVAISLFCSAKL-ERGQSVELNITQIIREDADL 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL   +++ F  L  + G+GA  AM V S +     + ++   ++  +  +PGI  K
Sbjct: 60  LYGFLDSNEQKMFETLIKLSGIGAATAMAVCSSLNPNAFLNAVKSGDAAALQTVPGIGAK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ EL    +++   +                 PS    AI AL +LG+ +++ T 
Sbjct: 120 TARRIIAELSDAKMTMDENL-----------------PSHQHEAILALESLGFKREKITK 162

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           A+      E +  +  ++I+ AL+ ++
Sbjct: 163 ALS-----ECDAQNTGELIKQALKKLA 184


>gi|219871499|ref|YP_002475874.1| holliday junction DNA helicase motor protein [Haemophilus parasuis
           SH0165]
 gi|219691703|gb|ACL32926.1| holliday junction DNA helicase motor protein [Haemophilus parasuis
           SH0165]
          Length = 171

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 49/172 (28%), Positives = 82/172 (47%), Gaps = 4/172 (2%)

Query: 32  IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91
           + +   L  + +   +F    +R+D   LFGF+   +R  F  L    GVG ++A+ +LS
Sbjct: 1   MTSFYNLPDLNEDTMIFTHLVIREDAHLLFGFVQKQERMLFRELIKTNGVGPKLALAILS 60

Query: 92  RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQA 151
            ++ +E + +I  +    + +IPGI  K A R++ ELKGK  +L       +       +
Sbjct: 61  AMSVSEFMSAIEQEELAKLIKIPGIGRKTAERLLVELKGKFSTLFHHEISILQPSGNLLS 120

Query: 152 HICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
                P     AI AL++LGY    A   V  V +K  + +   Q+IR AL+
Sbjct: 121 MASMSP--VNEAIDALISLGYKAADAEKMVKKVNRK--SESTSEQLIREALK 168


>gi|283769122|ref|ZP_06342027.1| Holliday junction DNA helicase RuvA [Bulleidia extructa W1219]
 gi|283104308|gb|EFC05686.1| Holliday junction DNA helicase RuvA [Bulleidia extructa W1219]
          Length = 192

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 98/206 (47%), Gaps = 16/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G I  + +DY++I+ QG+ +++Y P         +G+   +F    + ++ +RL
Sbjct: 1   MIAFIQGVITEIGDDYIVINHQGLGWLVYYPHSLE---VHVGEELQVFTHMSVSENDMRL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  ++  F+ L SV+G+G + AM +L +     + E+I   +   + ++PGI  K 
Sbjct: 58  YGFSSSKEKTLFLNLISVKGLGPKTAMTMLQKSGYALITEAISKGDVAALKKLPGIGAKS 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +L+GK +            V      + + P     A+ AL N GY        
Sbjct: 118 ASQIVLDLQGKLV-----------AVEVSSTKMMNYPLEIQEALEALKNFGYKGGDLNVV 166

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
              +L  E+      + IR  L+  +
Sbjct: 167 GNKML--EQPSMKTEEYIRFGLKFFA 190


>gi|42527369|ref|NP_972467.1| Holliday junction DNA helicase RuvA [Treponema denticola ATCC
           35405]
 gi|81411982|sp|Q73LJ9|RUVA_TREDE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|41817954|gb|AAS12378.1| Holliday junction DNA helicase RuvA [Treponema denticola ATCC
           35405]
          Length = 201

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 51/211 (24%), Positives = 105/211 (49%), Gaps = 15/211 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G + G   D V ++  G+ + I+     L  LG +G    ++   + R+DQ+RL
Sbjct: 1   MFNSISGILSGKTTDSVYVENSGIEWEIFVSALALDALGTVGKEVKVYTWLYHREDQMRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F+ L  V+GVG R A+ ++S + ++ L +++   +   + + PG+  K 
Sbjct: 61  FGFPNQAERSLFLDLTKVEGVGPRQALKIMSGLNSSSLEKALEEGDLDTLQKAPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++  LKGK  +L+ V  +  + V+ E            + ++AL  +G+ +      
Sbjct: 121 AQKMILALKGKLTNLNEVSSKGQASVSCE----------YEDIVTALTEMGFERKSVIVQ 170

Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAIS 206
           V  + ++ K      + ++ ++ R ++ A+S
Sbjct: 171 VEKIAEEMKAAGSDPLKNEEELFRRSIVALS 201


>gi|116327800|ref|YP_797520.1| Holliday junction specific DNA binding protein [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116331541|ref|YP_801259.1| Holliday junction specific DNA binding protein [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|122280714|sp|Q04RG9|RUVA_LEPBJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|122284404|sp|Q053A8|RUVA_LEPBL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|116120544|gb|ABJ78587.1| Holliday junction specific DNA binding protein [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116125230|gb|ABJ76501.1| Holliday junction specific DNA binding protein [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 212

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 52/213 (24%), Positives = 97/213 (45%), Gaps = 9/213 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKI--GDFCTLFVETHMRQDQI 58
           MI  +KG ++ L   Y  I+  G+ Y +    +T   L  +   +     +   M +   
Sbjct: 1   MISGLKGTLKKLEVGYAHIETGGITYEVTISFKTYLELKSLPSHNEVQFQIFHAMNERGQ 60

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
           +LFGFL++ D+++F +++ +QG+G   A+ +LS  +A EL        +K + +IP +  
Sbjct: 61  KLFGFLTEQDKEFFKVIKGLQGIGELTALKILSFFSAEELYRIAQSGEAKELEKIPKVKG 120

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVN------KEQAHICSMPSFAINAISALVNLGY 172
           K + +I  E+K     L   +       +       E     ++      AI  LV LG+
Sbjct: 121 KTSEKIFFEVKQNLKKLELFLSGTSKEPSISLSSFSETPEEAALSRKREIAILGLVQLGF 180

Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
            +  A+  V  +LK   +  D  +IIR  L+++
Sbjct: 181 EEKTASKEVDKILKSS-SPTDPGEIIREILKSL 212


>gi|171742914|ref|ZP_02918721.1| hypothetical protein BIFDEN_02031 [Bifidobacterium dentium ATCC
           27678]
 gi|171278528|gb|EDT46189.1| hypothetical protein BIFDEN_02031 [Bifidobacterium dentium ATCC
           27678]
          Length = 202

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 95/206 (46%), Gaps = 14/206 (6%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64
           + G +E +     LI+V GV Y    P   L+ +   G    ++   ++ QD I LFGFL
Sbjct: 2   LHGRVESVDMSSALIEVGGVGYETRMPSADLASMHA-GQEVKVYTSLNVSQDAITLFGFL 60

Query: 65  SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           +   ++ F+ LQ V G+G +VA+ +LS +    L  ++   ++  +A+ PG+  K A +I
Sbjct: 61  TPASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLAHAVADGDATALAKAPGLGKKGAQKI 120

Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV 184
           + ELKG            +              + +   +  L++LG+ Q  A  AV  V
Sbjct: 121 ILELKGSIDLSQIETAASVIS--------RPEDTGSEQVVEGLISLGWRQQDALHAVQEV 172

Query: 185 LKKEK-----NIADDSQIIRLALRAI 205
            +        +  D  ++++LAL ++
Sbjct: 173 CRSNDIATPLSNEDVPRVLKLALTSL 198


>gi|281412224|ref|YP_003346303.1| Holliday junction DNA helicase RuvA [Thermotoga naphthophila
           RKU-10]
 gi|281373327|gb|ADA66889.1| Holliday junction DNA helicase RuvA [Thermotoga naphthophila
           RKU-10]
          Length = 188

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 102/207 (49%), Gaps = 22/207 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I G +     + +L++   GV + I C ++T   + K G+ C L    ++ QD I 
Sbjct: 1   MIAGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTSEEV-KEGEECFLHTFLNVSQDGIT 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF ++  ++ F+ L  V  +G + A+ ++S   A  LV  I  Q+ + ++++PGIS K
Sbjct: 60  LYGFSNERKKELFLSLTKVSRLGPKTALKIISNEDAETLVTMIASQDVEGLSKLPGISKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ ELK                  + ++           ++ ALV+LGY + QA  
Sbjct: 120 TAERIVMELKD-----------------EFESAGIKDMRIYHESLEALVSLGYPEKQARE 162

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV  V ++       S++I+ AL+ +S
Sbjct: 163 AVKHVYREGMK---TSELIKEALKFLS 186


>gi|317009536|gb|ADU80116.1| Holliday junction DNA helicase RuvA [Helicobacter pylori India7]
          Length = 183

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +    V I+ QGV Y +   +RT + L + G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEVHIEAQGVVYGVQVSMRT-AALLQAGQKARLKILQVIKEDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETSPVRNEVFLALESLGFKSAE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INKVLKTLKPNLSIEAAIKEALQQL 181


>gi|284991600|ref|YP_003410154.1| Holliday junction DNA helicase RuvA [Geodermatophilus obscurus DSM
           43160]
 gi|284064845|gb|ADB75783.1| Holliday junction DNA helicase RuvA [Geodermatophilus obscurus DSM
           43160]
          Length = 212

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 59/211 (27%), Positives = 102/211 (48%), Gaps = 8/211 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +  +  D  +++V GV   + C   T++ L ++G+   L     +R+D + L
Sbjct: 1   MIASVNGRVAAVSPDGAVVEVGGVGLAVQCTPGTIARL-QVGESARLATSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  D +RQ F LLQ+  GVG R+A  VL+     E+  ++ + + K + Q+PGI  K 
Sbjct: 60  YGFADDDERQLFELLQTANGVGPRLAQAVLAIHPPREVRRAVSMADVKALMQVPGIGKKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ EL+ +    S+  Q D +      A     P +     SALV LG+   +A  A
Sbjct: 120 AERLILELRDRLGVTSTDTQLDGAAPAGLPAVTPVAP-WRDQLASALVGLGWTGKEADAA 178

Query: 181 VVSVLK------KEKNIADDSQIIRLALRAI 205
           +  +              + + ++R ALR +
Sbjct: 179 IGQLAPLADEQVTSTGSVEVAVLLRQALRLL 209


>gi|145628663|ref|ZP_01784463.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae 22.1-21]
 gi|144979133|gb|EDJ88819.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae 22.1-21]
          Length = 124

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 63/119 (52%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG+++G +       +L++VQGV Y +  P+ +   L +IG   TLF    +R+D   L
Sbjct: 1   MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           FGF    DR  F  L    GVG ++A+ +LS ++  +   +I  +    + +IPG+  K
Sbjct: 61  FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKK 119


>gi|61657364|emb|CAI44281.1| holliday junction DNA helicase [Thermotoga naphthophila RKU-10]
          Length = 191

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 102/207 (49%), Gaps = 22/207 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I G +     + +L++   GV + I C ++T   + K G+ C L    ++ QD I 
Sbjct: 4   MIAGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTSEEV-KEGEECFLHTFLNVSQDGIT 62

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF ++  ++ F+ L  V  +G + A+ ++S   A  LV  I  Q+ + ++++PGIS K
Sbjct: 63  LYGFSNERKKELFLSLTKVSRLGPKTALKIISNEDAETLVTMIASQDVEGLSKLPGISKK 122

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ ELK                  + ++           ++ ALV+LGY + QA  
Sbjct: 123 TAERIVMELKD-----------------EFESAGIKDMRIYHESLEALVSLGYPEKQARE 165

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV  V ++       S++I+ AL+ +S
Sbjct: 166 AVKHVYREGMK---TSELIKEALKFLS 189


>gi|126696254|ref|YP_001091140.1| putative holliday junction DNA helicase RuvA [Prochlorococcus
           marinus str. MIT 9301]
 gi|166230582|sp|A3PCR4|RUVA_PROM0 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|126543297|gb|ABO17539.1| putative holliday junction DNA helicase RuvA [Prochlorococcus
           marinus str. MIT 9301]
          Length = 225

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 53/218 (24%), Positives = 112/218 (51%), Gaps = 15/218 (6%)

Query: 1   MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLGKIG---DFCTLFVETHM 53
           MI  I G++  L++     +VLI+ QG+ Y I         L K        TL+V+   
Sbjct: 1   MISWINGDLVDLWQTNQKFFVLINCQGLGYEIQILESFFLKLRKNQISTKNITLWVKHIK 60

Query: 54  RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113
           ++D   LFGF S+  + +F+ + S++GVG+++ +G+L++ + +E++ +I  Q+ K+I  +
Sbjct: 61  KEDSDLLFGFTSNEQKNFFIEILSIRGVGSQIGIGILNKFSISEVINAIKTQDKKLICSV 120

Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           PGI  K++ R++ ELK K    S ++ ++     + +     +     +    L +L Y 
Sbjct: 121 PGIGQKMSERLILELKSKFK--SEILSEEEKSKGELEIKDPEINKMIEDLQLTLQSLSYK 178

Query: 174 QDQATTAVVSVLKK------EKNIADDSQIIRLALRAI 205
             +    +  ++K+      ++N     ++++LA+R +
Sbjct: 179 NKEINNILPIIIKEIDLLGKKENNLSFEKLLKLAMRYL 216


>gi|57167798|ref|ZP_00366938.1| Holliday junction DNA helicase RuvA [Campylobacter coli RM2228]
 gi|305432180|ref|ZP_07401344.1| crossover junction ATP-dependent DNA helicase RuvA [Campylobacter
           coli JV20]
 gi|57020920|gb|EAL57584.1| Holliday junction DNA helicase RuvA [Campylobacter coli RM2228]
 gi|304444723|gb|EFM37372.1| crossover junction ATP-dependent DNA helicase RuvA [Campylobacter
           coli JV20]
          Length = 183

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 51/207 (24%), Positives = 97/207 (46%), Gaps = 25/207 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           M+  I+G I      + +I    G+ Y ++  +   + L +      LF+   +++D  +
Sbjct: 1   MVVAIEGIITKKEPTFAIIKCASGLSYGVFISLFCAAKL-ETHQKYELFITQIIKEDSNK 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
            +GFL   +++ F +L  V GVGA  AM + S +      +++ L +  V+ ++PGI  K
Sbjct: 60  FYGFLDKDEQKMFEMLLKVNGVGASTAMAICSSLDVNSFYKALNLGDESVLKKVPGIGPK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ EL    + L SV                        A++AL++LG+ QD+  +
Sbjct: 120 SAKRIIVELGDAKVQLESV------------------SDDKSEALAALLSLGFKQDKILS 161

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
            + +      N  D S++I+ AL+ ++
Sbjct: 162 VLST-----CNGKDTSELIKEALKKLA 183


>gi|183220888|ref|YP_001838884.1| Holliday junction DNA helicase RuvA [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189910985|ref|YP_001962540.1| Holliday junction specific DNA binding protein [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|229560095|sp|B0SGZ5|RUVA_LEPBA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560096|sp|B0SQF0|RUVA_LEPBP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|167775661|gb|ABZ93962.1| Holliday junction specific DNA binding protein [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167779310|gb|ABZ97608.1| Holliday junction DNA helicase RuvA [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 199

 Score =  117 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 50/201 (24%), Positives = 87/201 (43%), Gaps = 9/201 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIR-TLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  ++G +  L  D ++++V GV Y +  P    L C  K+     +     +     R
Sbjct: 1   MIASLRGKLLQLEIDRLVVEVSGVGYEVMIPFPLHLECKDKLNTEIYIHTFHSITDRGQR 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF S  DR+ F L++S+ G+G   A+ +LS   A +L +     + K + +IP +  K
Sbjct: 61  LFGFGSKKDRESFELIKSLHGIGELTALKILSFFQADDLYQIAKADDKKTLEKIPKVKGK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            + +I+ E+K         + +  +  +               A  AL+ LG+ +  AT 
Sbjct: 121 TSEKILFEIKQNLKKFEMFLNEGTTESSFVDRETDL-------ATLALIQLGFDEKSATK 173

Query: 180 AVVSVLKKEKNIADDSQIIRL 200
            V    KK       S I++ 
Sbjct: 174 QVADA-KKLNPGLSASDIVKQ 193


>gi|58698305|ref|ZP_00373222.1| Holliday junction DNA helicase RuvA, putative [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|225630965|ref|YP_002727756.1| Holliday junction DNA helicase RuvA [Wolbachia sp. wRi]
 gi|254767402|sp|C0R4X3|RUVA_WOLWR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|58535178|gb|EAL59260.1| Holliday junction DNA helicase RuvA, putative [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|225592946|gb|ACN95965.1| Holliday junction DNA helicase RuvA [Wolbachia sp. wRi]
          Length = 190

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 62/208 (29%), Positives = 114/208 (54%), Gaps = 22/208 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMR--QDQI 58
           MIG + G ++ +  D+++++V  V Y++Y   +TLS    IG    L +ET+    ++  
Sbjct: 1   MIGNLSGIVDEVRSDHIILNVNDVGYMVYLSAKTLSA-CAIGSRIKLLIETYANNRENTT 59

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
           +L+GF+S+ ++Q   LL  V GV  + AM +LS++T  +L  +I+ ++   + ++ G+ +
Sbjct: 60  QLYGFISEEEQQCLRLLVKVSGVSYKTAMSILSKLTPEQLFLAIMNEDKVTL-KMSGLGL 118

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K+ +RI+TEL GK   L              + +  +      +A+SAL+NLGY + +A 
Sbjct: 119 KLINRIITELSGKVSKL--------------EINNNNFHPINEDALSALINLGYEKMKAY 164

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
             +    KK +   D   IIR+AL+ +S
Sbjct: 165 DTI----KKYRPNLDTKDIIRMALKELS 188


>gi|300768015|ref|ZP_07077921.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|300494364|gb|EFK29526.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
          Length = 220

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 89/205 (43%), Gaps = 7/205 (3%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
                G +  +   YV+I+V G+ Y +         +G       +++   + ++ + LF
Sbjct: 19  YEYFLGQVTDVTPGYVVIEVSGIGYKVLTANPYRYQVGPT--AVKMYIHQAVSENGMSLF 76

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF    ++  F  L  V G+G + A+ +L+      L+++I  +N+  +   PG+  K A
Sbjct: 77  GFFDADEKALFEKLLGVSGIGPKSALAILANNDHAGLIQAINQENATYLTSFPGVGKKTA 136

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
            +I+ +LKGK   L+     D++          ++     +A++AL  LGY +       
Sbjct: 137 QQIVLDLKGKLNDLN----VDVTGQTALDVDAPAVDGALADALAALEALGYSKADVKKVT 192

Query: 182 VSVLK-KEKNIADDSQIIRLALRAI 205
             +    +   AD + ++   LR +
Sbjct: 193 KKLETFSQTQGADTNTLLSEGLRLL 217


>gi|300787173|ref|YP_003767464.1| holliday junction DNA helicase RuvA [Amycolatopsis mediterranei
           U32]
 gi|299796687|gb|ADJ47062.1| holliday junction DNA helicase RuvA [Amycolatopsis mediterranei
           U32]
          Length = 198

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 100/205 (48%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+V+++V GV + +     TL+ L + G+   L     +R+D + L
Sbjct: 1   MISSVRGEVLIVGLDHVVVEVGGVGFAVQATPATLATL-RRGEEARLHTALVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF     R+ F LLQ+V G+G R+A+  L+ +   +L  +++  N  V+  +PGI  K 
Sbjct: 60  FGFADADARELFGLLQTVSGIGPRLALATLAVLDPGKLRAALVEGNITVLTSVPGIGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+  EL+ K  +L+                + +  +     + AL  LG+   QA  A
Sbjct: 120 AERLTLELRDKVTALAGTGDVPA---------VTAPGALRAEVVEALAGLGFPAKQAEQA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  VL  + +    + ++R AL  +
Sbjct: 171 VDKVLA-DGDGHTTAGVLRAALATL 194


>gi|154249486|ref|YP_001410311.1| Holliday junction DNA helicase RuvA [Fervidobacterium nodosum
           Rt17-B1]
 gi|171769439|sp|A7HL71|RUVA_FERNB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|154153422|gb|ABS60654.1| Holliday junction DNA helicase RuvA [Fervidobacterium nodosum
           Rt17-B1]
          Length = 188

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 20/206 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G  +G  E  +L+ + GV + I     + S   + GD   ++ +  + Q+ + +
Sbjct: 1   MIEIIEGIYKGRSEGKILVSINGVVFGIITDAESFSEFNE-GDKILVYTKLIVSQEDMTI 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S + ++ F  L  V  +G + A+ +LS  T   L  +I   + + ++ IPGI  K 
Sbjct: 60  YGFDSKVKKETFEKLIKVSKLGPKTAIKILSSTTVDFLSNAIATGDVEKLSSIPGIGRKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++TELK +   +    +                      AI ALV+LGY + QA  A
Sbjct: 120 AERMITELKDEFEVVEVNEEMLE-------------------AIEALVSLGYSKTQARNA 160

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  VLK+  NI++ S+II+ AL+ ++
Sbjct: 161 VSKVLKESPNISNVSKIIKEALKILA 186


>gi|225164626|ref|ZP_03726870.1| Holliday junction resolvasome DNA-binding subunit-like protein
           [Opitutaceae bacterium TAV2]
 gi|224800771|gb|EEG19123.1| Holliday junction resolvasome DNA-binding subunit-like protein
           [Opitutaceae bacterium TAV2]
          Length = 219

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 69/154 (44%), Gaps = 1/154 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  I+G +        ++++ G  Y +  P+ T   L  +G    L      R+D   L
Sbjct: 1   MITSIQGLLTEATPLRAVVEINGFGYEVNIPVTTAEKLPAVGAKVKLHTIVIYREDAQTL 60

Query: 61  FGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +GF S  +R +F L+   V GVG ++A+ ++SR++   L  +I   +   +++ PGI  K
Sbjct: 61  YGFASPEERDFFRLMIEQVSGVGPKLALTIMSRMSLPVLEGAIRAGDISSLSKCPGIGKK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI 153
            A R++ EL+ K  +  +                
Sbjct: 121 TAERLVVELRAKVGASPAGGDAGSPVAGDGGTSS 154


>gi|42520918|ref|NP_966833.1| Holliday junction DNA helicase RuvA [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|99035955|ref|ZP_01315000.1| hypothetical protein Wendoof_01000161 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
 gi|81652227|sp|Q73G51|RUVA_WOLPM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|42410659|gb|AAS14767.1| Holliday junction DNA helicase RuvA [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 190

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 60/208 (28%), Positives = 112/208 (53%), Gaps = 22/208 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMR--QDQI 58
           MIG + G ++ +  D+++++V  V Y++Y   +TL+    IG    L +ET+    ++  
Sbjct: 1   MIGNLSGIVDEVRSDHIILNVNDVGYMVYLSAKTLNA-CSIGSRVKLLIETYANNRENVA 59

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
           +L+GF+S  ++Q   LL  V GV  + AM +L ++T  +L  +I+ ++   + ++ G+ +
Sbjct: 60  QLYGFISKEEQQCLRLLVKVSGVSYKTAMSILGKLTPEQLFLAIMNEDKVAL-KMSGLGL 118

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K+ +RI+TEL GK   L              + +  +      +A+SAL+NLGY + +A 
Sbjct: 119 KLINRIITELSGKVSKL--------------EINNNNFHPINEDALSALINLGYEKMKAY 164

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
             +    KK +   D   IIR+AL+ +S
Sbjct: 165 DTI----KKYRPNLDTKDIIRMALKELS 188


>gi|199598072|ref|ZP_03211495.1| Holliday junction resolvasome, DNA-binding subunit [Lactobacillus
           rhamnosus HN001]
 gi|258507747|ref|YP_003170498.1| Holliday junction DNA helicase RuvA [Lactobacillus rhamnosus GG]
 gi|258538937|ref|YP_003173436.1| Holliday junction DNA helicase RuvA [Lactobacillus rhamnosus Lc
           705]
 gi|84627155|gb|ABC59820.1| RuvA [Lactobacillus rhamnosus GG]
 gi|199590998|gb|EDY99081.1| Holliday junction resolvasome, DNA-binding subunit [Lactobacillus
           rhamnosus HN001]
 gi|257147674|emb|CAR86647.1| Holliday junction DNA helicase RuvA [Lactobacillus rhamnosus GG]
 gi|257150613|emb|CAR89585.1| Holliday junction DNA helicase RuvA [Lactobacillus rhamnosus Lc
           705]
 gi|259649095|dbj|BAI41257.1| holliday junction DNA helicase RuvA [Lactobacillus rhamnosus GG]
          Length = 198

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 94/206 (45%), Gaps = 11/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G I+ +   Y++IDV G+ + +           + G    ++V+  +R++   L
Sbjct: 1   MYEYFEGTIQAVTPAYIVIDVNGIGFRLLV-ANPYDF--EAGKQTRIYVQLIIRENDQTL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  D++ F  L SV G+G + A+ +L+ +++  L  +I   + K + + PGI  K 
Sbjct: 58  YGFETAADKRTFNQLLSVTGIGPKSALAILANVSSGGLATAIAQDDVKFLTKFPGIGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A++I+ +LKGK  + +      +     + A   +    A+ A+      GY Q      
Sbjct: 118 AAQIILDLKGKITTDAQPAAATIMPTADQVAPELADALAALVAL------GYTQRAVDGI 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
             ++  K  +       +R  LR +S
Sbjct: 172 TDAL--KAFDATTTDAYLREGLRLLS 195


>gi|83590537|ref|YP_430546.1| Holliday junction DNA helicase subunit RuvA [Moorella thermoacetica
           ATCC 39073]
 gi|123725675|sp|Q2RHT6|RUVA_MOOTA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|83573451|gb|ABC20003.1| Holliday junction DNA helicase subunit RuvA [Moorella thermoacetica
           ATCC 39073]
          Length = 202

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/203 (22%), Positives = 94/203 (46%), Gaps = 9/203 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG ++G +  +  + +L++  G+ +++     T       G    ++ +  +R+D + L
Sbjct: 1   MIGYLRGRLHLVTPEGILLETGGIGWLVRT--VTNRSWPAPGTEIAVYTQLVVREDAMEL 58

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +   F LL+ V G+G R A+ +L      +L  +I   +S  +  +PGI  K 
Sbjct: 59  YGFTRPEELHLFTLLRGVNGIGPRGALQILGAAKPEQLSRAIAAGDSAFLTALPGIGAKK 118

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK   +    V   +          I +       A++AL+ LGY +++    
Sbjct: 119 AQRLLLELKDAVLKSGLVDGTETEA-------IPAGGGDNDEALAALLALGYSREEIGPI 171

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
           +  V ++  N A  + +++  L+
Sbjct: 172 LARVRQELGNAAPTTAVLQAVLK 194


>gi|320537837|ref|ZP_08037755.1| Holliday junction DNA helicase RuvA [Treponema phagedenis F0421]
 gi|320145314|gb|EFW37012.1| Holliday junction DNA helicase RuvA [Treponema phagedenis F0421]
          Length = 203

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/211 (25%), Positives = 99/211 (46%), Gaps = 16/211 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +     + + I+  G+ + +    ++L   G +G    +F   + R+DQ+RL
Sbjct: 1   MFNSINGVLTEKSSESICIETHGIEWSVAVSAKSLDSFGMVGATVRVFTWLYHREDQMRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F+ L  V G+G + A+ +LS ITA  L  ++   +  ++  IPG+  K 
Sbjct: 61  FGFPTREERALFLDLIKVDGIGPKQALRILSGITAENLETALEEGDVHLLQTIPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +++  LKG+  ++  + +                 S   + I ALV +GY +  AT  
Sbjct: 121 AQKMVLALKGQLSNIHEIGKS-----------ASIPQSEFEDIIQALVQMGYDRKAATEQ 169

Query: 181 VVSVL-----KKEKNIADDSQIIRLALRAIS 206
           V +       K      +++++ R A+ A+S
Sbjct: 170 VEAAASALRSKGANPQENENELFRSAIVALS 200


>gi|302527851|ref|ZP_07280193.1| Holliday junction DNA helicase RuvA [Streptomyces sp. AA4]
 gi|302436746|gb|EFL08562.1| Holliday junction DNA helicase RuvA [Streptomyces sp. AA4]
          Length = 198

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 11/205 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+V+++V GV   +     TL+ L + G+   L     +R+D + L
Sbjct: 1   MISSVRGEVLSVGLDHVVVEVGGVGLAVQATPATLATL-RRGEQTRLHTALVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF  +  R+ F LLQ+V G+G R+A+  L+ +   +L  +++  N  V+ Q+PGI  K 
Sbjct: 60  FGFAEEDARELFGLLQTVSGIGPRLALATLAVLEPDKLRAALVEGNITVLTQVPGIGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+  EL+ K  +L       +         + +  +     + AL  LG+   QA  A
Sbjct: 120 AERLSLELRDKVTALGGASDAPV---------VTAPGALRGEVVEALAGLGFPAKQAEQA 170

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  VL  E +    S ++R AL A+
Sbjct: 171 VDKVL-SEGDGHTTSSVLRAALAAL 194


>gi|206901849|ref|YP_002251320.1| holliday junction DNA helicase RuvA [Dictyoglomus thermophilum
           H-6-12]
 gi|206740952|gb|ACI20010.1| holliday junction DNA helicase RuvA [Dictyoglomus thermophilum
           H-6-12]
          Length = 193

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 54/204 (26%), Positives = 97/204 (47%), Gaps = 20/204 (9%)

Query: 4   KIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIRLFG 62
            I G +  + ED+V++D     + IY        L + +GD   L+V   + +D ++LFG
Sbjct: 6   HIYGKLLRIAEDFVVVDTGAFGFKIYIGKNLALKLNEKLGDNVLLYVAEVIEKDNVKLFG 65

Query: 63  FLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIAS 122
           FLS+ +R  F  L+++ GVG ++A+ ++S +   E  E +  ++   +  IPGI  KIA 
Sbjct: 66  FLSEEERDLFESLKNITGVGVKIALRIVSTLPPKEFYEVLEKEDLNTLLNIPGIGKKIAQ 125

Query: 123 RIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVV 182
           +I  E+KG                                  +AL+NLGY +      + 
Sbjct: 126 KIFLEIKGVIPK-------------------RVYNDEENVIKNALLNLGYDKKDIELVMR 166

Query: 183 SVLKKEKNIADDSQIIRLALRAIS 206
            + K+ K++ +  +II+ AL+ +S
Sbjct: 167 DIRKEFKSLDNLEEIIKFALKRLS 190


>gi|217967994|ref|YP_002353500.1| DNA recombination protein RuvA domain I [Dictyoglomus turgidum DSM
           6724]
 gi|217337093|gb|ACK42886.1| DNA recombination protein RuvA domain I [Dictyoglomus turgidum DSM
           6724]
          Length = 192

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/204 (24%), Positives = 97/204 (47%), Gaps = 21/204 (10%)

Query: 4   KIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIRLFG 62
            I G +  ++ D ++ID     + IY      S L  ++ +   L++   + +D I+ FG
Sbjct: 6   HIYGKLLKIHGDSLIIDTGNFGFKIYVSKNLTSKLSEELNNKILLYIAEVIEKDGIKFFG 65

Query: 63  FLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIAS 122
           FLS+ +R  F  L+++ GVG ++A+ ++S ++  E  E I  ++   +  +PG+  KI  
Sbjct: 66  FLSEEERDLFERLKNITGVGIKIALRIVSAMSPKEFYEVIEKEDLNALLMVPGVGKKITQ 125

Query: 123 RIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVV 182
           +I  E+KG         +  +                       L+NLGY +++    + 
Sbjct: 126 KIFLEIKGVIPKREHKEEDIIK--------------------DTLLNLGYKKEEIEVVMK 165

Query: 183 SVLKKEKNIADDSQIIRLALRAIS 206
            + K+ K++ +  +IIR ALR +S
Sbjct: 166 EIRKEFKDLDNLEEIIRFALRKLS 189


>gi|223040201|ref|ZP_03610480.1| holliday junction DNA helicase RuvA [Campylobacter rectus RM3267]
 gi|222878562|gb|EEF13664.1| holliday junction DNA helicase RuvA [Campylobacter rectus RM3267]
          Length = 184

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 94/207 (45%), Gaps = 24/207 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I+G I       +++    GV Y +   +   + L + G    L +   +R+D   
Sbjct: 1   MIKAIEGVITKKEPANLILKTAGGVSYGVAISLFCSAKL-ERGQSVELNITQIIREDADL 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL   +++ F  L  + G+GA  AM V S +     + ++   ++  +  +PGI  K
Sbjct: 60  LYGFLDSNEQKMFETLIKLSGIGAATAMAVCSSLNPNAFLNAVKSGDAAALQTVPGIGAK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ EL    +++   +                 PS+   AI AL +LG+ +++ T 
Sbjct: 120 TARRIIAELSDAKMTMDENL-----------------PSYQHEAILALESLGFKREKITK 162

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           A+      E +  +  ++++ AL+ ++
Sbjct: 163 ALS-----ECDAQNTGELVKQALKKLA 184


>gi|312880160|ref|ZP_07739960.1| DNA recombination protein RuvA domain I [Aminomonas paucivorans DSM
           12260]
 gi|310783451|gb|EFQ23849.1| DNA recombination protein RuvA domain I [Aminomonas paucivorans DSM
           12260]
          Length = 198

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 79/196 (40%), Gaps = 11/196 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E   +  + IDV G    ++     L    + G    L  +  +      L
Sbjct: 1   MIRSLSGVVESARDGALWIDVNGFGLEVFASRTVLEQ-AEEGHPLRLLAQLILTDSGPSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + +R+ F  L  V+ +G R+AM +L   +  ELV +I  Q+   + + PG+  K 
Sbjct: 60  YGFGGEEERRLFQELIQVKNIGGRMAMALLRVFSVAELVAAIRAQDVASLGRAPGVGAKR 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  EL+ K   L      +             + +   +   AL  LG+ +  A +A
Sbjct: 120 AERICFELRPKLDRLFGTAAGETG----------PLEAGVESLADALEGLGFSRSTARSA 169

Query: 181 VVSVLKKEKNIADDSQ 196
           +    +  +      +
Sbjct: 170 LEEARRSLEGEEPAEE 185


>gi|24215603|ref|NP_713084.1| Holliday junction DNA helicase RuvA [Leptospira interrogans serovar
           Lai str. 56601]
 gi|24196756|gb|AAN50102.1| holliday junction DNA helicase RuvA [Leptospira interrogans serovar
           Lai str. 56601]
          Length = 212

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/213 (23%), Positives = 97/213 (45%), Gaps = 9/213 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIG--DFCTLFVETHMRQDQI 58
           MI  +KG ++ L   +V I+  G+ Y +    +T   L  +       L +   + +   
Sbjct: 1   MISGLKGTLKKLEVGFVHIETGGITYEVTISFKTYLELKNLPLLKEVQLQIFHSINERGQ 60

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
           +LFGFL++ D+++F +++ +QG+G   A+ +LS  +A +L   +    +K + +IP +  
Sbjct: 61  KLFGFLTEQDKEFFKVMKGLQGIGELTALKILSFFSAEDLYRIVQSGEAKELEKIPKVKG 120

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF------AINAISALVNLGY 172
           K + +I  E+K     L   +       +     +   P            I  LV LG+
Sbjct: 121 KTSEKIFFEVKQNLKKLELFLSGSSKESSVILTSLLQSPEEMAFSKKRETVILGLVQLGF 180

Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
            +  A+  V  VLK   +  D  +IIR  L+++
Sbjct: 181 EEKTASKEVDKVLKIFSSN-DPGEIIREILKSL 212


>gi|33861499|ref|NP_893060.1| putative holliday junction DNA helicase RuvA [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
 gi|44888410|sp|Q7V1D3|RUVA_PROMP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|33634076|emb|CAE19401.1| putative holliday junction DNA helicase RuvA [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 219

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 99/218 (45%), Gaps = 15/218 (6%)

Query: 1   MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLGKIG---DFCTLFVETHM 53
           MI  IKG +   ++     Y+L++ QG+ Y I         +           L+++   
Sbjct: 1   MISWIKGELVSSWQANNKFYILVNCQGLGYEIQTLESVFFDINSNKISEKEIILWLKHIK 60

Query: 54  RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113
           ++D   LFGF +   R +F+ + +++G+G+++ M +L++ +  +L+ +I   + K I+ +
Sbjct: 61  KEDSDMLFGFSTKDQRDFFIQILNIKGIGSQIGMSLLNKFSLNQLITAISNNDKKSISTV 120

Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
            GI  K+  RI+ ELK K   ++  ++++   +N        + S   +    L +L Y 
Sbjct: 121 QGIGQKMTERIILELKSKV--INKEIEKENLNINNFLEKNKDLDSIFKDIDLTLQSLNYS 178

Query: 174 QDQATTAVVSVLKK------EKNIADDSQIIRLALRAI 205
           + +       ++        EK       +++ A+  +
Sbjct: 179 KKEIKNLFPKLINNIKNSSLEKESISFENLLKEAMNYL 216


>gi|325295513|ref|YP_004282027.1| Holliday junction ATP-dependent DNA helicase ruvA
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065961|gb|ADY73968.1| Holliday junction ATP-dependent DNA helicase ruvA
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 188

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 86/206 (41%), Gaps = 22/206 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG +   Y D + +    + + ++ P+  L+ + +          T   +    L
Sbjct: 1   MIDYLKGKVIFKYSDSISLLCGSIAFRVFVPLNLLTEIREGDKVALFVKFTLPSEGTPSL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R +F  L  +  VG++VAM V+S  +  EL   +  ++ K ++ +PG+  K+
Sbjct: 61  YGFKTREERVFFEELLKIPKVGSKVAMSVISHFSLDELRNIVSTKDVKTLSTVPGLGKKL 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           + R++ ELK K I                        +     +  L  L Y + +   A
Sbjct: 121 SERVILELKDKPI-------------------FGEERNIPSELLEILTALSYSRKEVVKA 161

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  +   +       ++++  ++ +S
Sbjct: 162 VEGI---DLKDRSIEELVKEVVKKLS 184


>gi|229553780|ref|ZP_04442505.1| crossover junction endoribonuclease subunit A [Lactobacillus
           rhamnosus LMS2-1]
 gi|229312854|gb|EEN78827.1| crossover junction endoribonuclease subunit A [Lactobacillus
           rhamnosus LMS2-1]
          Length = 212

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 94/206 (45%), Gaps = 11/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G I+ +   Y++IDV G+ + +           + G    ++V+  +R++   L
Sbjct: 15  MYEYFEGTIQAVTPAYIVIDVNGIGFRLLV-ANPYDF--EAGKQTRIYVQLIIRENDQTL 71

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  D++ F  L SV G+G + A+ +L+ +++  L  +I   + K + + PGI  K 
Sbjct: 72  YGFETAADKRTFNQLLSVTGIGPKSALAILANVSSGGLATAIAQDDVKFLTKFPGIGKKT 131

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A++I+ +LKGK  + +      +     + A   +    A+ A+      GY Q      
Sbjct: 132 AAQIILDLKGKITTDAQPAAATIMPTADQVAPELADALAALVAL------GYTQRAVDGI 185

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
             ++  K  +       +R  LR +S
Sbjct: 186 TDAL--KAFDATTTDAYLREGLRLLS 209


>gi|45657032|ref|YP_001118.1| DNA helicase subunit A [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|81407392|sp|Q72T73|RUVA_LEPIC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|45600269|gb|AAS69755.1| DNA helicase subunit A [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 212

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/213 (23%), Positives = 95/213 (44%), Gaps = 9/213 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIG--DFCTLFVETHMRQDQI 58
           MI  +KG +  L   +V I+  G+ Y +    +T   L  +       L +   + +   
Sbjct: 1   MISGLKGILRKLEVGFVHIETGGITYEVTISFKTYLELKNLPLLKEVQLQIFHSINERGQ 60

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
           +LFGFL++ D+++F +++ +QG+G   A+ +LS  +A +L   +     K + +IP +  
Sbjct: 61  KLFGFLTEQDKEFFKVMKGLQGIGELTALKILSFFSAEDLYRIVQSGEVKELEKIPKVKG 120

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF------AINAISALVNLGY 172
           K + +I  E+K     L   +       +     +   P            I  LV LG+
Sbjct: 121 KTSEKIFFEVKQNLKKLELFLSGSSKESSVILTSLLQSPEEMAFSKKRETVILGLVQLGF 180

Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
            +  A+  V  VLK   +  D  +IIR  L+++
Sbjct: 181 EEKTASKEVDKVLKIFSSN-DPGEIIREILKSL 212


>gi|322378554|ref|ZP_08053000.1| Holliday junction DNA helicase motor protein [Helicobacter suis
           HS1]
 gi|322380312|ref|ZP_08054527.1| Holliday junction DNA helicase motor protein [Helicobacter suis
           HS5]
 gi|321147264|gb|EFX41949.1| Holliday junction DNA helicase motor protein [Helicobacter suis
           HS5]
 gi|321149016|gb|EFX43470.1| Holliday junction DNA helicase motor protein [Helicobacter suis
           HS1]
          Length = 183

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 87/205 (42%), Gaps = 23/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G I  +   ++ +++ GV Y ++          +      L     +++D   L
Sbjct: 1   MIVGLRGIILQVLPTFIELEINGVVYGVHV---RAGENFESKQEVFLHTAQIIKEDGHSL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL   +++ F  L  V GVG RVA+ +LS  +  +    I  ++ K + ++PG+  K+
Sbjct: 58  YGFLQRTEKELFERLLKVNGVGPRVALAILSTYSCADFSVCIQSKDLKALQRVPGVGAKL 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  +                Q       +    A+  L +LG+   +A   
Sbjct: 118 AGKIMLDLAGLVL----------------QEETEIKDTAIEQAVLGLQSLGFKTTEAFK- 160

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +        D   +I+LAL+ +
Sbjct: 161 ---ICSNLPKGLDTPTLIKLALQQL 182


>gi|332298112|ref|YP_004440034.1| Holliday junction ATP-dependent DNA helicase ruvA [Treponema
           brennaborense DSM 12168]
 gi|332181215|gb|AEE16903.1| Holliday junction ATP-dependent DNA helicase ruvA [Treponema
           brennaborense DSM 12168]
          Length = 205

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 50/213 (23%), Positives = 97/213 (45%), Gaps = 15/213 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G I       + ++  G+ + I  P  TL  L  +G+   ++   + R+D ++L
Sbjct: 1   MFNSLYGTITAKLPQTIYLETDGIEWDIAVPDTTLDTLPPVGERARVYTWLYHREDAVKL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  DR  F+ L  V GVGA+ A+ ++S I   +LVE++  ++   + ++PG+  K 
Sbjct: 61  FGFATAADRLLFLDLLKVDGVGAKGALKIMSGIAPRQLVEALDSEDLSQLERLPGVGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A ++M  LKGK            +   +         +   + I+AL ++GY +      
Sbjct: 121 AQKMMLTLKGKL--------ALSADSGRGSVQRSPSAAKWQDVITALADMGYDKKVCEET 172

Query: 181 VVSVLK------KEKNIADDSQII-RLALRAIS 206
           +  +          KN A   +++ R A+  ++
Sbjct: 173 IDRLEPILAAELDGKNKATQEELMFRRAIVELA 205


>gi|6685946|sp|Q9WY12|RUVA_THEMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
          Length = 188

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 101/207 (48%), Gaps = 22/207 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I G +     + +L++   GV + I C ++T   + K G  C L     + QD I 
Sbjct: 1   MIAGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTSEEV-KEGGECFLHTFLSVSQDGIT 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +++ ++ F+ L  V  +G + A+ ++S   A  LV  I  Q+ + ++++PGIS K
Sbjct: 60  LYGFSNEMKKELFLSLTKVSRLGPKTALKIISNEDAETLVAMIASQDVEGLSKLPGISKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ ELK                  + ++           ++ ALV+LGY + QA  
Sbjct: 120 TAERIVMELKD-----------------EFESAGIKDMRIYHESLEALVSLGYPEKQARE 162

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV  V ++       S++I+ AL+ +S
Sbjct: 163 AVKQVYREGMK---TSELIKEALKFLS 186


>gi|15642939|ref|NP_227980.1| Holliday junction DNA helicase RuvA [Thermotoga maritima MSB8]
 gi|4980659|gb|AAD35258.1|AE001701_11 Holliday junction DNA helicase [Thermotoga maritima MSB8]
          Length = 191

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 101/207 (48%), Gaps = 22/207 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I G +     + +L++   GV + I C ++T   + K G  C L     + QD I 
Sbjct: 4   MIAGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTSEEV-KEGGECFLHTFLSVSQDGIT 62

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +++ ++ F+ L  V  +G + A+ ++S   A  LV  I  Q+ + ++++PGIS K
Sbjct: 63  LYGFSNEMKKELFLSLTKVSRLGPKTALKIISNEDAETLVAMIASQDVEGLSKLPGISKK 122

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ ELK                  + ++           ++ ALV+LGY + QA  
Sbjct: 123 TAERIVMELKD-----------------EFESAGIKDMRIYHESLEALVSLGYPEKQARE 165

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV  V ++       S++I+ AL+ +S
Sbjct: 166 AVKQVYREGMK---TSELIKEALKFLS 189


>gi|149175963|ref|ZP_01854580.1| probable holliday junction DNA helicase ruvA [Planctomyces maris
           DSM 8797]
 gi|148845117|gb|EDL59463.1| probable holliday junction DNA helicase ruvA [Planctomyces maris
           DSM 8797]
          Length = 206

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 15/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQD--- 56
           MI  I+G +  L     +I V    Y ++ P      L   IG   +L    ++  +   
Sbjct: 1   MITNIRGELIELSLTEAIISVGAFDYEVFIPEFVRRQLQPLIGSEISLKTIQYIEGNPQK 60

Query: 57  ---QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113
                RL GF+S  +R++F L+ SV GVG +  +  + R    E+  +I  ++ K +  +
Sbjct: 61  GRLTPRLIGFMSHAEREFFELVCSVDGVGVKKTLRAMVR-PVKEVATAIEEKDIKQLTTL 119

Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           PGI   +A RI+ +L+ K    + +V ++                    A  AL++LGY 
Sbjct: 120 PGIGPAVAERIVAKLRRKMTKFALIVAKEFPAEEGH-------TDVFSEAYEALLSLGYS 172

Query: 174 QDQATTAVVSVLKKEKNIADDSQII 198
             +A T V ++  + K      + +
Sbjct: 173 ATEARTKVETIAAEGKKFKSIEEFL 197


>gi|237752874|ref|ZP_04583354.1| holliday junction DNA helicase motor protein [Helicobacter
           winghamensis ATCC BAA-430]
 gi|229375141|gb|EEO25232.1| holliday junction DNA helicase motor protein [Helicobacter
           winghamensis ATCC BAA-430]
          Length = 193

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 90/206 (43%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQIR 59
           MI  ++G I       + +   GV Y ++  ++T   +   IG+   L     +R+D   
Sbjct: 1   MIIALEGEIFLKEPTRLGLKCTGVVYEVFISLQTSQQIQANIGEKLALHTTQIIREDAQM 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGFL  L++  F  L  + GVG +VAM +LS  T     + +   + K + ++PGI  K
Sbjct: 61  LFGFLELLEKTLFERLIKINGVGPKVAMAILSTYTPQTFAKVVESNDIKSMQRVPGIGPK 120

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ EL G ++ L            + ++      S     I AL +LGY  D    
Sbjct: 121 SAGRILVELSGWSLDL-----------VQGESLNVKKDSNLQQVILALESLGYKNDVIAR 169

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
               +   E      S +++ AL+ +
Sbjct: 170 VTKGLENDE-----VSAMVKAALKRL 190


>gi|189485463|ref|YP_001956404.1| Holliday junction resolvasome DNA-binding subunit RuvA [uncultured
           Termite group 1 bacterium phylotype Rs-D17]
 gi|254767397|sp|B1H0B1|RUVA_UNCTG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|170287422|dbj|BAG13943.1| Holliday junction resolvasome DNA-binding subunit RuvA [uncultured
           Termite group 1 bacterium phylotype Rs-D17]
          Length = 204

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 53/211 (25%), Positives = 103/211 (48%), Gaps = 13/211 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETH---MRQDQ 57
           MI  + G ++    D + IDV G+ Y I  PI T   L +  +   +++      M    
Sbjct: 1   MIDYLYGTLDSKSTDGITIDVNGIGYEISVPISTFLKLPETRNPIKIYIVESTAGMYGGV 60

Query: 58  IRLFGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRI--TATELVESIILQNSKVIAQIP 114
           I L+GF +  +R+ ++L++  V G+GA+ AM    +I  +      +II +N  ++ +I 
Sbjct: 61  ISLYGFFTIEEREMYLLIKDKVHGIGAKKAMEYTDKISKSFANFKTAIISKNPSMLNEIF 120

Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           G + K A +++  LK K  +++ + ++  +     +       +    AI+ L+ LGY  
Sbjct: 121 GFTKKTADKLIVALKDKISTVNVLNKEKQTGAETIK------NTMVSEAIAGLITLGYKM 174

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
            QA  AV +V +  +NI     +I+ +L+ +
Sbjct: 175 QQARVAVTNVYEHNENI-TLEDLIKKSLQYL 204


>gi|123968451|ref|YP_001009309.1| putative holliday junction DNA helicase RuvA [Prochlorococcus
           marinus str. AS9601]
 gi|166230584|sp|A2BQZ1|RUVA_PROMS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|123198561|gb|ABM70202.1| putative holliday junction DNA helicase RuvA [Prochlorococcus
           marinus str. AS9601]
          Length = 225

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 51/218 (23%), Positives = 111/218 (50%), Gaps = 15/218 (6%)

Query: 1   MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLGKIG---DFCTLFVETHM 53
           MI  I G++  L++     +VLI+ QG+ Y I         L          TL+++   
Sbjct: 1   MISWINGDLVDLWQTNQKSFVLINCQGLGYEIQILESFFLKLKTNQISTKNITLWIKHIK 60

Query: 54  RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113
           ++D   LFGF S   + +F+ + S++GVG+++ +G+L++ + +E++ +I  Q+ K+I  +
Sbjct: 61  KEDSDLLFGFTSKDQKNFFIEILSIRGVGSQIGIGILNKFSISEVINAIKTQDKKLICSV 120

Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           PGI  K++ R++ ELK K    S ++ ++    ++ +     +     +    L +L Y 
Sbjct: 121 PGIGQKMSERLILELKSKFK--SEILSEEEKSKDEFEIKDPEIIKMIEDLQLTLQSLSYK 178

Query: 174 QDQATTAVVSVLKK------EKNIADDSQIIRLALRAI 205
             +  T +  ++K+      ++N     ++++LA+  +
Sbjct: 179 NKEINTILPIIIKEIDHLGKKENSLSFEKLLKLAMHYL 216


>gi|315453042|ref|YP_004073312.1| holliday junction ATP-dependent DNA helicase [Helicobacter felis
           ATCC 49179]
 gi|315132094|emb|CBY82722.1| holliday junction ATP-dependent DNA helicase [Helicobacter felis
           ATCC 49179]
          Length = 181

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 91/205 (44%), Gaps = 25/205 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G++  +    + ++V+GV Y +   + T S L + G    L+     ++    L
Sbjct: 1   MIVGLIGHVHSIEPTLIALNVRGVVYGVQVSLHT-SSLLQEGQEVHLYTSLISKEGDQSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL   +R  F+ L  + GVG ++A+ +LS  T  E    +  Q++K + ++PG+  K+
Sbjct: 60  FGFLELEERALFVRLIKISGVGPKIALAILSVYTPLEFATLLETQHTKALQKVPGVGSKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+IM +L+G   S                          I A+ AL +LG+   +    
Sbjct: 120 ASKIMFDLEGYLPS-------------------AHQDPAYIQAVQALESLGFKSLEVQKV 160

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              +           ++I+ AL+ +
Sbjct: 161 CADL-----KGLSTEEMIKEALQKL 180


>gi|308271856|emb|CBX28464.1| Holliday junction ATP-dependent DNA helicase ruvA [uncultured
           Desulfobacterium sp.]
          Length = 204

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 50/203 (24%), Positives = 96/203 (47%), Gaps = 13/203 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG--KIGDFCTLFVETHMRQDQI 58
           MIG ++G +     + +L+ V  V Y I  P   +  L    +GD  TL++  H  + Q 
Sbjct: 1   MIGYLEGKLLKKDSERILLLVNHVGYEILLPAIVMETLNTRSVGDEITLYIYYHQSEKQP 60

Query: 59  R--LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
           +  L GF  ++++++F    SV+ +G   A+  L+ ++  ++  +I  +++  + Q+ GI
Sbjct: 61  KPVLIGFNLEVEKEFFQYFISVEDIGPLKAVKALT-MSVRDISRAIESKDAAALKQLKGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN-LGYGQD 175
             + A +I+  L+GK    + + + +       Q +           I  LV+ LGY   
Sbjct: 120 GNRTAQKIIATLEGKMNKFALIRKSE-------QTYDSVSEDIGQKVIDLLVSQLGYKPG 172

Query: 176 QATTAVVSVLKKEKNIADDSQII 198
           +A T VV  LK+ K I     ++
Sbjct: 173 EAKTMVVQALKRNKFITSPEDLL 195


>gi|148269895|ref|YP_001244355.1| Holliday junction DNA helicase RuvA [Thermotoga petrophila RKU-1]
 gi|166231455|sp|A5IKQ6|RUVA_THEP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|147735439|gb|ABQ46779.1| Holliday junction DNA helicase subunit RuvA [Thermotoga petrophila
           RKU-1]
          Length = 188

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 100/207 (48%), Gaps = 22/207 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I G +     + +L++   GV + I C ++T   + + G  C L     + QD I 
Sbjct: 1   MIAGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTSEEV-EEGGECFLHTFLSVSQDGIT 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF ++  ++ F+ L  V  +G + A+ ++S   A  LV  I  Q+ + ++++PGIS K
Sbjct: 60  LYGFSNERKKELFLSLTKVSRLGPKTALKIISNEDAETLVTMIASQDVEGLSKLPGISKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ ELK                  + ++           ++ AL++LGY + QA  
Sbjct: 120 TAERIVMELKD-----------------EFESAGIKDMRIYHESLEALISLGYPEKQARE 162

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV  V ++       S++I+ AL+ +S
Sbjct: 163 AVKHVYREGMK---TSELIKEALKFLS 186


>gi|123966258|ref|YP_001011339.1| putative holliday junction DNA helicase RuvA [Prochlorococcus
           marinus str. MIT 9515]
 gi|123200624|gb|ABM72232.1| putative holliday junction DNA helicase RuvA [Prochlorococcus
           marinus str. MIT 9515]
          Length = 228

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 98/221 (44%), Gaps = 18/221 (8%)

Query: 1   MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLGKIG---DFCTLFVETHM 53
           MI  +KG +   ++     Y+LI+ QG+ Y I       + L           L+++   
Sbjct: 1   MISWVKGKLVSSWQTNNKFYILINCQGLGYEIQTIESVFNELNSKNVSDKEIILWLKHIK 60

Query: 54  RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113
           ++D   LFGF +   R +F+ + +++G+G+++ + +L++ T  +++ +I   + K+I+ +
Sbjct: 61  KEDSDSLFGFFTKDQRDFFIQILNIKGIGSQIGIALLNKFTLNQIINAISNNDKKLISSV 120

Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
            GI  K+  RI+ ELK K    +  ++++    N        + S   +    L +L Y 
Sbjct: 121 QGIGQKMTDRIILELKSKV--FTQQIEKENLKTNNFLEENKELNSIFEDLELTLQSLNYP 178

Query: 174 QDQATTAVVSVLKKEKNIA---------DDSQIIRLALRAI 205
             +       ++   K+               +++ A+  +
Sbjct: 179 NKKIKNLFPKLINDIKDNKIATLEINSISFESLLKEAMNYL 219


>gi|268679680|ref|YP_003304111.1| Holliday junction DNA helicase RuvA [Sulfurospirillum deleyianum
           DSM 6946]
 gi|268617711|gb|ACZ12076.1| Holliday junction DNA helicase RuvA [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 186

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 92/206 (44%), Gaps = 22/206 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I+G +      +V +    G+ Y ++  + + + + ++ +  +L V   +R+DQ  
Sbjct: 1   MIVGIEGIVVKKEVTFVYLKTTSGLSYKVFISLFSSARI-QLNEKISLHVSQIIREDQHS 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF+ + +++ F  L  + G+G   A+ V S ++  +   +++ QN     ++PGI  K
Sbjct: 60  LYGFVDENEKKVFDTLVKLNGIGPSTALAVCSTLSPDDFAHALVSQNISAFQKVPGIGPK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ EL   ++ L                H     S    A  AL +LG+ ++    
Sbjct: 120 SAKRILVELSDFSLQL---------------LHEDFTNSSLQEASMALESLGFKKEMIKK 164

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            +  +        D   II+ AL+ +
Sbjct: 165 VLSQI-----QGGDTQTIIKEALKKL 185


>gi|148927930|ref|ZP_01811336.1| Holliday junction DNA helicase RuvA [candidate division TM7
           genomosp. GTL1]
 gi|147886719|gb|EDK72283.1| Holliday junction DNA helicase RuvA [candidate division TM7
           genomosp. GTL1]
          Length = 187

 Score =  114 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 79/205 (38%), Gaps = 18/205 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +   + D ++IDV GV Y +         L  + +   L+   H+R+    L
Sbjct: 1   MIAHVVGRLTEKFIDSIIIDVNGVGYEVLVTALEYEEL-ALQEEVKLYTYHHVREQVEEL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S   ++ F LL +VQG+G + A+ +LS      +  +I   +S  I +  G+  + 
Sbjct: 60  YGFSSLAGKRLFELLITVQGIGPKAALAILSLGDPEVVRSAIASSDSGFIQRASGVGKRT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ +L  K    S            +                      Y   QA   
Sbjct: 120 ADRVVVDLADKVGLPSQAGHTPKQAGGDDALDALLALG-------------YNVRQA--- 163

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              VL +        + +R AL+ +
Sbjct: 164 -TEVLAELDTTLTVEEKVRQALKRM 187


>gi|61657382|emb|CAI44298.1| holliday junction DNA helicase [Thermotoga petrophila]
          Length = 191

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 100/207 (48%), Gaps = 22/207 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I G +     + +L++   GV + I C ++T   + + G  C L     + QD I 
Sbjct: 4   MIAGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTSEEV-EEGGECFLHTFLSVSQDGIT 62

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF ++  ++ F+ L  V  +G + A+ ++S   A  LV  I  Q+ + ++++PGIS K
Sbjct: 63  LYGFSNERKKELFLSLTKVSRLGPKTALKIISNEDAETLVTMIASQDVEGLSKLPGISKK 122

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ ELK                  + ++           ++ AL++LGY + QA  
Sbjct: 123 TAERIVMELKD-----------------EFESAGIKDMRIYHESLEALISLGYPEKQARE 165

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV  V ++       S++I+ AL+ +S
Sbjct: 166 AVKHVYREGMK---TSELIKEALKFLS 189


>gi|332638256|ref|ZP_08417119.1| Holliday junction DNA helicase RuvA [Weissella cibaria KACC 11862]
          Length = 199

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 92/205 (44%), Gaps = 7/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   + G I  +  +Y++++V G+ Y +       +    + +   ++VE  +R+++  L
Sbjct: 1   MYEYLNGVITEVAPNYIVVEVGGIGYRVLV-ANPYAF--PMNELERVYVEQIIRENEQSL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  ++  F  L +V G+G + A+ +L+    T LV++I   +   + + PGI  K 
Sbjct: 58  YGFLTADEKLLFQKLLNVSGIGPKSALAILANADHTGLVQAIADNDITFLTKFPGIGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +L+ K   L      +++ V  E+    +            +     +   T  
Sbjct: 118 AQQIVLDLQNKLGDLPFNNDIEINLVLPEKQTSDNPELADALLALEALGY--AKKDITR- 174

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  VL KE      ++ +   LR +
Sbjct: 175 VEKVLTKEAQ-MTTAEYVSAGLRLL 198


>gi|225847962|ref|YP_002728125.1| holliday junction DNA helicase RuvA [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644479|gb|ACN99529.1| holliday junction DNA helicase RuvA [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 181

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 48/206 (23%), Positives = 94/206 (45%), Gaps = 28/206 (13%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  IKG I  + ++ ++++  G    I  P        K  D  T++    +++++IR+
Sbjct: 1   MLEFIKGKIVKVDKNKIIVEKDGFGIKINVPDS-----EKFSDEDTVYTILKVKEEEIRV 55

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
            GF +  +++ F  L  + GVG + A+ +L   +  E ++ +   +   + ++ GI  K 
Sbjct: 56  IGFKTQEEKELFNKLTQIHGVGEKHALAILGHFSIDEFIDILDQSDVDSLTKVQGIGKKT 115

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELKGK                       S  S   + +  L NLG+ ++Q+   
Sbjct: 116 AQRIIVELKGKVD--------------------FSENSLIQDFVKTLTNLGFDKEQSYKV 155

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  +LK++ N      I++ A+  +S
Sbjct: 156 VRKLLKEDNN---VENILKKAISTLS 178


>gi|56416490|ref|YP_153564.1| holliday junction DNA helicase [Anaplasma marginale str. St.
           Maries]
 gi|222474859|ref|YP_002563274.1| Holliday junction DNA helicase (ruvA) [Anaplasma marginale str.
           Florida]
 gi|255002828|ref|ZP_05277792.1| Holliday junction DNA helicase (ruvA) [Anaplasma marginale str.
           Puerto Rico]
 gi|255003960|ref|ZP_05278761.1| Holliday junction DNA helicase (ruvA) [Anaplasma marginale str.
           Virginia]
 gi|269959097|ref|YP_003328886.1| holliday junction DNA helicase motor protein [Anaplasma centrale
           str. Israel]
 gi|81359282|sp|Q5PBM0|RUVA_ANAMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254766938|sp|B9KHQ6|RUVA_ANAMF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|56387722|gb|AAV86309.1| holliday junction DNA helicase [Anaplasma marginale str. St.
           Maries]
 gi|222418995|gb|ACM49018.1| Holliday junction DNA helicase (ruvA) [Anaplasma marginale str.
           Florida]
 gi|269848928|gb|ACZ49572.1| holliday junction DNA helicase motor protein [Anaplasma centrale
           str. Israel]
          Length = 190

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 51/208 (24%), Positives = 97/208 (46%), Gaps = 21/208 (10%)

Query: 1   MIGKIKGNIEGL-YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ-I 58
           MIG + G +E +   + +++ V GV Y++  P R LS   + GD   L++ET++ +D   
Sbjct: 1   MIGTLSGTVEEVVCSNRIILCVGGVGYLVQLPGRVLSG-CQHGDHVRLYIETYVGRDGVS 59

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
           +L+GF +  ++    +L  V GV  + AM +L  +T  ++  +I+ ++   +    G+  
Sbjct: 60  QLYGFANREEQNCMRMLIKVSGVNYKTAMAILDVLTPEQVFSAIVSEDRAALKVG-GVGE 118

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K+ SRI++EL  +            +  +               A++AL++LGY +  A 
Sbjct: 119 KLISRIISELTPQVQKFELNRFAATTRTDS-------------EAVAALLSLGYERTAAL 165

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
            A+  V             +R AL  +S
Sbjct: 166 GALQKV----GVCDSTEDAVRRALLELS 189


>gi|170288580|ref|YP_001738818.1| Holliday junction DNA helicase RuvA [Thermotoga sp. RQ2]
 gi|170176083|gb|ACB09135.1| Holliday junction DNA helicase RuvA [Thermotoga sp. RQ2]
          Length = 188

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 101/207 (48%), Gaps = 22/207 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I G +     + +L++   GV + I C ++T   + + G  C L     + QD I 
Sbjct: 1   MIAGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTSEEV-EEGGECFLHTFLSVSQDGIT 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +++ ++ F+ L  V  +G + A+ ++S   A  LV  I  Q+ + ++++PGIS K
Sbjct: 60  LYGFSNEMKKELFLSLTKVSRLGPKTALKIISNEDAETLVAMIASQDVEGLSKLPGISKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ ELK                  + ++           ++ AL++LGY + QA  
Sbjct: 120 TAERIVMELKD-----------------EFESAGIKDMRIYHESLEALISLGYPEKQARE 162

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV  V ++       S++I+ AL+ +S
Sbjct: 163 AVKHVYREGMK---TSELIKEALKFLS 186


>gi|254253224|ref|ZP_04946542.1| DNA recombination protein [Burkholderia dolosa AUO158]
 gi|124895833|gb|EAY69713.1| DNA recombination protein [Burkholderia dolosa AUO158]
          Length = 164

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/177 (27%), Positives = 89/177 (50%), Gaps = 15/177 (8%)

Query: 30  CPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGV 89
            P+ T   L + G+   L  +  +R+D   L+GFL+  +R  F  L  + G+GAR+A+ V
Sbjct: 1   MPMSTFYNLPQTGERVVLLTQQIVREDAHLLYGFLTPQERTTFRELLKITGIGARMALAV 60

Query: 90  LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKE 149
           LS ++  EL +++ +Q++  + ++PGI  K A R+              ++  +      
Sbjct: 61  LSGMSVQELAQAVTMQDAARLTRLPGIGKKTAERL-----------LLELKGKLGADLGA 109

Query: 150 QAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
            A   S    A + ++AL+ LGY + +A  A+ +V          S+ I+LAL+A+S
Sbjct: 110 LAGAASPSDHAADILNALLALGYSEKEALAAIKNV----PAGTGVSEGIKLALKALS 162


>gi|154148334|ref|YP_001406161.1| holliday junction DNA helicase RuvA [Campylobacter hominis ATCC
           BAA-381]
 gi|166230535|sp|A7I0X0|RUVA_CAMHC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|153804343|gb|ABS51350.1| holliday junction DNA helicase RuvA [Campylobacter hominis ATCC
           BAA-381]
          Length = 184

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 53/207 (25%), Positives = 98/207 (47%), Gaps = 24/207 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLID-VQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  ++G I      + ++  V GV Y I   +   + + K G+   L     +R+D   
Sbjct: 1   MIVAVEGIITKKEPTFCVLKTVTGVSYGISISLGCSARINK-GEKIELLTAQILREDADL 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL + +++ F +L  + G+GA  AM V S +++   + +II  ++  +  +PGI  K
Sbjct: 60  LYGFLDEKEKRMFEMLIKLNGIGANTAMAVCSSLSSDNFLRAIINGDTATLTTVPGIGPK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ EL    I L++  +Q                 + I  ISAL NLG+ +D+   
Sbjct: 120 TARRIIAELSDAKIELANDGEQ-----------------YKIETISALENLGFKRDKINK 162

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
            ++          + + +I+ AL+ ++
Sbjct: 163 ILL-----NCKSTNTADLIKEALKKLA 184


>gi|50954747|ref|YP_062035.1| holliday junction DNA helicase [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|71649473|sp|Q6AFB5|RUVA_LEIXX RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|50951229|gb|AAT88930.1| holliday junction DNA helicase [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 207

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/192 (24%), Positives = 80/192 (41%), Gaps = 8/192 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +        +IDV GV + +         L ++GD   +     +R+D ++L
Sbjct: 1   MISSLRGTVLSASGGAAVIDVGGVGFAVQLTPDHARSL-RVGDEAFVHTTLIVREDSLQL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF      Q F LL  V GVG + A+ VLS ++  ++ +++   +      + GI  K 
Sbjct: 60  FGFSGLEQLQVFELLNGVSGVGPKSAISVLSVLSPDQVADAVAAADDAPFRAVSGIGPKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A  I+  L GK  +                    +  S + + + ALV LG+ +  A  A
Sbjct: 120 AKLIVVSLTGKLAACRRPSAPS-------ARRPSAPSSVSDSVLVALVGLGWPEKVAGEA 172

Query: 181 VVSVLKKEKNIA 192
           V  V+       
Sbjct: 173 VAEVIAGTAESE 184


>gi|61657514|emb|CAI44425.1| holliday junction DNA helicase [Thermotoga sp. RQ2]
          Length = 191

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 101/207 (48%), Gaps = 22/207 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I G +     + +L++   GV + I C ++T   + + G  C L     + QD I 
Sbjct: 4   MIAGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTSEEV-EEGGECFLHTFLSVSQDGIT 62

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +++ ++ F+ L  V  +G + A+ ++S   A  LV  I  Q+ + ++++PGIS K
Sbjct: 63  LYGFSNEMKKELFLSLTKVSRLGPKTALKIISNEDAETLVAMIASQDVEGLSKLPGISKK 122

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ ELK                  + ++           ++ AL++LGY + QA  
Sbjct: 123 TAERIVMELKD-----------------EFESAGIKDMRIYHESLEALISLGYPEKQARE 165

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           AV  V ++       S++I+ AL+ +S
Sbjct: 166 AVKHVYREGMK---TSELIKEALKFLS 189


>gi|58584509|ref|YP_198082.1| Holliday junction resolvasome, DNA-binding subunit, RuvA [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
 gi|75497985|sp|Q5GT34|RUVA_WOLTR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|58418825|gb|AAW70840.1| Holliday junction resolvasome, DNA-binding subunit, RuvA [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
          Length = 196

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 63/208 (30%), Positives = 110/208 (52%), Gaps = 22/208 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVET--HMRQDQI 58
           MIG + G ++ +Y D+++++V  V YIIY   + L  +  IG    L +ET  + R++  
Sbjct: 1   MIGNLSGTVDEVYGDHIILNVNDVGYIIYLSAKAL-NVCYIGSKIKLLIETCANNRENTT 59

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
           +L+GF++  ++    LL  V GV  + AM +LS++T  +L  +I+ ++   + +I G+  
Sbjct: 60  QLYGFINKEEQSCLRLLVKVSGVSYKTAMSILSKLTPEQLFLAIMNEDKIAL-KISGLGP 118

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K+ +RI+TEL GK   L              + +  +      +A+SAL+NLGY + +  
Sbjct: 119 KLINRIITELSGKVSKL--------------ETNNNNFYPINEDAVSALINLGYEKTKVY 164

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
             +    KK K   D   IIR AL+ +S
Sbjct: 165 DTI----KKYKPNLDTKDIIRTALKELS 188


>gi|217077241|ref|YP_002334959.1| holliday junction DNA helicase RuvA [Thermosipho africanus TCF52B]
 gi|226725448|sp|B7IHQ4|RUVA_THEAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|217037096|gb|ACJ75618.1| holliday junction DNA helicase RuvA [Thermosipho africanus TCF52B]
          Length = 189

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 93/206 (45%), Gaps = 18/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +    V ++V  + Y I     T      I     ++ +  +  D I L
Sbjct: 1   MIHALNGKVESIENGKVYVNVNDLIYEIIV-GDTGDFEEYINRNVKIYTKMVVNDDGISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL  +  + F  L  V  +G + A+ ++S  +   +V +II ++ K ++ +PGI  K 
Sbjct: 60  YGFLEVIKLKLFEKLIGVNKLGPKSALKIISSNSVESVVSAIINEDVKALSSLPGIGPKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK     L                 I       + AI ALV LG+ ++QA  A
Sbjct: 120 AERIVLELKDTIKEL--------------DVSINEKDRKVLEAIEALVTLGFNRNQAKKA 165

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  V  K+  + D   II+ ALR +S
Sbjct: 166 VNKVAAKDDKLDD---IIKKALRFLS 188


>gi|284929265|ref|YP_003421787.1| Holliday junction DNA helicase subunit RuvA [cyanobacterium UCYN-A]
 gi|284809709|gb|ADB95406.1| Holliday junction DNA helicase, RuvA subunit [cyanobacterium
           UCYN-A]
          Length = 213

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 104/214 (48%), Gaps = 13/214 (6%)

Query: 1   MIGKIKGNIEGLYEDY-----VLIDVQGVCYIIYCPIRTLSCLGKIG-DFCTLFVETHMR 54
           MI   KG+   + +D      ++++V  + Y I    +    L     D+  +F+    R
Sbjct: 1   MINYFKGSFVEILKDTKNKIVLIMEVNQIGYEIQITSKLEEKLSNKKSDYIQVFIHLQTR 60

Query: 55  QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114
           +D   L+GF++ L+++ F  L ++ G+GA++++ +L+ + + +L++++   N K++++ P
Sbjct: 61  EDSQILYGFINKLEQELFRQLININGIGAQLSITLLNTLGSEKLIKAVCSGNVKMLSESP 120

Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           G+  K A RI+ EL  K + L    +  +   +   +      +   +  S+L+ LGY +
Sbjct: 121 GVGKKTAERIILELNSKLLKLIEAFEIKVELHSCNSSE-----NTLEDITSSLLLLGYDR 175

Query: 175 DQATTAVVSVLKK--EKNIADDSQIIRLALRAIS 206
           +      V +          +  +++R A+  +S
Sbjct: 176 EGVDRVTVYLKNNQFLSKQINTEELLRTAITWLS 209


>gi|218780990|ref|YP_002432308.1| DNA recombination protein RuvA domain I [Desulfatibacillum
           alkenivorans AK-01]
 gi|254766956|sp|B8FBT7|RUVA_DESAA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|218762374|gb|ACL04840.1| DNA recombination protein RuvA domain I [Desulfatibacillum
           alkenivorans AK-01]
          Length = 204

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/201 (23%), Positives = 90/201 (44%), Gaps = 11/201 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIR 59
           MIG ++G I     + ++I   GV Y +  P    + + K  GD   L++  H  + Q +
Sbjct: 1   MIGYLEGKILYRQGERIMILAGGVGYEVLLPSVVSASMTKGPGDETGLYIYFHQTEKQPK 60

Query: 60  --LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
             L GF S  +R++F    SV+ +G   A+  L  I   E+  +I  ++S  + ++ GI 
Sbjct: 61  PVLIGFNSLEEREFFERFISVEAIGPIKAVSALC-IPIGEIAAAIENKDSGALRKLKGIG 119

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN-LGYGQDQ 176
            + A +I+  L+GK    +     + +             +F +  +  LVN LG+   +
Sbjct: 120 ARTADKIIATLRGKMAVFAGEHGGEPA------GPAPVEENFHLLVLDVLVNQLGHKAAE 173

Query: 177 ATTAVVSVLKKEKNIADDSQI 197
           A   +   +K+   I+   ++
Sbjct: 174 AKELINQAIKRNPAISSPEEL 194


>gi|160934125|ref|ZP_02081512.1| hypothetical protein CLOLEP_02988 [Clostridium leptum DSM 753]
 gi|156866798|gb|EDO60170.1| hypothetical protein CLOLEP_02988 [Clostridium leptum DSM 753]
          Length = 168

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 80/175 (45%), Gaps = 10/175 (5%)

Query: 32  IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91
           + T   L  IG    L+   ++R+D + LFGF S  +   F LL SV GVG +V + +LS
Sbjct: 1   MNTQRSLPAIGKEAVLYTHMNVREDAVDLFGFSSLAELNCFKLLTSVSGVGPKVGLAILS 60

Query: 92  RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQA 151
            ++  ++  ++   + K +    G+  K+A R++ ELK K  +L    +          A
Sbjct: 61  VLSPEQVAVAVAAGDFKTLTMAQGVGNKLAQRVILELKDKLKALGGGEEV------TAAA 114

Query: 152 HICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
            + +    A  A++AL  LGY        V              ++IRL L+A++
Sbjct: 115 GVVNAAGNAAEAMNALTVLGYTPSDVAPVVAKFDSSLP----VEELIRLTLKAMA 165


>gi|157413283|ref|YP_001484149.1| putative holliday junction DNA helicase RuvA [Prochlorococcus
           marinus str. MIT 9215]
 gi|167012662|sp|A8G4N2|RUVA_PROM2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|157387858|gb|ABV50563.1| putative holliday junction DNA helicase RuvA [Prochlorococcus
           marinus str. MIT 9215]
          Length = 225

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/218 (23%), Positives = 102/218 (46%), Gaps = 15/218 (6%)

Query: 1   MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLGK---IGDFCTLFVETHM 53
           MI  I G +   ++     +VLI+ QG+ Y I         L          TL+++   
Sbjct: 1   MISWINGELVETWQTNQKFFVLINCQGLGYEIQILESFFLKLKTNQISNKKITLWIKHIK 60

Query: 54  RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113
           ++D   LFGF S   + +F+ + SV+GVG+++ M +L++ + +E++++I  Q+ K+I  I
Sbjct: 61  KEDSDLLFGFTSKDQKFFFIEILSVRGVGSQIGMSILNKFSISEIIKAIKTQDKKLICSI 120

Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           PGI  K++ R++ ELK K    S +  ++     + +     +     +    L +L Y 
Sbjct: 121 PGIGQKMSDRLILELKSKFK--SKIQIEEEKGQEEFEITNPEIYKLMEDLQLTLQSLNYK 178

Query: 174 QDQATTAVVSVLKKEK------NIADDSQIIRLALRAI 205
             +  T +  ++K+               ++ LA+  +
Sbjct: 179 NKEIKTILPFLIKELGLPTKKEKNLSFENLLNLAMNHL 216


>gi|86152153|ref|ZP_01070365.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315124320|ref|YP_004066324.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85840938|gb|EAQ58188.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315018042|gb|ADT66135.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
          Length = 183

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 93/206 (45%), Gaps = 25/206 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           M+  I+G I      ++++    G+ Y I+  +   + + +  +    F+   +++D  +
Sbjct: 1   MVVGIEGIITKKEPTFIIVKCASGLSYGIFISLFCSAKI-QTQEKHEFFITQIIKEDSNK 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
            +GFL   +++ F +L  V GVGA  AM V S +      +++ L +  V+ ++PGI  K
Sbjct: 60  FYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDVNSFYKALSLGDESVLKKVPGIGPK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ EL      L +V                        A++AL+ LG+ Q++  +
Sbjct: 120 SAKRIIVELSDTKTKLENV------------------SDDKSEALAALLTLGFKQEKIIS 161

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            + S           S++I+ AL+ +
Sbjct: 162 VLASA-----QATSTSELIKEALKKL 182


>gi|73667297|ref|YP_303313.1| Holliday junction DNA helicase subunit RuvA [Ehrlichia canis str.
           Jake]
 gi|90134943|sp|Q3YRE0|RUVA_EHRCJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|72394438|gb|AAZ68715.1| Holliday junction DNA helicase subunit RuvA [Ehrlichia canis str.
           Jake]
          Length = 190

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 109/207 (52%), Gaps = 19/207 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ-IR 59
           MIG + G IE +Y  Y++++V  V YI++   R L    KIG+   L++ETH+ +D   +
Sbjct: 1   MIGSLTGIIEEIYITYIILNVGNVGYIVHVSQRVLQT-CKIGNNIKLYIETHVNRDNLTQ 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL   ++ +  +L ++ G+  + AM +LS+++  ++  +++  N     +  GI  K
Sbjct: 60  LYGFLDKQEQDYMRMLITINGINYKTAMSILSKLSPEQIFSAVVSNNKNAF-RGNGIGEK 118

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           +A RI TEL+ K   +       +                  ++++AL++LGY + +A  
Sbjct: 119 LAGRITTELQYKISKMPIEETLIIK---------------EDDSLAALISLGYDKLKAFN 163

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           A+  +     N A+  +IIR AL+ +S
Sbjct: 164 AIQEIKSDFPN-ANIQEIIRKALQKLS 189


>gi|15639532|ref|NP_218982.1| Holliday junction DNA helicase (ruvA) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189025771|ref|YP_001933543.1| Holliday junction DNA helicase, subunit A [Treponema pallidum
           subsp. pallidum SS14]
 gi|6094206|sp|O83554|RUVA_TREPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560146|sp|B2S3D5|RUVA_TREPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|3322833|gb|AAC65527.1| Holliday junction DNA helicase (ruvA) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189018346|gb|ACD70964.1| Holliday junction DNA helicase, subunit A [Treponema pallidum
           subsp. pallidum SS14]
 gi|291059920|gb|ADD72655.1| Holliday junction DNA helicase RuvA [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 227

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 49/215 (22%), Positives = 98/215 (45%), Gaps = 9/215 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +     + + ++V G+ + I     + +  G++G    +F   + R+D +RL
Sbjct: 1   MFESISGILTLHERERLCVEVHGIEWEIAVSAYSSAAFGEVGSHVKVFTWLYHREDALRL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R  F+ L  V+G+G + A+ VLS I++  L  ++   +   + +IPGI  K 
Sbjct: 61  FGFSNVQERTLFLSLTKVEGIGPKQALKVLSSISSQALCAALDTGDLCALQRIPGIGKKT 120

Query: 121 ASRIMTELKGKAISLSSV----VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
           A R++  LKG      +      Q D    +              + ++ALV +GY +  
Sbjct: 121 AQRMLLALKGTLALTDAASCAQSQTDDRAAHPSNLGCAPHAREIEDLVTALVQMGYDRKM 180

Query: 177 ATTAVVSVLKKEKNI-----ADDSQIIRLALRAIS 206
           A   +        ++      +++ +++ A+ A+S
Sbjct: 181 AAEVIAQESAALCSVGRSLYEEEATVLKRAILALS 215


>gi|317051309|ref|YP_004112425.1| Holliday junction DNA helicase RuvA [Desulfurispirillum indicum S5]
 gi|316946393|gb|ADU65869.1| Holliday junction DNA helicase RuvA [Desulfurispirillum indicum S5]
          Length = 202

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 92/205 (44%), Gaps = 8/205 (3%)

Query: 1   MIGKIKGNIEGLYEDYV-LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  + G +  L +D   ++   GV Y +  P    + L K+    ++     +++D I 
Sbjct: 1   MISLVSGTVHSLTQDRATILTSGGVGYELSIPASLATSL-KVDQTVSIQTWMGVKEDAIT 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF S  ++  F+LL  V G+GA++A+  +  +   +L  +I + +   I +IPG+  K
Sbjct: 60  LYGFSSSEEKALFLLLMKVSGIGAKIALAAVGTLNTQQLGNAIAMGDIATIQRIPGVGKK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           +A +I  ELK K            S            PS   +A+  L+ LG  +++A +
Sbjct: 120 VAEKIALELKDKVTP----AAATSSAPQAFTGTTSGTPSVFADAVQGLIALGLRREEADS 175

Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204
              +          ++ IIR  LR 
Sbjct: 176 --AARRAMAAGADSETSIIREVLRQ 198


>gi|150020803|ref|YP_001306157.1| Holliday junction DNA helicase RuvA [Thermosipho melanesiensis
           BI429]
 gi|166231454|sp|A6LLH1|RUVA_THEM4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|149793324|gb|ABR30772.1| Holliday junction DNA helicase RuvA [Thermosipho melanesiensis
           BI429]
          Length = 189

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/206 (24%), Positives = 92/206 (44%), Gaps = 18/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +    + ++V  + Y I            + +   +F +  +  D+I L
Sbjct: 1   MIYAMYGVLEDIENGKLYLNVNEIVYEIVVGDTGYFE-DFLNEKIKVFTKMIVNDDEISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF   L  + F  L  V  +G + A+ +++    + +V +I+ ++ K ++ +PGI  K 
Sbjct: 60  YGFSDVLKLKLFEKLILVNKLGPKSALKIITSSDVSYIVSAIVNEDVKTLSTLPGIGPKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ ELK                       +       + AI ALV LG+ ++Q+  A
Sbjct: 120 AERIILELKDSMKEF--------------DVTLTEKDKKILEAIEALVTLGFSRNQSKKA 165

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  +LKK+        II+ AL+ +S
Sbjct: 166 VTQILKKDD---SLDDIIKKALKFLS 188


>gi|148243841|ref|YP_001220080.1| DNA recombination protein RuvA [Acidiphilium cryptum JF-5]
 gi|146400404|gb|ABQ28938.1| Holliday junction DNA helicase subunit RuvA [Acidiphilium cryptum
           JF-5]
          Length = 206

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 53/203 (26%), Positives = 93/203 (45%), Gaps = 8/203 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++ G    + +   +IDV GV Y ++ P  TL  +       T+ ++T M   +I L
Sbjct: 1   MITQLTGIPRRIGDQECVIDVHGVGYGVHVPSATLDMIEGEAGPVTILIQTRMSDSEISL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  D Q F  L  VQGVG   A+ +LS++   EL  +I   + K +  + GI    
Sbjct: 61  YGFATPADLQTFRKLVGVQGVGPATALNLLSQLAPEELWRAIREADQKALTAVKGIGPAA 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+++EL+  A  L++ +    + ++   +        A     +L  LG+    A  A
Sbjct: 121 AKRLISELESHAAKLAAEMPAPAARLDLGLS--------ADQLAQSLQRLGHAPSAARAA 172

Query: 181 VVSVLKKEKNIADDSQIIRLALR 203
               L   K    + +++  AL+
Sbjct: 173 AQFALNGAKPGDTEQELVARALQ 195


>gi|78779241|ref|YP_397353.1| Holliday junction DNA helicase subunit RuvA [Prochlorococcus
           marinus str. MIT 9312]
 gi|123727890|sp|Q31B28|RUVA_PROM9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|78712740|gb|ABB49917.1| Holliday junction DNA helicase subunit RuvA [Prochlorococcus
           marinus str. MIT 9312]
          Length = 225

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 50/218 (22%), Positives = 105/218 (48%), Gaps = 15/218 (6%)

Query: 1   MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLGK---IGDFCTLFVETHM 53
           MI  I G +  L++     ++LI+ QG+ Y I         L          TL+++   
Sbjct: 1   MISWISGELVELWQTNQKFFLLINCQGLGYEIQVLESLFLKLKTNQITNKNITLWIKHIK 60

Query: 54  RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113
           ++D   LFGF S   + +F+ + +++GVG+++ MG+LS+ + +E++ +I  QN K+I  +
Sbjct: 61  KEDSDLLFGFSSKDQKNFFIEILNIRGVGSQIGMGILSKFSISEVINAINTQNKKLICSV 120

Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           PGI  K++ R++ ELK K  +   +  Q+    ++       +     +    L +L Y 
Sbjct: 121 PGIGQKMSERLILELKSKFRN--ELKIQEEKSKDEFHIKDNKINKIVSDIELTLKSLNYT 178

Query: 174 QDQATTAVVSVLKKEKN------IADDSQIIRLALRAI 205
           +++  + +  + K+  +            ++ LA+  +
Sbjct: 179 KNEIKSILPIISKEIDSLTKKEKDTSFENLLMLAMNYL 216


>gi|26553733|ref|NP_757667.1| holliday junction DNA helicase [Mycoplasma penetrans HF-2]
 gi|38258589|sp|Q8EWC5|RUVA_MYCPE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|26453740|dbj|BAC44071.1| holliday junction DNA helicase [Mycoplasma penetrans HF-2]
          Length = 219

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 92/213 (43%), Gaps = 12/213 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ--- 57
           MI  I G I     +Y++++     Y ++        + +      +FV T + Q+    
Sbjct: 1   MIEYIIGKISYKNNNYLILENNFKGYKLFMSDP---NIFEENSSAKIFVYTKIFQNNKNN 57

Query: 58  --IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115
                +GF +  ++ +F  L +V G+G + ++ +L       L E I  ++ + ++ + G
Sbjct: 58  FLFEYYGFKTLREKIFFENLLTVNGIGPKTSLTILRN-DLNLLKELIRNEDIESLSVLEG 116

Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
            + K A  I++ L  K  +       +    +       S      + +SAL  LGY ++
Sbjct: 117 FTNKTALSIVSALSYKLKNERISEYNNDVNHSSINQQSNSYNPVP-DLVSALKALGYKKN 175

Query: 176 QATTAVVSVLKKEKNIADD--SQIIRLALRAIS 206
               A+  ++ +  N+++D  S +I  A++ IS
Sbjct: 176 MIEKAINLLIPQLSNVSEDQISDLISQAIKIIS 208


>gi|148926965|ref|ZP_01810642.1| putative Holliday junction DNA helicase [Campylobacter jejuni
           subsp. jejuni CG8486]
 gi|145845049|gb|EDK22146.1| putative Holliday junction DNA helicase [Campylobacter jejuni
           subsp. jejuni CG8486]
          Length = 183

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 93/206 (45%), Gaps = 25/206 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           M+  I+G I      ++++    G+ Y I+  +   + + +  +    F+   +++D  +
Sbjct: 1   MVVGIEGIITKKEPTFIIVKCTSGLSYGIFISLFCSAKI-QTQEKHEFFITQIIKEDSNK 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
            +GFL   +++ F +L  V GVGA  AM V S +      +++ L +  V+ ++PGI  K
Sbjct: 60  FYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDVNSFYKALSLGDESVLKKVPGIGPK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ EL      L +V                        A++AL+ LG+ Q++  +
Sbjct: 120 SAKRIIVELSDTKTKLENV------------------SDDKSEALAALLTLGFKQEKIIS 161

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            + S           S++I+ AL+ +
Sbjct: 162 VLASA-----QATGTSELIKEALKKL 182


>gi|87308915|ref|ZP_01091053.1| probable holliday junction DNA helicase ruvA [Blastopirellula
           marina DSM 3645]
 gi|87288258|gb|EAQ80154.1| probable holliday junction DNA helicase ruvA [Blastopirellula
           marina DSM 3645]
          Length = 208

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 87/207 (42%), Gaps = 14/207 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQD--- 56
           MI KI G +  + E  + + V    Y +  P      L   +G+   L    ++  +   
Sbjct: 1   MITKITGKVTSVSEAVLTLTVGAFEYEVLIPEFVRRQLQNHLGEEVALHTIEYLEGNPQQ 60

Query: 57  ---QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113
                R+ GF   ++R++F L  SV GVG R A+  + R    E+   I  Q++K ++ +
Sbjct: 61  GRLTPRMIGFSDRIEREFFELFCSVDGVGVRKALRAMVR-PVQEVASLIEEQDTKGLSAL 119

Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           PG+    A RI+ +L+ K    + +V +             +           L +LG+ 
Sbjct: 120 PGVGPATADRIVAKLRRKVPKFALLVGRSE------LGEDIAPRDVISETFDVLRSLGHS 173

Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRL 200
           +  A   + + L+++K   D   +++ 
Sbjct: 174 ESDARRLIDAALEEKKKYKDVETLLQA 200


>gi|241895534|ref|ZP_04782830.1| Holliday junction DNA helicase RuvA [Weissella paramesenteroides
           ATCC 33313]
 gi|241871112|gb|EER74863.1| Holliday junction DNA helicase RuvA [Weissella paramesenteroides
           ATCC 33313]
          Length = 196

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 10/205 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG I  +   Y++ID+QGV Y +         L       T++VE  +R +   L
Sbjct: 1   MYEYLKGTITAILPSYIVIDIQGVGYRVLVANPYAFSL---NSTMTVYVEQIIRDNDQNL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL+  D+  F  L +V G+G + A+ +L+    T L+ +I   +   + + PGI  K 
Sbjct: 58  YGFLTKEDKDLFQKLLNVSGIGPKSALAILANSDHTGLINAITQNDIGFLTKFPGIGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +L+ K   L+  +  +   V +E        +               +      
Sbjct: 118 AQQIVLDLQNKLSDLTLSIDDNNVSVQEEATDSELADALLALEALGYA-----KKDIKRV 172

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
              + K+       +  +   LR +
Sbjct: 173 EKELTKQ--TNLTTAAYVSSGLRLL 195


>gi|57237644|ref|YP_178892.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni RM1221]
 gi|86153371|ref|ZP_01071575.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|121613230|ref|YP_001000488.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|157415070|ref|YP_001482326.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|205356769|ref|ZP_03223528.1| putative Holliday junction DNA helicase [Campylobacter jejuni
           subsp. jejuni CG8421]
 gi|73621848|sp|Q5HUZ3|RUVA_CAMJR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230537|sp|A1VZE7|RUVA_CAMJJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|172047113|sp|A8FLL2|RUVA_CAMJ8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|57166448|gb|AAW35227.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni RM1221]
 gi|85843097|gb|EAQ60308.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|87249483|gb|EAQ72443.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|157386034|gb|ABV52349.1| holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|205345336|gb|EDZ31980.1| putative Holliday junction DNA helicase [Campylobacter jejuni
           subsp. jejuni CG8421]
 gi|307747711|gb|ADN90981.1| Holliday junction ATP-dependent DNA helicase ruvA [Campylobacter
           jejuni subsp. jejuni M1]
 gi|315058253|gb|ADT72582.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni S3]
 gi|315931217|gb|EFV10189.1| holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 183

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 93/206 (45%), Gaps = 25/206 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           M+  I+G I      ++++    G+ Y I+  +   + + +  +    F+   +++D  +
Sbjct: 1   MVVGIEGIITKKEPTFIIVKCASGLSYGIFISLFCSAKI-QTQEKHEFFITQIIKEDSNK 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
            +GFL   +++ F +L  V GVGA  AM V S +      +++ L +  V+ ++PGI  K
Sbjct: 60  FYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDVNSFYKALSLGDESVLKKVPGIGPK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ EL      L +V                        A++AL+ LG+ Q++  +
Sbjct: 120 SAKRIIVELSDTKTKLENV------------------SDDKSEALAALLTLGFKQEKIIS 161

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            + S           S++I+ AL+ +
Sbjct: 162 VLASA-----QATGTSELIKEALKKL 182


>gi|312622645|ref|YP_004024258.1| holliday junction DNA helicase ruva [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203112|gb|ADQ46439.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 197

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 55/208 (26%), Positives = 97/208 (46%), Gaps = 15/208 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD--QI 58
           MI  I G I+ ++ +YV+++   +   I+C     S    +G    ++V     ++  ++
Sbjct: 1   MIDSIVGTIQEVFNNYVILNYNNIYIKIFCNSTKFSEF--LGKEKRVYVSLKFNENLSEL 58

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
             +GFL+  +R+ F+ LQ V GVG+++A+ +LS I   EL+  I   N   + ++ GI  
Sbjct: 59  ECYGFLTREERELFLKLQKVTGVGSKLALQILSSIDFQELIVEIAKGNVARLEKVKGIGK 118

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K ASRI+ ELK        V        N  +               AL++LGY  D+  
Sbjct: 119 KTASRIILELKETLKKEFKVATTAGKGENNYEK--------LEEISLALLSLGYDIDEVY 170

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
             + S   ++ +       I+LAL+ +S
Sbjct: 171 QVLSS---EDFSELSLEDGIKLALKKLS 195


>gi|153952036|ref|YP_001398280.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|166230536|sp|A7H450|RUVA_CAMJD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|152939482|gb|ABS44223.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 183

 Score =  110 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 93/206 (45%), Gaps = 25/206 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           M+  I+G I      ++++    G+ Y I+  +   + + +  +    F+   +++D  +
Sbjct: 1   MVVGIEGIITKKEPTFIIVKCASGLSYGIFISLFCSAKI-QTQEKHEFFITQIIKEDSNK 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
            +GFL   +++ F +L  V GVGA  AM V S +      +++ L +  V+ ++PGI  K
Sbjct: 60  FYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDINSFYKALSLGDESVLKKVPGIGPK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ EL      L +V                        A++AL+ LG+ Q++  +
Sbjct: 120 SAKRIIVELSDTRTKLENV------------------SDDKSEALAALLTLGFKQEKIIS 161

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            + S           S++I+ AL+ +
Sbjct: 162 VLASA-----QATGTSELIKEALKKL 182


>gi|86150190|ref|ZP_01068417.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88597606|ref|ZP_01100840.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|218562427|ref|YP_002344206.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|20455273|sp|Q9PPC1|RUVA_CAMJE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|85839306|gb|EAQ56568.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88190198|gb|EAQ94173.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|112360133|emb|CAL34927.1| putative Holliday junction ATP-dependent DNA helicase
           [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|284926045|gb|ADC28397.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|315928270|gb|EFV07586.1| holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni DFVF1099]
 gi|315929355|gb|EFV08561.1| holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 183

 Score =  110 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 48/206 (23%), Positives = 94/206 (45%), Gaps = 25/206 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           M+  I+G I      ++++    G+ Y I+  +   + + +  +    F+   +++D  +
Sbjct: 1   MVVGIEGIITKKEPTFIIVKCASGLSYGIFISLFCSAKI-QTQEKHEFFITQIIKEDSNK 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
            +GFL   +++ F +L  V GVGA  AM V S +      +++ L +  V+ ++PGI  K
Sbjct: 60  FYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDVNSFYKALSLGDESVLKKVPGIGPK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ EL      L +V                        A++AL+ LG+ Q++  +
Sbjct: 120 SAKRIIVELSDTKTKLENV------------------SDDKSEALAALLTLGFKQEKIIS 161

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            +VS           S++I+ AL+ +
Sbjct: 162 VLVSA-----QATGTSELIKEALKKL 182


>gi|283957218|ref|ZP_06374680.1| putative Holliday junction ATP-dependent DNA helicase
           [Campylobacter jejuni subsp. jejuni 1336]
 gi|283791290|gb|EFC30097.1| putative Holliday junction ATP-dependent DNA helicase
           [Campylobacter jejuni subsp. jejuni 1336]
          Length = 183

 Score =  110 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 93/206 (45%), Gaps = 25/206 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           M+  I+G I      ++++    G+ Y I+  +   + + +  +    F+   +++D  +
Sbjct: 1   MVVGIEGIITKKEPTFIIVKCASGLSYGIFISLFCSAKI-QTQEKHEFFITQIIKEDSNK 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
            +GFL   +++ F +L  V GVGA  AM V S +      +++ L +  V+ ++PGI  K
Sbjct: 60  FYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDVNSFYKALSLGDESVLKKVPGIGPK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ EL      L +V                        A++AL+ LG+ Q++  +
Sbjct: 120 SAKRIIVELSDTKTKLENV------------------SDDKSEALTALLTLGFKQEKIIS 161

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            + S           S++I+ AL+ +
Sbjct: 162 VLASA-----QATGTSELIKEALKKL 182


>gi|229820484|ref|YP_002882010.1| Holliday junction DNA helicase RuvA [Beutenbergia cavernae DSM
           12333]
 gi|259495635|sp|C5C5Q7|RUVA_BEUC1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229566397|gb|ACQ80248.1| Holliday junction DNA helicase RuvA [Beutenbergia cavernae DSM
           12333]
          Length = 200

 Score =  110 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 60/207 (28%), Positives = 100/207 (48%), Gaps = 13/207 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D V++ V GV   +     TL+ L ++   C L     +R+D + L
Sbjct: 1   MIALVQGRVAAIGLDAVVVVVGGVGMRVLATPATLAGL-RVEADCELHTSLVVREDSLTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF    +R  F L+Q+V GVG R+A+ +L+  T   L  ++  ++   + ++PGI  K 
Sbjct: 60  FGFADADERDVFELVQTVSGVGPRLALAMLAVHTPDGLRRAVAQEDLAALVRVPGIGRKG 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           ASRI+ EL  +              V+              + + ALV LG+   QA  A
Sbjct: 120 ASRIVLELGDRLGPAQGAAPAAPVAVDDGA-----------DVVDALVGLGWPVRQAQDA 168

Query: 181 VVSVLKKEKNIA-DDSQIIRLALRAIS 206
           V  VL+     A D + ++R ALR+++
Sbjct: 169 VRGVLEDADGTAPDAAGLLRAALRSLA 195


>gi|297518838|ref|ZP_06937224.1| Holliday junction DNA helicase RuvA [Escherichia coli OP50]
          Length = 101

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 51/98 (52%)

Query: 1  MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
          MIG+++G I       VLI+V GV Y +  P+     L + G    +F    +R+D   L
Sbjct: 1  MIGRLRGIIIEKQPPLVLIEVGGVGYEVLMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60

Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATEL 98
          +GF +  +R  F  L    GVG ++A+ +LS ++A + 
Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQF 98


>gi|312127829|ref|YP_003992703.1| holliday junction DNA helicase ruva [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777848|gb|ADQ07334.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 197

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 55/208 (26%), Positives = 95/208 (45%), Gaps = 15/208 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD--QI 58
           MI  I G I+ ++ +YV+++   +   I+C     S    +G    ++V     ++  +I
Sbjct: 1   MIDSIVGTIQEVFNNYVILNYNNIYIKIFCNGTKFSEF--LGKEKRVYVSLKFNENLSEI 58

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
             +GFL+  +R+ F+ LQ V GVG+++A+ +LS I   EL+  I   N   + ++ GI  
Sbjct: 59  ECYGFLTREERELFLKLQKVTGVGSKLALQILSSIDFQELIVEIAKGNVARLEKVKGIGK 118

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K ASRI+ ELK                V                   AL++LGY  D+  
Sbjct: 119 KTASRIILELKETLKK--------EFKVGSTSGKEEKTYEKLEEISLALLSLGYDIDEVN 170

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
             + S   ++ +       I+LAL+ +S
Sbjct: 171 QVLSS---EDFSELSLEDGIKLALKKLS 195


>gi|146296577|ref|YP_001180348.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|166230531|sp|A4XJS2|RUVA_CALS8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|145410153|gb|ABP67157.1| Holliday junction DNA helicase subunit RuvA [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 197

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 53/208 (25%), Positives = 97/208 (46%), Gaps = 15/208 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD--QI 58
           MI  I G I+ ++ +YV+++   +   I+C     S    +G    ++V     ++  ++
Sbjct: 1   MIDSIVGTIQEVFNNYVILNYNNIYIKIFCNSTKFSEF--LGKEKRVYVSLKFNENLSEL 58

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
             +GFL+  +R+ F+ LQ V GVG+++A+ +LS I   +L+  I   N   + ++ GI  
Sbjct: 59  ECYGFLTREERELFLKLQKVTGVGSKLALQILSSIDYQQLIVEIAKGNVARLEKVKGIGK 118

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K ASRI+ ELK        V     +     +               AL++LGY  D+  
Sbjct: 119 KTASRIILELKETLKKEFKVASTSGTEEKTYEK--------LEEISLALLSLGYEIDEIN 170

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
             + S   ++ +       I+LAL+ +S
Sbjct: 171 QVLSS---EDFSELSLEDGIKLALKKLS 195


>gi|157364836|ref|YP_001471603.1| RuvA domain-containing protein [Thermotoga lettingae TMO]
 gi|157315440|gb|ABV34539.1| RuvA domain protein [Thermotoga lettingae TMO]
          Length = 186

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 94/202 (46%), Gaps = 21/202 (10%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64
           +KG +       V++++ G    I C I TL    +IG    L       Q+ I ++GFL
Sbjct: 3   VKGTVHSKNGSSVILEINGFLIKILCDIETLEK-AQIGQTVQLHTHLEFSQEGITIYGFL 61

Query: 65  SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124
           S      F  +  V  +G + A+ ++S     ELV  II Q+ + +++ PGI  K A R+
Sbjct: 62  SKERLYVFEKILKVSKIGPKTALRIVSTSEPEELVHLIISQDVEKLSRFPGIGKKTAERL 121

Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV 184
           + ELK +   + S   +++S                 +AI ALV LG+G+ ++  A  SV
Sbjct: 122 IAELKDEEFEIKSDYSKELS-----------------DAIDALVALGFGKIESREAAKSV 164

Query: 185 LKKEKNIADDSQIIRLALRAIS 206
               K      QI++ AL+ +S
Sbjct: 165 YHSSKKA---EQIVKEALKMLS 183


>gi|167847253|ref|ZP_02472761.1| Holliday junction DNA helicase motor protein [Burkholderia
           pseudomallei B7210]
          Length = 162

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/175 (28%), Positives = 87/175 (49%), Gaps = 15/175 (8%)

Query: 32  IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91
           + T   L   G+   L  +  +R+D   L+GFL+  +R  F  L  + GVGAR+A+ VLS
Sbjct: 1   MSTFYNLPHTGEKVVLLTQLIVREDAHLLYGFLTPPERSTFRELLKITGVGARMALAVLS 60

Query: 92  RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQA 151
            ++  EL +++ LQ++  + ++PGI  K A R+              ++  +       A
Sbjct: 61  GMSVAELSQAVTLQDAARLTRVPGIGKKTAERL-----------LLELKGKLGADLGPLA 109

Query: 152 HICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
              S    A + ++ALV LGY + +A  A+ +V          S+ I+L+L+A+S
Sbjct: 110 GAASPSDHATDILNALVALGYSEKEALAAIKNV----PAGTGVSEGIKLSLKALS 160


>gi|290890055|ref|ZP_06553138.1| hypothetical protein AWRIB429_0528 [Oenococcus oeni AWRIB429]
 gi|290480246|gb|EFD88887.1| hypothetical protein AWRIB429_0528 [Oenococcus oeni AWRIB429]
          Length = 178

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/187 (23%), Positives = 83/187 (44%), Gaps = 13/187 (6%)

Query: 19  IDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSV 78
           IDV G+ + ++ P           D  T+F E  +R +QI L+GF +  +R  F  L +V
Sbjct: 3   IDVNGIGFRVFTPNPYEYNQ---NDQTTIFTEQIVRDNQISLYGFKTVKERNLFQKLLNV 59

Query: 79  QGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSV 138
            G+G + A+ +++      L+ ++     K + + PGI  K A +I+ +LKGK    S  
Sbjct: 60  SGIGPKSALAIIAGGDRDGLIAAVENGKPKYLTKFPGIGNKTAQQIVLDLKGKLGDFSKN 119

Query: 139 VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQII 198
           +            ++    +   +A++ALV LG+   +    +   L     +      I
Sbjct: 120 IAP--------MKNLLENSAELDDALAALVALGFSSKEVNK-INPKLASLGEL-TTDAYI 169

Query: 199 RLALRAI 205
           +  L+ +
Sbjct: 170 QKGLKLL 176


>gi|33240204|ref|NP_875146.1| Holliday junction resolvasome DNA-binding subunit [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
 gi|44888420|sp|Q7VCI6|RUVA_PROMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|33237731|gb|AAP99798.1| Holliday junction resolvasome DNA-binding subunit [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
          Length = 222

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 55/219 (25%), Positives = 92/219 (42%), Gaps = 22/219 (10%)

Query: 1   MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56
           MI  + G    ++E+     VLI   GV Y +    R+L  L    +   L+V    R+D
Sbjct: 1   MISWLNGLKIEIWENGTRKGVLISCSGVGYEVQLLSRSLQLLNTSKELI-LWVHEVHRED 59

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
             +L GFL+ L+R  F  L SV GVG ++A+ +L +  A +L+ +I  +    +   PG+
Sbjct: 60  GSQLIGFLNKLERDLFRKLISVSGVGPQLAISLLEKNPAEQLISAITKKKIAQLTSCPGV 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             K A R++ EL+ K   L     +  +        +    + A    S L+NL Y   +
Sbjct: 120 GKKTAERLVIELQNKLSDLIGSSLKKTNNH----LELEYETNVADEVRSTLLNLDYKNSE 175

Query: 177 ATTAVVSVLKKEKNI-------------ADDSQIIRLAL 202
              A +      K+I              D   +++  L
Sbjct: 176 IEKAFLEFETSSKSIRSKAQESFEVSKGLDFETLLKETL 214


>gi|251771977|gb|EES52549.1| probable holliday junction DNA helicase (RuvA) [Leptospirillum
           ferrodiazotrophum]
          Length = 211

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 79/202 (39%), Gaps = 6/202 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ--DQI 58
           MI ++ G IE    D+V++    V Y +      +S L       +L       +  +  
Sbjct: 1   MIARLFGTIEETGSDWVILRAGAVGYRVLLSPYAMSQLSAREKEISLRTFLLWGEHQETP 60

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L GFL   + + F  ++ + G+G   A+ ++S    +   E+I   +   + ++ G+  
Sbjct: 61  LLVGFLDAAEEELFHEIRRIGGLGPTKAIRMISLPPGS-FWEAIASGDVGRLRKLKGVGE 119

Query: 119 KIASRIMTELKGKAISLSSVVQQD--MSCVNKEQAHICSMPSFAINAISALVN-LGYGQD 175
             A ++++EL+ +  SL S    D   S  +       S           LV   G+   
Sbjct: 120 TTAKKLVSELRDRVPSLISASPADSLSSGGSPLPEGPLSPRGAVAAVREVLVAQFGHSPS 179

Query: 176 QATTAVVSVLKKEKNIADDSQI 197
           +A   +   L +  +   + ++
Sbjct: 180 EADAMIRRALSRNPSARTEEEL 201


>gi|194246569|ref|YP_002004208.1| Holliday junction resolvasome, DNA-binding subunit [Candidatus
           Phytoplasma mali]
 gi|254767381|sp|B3R0J1|RUVA_PHYMT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|193806926|emb|CAP18355.1| Holliday junction resolvasome, DNA-binding subunit [Candidatus
           Phytoplasma mali]
          Length = 186

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 84/206 (40%), Gaps = 23/206 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +    +++V++D   + Y I           +I      FV  H++++   L
Sbjct: 1   MYSYIKGKVVNNGQNFVIVDNNNIGYHIIVSNPYFY---EINKEYKFFVHFHIKENLQIL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF  + +  +F  L  V  +G + A+ +       ++ ++I   ++  + + PGI +K 
Sbjct: 58  YGFNDNKNLLFFKKLLDVPTIGPKSALMLSETDNLEQVFQAIENNDNVYLRKFPGIGIKS 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+ +LKG  I                 +    +          L+NLG+ + +  + 
Sbjct: 118 AQQIILKLKGDLI----------------FSEKIILNPKKTELEKILLNLGFVKKEIKSV 161

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +     +  +   +++  L  ++
Sbjct: 162 LNQI----DDKKELELMLKEVLLKLA 183


>gi|32473207|ref|NP_866201.1| holliday junction DNA helicase ruvA [Rhodopirellula baltica SH 1]
 gi|81661574|sp|Q7USB0|RUVA_RHOBA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|32397886|emb|CAD73887.1| probable holliday junction DNA helicase ruvA [Rhodopirellula
           baltica SH 1]
 gi|327540460|gb|EGF27045.1| holliday junction DNA helicase ruvA [Rhodopirellula baltica WH47]
          Length = 207

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 85/205 (41%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQI- 58
           MI  I G +  + E  V+I      Y +Y    T   L  +IG+   L    ++  +   
Sbjct: 1   MIVSIAGKLVQVGEISVIIQAAPFDYEVYVGDYTRRQLQNQIGNEVRLHTLDYIEGNAQG 60

Query: 59  -----RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113
                RL GF +  +RQ+F L  SV GVG + A+  + R    EL   I  Q++K ++ +
Sbjct: 61  GRLTPRLIGFSTLPERQFFDLFCSVDGVGVKKALRAMVR-PVKELAVLIEEQDAKTLSAL 119

Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           PGI    + +++ +L+ K    + +V        +    +        +   ALV LG+ 
Sbjct: 120 PGIGPATSEKVIAKLRRKMPRFALMV-----AGGEVADAMEVESPIVSDTYDALVTLGHS 174

Query: 174 QDQATTAVVSVLKKEKNIADDSQII 198
           +  A   +   L   K   D   ++
Sbjct: 175 ESDARKLIDETLATGKKFKDTESLL 199


>gi|254246308|ref|ZP_04939629.1| DNA recombination protein, RuvA [Burkholderia cenocepacia PC184]
 gi|124871084|gb|EAY62800.1| DNA recombination protein, RuvA [Burkholderia cenocepacia PC184]
          Length = 164

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 48/177 (27%), Positives = 88/177 (49%), Gaps = 15/177 (8%)

Query: 30  CPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGV 89
            P+ T   L + G+   L  +  +R+D   L+GFL+  +R  F  L  + G+GAR+A+ V
Sbjct: 1   MPMSTFYNLPQTGERVVLLTQQIVREDAHLLYGFLTPQERTTFRELLKITGIGARMALAV 60

Query: 90  LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKE 149
           LS ++  EL +++ +Q++  + ++PGI  K A R+              ++  +      
Sbjct: 61  LSGMSVQELAQAVTMQDAARLTRLPGIGKKTAERL-----------LLELKGKLGADLGA 109

Query: 150 QAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
            A   S    A + ++AL+ LGY + +   A+ +V          S+ I+LAL+A+S
Sbjct: 110 LAGAASASDHATDILNALLALGYSEKEGLAAIKNV----PAGTGVSEGIKLALKALS 162


>gi|224370135|ref|YP_002604299.1| RuvA [Desulfobacterium autotrophicum HRM2]
 gi|259495639|sp|C0QKP5|RUVA_DESAH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|223692852|gb|ACN16135.1| RuvA [Desulfobacterium autotrophicum HRM2]
          Length = 214

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/204 (22%), Positives = 79/204 (38%), Gaps = 8/204 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCP----IRTLSCLGKIGDFCTLFVETHMRQD 56
           MIG ++G +  L  D VL+ V  V Y I  P        + L        ++     RQ 
Sbjct: 1   MIGFLQGKVLNLEADNVLLLVNQVGYEILLPATVVASVQNKLSDEFLNLYIYYHQTDRQP 60

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
           +  L GF S  ++ +F L  +V  +G   A   +   + + +  +I  ++   +A + GI
Sbjct: 61  KPVLIGFDSAEEKDFFQLFITVDAIGPLKAAKAME-HSVSTIARAIENKDVAFLATLKGI 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP--SFAINAISALV-NLGYG 173
             + A +I+  L GKA        +  +     +    S+P        +  LV  LG+ 
Sbjct: 120 GRRTAQKIVAALHGKAGRFLLAADEAGAGDGVSKTGTPSLPIQKAIDQVVDVLVQQLGHT 179

Query: 174 QDQATTAVVSVLKKEKNIADDSQI 197
              A   V   L ++  I     +
Sbjct: 180 PSAAKMMVAQALDRDPEIMTPEAL 203


>gi|312793294|ref|YP_004026217.1| holliday junction DNA helicase ruva [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180434|gb|ADQ40604.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 197

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 55/208 (26%), Positives = 96/208 (46%), Gaps = 15/208 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD--QI 58
           MI  I G I+ ++ +YV+++   V   I+C     S    +G    ++V     ++  ++
Sbjct: 1   MIDSIVGIIQEVFSNYVILNYNNVYIKIFCNGTKFSEF--LGKEKKVYVSLKFNENLSEL 58

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
             +GFL+  +R+ F+ LQ V GVG+++A+ +LS I   EL+  I   N   + ++ GI  
Sbjct: 59  ECYGFLTREERELFLKLQKVTGVGSKLALQILSSIDFQELIVEIAKGNVARLEKVKGIGK 118

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K ASRI+ ELK        V           +               AL++LGY  D+  
Sbjct: 119 KTASRIILELKETLKKEFKVAATTGKEEKTYEK--------LEEISLALLSLGYDIDEVN 170

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
             + S   ++ +       I+LAL+ +S
Sbjct: 171 QVLSS---EDFSELSLEDGIKLALKKLS 195


>gi|239618103|ref|YP_002941425.1| RuvA domain protein [Kosmotoga olearia TBF 19.5.1]
 gi|259495648|sp|C5CFS3|RUVA_KOSOT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|239506934|gb|ACR80421.1| RuvA domain protein [Kosmotoga olearia TBF 19.5.1]
          Length = 195

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 89/206 (43%), Gaps = 14/206 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G I  +  + V +        I C   T+  L        L   +        +
Sbjct: 1   MIKGVEGEITEISGNEVTLKAGQFYLNILCSTNTIKELSLSAKVHLLTYLSFSADRAPEI 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +   F++L     +G ++A+ +LS  +   L + I  ++   ++++PG+  K 
Sbjct: 61  YGFKDRAEYNVFLMLLKANKIGPKMALKILSATSPEMLQKMIASKDISGLSRLPGLGKKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+++EL       +    +++S               + +A+ AL  LG+    A  A
Sbjct: 121 AERLVSELYDLVKDYAVEFPKELS-------------DVSEDAVGALTALGFDMTSAKLA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           V  VLK++  + +  +++R ALR ++
Sbjct: 168 VNEVLKEQ-TVENTQELVRKALRKLN 192


>gi|225851116|ref|YP_002731350.1| holliday junction DNA helicase RuvA [Persephonella marina EX-H1]
 gi|225645836|gb|ACO04022.1| holliday junction DNA helicase RuvA [Persephonella marina EX-H1]
          Length = 179

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 89/206 (43%), Gaps = 30/206 (14%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG I+   +D  +ID+  V      P         + D   +F+E  ++ D++ L
Sbjct: 1   MIEFLKGKIKHKKDDIYIIDLGTVALRFRSPS-------DLKDQSVVFIEMFIKDDRVEL 53

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F  L S+ GVG + A+ +L   +     E +  ++   +    G+  K 
Sbjct: 54  YGFKTPEEREIFNRLLSINGVGVKHALSILRSFSPERFFEIVENRDITTLTTAQGVGKKT 113

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ EL+GK   +                          + + AL  LG+ + +  + 
Sbjct: 114 AQRIVLELQGKLDFI--------------------ENELLKDLVDALTGLGFDKKRVLSV 153

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
              VLK+  N     + ++LAL+ ++
Sbjct: 154 AKDVLKETDN---LEKALKLALQKLA 176


>gi|312877191|ref|ZP_07737160.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796000|gb|EFR12360.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 197

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 97/208 (46%), Gaps = 15/208 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD--QI 58
           MI  I G I+ ++ +YV+I+   +   I+C     S    +G    ++V     ++  ++
Sbjct: 1   MIDSIVGIIQEVFSNYVIINYNNIYIKIFCNGTKFSEF--LGKEKKVYVSLKFNENLSEL 58

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
             +GFL+  +R+ F+ LQ V GVG+++A+ +LS I   EL+  I   N   + ++ GI  
Sbjct: 59  ECYGFLTREERELFLKLQKVTGVGSKLALQILSSIDFQELIVEIAKGNVARLEKVKGIGK 118

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K ASRI+ ELK        VV          +               AL++LGY  D+  
Sbjct: 119 KTASRIILELKETLKKEFKVVATTGKEEKTYEK--------LEEISLALLSLGYDIDEVN 170

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
             + S   ++ +       I+LAL+ +S
Sbjct: 171 QVLSS---EDFSELSLEDGIKLALKKLS 195


>gi|300692490|ref|YP_003753485.1| subunit A of RuvABC Holliday junction resolvasome, regulatory
           subunit [Ralstonia solanacearum PSI07]
 gi|299079550|emb|CBJ52228.2| subunit A of RuvABC Holliday junction resolvasome, regulatory
           subunit [Ralstonia solanacearum PSI07]
          Length = 162

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 54/175 (30%), Positives = 90/175 (51%), Gaps = 15/175 (8%)

Query: 32  IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91
           + T   L   G+   L  +  +R+D   L+GF +  +R+ F  L  + G+GAR+A+ VLS
Sbjct: 1   MSTFYNLPATGEKVVLLTQQIVREDAHLLYGFGTAAERETFRQLIKISGIGARIALAVLS 60

Query: 92  RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQA 151
            ++  EL +++ LQ +  + +IPGI  K A R++ ELKGK  +    V    +       
Sbjct: 61  GMSVAELAQAVTLQEAGRLTRIPGIGKKTAERLLLELKGKLGADLGAVPGGPA------- 113

Query: 152 HICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
               M   A++ ++AL+ LGY   +A  A+  V          S+ I+LAL+A+S
Sbjct: 114 ----MSDDAVDVLNALLALGYSDKEAALAIKQV----PTGTGVSEGIKLALKALS 160


>gi|315645785|ref|ZP_07898906.1| Holliday junction DNA helicase RuvA [Paenibacillus vortex V453]
 gi|315278546|gb|EFU41860.1| Holliday junction DNA helicase RuvA [Paenibacillus vortex V453]
          Length = 178

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 43/177 (24%), Positives = 75/177 (42%), Gaps = 3/177 (1%)

Query: 29  YCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMG 88
           +CP        K     T++   H+R D I LFGF S  +++ F  L  V G+G RVA+G
Sbjct: 2   FCPNP--YAFAKTEGTVTVYTHHHVRDDAILLFGFPSREEQKLFRKLIEVSGIGPRVALG 59

Query: 89  VLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNK 148
           +L   +   +V +I  +N   + ++PGI  K A R++ +LK K                 
Sbjct: 60  ILGGGSPDHVVSAIYQENVSFLVKLPGIGKKTAQRMILDLKDKLEGF-GNATMMTGLFAI 118

Query: 149 EQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           ++    +  S    A   L  LGY   +     + +     +      +++ AL+ +
Sbjct: 119 QEPEAENDGSAWSEAREGLKALGYTDSELDKVWLKIKDSGASGESVDVLMKRALQQL 175


>gi|256852230|ref|ZP_05557616.1| Holliday junction DNA helicase RuvA [Lactobacillus jensenii
           27-2-CHN]
 gi|260661738|ref|ZP_05862649.1| Holliday junction DNA helicase RuvA [Lactobacillus jensenii
           115-3-CHN]
 gi|282932642|ref|ZP_06338056.1| holliday junction DNA helicase RuvA [Lactobacillus jensenii 208-1]
 gi|297205604|ref|ZP_06923000.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           jensenii JV-V16]
 gi|256615276|gb|EEU20467.1| Holliday junction DNA helicase RuvA [Lactobacillus jensenii
           27-2-CHN]
 gi|260547485|gb|EEX23464.1| Holliday junction DNA helicase RuvA [Lactobacillus jensenii
           115-3-CHN]
 gi|281303216|gb|EFA95404.1| holliday junction DNA helicase RuvA [Lactobacillus jensenii 208-1]
 gi|297150182|gb|EFH30479.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           jensenii JV-V16]
          Length = 193

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 52/201 (25%), Positives = 96/201 (47%), Gaps = 16/201 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G +  +   ++ +DV G  + I+   +  S     G    ++VE  +R + I L
Sbjct: 1   MYEYLEGTVTIITPSFIALDVGGQGFKIF-SAKPYSY--SEGQRIRVYVEQVVRDNDISL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  ++Q F+ L SV G+G + AM +++  ++  L ++I       + + PG+  K 
Sbjct: 58  YGFESSDEKQLFLKLLSVSGIGPKSAMAIMAAESSDSLAKAIENGEVNYLTKFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK   L S V+QD+   +              +A+ AL  LGY + +    
Sbjct: 118 ASQIVLDLKGK---LGSYVEQDLFTADT--------SQALSDALLALSALGYTKKEVEKV 166

Query: 181 VVSVLKKEKNIADDSQIIRLA 201
              + K   + AD  + I+  
Sbjct: 167 KPKLEKSSFDTAD--EYIKEG 185


>gi|116494312|ref|YP_806046.1| Holliday junction DNA helicase RuvA [Lactobacillus casei ATCC 334]
 gi|191637648|ref|YP_001986814.1| Holliday junction DNA helicase RuvA [Lactobacillus casei BL23]
 gi|239629698|ref|ZP_04672729.1| holliday junction resolvasome, DNA-binding subunit [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|301065824|ref|YP_003787847.1| holliday junction resolvasome, DNA-binding subunit [Lactobacillus
           casei str. Zhang]
 gi|122264259|sp|Q03B18|RUVA_LACC3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560092|sp|B3WC55|RUVA_LACCB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|116104462|gb|ABJ69604.1| Holliday junction DNA helicase subunit RuvA [Lactobacillus casei
           ATCC 334]
 gi|190711950|emb|CAQ65956.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus
           casei BL23]
 gi|239528384|gb|EEQ67385.1| holliday junction resolvasome, DNA-binding subunit [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|300438231|gb|ADK17997.1| Holliday junction resolvasome, DNA-binding subunit [Lactobacillus
           casei str. Zhang]
 gi|327381703|gb|AEA53179.1| Holliday junction DNA helicase RuvA [Lactobacillus casei LC2W]
 gi|327384869|gb|AEA56343.1| Holliday junction DNA helicase RuvA [Lactobacillus casei BD-II]
          Length = 198

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 93/206 (45%), Gaps = 11/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G I+ +   Y++IDV G+ + +           + G+   ++V+  +R +   L
Sbjct: 1   MYEYFEGIIQAVTPAYIVIDVHGIGFRLLV-ANPYHF--EAGEQKRVYVQLIIRDNDQTL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    D++ F  L +V G+G + A+ +L+ +++  L  +I   + K + + PGI  K 
Sbjct: 58  YGFEGAADKRTFNQLLTVTGIGPKSALAILANVSSGGLATAIAQDDVKFLTKFPGIGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A++I+ +LKGK  +        ++ V  +     +    A+ A+      GY Q      
Sbjct: 118 AAQIILDLKGKITTDGQPAAAAIAPVASDVDSELADALAALVAL------GYPQRTVDGL 171

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
             ++  K  +       +R  LR +S
Sbjct: 172 TDTL--KAFSAKTTDAYLREGLRLLS 195


>gi|283954372|ref|ZP_06371893.1| holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283794171|gb|EFC32919.1| holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 183

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 48/206 (23%), Positives = 94/206 (45%), Gaps = 25/206 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           M+  I+G I      ++++    G+ Y I+  +   + + +  +    F+   +++D  +
Sbjct: 1   MVVGIEGIITKKEPTFIIVKCASGLSYGIFISLFCSAKI-QTQEKHEFFITQIIKEDSNK 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
            +GFL   +++ F +L  V GVGA  AM V S +      +++ L +  V+ ++PGI  K
Sbjct: 60  FYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDVNSFYKALSLSDESVLKKVPGIGPK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ EL    + L +V                        A++AL+ LG+ Q++  +
Sbjct: 120 SAKRIIVELSDTNMKLENV------------------SDDKSEALAALLTLGFKQEKIIS 161

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205
            + S           S++I+ ALR +
Sbjct: 162 VLAS-----SQAIGTSELIKEALRKL 182


>gi|296122693|ref|YP_003630471.1| helix-hairpin-helix motif protein [Planctomyces limnophilus DSM
           3776]
 gi|296015033|gb|ADG68272.1| helix-hairpin-helix motif protein [Planctomyces limnophilus DSM
           3776]
          Length = 207

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 94/205 (45%), Gaps = 14/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQI- 58
           MI +I G +  L ED V +++    Y +  P      L  K+G+  +L    ++  +   
Sbjct: 1   MITRITGKLVRLSEDIVRLEIGAFEYEVLVPEFVRRQLQPKLGEVVSLCTIDYLDGNPQQ 60

Query: 59  -----RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113
                RL GFLS+ + ++F ++ SV G+G +  +  + R    E+ E+I  Q+ K +  +
Sbjct: 61  GRLVPRLAGFLSETELEFFEMICSVDGMGVKKTLRAMVR-PVREIAEAIEEQSIKELTLL 119

Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
           PG+   +A RI+ +L+ K    + +V +++              +    A  AL+ LG+ 
Sbjct: 120 PGVGPAMAERIVAKLRRKMTKFALMVAREV------PREADVDRNVLTEAYEALMALGHS 173

Query: 174 QDQATTAVVSVLKKEKNIADDSQII 198
             +A   +  V  ++K   D   ++
Sbjct: 174 SIEARDKIDQVASQKKKFKDVQDVL 198


>gi|227534464|ref|ZP_03964513.1| crossover junction endoribonuclease subunit A [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|227187863|gb|EEI67930.1| crossover junction endoribonuclease subunit A [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
          Length = 212

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 93/206 (45%), Gaps = 11/206 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G I+ +   Y++IDV G+ + +           + G+   ++V+  +R +   L
Sbjct: 15  MYEYFEGIIQAVTPAYIVIDVHGIGFRLLV-ANPYHF--EAGEQKRVYVQLIIRDNDQTL 71

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    D++ F  L +V G+G + A+ +L+ +++  L  +I   + K + + PGI  K 
Sbjct: 72  YGFEGAADKRTFNQLLTVTGIGPKSALAILANVSSGGLATAIAQDDVKFLTKFPGIGKKT 131

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A++I+ +LKGK  +        ++ V  +     +    A+ A+      GY Q      
Sbjct: 132 AAQIILDLKGKITTDGQPAAAAIAPVASDVDSELADALAALVAL------GYPQRTVDGL 185

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
             ++  K  +       +R  LR +S
Sbjct: 186 TDTL--KAFSAKTTDAYLREGLRLLS 209


>gi|323359952|ref|YP_004226348.1| holliday junction resolvasome, DNA-binding subunit [Microbacterium
           testaceum StLB037]
 gi|323276323|dbj|BAJ76468.1| holliday junction resolvasome, DNA-binding subunit [Microbacterium
           testaceum StLB037]
          Length = 206

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 11/175 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G    + ED ++I V GV + +    +  +    +GD   +     +R+D + L
Sbjct: 1   MISSLHGTAAHVAEDSLVIVVGGVGFSVAVTSQ-FARTVHVGDDVHVHTNLIVREDALSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  +   F  L SV GVG + A+GVLS +T  ++ +++   +     ++ GI  K 
Sbjct: 60  YGFESREELTVFTQLISVTGVGPKSALGVLSSLTVPQIAQAVTDDDDAPFRRVSGIGPKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175
           A  I+ +L GK   + +     ++                +    ALV LG+ + 
Sbjct: 120 AKLIVVQLAGKLAVVPAAAPAAVAGHG----------QVPLQVTQALVGLGWTER 164


>gi|213420857|ref|ZP_03353923.1| Holliday junction DNA helicase motor protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 106

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 50/97 (51%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           IG+++G I       VL++  GV Y ++ P+     L + G    +F    +R+D   L+
Sbjct: 9   IGRLRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLY 68

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATEL 98
           GF +  +R  F  L    GVG ++A+ +LS ++A + 
Sbjct: 69  GFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQF 105


>gi|313473093|ref|ZP_07813577.1| holliday junction DNA helicase RuvA [Lactobacillus jensenii 1153]
 gi|313448796|gb|EEQ67671.2| holliday junction DNA helicase RuvA [Lactobacillus jensenii 1153]
          Length = 195

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 53/201 (26%), Positives = 96/201 (47%), Gaps = 16/201 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G +  +   ++ +DV G  + IY   +  S     G    ++VE  +R + I L
Sbjct: 1   MYEYLEGTVTIITPSFIALDVGGQGFKIY-SAKPYSY--SEGQRIRVYVEQVVRDNDISL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  ++Q F+ L SV G+G + AM +++  ++  L ++I       + + PG+  K 
Sbjct: 58  YGFESGDEKQLFLKLLSVSGIGPKSAMAIMAAESSDSLAKAIENGEVNYLTKFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK   L S V+QD+   +              +A+ AL  LGY + +    
Sbjct: 118 ASQIVLDLKGK---LGSYVEQDLFTADT--------SQALSDALLALSALGYTKKEVEKV 166

Query: 181 VVSVLKKEKNIADDSQIIRLA 201
              + K   + AD  + I+  
Sbjct: 167 KPKLEKSTYDTAD--EYIKEG 185


>gi|28572651|ref|NP_789431.1| holliday junction DNA helicase RuvA [Tropheryma whipplei TW08/27]
 gi|28410783|emb|CAD67169.1| holliday junction DNA helicase RuvA [Tropheryma whipplei TW08/27]
          Length = 174

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 98/185 (52%), Gaps = 15/185 (8%)

Query: 22  QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGV 81
            G+ +++  P    S   ++     L+    +R+D + L+GF S L+   F  L ++ GV
Sbjct: 2   HGIGFLVRVP---QSFNPEVDAEVKLYTSLQVREDSVSLYGFASVLECTVFEQLITISGV 58

Query: 82  GARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQ 141
           G RVA+ +LS +T  E+  +++  + K + ++ G+  K+A  I+ +L GK  S+    ++
Sbjct: 59  GPRVALAILSVLTPAEVAAAVLEGDDKPLQRVSGVGKKLAGTIVLQLAGKLTSVPLENRK 118

Query: 142 DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLA 201
               V++           +   + AL+ LG+ + ++  AV SVL+K++++    +I+R A
Sbjct: 119 QEQAVDR-----------SAEIVQALIGLGWQRQESAAAVESVLEKDQSL-TMPEILRNA 166

Query: 202 LRAIS 206
           LR ++
Sbjct: 167 LRYLA 171


>gi|238855608|ref|ZP_04645909.1| holliday junction DNA helicase RuvA [Lactobacillus jensenii 269-3]
 gi|260665332|ref|ZP_05866180.1| Holliday junction DNA helicase RuvA [Lactobacillus jensenii
           SJ-7A-US]
 gi|282933018|ref|ZP_06338412.1| holliday junction DNA helicase RuvA [Lactobacillus jensenii 208-1]
 gi|238831752|gb|EEQ24088.1| holliday junction DNA helicase RuvA [Lactobacillus jensenii 269-3]
 gi|260560836|gb|EEX26812.1| Holliday junction DNA helicase RuvA [Lactobacillus jensenii
           SJ-7A-US]
 gi|281302872|gb|EFA95080.1| holliday junction DNA helicase RuvA [Lactobacillus jensenii 208-1]
          Length = 193

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 53/201 (26%), Positives = 96/201 (47%), Gaps = 16/201 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   ++G +  +   ++ +DV G  + IY   +  S     G    ++VE  +R + I L
Sbjct: 1   MYEYLEGTVTIITPSFIALDVGGQGFKIY-SAKPYSY--SEGQRIRVYVEQVVRDNDISL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  ++Q F+ L SV G+G + AM +++  ++  L ++I       + + PG+  K 
Sbjct: 58  YGFESGDEKQLFLKLLSVSGIGPKSAMAIMAAESSDSLAKAIENGEVNYLTKFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK   L S V+QD+   +              +A+ AL  LGY + +    
Sbjct: 118 ASQIVLDLKGK---LGSYVEQDLFTADT--------SQALSDALLALSALGYTKKEVEKV 166

Query: 181 VVSVLKKEKNIADDSQIIRLA 201
              + K   + AD  + I+  
Sbjct: 167 KPKLEKSTYDTAD--EYIKEG 185


>gi|293389007|ref|ZP_06633490.1| holliday junction DNA helicase RuvA [Enterococcus faecalis S613]
 gi|291081647|gb|EFE18610.1| holliday junction DNA helicase RuvA [Enterococcus faecalis S613]
          Length = 163

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 69/145 (47%), Gaps = 2/145 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  +   Y++++  G+ Y I          GK+     L++   +R+D   L
Sbjct: 20  MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 78

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMK 119
           FGF S  ++Q F+ L SV G+G +  + +++ +     L+ +I  ++   + + PG+  K
Sbjct: 79  FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 138

Query: 120 IASRIMTELKGKAISLSSVVQQDMS 144
            A +++ +LKGK   L S       
Sbjct: 139 TAQQMILDLKGKLGELESSEAAGAG 163


>gi|293384502|ref|ZP_06630374.1| holliday junction DNA helicase RuvA [Enterococcus faecalis R712]
 gi|291078181|gb|EFE15545.1| holliday junction DNA helicase RuvA [Enterococcus faecalis R712]
          Length = 163

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 69/145 (47%), Gaps = 2/145 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  +   Y++++  G+ Y I          GK+     L++   +R+D   L
Sbjct: 20  MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 78

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMK 119
           FGF S  ++Q F+ L SV G+G +  + +++ +     L+ +I  ++   + + PG+  K
Sbjct: 79  FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 138

Query: 120 IASRIMTELKGKAISLSSVVQQDMS 144
            A +++ +LKGK   L S       
Sbjct: 139 TAQQMILDLKGKLGELESSEAAGGG 163


>gi|89068047|ref|ZP_01155464.1| Holliday junction DNA helicase motor protein [Oceanicola granulosus
           HTCC2516]
 gi|89046286|gb|EAR52343.1| Holliday junction DNA helicase motor protein [Oceanicola granulosus
           HTCC2516]
          Length = 222

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 61/221 (27%), Positives = 114/221 (51%), Gaps = 17/221 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG++ G ++    D+VLI V GV Y++Y   R ++ L   G+  +LF +  +R+D ++L
Sbjct: 1   MIGRLTGRLDYRAGDHVLISVGGVGYVVYVSERVMAALPGNGEPVSLFTDLLVREDLLQL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF + ++++W  LL SVQG+GA+ ++ +L  + A  +  +I L +++ I+   G+  K 
Sbjct: 61  FGFTTLVEKEWHRLLMSVQGIGAKASLAILGALGADGVSRAIALGDARAISVAKGVGPKT 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP---------------SFAINAIS 165
           A R++ EL+ KA  + ++     + + +  A                     +   +A+S
Sbjct: 121 AERVVRELRDKAPGVMALGGSIEAALGEVPAAADDGAVLEPADAAPPRAPAGAAQSDALS 180

Query: 166 ALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           ALVNLGY       A           ++ + +IR AL+ ++
Sbjct: 181 ALVNLGYAPA--EAAGAIAEATGAGESETAGLIRAALKLLA 219


>gi|222529107|ref|YP_002572989.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor bescii
           DSM 6725]
 gi|254766939|sp|B9MRB2|RUVA_ANATD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|222455954|gb|ACM60216.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 197

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 54/208 (25%), Positives = 96/208 (46%), Gaps = 15/208 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD--QI 58
           MI  I G I+ ++ +YV+++   +   I+C     S    +G    ++V     ++  ++
Sbjct: 1   MIDSIVGIIQEVFSNYVILNYNNLYIKIFCNSTKFSEF--LGKEKRVYVSLKFNENLSEL 58

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
             +GFL+  +R+ F+ LQ V GVG+++A+ +LS I   EL+  I   N   + ++ GI  
Sbjct: 59  ECYGFLTREERELFLKLQKVTGVGSKLALQILSSIDFQELIVEIAKGNVAKLEKVKGIGK 118

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K ASRI+ ELK        V           +               AL++LGY  D+  
Sbjct: 119 KTASRIILELKETLKKEFKVASTSGKEEKTYEK--------LEEISLALLSLGYDIDEVN 170

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
             + S   ++ +       I+LAL+ +S
Sbjct: 171 QVLSS---EDFSELSLEDGIKLALKKLS 195


>gi|309811443|ref|ZP_07705229.1| Holliday junction DNA helicase RuvA [Dermacoccus sp. Ellin185]
 gi|308434590|gb|EFP58436.1| Holliday junction DNA helicase RuvA [Dermacoccus sp. Ellin185]
          Length = 201

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 7/167 (4%)

Query: 40  KIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELV 99
           + G+   L     +R+D + LFGF  D +R  F  +Q+V GVG R+A+ +L+     +L 
Sbjct: 39  RPGESMRLATSLVVREDSLTLFGFADDDERALFEQVQTVSGVGPRLALAMLAVHPPQQLA 98

Query: 100 ESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF 159
            +I   + + + ++PGI  K A RI+ EL+ K +S S    Q           +    + 
Sbjct: 99  TAIAGGDVRALTKVPGIGKKGAERIVLELRDKVVSASGDGGQAAPQA------VVPATAG 152

Query: 160 AINAISALVNLGYGQDQATTAVVSVLKK-EKNIADDSQIIRLALRAI 205
                 AL+ LG+   QA  AV  V  + E   A+   ++RLALR +
Sbjct: 153 GDQVAEALIGLGWSAKQAEDAVAKVAARPEAEGANTPTVLRLALREL 199


>gi|312134958|ref|YP_004002296.1| holliday junction DNA helicase ruva [Caldicellulosiruptor
           owensensis OL]
 gi|311775009|gb|ADQ04496.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor
           owensensis OL]
          Length = 197

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 53/208 (25%), Positives = 95/208 (45%), Gaps = 15/208 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD--QI 58
           MI  I G I+ ++ +YV+++   +   I+C     S    +G    ++V     ++  ++
Sbjct: 1   MIDSIVGTIQEVFSNYVILNYNNLYIKIHCNGAKFSEF--LGKEKRVYVSLKFNENLSEL 58

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
             +GFL+  +R+ F+ LQ V GVG+++A+ +L+ I   EL+  I   N   + ++ GI  
Sbjct: 59  ECYGFLTREERELFLKLQKVTGVGSKLALQILASIDFQELIVEIAKGNVARLEKVKGIGK 118

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K ASRI+ ELK        V           +               AL++LGY  D+  
Sbjct: 119 KTASRIILELKETLKKEFKVAATTGKEEKTYEK--------LEEISLALLSLGYDIDEVN 170

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
             + S    + +       I+LAL+ +S
Sbjct: 171 QVLSS---GDFSELSLEDGIKLALKKLS 195


>gi|222823639|ref|YP_002575213.1| Holliday junction DNA helicase, DNA-binding subunit [Campylobacter
           lari RM2100]
 gi|254766949|sp|B9KFX7|RUVA_CAMLR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|222538861|gb|ACM63962.1| Holliday junction DNA helicase, DNA-binding subunit [Campylobacter
           lari RM2100]
          Length = 183

 Score =  105 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 85/207 (41%), Gaps = 25/207 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  I+G +      +V++    GV Y +Y  +       +      L +   +++D  +
Sbjct: 1   MIVAIEGIVSKKEPTFVVLKTSSGVSYGVYVSLFCSGNF-EKDQKIELSITQIIKEDSHK 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL   +++ F LL  + G+GA  AM + S +       ++   +  V  ++PGI  K
Sbjct: 60  LYGFLDTNEQRMFELLIKISGIGATTAMALCSSLDTNTFYTALQSGDESVFKKVPGIGPK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ EL    I++ +  Q     +    +                   G+ Q+    
Sbjct: 120 SAKRIIAELSDAKINIENSNQDHAQALAALLSL------------------GFKQENILK 161

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
            + +         + S++I+ AL+ ++
Sbjct: 162 VLRT-----CESQNTSELIKEALKKLA 183


>gi|302872058|ref|YP_003840694.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574917|gb|ADL42708.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 197

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 53/208 (25%), Positives = 95/208 (45%), Gaps = 15/208 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD--QI 58
           MI  I G I+ ++ +Y++++   +   I+C     S    +G    ++V     ++  ++
Sbjct: 1   MIDSIMGTIQEVFSNYIILNYNNLYIKIHCNGAKFSEF--LGKEKRVYVSLKFNENLSEL 58

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
             +GFL+  +R+ F+ LQ V GVG+++A+ +LS I   EL+  I   N   + ++ GI  
Sbjct: 59  ECYGFLTREERELFLKLQKVTGVGSKLALQILSSIDFQELIVEIAKGNVARLEKVKGIGK 118

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K ASRI+ ELK        V           +               AL++LGY  D+  
Sbjct: 119 KTASRIILELKETLKKEFKVAATTGKEEKTYEK--------LEEISLALLSLGYDIDEVN 170

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206
             + S    + +       I+LAL+ +S
Sbjct: 171 QVLSS---GDFSELSLEDGIKLALKKLS 195


>gi|237751366|ref|ZP_04581846.1| holliday junction DNA helicase motor protein [Helicobacter bilis
           ATCC 43879]
 gi|229372732|gb|EEO23123.1| holliday junction DNA helicase motor protein [Helicobacter bilis
           ATCC 43879]
          Length = 189

 Score =  104 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 95/205 (46%), Gaps = 19/205 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI ++KGNIE L    V ++V GV Y++   + T + L +     TL +   +R+D   L
Sbjct: 1   MIVRLKGNIEKLLPTGVELEVSGVTYMVEISLLTSAAL-QNKTHVTLEIAEIIREDSHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +R+ F+ L  V GVGA++A+ +LS  +  + +  +   N   +  + GI  K+
Sbjct: 60  YGFETRREREVFLQLLKVNGVGAKIALMILSSYSVEQFLAIVQTNNLAALKGVKGIGTKV 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM EL G                   Q+           A  ALV LG+   Q T A
Sbjct: 120 AGKIMLELAG-----------------YTQSIQTPNNVNVQLAHEALVALGFKDTQITQA 162

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +  +   +   + +++  L+ +
Sbjct: 163 LQGLSNEILQMP-PNDMVKAILQTL 186


>gi|330836553|ref|YP_004411194.1| Holliday junction ATP-dependent DNA helicase ruvA [Spirochaeta
           coccoides DSM 17374]
 gi|329748456|gb|AEC01812.1| Holliday junction ATP-dependent DNA helicase ruvA [Spirochaeta
           coccoides DSM 17374]
          Length = 209

 Score =  104 bits (259), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 85/197 (43%), Gaps = 12/197 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL----GKIGDFCTLFVETHMRQD 56
           MI  + G +  +     ++    + + I    +T S L     +      L      R+D
Sbjct: 1   MIHALTGILVSVTAHQAVLACGHMEFEIIISAQTASTLSQLSPEKRQHVRLLTYLQHRED 60

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
            + LFGFLS+ +R  F  LQ+V G+GA+ A+ +L  ++   L+ ++   + K +++IPG+
Sbjct: 61  AMVLFGFLSEQERIVFEQLQTVPGIGAKQAVKILGGMSLVTLLTALDQGDVKTLSRIPGV 120

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             K A R++  L+G  +                +A   S      +   AL  +GY + +
Sbjct: 121 GSKTAQRLILALRGTLVLEDDATPG--------KAPSPSATGRWTDLSEALQEMGYDRKK 172

Query: 177 ATTAVVSVLKKEKNIAD 193
               +  + K+ ++   
Sbjct: 173 VMEILARLEKEHESEMS 189


>gi|283781353|ref|YP_003372108.1| DNA recombination protein RuvA domain I [Pirellula staleyi DSM
           6068]
 gi|283439806|gb|ADB18248.1| DNA recombination protein RuvA domain I [Pirellula staleyi DSM
           6068]
          Length = 210

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/207 (25%), Positives = 97/207 (46%), Gaps = 18/207 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYC---PIRTLSCLGKIGDFCTLFVETHMRQD- 56
           MI +I   +  L +D  ++      Y +       RTLS    +G   +L    ++  D 
Sbjct: 1   MITRITAKLIQLTDDAAILSAPPFDYEVLIAAVSRRTLSS--SVGQEISLHTIHYLDGDP 58

Query: 57  -----QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIA 111
                  RL GF+S+++R++F +  SV GVGA+ A+  + R    E+   I  Q+++ ++
Sbjct: 59  SRGKVTPRLVGFVSEVEREFFEMFCSVDGVGAKKALRAMQR-PVQEISVMIEEQDAEGLS 117

Query: 112 QIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLG 171
            +PGI    A RI+ +L+ K    + +V ++ +   + +  +  +         AL  LG
Sbjct: 118 SLPGIGAATAERIIAKLRRKMSKFALLVARESAGETEIKRDVVELS------FEALRTLG 171

Query: 172 YGQDQATTAVVSVLKKEKNIADDSQII 198
           + +  A   + SVLK +K  AD   ++
Sbjct: 172 HSESDARKLLDSVLKSKKKFADVEAVL 198


>gi|320102187|ref|YP_004177778.1| holliday junction DNA helicase RuvA [Isosphaera pallida ATCC 43644]
 gi|319749469|gb|ADV61229.1| holliday junction DNA helicase RuvA [Isosphaera pallida ATCC 43644]
          Length = 232

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 95/215 (44%), Gaps = 18/215 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQ-- 57
           MI  ++G +E + ++  ++ V      ++    T   +  K+G+   L+   ++  +   
Sbjct: 1   MITLVRGILERVGQEEAILSVPPWEIEVWVTELTRRQIQTKLGEEIRLYTILNIEGNATM 60

Query: 58  ----IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113
                RL GFLS ++R++F +  SV GVG R A+  + +    +L  +I  Q+   +A  
Sbjct: 61  GRMSPRLIGFLSPVEREFFEVFCSVDGVGVRKALRAICQ-PVKDLARTIQDQDVATLATF 119

Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVN----------KEQAHICSMPSFAINA 163
           PG+   +A RI+ +L+ K    +  +       +             +   + P    + 
Sbjct: 120 PGVGEALAERIVAKLRRKVGKFALALGDPRVPASRFTASDLEDAPHSSSNATDPEIVRDV 179

Query: 164 ISALVNLGYGQDQATTAVVSVLKKEKNIADDSQII 198
            +AL+++G+ + QA  A+   L  +K     + +I
Sbjct: 180 YAALLSVGHTETQARQAIDQALSSKKAFRSVADMI 214


>gi|206603017|gb|EDZ39497.1| probable Holliday junction DNA helicase (RuvA) [Leptospirillum sp.
           Group II '5-way CG']
          Length = 208

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 80/201 (39%), Gaps = 7/201 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGD--FCTLFVETHMRQ--D 56
           MI ++ G      E+ V++    V Y ++    +   L    +     L ++    +  +
Sbjct: 1   MIARLWGVPVEWEEESVILRAGDVGYRVHLSPCSHQKLRSRPEGLVLELLIQHFWNEHLE 60

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L GF    ++  F  L+ V G+G   A+ +L+ I   + +  +   ++  +  + G+
Sbjct: 61  APLLAGFPDPEEQTLFNQLRKVPGLGPLSALRLLA-IPVGDFLTIVRDNDAGRLKGLKGV 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             K A +I+ EL+G    ++           K      S+     + +  +   G+   +
Sbjct: 120 GEKTARKILGELRGHVDWIAESTSGLSPASGKSPESPASLARSVQDVL--VRQFGHTPQE 177

Query: 177 ATTAVVSVLKKEKNIADDSQI 197
           A   V   L+++ +I+   ++
Sbjct: 178 AQRLVSEALRRQPSISSMEEL 198


>gi|325106603|ref|YP_004267671.1| Holliday junction DNA helicase subunit RuvA [Planctomyces
           brasiliensis DSM 5305]
 gi|324966871|gb|ADY57649.1| Holliday junction DNA helicase subunit RuvA [Planctomyces
           brasiliensis DSM 5305]
          Length = 208

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 15/206 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQD--- 56
           MI  I+G +  L E    +++      ++ P      L GKIG+   L    ++  +   
Sbjct: 1   MISSIRGELLALEETSAFLNIGAFTIEVFIPDFVRRQLQGKIGEPIELRTMAYLDGNPQK 60

Query: 57  ----QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQ 112
                 RL GF S  +  +F L+ SV G+G + A+  + R    E+  +I  Q++K ++ 
Sbjct: 61  GGRMTPRLVGFTSKAELAFFELICSVDGLGIKKALAAIVR-PVREVAAAIEQQDTKTLST 119

Query: 113 IPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           +PGI   +A RI+ +L+ K    + +V Q      +       M         AL+ LG+
Sbjct: 120 LPGIGPAVAERIVAKLRRKMTRFALMVDQASGEAYE------PMNDQVSETYEALLALGH 173

Query: 173 GQDQATTAVVSVLKKEKNIADDSQII 198
             D A   + + LK  K       ++
Sbjct: 174 SADDAHNKIDTALKSGKKFKSVEDML 199


>gi|187917906|ref|YP_001883469.1| Holliday junction DNA helicase RuvA [Borrelia hermsii DAH]
 gi|229560005|sp|B2S1L2|RUVA_BORHD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|119860754|gb|AAX16549.1| Holliday junction DNA helicase RuvA [Borrelia hermsii DAH]
          Length = 196

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 49/211 (23%), Positives = 96/211 (45%), Gaps = 21/211 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI KI G I    E  ++I      + +       + L ++ +   +    H+R+D+I+L
Sbjct: 1   MINKIYGKIIEKRESSIVIVALPFEFEVLVSSFCNAEL-RLLEDVEILTYLHLREDEIKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  +R+ F  L SV G+G R A+ +LS +   E  ++I  ++ K I+ + GI  K+
Sbjct: 60  FGFLNVSEREVFEELISVDGIGPRAALRMLSGMKYDEFRDAIEREDVKRISTVKGIGNKV 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I  +L+GK +    +                       +   ++VN+G+ +     A
Sbjct: 120 AGKIFLKLRGKLVKADELTSSVFK---------------FKDLEQSIVNMGFDRKLVVAA 164

Query: 181 VVSVL--KKEKNIADDSQ---IIRLALRAIS 206
           +  ++   +   + +  Q   + R  L+ +S
Sbjct: 165 IKEIMLIDEFLMLREVEQEQFLFRETLKRLS 195


>gi|302338526|ref|YP_003803732.1| Holliday junction DNA helicase RuvA [Spirochaeta smaragdinae DSM
           11293]
 gi|301635711|gb|ADK81138.1| Holliday junction DNA helicase RuvA [Spirochaeta smaragdinae DSM
           11293]
          Length = 202

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 83/213 (38%), Gaps = 19/213 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G I G     + +    + + +              +   + V    R+D + L
Sbjct: 1   MIESLTGTITGRQGTVLFLSTGAIEWALEATSSAAMKFASSKETVQIPVHLIHREDAMLL 60

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           F F S  +R  F  L  V G+G + A+ +LS + A   + ++  ++  +++ IPG+  K 
Sbjct: 61  FAFASKKERNLFRELLKVSGIGPKQAVRILSGMEADRFIAALENEDVDLLSSIPGVGKKS 120

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I+  L+GK        +     +                 + AL  +G+ +  A  A
Sbjct: 121 AGKIILALRGKLTPAEEEGEAGDESL------------PFKELVEALNGMGFDRKLAEKA 168

Query: 181 VVSVLKK------EKNIADDS-QIIRLALRAIS 206
           + + L +      E +      ++ R A+  +S
Sbjct: 169 LKAALNELEPERFEHDHEKLERELFRAAIVRLS 201


>gi|301168494|emb|CBW28084.1| holliday junction DNA helicase ruvA [Bacteriovorax marinus SJ]
          Length = 216

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 97/221 (43%), Gaps = 23/221 (10%)

Query: 1   MIGKIKGNIE-GLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MIG ++G +      + V++   G+ Y +Y      + +   G   ++F+   +++    
Sbjct: 1   MIGHLQGEVIFSDGVEAVVLTNSGIGYQVYI-----NQVLPEGKSASIFISHVIKEASEE 55

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  +++ F LL SV+GVG + A  ++  +   +++ SI+  + K + + PGI  K
Sbjct: 56  LYGFKTIREKKLFELLTSVKGVGPKSAFSLVGALGVDQIINSILFDDKKSLTKAPGIGNK 115

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS----------------FAINA 163
            A++++ +L+ K   +     +     +     I  + +                   +A
Sbjct: 116 AAAQMILDLQNKISKIKMYSNKSKGIQDVPAIQIPELSTSEQEESVHRESDNQELIIKDA 175

Query: 164 ISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204
           I A   LG+ +++       +L     I+   Q++ L L+ 
Sbjct: 176 IMACKELGFKEEKIIPLAQKILATN-EISKPEQLVHLVLKE 215


>gi|218462458|ref|ZP_03502549.1| Holliday junction DNA helicase RuvA [Rhizobium etli Kim 5]
          Length = 168

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 71/170 (41%), Positives = 113/170 (66%), Gaps = 3/170 (1%)

Query: 37  CLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITAT 96
            LG  G+ C LF+ET++R+DQ++LFGF + L+R+WF LLQSVQGVGA+VA+ VLS +T  
Sbjct: 1   KLGSAGEACVLFIETYVREDQLKLFGFTTALEREWFNLLQSVQGVGAKVALAVLSTLTPG 60

Query: 97  ELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM 156
           EL  +I LQ+   +++ PG+  K+A R++TELK +A + +    + ++   K++      
Sbjct: 61  ELANAIALQDRAAVSRAPGVGPKVAMRLVTELKNRAPAFAG---EAINIALKQELGEGVA 117

Query: 157 PSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
            +   +A+SAL NLGY +DQA  AV + +K     AD +++IRL L+ ++
Sbjct: 118 AAPVADAVSALTNLGYSRDQAANAVAAAMKTAGEGADSAKLIRLGLKELA 167


>gi|124516217|gb|EAY57725.1| probable holliday junction DNA helicase (RuvA) [Leptospirillum
           rubarum]
          Length = 208

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 82/201 (40%), Gaps = 7/201 (3%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGD--FCTLFVETHMRQ--D 56
           MI ++ G      E+ V++    V Y ++    +   L    +     L ++    +  +
Sbjct: 1   MIARLWGVPVEWEEESVILRAGDVGYRVHLSPCSHQKLRSRPEGLVLELLIQHFWNEHLE 60

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
              L GF    ++  F  L+ V G+G   A+ +L+ I   + +  +   ++  +  + G+
Sbjct: 61  APLLAGFPDPDEQTLFNQLRKVPGLGPLSALRLLA-IPVGDFLTIVRDNDAGRLKGLKGV 119

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             K A +I+ EL+G+   ++       +   K      S+     + +  +   G+   +
Sbjct: 120 GEKTARKILGELRGQVDWIAESSTVITASSGKGPDTPASLARSVQDVL--VRQFGHSPLE 177

Query: 177 ATTAVVSVLKKEKNIADDSQI 197
           A   V   L+++ +I+   ++
Sbjct: 178 AQRLVSEALRRQPSISSMEEL 198


>gi|134093539|ref|YP_001098614.1| Holliday junction DNA helicase ruvA [Herminiimonas arsenicoxydans]
          Length = 161

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 16/175 (9%)

Query: 32  IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91
           + T   L  +G+   L     +R+D   LFGF +  +R  F  L  + G+GAR A+ +LS
Sbjct: 1   MSTFYNLPGLGEKVALLTHLTVREDAHILFGFGTAEERNVFKQLVKITGIGARTALSILS 60

Query: 92  RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQA 151
            ++  +L  +I LQ +  + +IPGI  K A R              +  +     +   A
Sbjct: 61  GMSVADLSNAITLQEAGRLTKIPGIGKKTAER------------LLLELKGKLGADLGAA 108

Query: 152 HICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
                     + ++AL+ LGY   +A  A+  V          S  I+LAL+A+S
Sbjct: 109 GGVIHSDATSDILNALLALGYSDKEALLAMKQV----PAGTGVSDGIKLALKALS 159


>gi|319790481|ref|YP_004152114.1| Holliday junction DNA helicase RuvA [Thermovibrio ammonificans
           HB-1]
 gi|317114983|gb|ADU97473.1| Holliday junction DNA helicase RuvA [Thermovibrio ammonificans
           HB-1]
          Length = 190

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 88/207 (42%), Gaps = 27/207 (13%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMR-QDQIR 59
           M+  + G + G  +  V +        +  P R L  L + G   TL+ E     +   +
Sbjct: 1   MVEAVSGTVSGKGDGAVFLSCGCFTLRLLVPERLLPELHE-GTHVTLYTELLFPQEGAPQ 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           LFGF +  +R+ F  L  V  VG+R+A+ VLS  +  E V+ +  ++ + ++++PG+  K
Sbjct: 60  LFGFKTREERELFRQLMKVPKVGSRLALAVLSVFSPEEFVKVLEGEDVEALSKVPGLGRK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           ++ R++TELKGK +S                                L  LGY   +   
Sbjct: 120 LSRRLITELKGKLVS----------------------GEVPREVKEVLRRLGYTTAEINE 157

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           A+  +           + ++ AL+ +S
Sbjct: 158 ALKGL---NLTGVGVEEAVKEALKRLS 181


>gi|88856266|ref|ZP_01130926.1| holliday junction DNA helicase [marine actinobacterium PHSC20C1]
 gi|88814585|gb|EAR24447.1| holliday junction DNA helicase [marine actinobacterium PHSC20C1]
          Length = 205

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 85/205 (41%), Gaps = 15/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIY-CPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           MI  ++G +       ++I+V GV   +   P   LS   ++G    L     +R+D + 
Sbjct: 1   MISSLRGTVLAAVGTSIVIEVGGVGLSVSVIPEHALS--VRVGAETQLNTVLIVREDDLS 58

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  +   F LL+ V GVG + AMGVL+ +T  ++  ++  +N     ++ GI  K
Sbjct: 59  LYGFRTREELDVFALLRGVTGVGPKSAMGVLAALTPDDIARAVAEENDSAFRKVTGIGPK 118

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD--QA 177
            A  I+  L GK    +     D            +    + +   AL  LG+ +   + 
Sbjct: 119 TAKLIVLNLTGKLEVSALKRGPDS----------VAATPISESVSMALQGLGWSEKLARP 168

Query: 178 TTAVVSVLKKEKNIADDSQIIRLAL 202
                     E    +   I+R AL
Sbjct: 169 AAEAAFAEASEAEKENTQAILRRAL 193


>gi|284044634|ref|YP_003394974.1| Holliday junction DNA helicase RuvA [Conexibacter woesei DSM 14684]
 gi|283948855|gb|ADB51599.1| Holliday junction DNA helicase RuvA [Conexibacter woesei DSM 14684]
          Length = 198

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 50/217 (23%), Positives = 84/217 (38%), Gaps = 37/217 (17%)

Query: 1   MIGKIKGNIEGLYED--------------YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCT 46
           MI  ++G + G                            Y +     TL  +   G   T
Sbjct: 1   MIALVRGEVAGRRPAAPAGGDVVVDVNGVG---------YRLAVSSETLKQVPAAGKRVT 51

Query: 47  LFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQN 106
           L     +R D ++L+GF ++ +R  F++L  VQ VG +VA+ VLS  T  EL+ ++   +
Sbjct: 52  LHSHLIVRDDALQLYGFATEEERDLFLMLLGVQSVGPKVALAVLSGGTPRELLGALAAGD 111

Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166
           +     +PGI  + A RI+ EL+ K           ++  +       +       A   
Sbjct: 112 AARFQAVPGIGKRTAERIIVELREK---------AGVAVPDDAVHGSVASDDPRTLAREG 162

Query: 167 LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
           LV LG+  D+A   +              ++I  ALR
Sbjct: 163 LVGLGFSLDEAERLLKRA-----PGETAEELIAHALR 194


>gi|160902900|ref|YP_001568481.1| helix-hairpin-helix DNA-binding motif-containing protein [Petrotoga
           mobilis SJ95]
 gi|254767380|sp|A9BIJ5|RUVA_PETMO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|160360544|gb|ABX32158.1| helix-hairpin-helix motif [Petrotoga mobilis SJ95]
          Length = 190

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 15/205 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI KI   IE   ++ VLI +  +    Y  +  +    K GD    F    + +    L
Sbjct: 1   MIRKINATIEDFEDEKVLIKIGVLTLEAYPSLNVIRYF-KKGDQYEFFASLEISEWNTSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           + F   ++R  F  L+ V  +G R+A  +L +  A E ++ I  Q++ +++ +PGI  K 
Sbjct: 60  YIFKDKIERDVFESLKKVSKIGPRIASKILRKTDAEEFIQMINSQDTALLSSLPGIGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R+++E           +    S  +          +    AI AL  LG+ + +    
Sbjct: 120 AERLISE-----------LSNSFSAYSTGADTQSYGNNNLKEAIEALETLGFQRYEIMKV 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +   +       +II+  L  +
Sbjct: 169 IGQL---DLEDLKTEEIIKECLTRL 190


>gi|57242124|ref|ZP_00370064.1| Holliday junction DNA helicase RuvA [Campylobacter upsaliensis
           RM3195]
 gi|57017316|gb|EAL54097.1| Holliday junction DNA helicase RuvA [Campylobacter upsaliensis
           RM3195]
          Length = 183

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 92/207 (44%), Gaps = 25/207 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           M+  I+G I      + ++    GV Y IY  +   + L ++   C L +   +++D  +
Sbjct: 1   MVVAIEGIITKKEPTFAVLKTQNGVSYGIYISLFCAAKL-ELHTKCELLITQIIKEDSHK 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL   +++ F +L  V G+GA  AM + S + +    +++ L +  V  ++PGI  K
Sbjct: 60  LYGFLEKDEQKIFEMLLKVNGIGATTAMTICSSLDSNAFYKALSLNDESVFKKVPGIGAK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ EL     + ++V       +    +                   G+ QD+  +
Sbjct: 120 SAKRIIVELADAKTAFNNVSDDKAQALAALLSL------------------GFKQDKILS 161

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
            + +         D S++I+ AL+ ++
Sbjct: 162 VLAT-----CEAKDTSELIKEALKKLA 183


>gi|119952829|ref|YP_945038.1| Holliday junction DNA helicase RuvA [Borrelia turicatae 91E135]
 gi|254766946|sp|A1QYH6|RUVA_BORT9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|119861600|gb|AAX17368.1| Holliday junction DNA helicase RuvA [Borrelia turicatae 91E135]
          Length = 196

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 53/211 (25%), Positives = 99/211 (46%), Gaps = 21/211 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI KI G I    E  ++I      + I       + LG + +   +    H+R+D+IRL
Sbjct: 1   MINKICGKIVEKRESSIVIVALPFEFEILVSSFCNAELG-LQEDVEILTYLHLREDEIRL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  +R+ F  L SV G+G + A+ +LS I   E  +++  ++ K+I+ + GI  K+
Sbjct: 60  FGFLNVSEREVFEKLISVDGIGPKAALRILSGIKYNEFRDAVEREDVKLISNVKGIGNKM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I  +L+GK + ++      +                      ++VN+G+ +     A
Sbjct: 120 AGKIFLKLRGKLVKVNEASSGVLK---------------FKELEQSIVNMGFDRKLVAAA 164

Query: 181 VVSVLKKEKNIA----DDSQ-IIRLALRAIS 206
           +  ++  ++ +     D  Q + R  LR +S
Sbjct: 165 IKEIMLIDEFLMLRQVDQEQFLFREILRKLS 195


>gi|72080739|ref|YP_287797.1| Holliday junction DNA helicase RuvA [Mycoplasma hyopneumoniae 7448]
 gi|90135315|sp|Q4A7W5|RUVA_MYCH7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|71913863|gb|AAZ53774.1| holliday junction DNA helicase RuvA [Mycoplasma hyopneumoniae 7448]
          Length = 221

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/216 (23%), Positives = 87/216 (40%), Gaps = 24/216 (11%)

Query: 7   GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD 66
           G I    ++Y++++  G  Y+IY P           +   +++  H        +GF S 
Sbjct: 7   GKIVSKNKNYLILENHGSGYLIYVPRIDRFS---RDENRKIYIYEHENDYTKITYGFASF 63

Query: 67  LDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126
            +R  F  L S+QGVG + A+  L+      L+  I   + K +A+IP +S K A +I+ 
Sbjct: 64  RERILFEDLISIQGVGPKTAISALNS-GMQNLINLIAANDWKTLAKIPYLSEKNAKQIVF 122

Query: 127 ELKGKAISLSSVVQQDMSCVNKEQ-----------AHICSMPSFAINAISA-----LVNL 170
           E + K    +   +      N++            A I    S   +  +A     L  L
Sbjct: 123 EFQKKYERFNENHKNQTEETNQDSQEKELEKNDDLADITIQKSNLEDKTAANLEDTLKML 182

Query: 171 GYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           G+   Q   A+  V   E    +   +I  A++ IS
Sbjct: 183 GFKPRQIDYALTKVEPNE----NFENLIENAIKIIS 214


>gi|71893769|ref|YP_279215.1| Holliday junction DNA helicase RuvA [Mycoplasma hyopneumoniae J]
 gi|90135325|sp|Q4A9R7|RUVA_MYCHJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|71851896|gb|AAZ44504.1| holliday junction DNA helicase RuvA [Mycoplasma hyopneumoniae J]
          Length = 221

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/216 (23%), Positives = 87/216 (40%), Gaps = 24/216 (11%)

Query: 7   GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD 66
           G I    ++Y++++  G  Y+IY P           +   +++  H        +GF S 
Sbjct: 7   GKIVSKNKNYLILENHGSGYLIYVPRIDRFS---RDENRKIYIYEHENDYTKITYGFASF 63

Query: 67  LDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126
            +R  F  L S+QGVG + A+  L+      L+  I   + K +A+IP +S K A +I+ 
Sbjct: 64  RERILFEDLISIQGVGPKTAISALNS-GMQNLINLIAANDWKTLAKIPYLSEKNAKQIVF 122

Query: 127 ELKGKAISLSSVVQQDMSCVNKEQ-----------AHICSMPSFAINAISA-----LVNL 170
           E + K    +   +      N++            A I    S   +  +A     L  L
Sbjct: 123 EFQKKYERFNENHKNQTEETNQDSQEKELEKKDDLADITIQKSNLEDKTAANLEDTLKML 182

Query: 171 GYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           G+   Q   A+  V   E    +   +I  A++ IS
Sbjct: 183 GFKPRQIDYALTKVEPNE----NFENLIENAIKIIS 214


>gi|312601377|gb|ADQ90632.1| Holliday junction ATP-dependent DNA helicase ruvA [Mycoplasma
           hyopneumoniae 168]
          Length = 221

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/216 (23%), Positives = 87/216 (40%), Gaps = 24/216 (11%)

Query: 7   GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD 66
           G I    ++Y++++  G  Y+IY P           +   +++  H        +GF S 
Sbjct: 7   GKIVSKNKNYLILENHGSGYLIYVPRIDRFN---RDENRKIYIYEHENDYTKITYGFASF 63

Query: 67  LDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126
            +R  F  L S+QGVG + A+  L+      L+  I   + K +A+IP +S K A +I+ 
Sbjct: 64  RERILFEDLISIQGVGPKTAISALNS-GMQNLINLIAANDWKTLAKIPYLSEKNAKQIVF 122

Query: 127 ELKGKAISLSSVVQQDMSCVNKEQ-----------AHICSMPSFAINAISA-----LVNL 170
           E + K    +   +      N++            A I    S   +  +A     L  L
Sbjct: 123 EFQKKYERFNENHKNQAEETNQDTQEKELEKKDDLADITIQKSNLEDRTAANLEDTLKML 182

Query: 171 GYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           G+   Q   A+  V   E    +   +I  A++ IS
Sbjct: 183 GFKPRQIDYALTKVEPNE----NFENLIENAIKIIS 214


>gi|161936257|ref|YP_115931.2| Holliday junction DNA helicase RuvA [Mycoplasma hyopneumoniae 232]
          Length = 221

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/216 (23%), Positives = 86/216 (39%), Gaps = 24/216 (11%)

Query: 7   GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD 66
           G I    ++Y++++  G  Y+IY P           +   +++  H        +GF S 
Sbjct: 7   GKIVSKNKNYLILENHGSGYLIYVPRIDRFS---RDENRKIYIYEHENDYTKITYGFASF 63

Query: 67  LDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126
            +R  F  L S+QGVG + A+  L+      L+  I   + K +A+IP +S K A +I+ 
Sbjct: 64  RERILFEDLISIQGVGPKTAISALNS-GMQNLINLIAANDWKTLAKIPYLSEKNAKQIVF 122

Query: 127 ELKGKAISLSSVVQQDMSCVNKEQ-----------AHICSMPSFAINAISA-----LVNL 170
           E + K    +   +      N E            A I    S   +  +A     L  L
Sbjct: 123 EFQKKYERFNENHKNQTEETNPETQEKELEKEDDLADITIQKSNLEDKTAANLEDTLKML 182

Query: 171 GYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           G+   Q   A+  V   E    +   +I  A++ IS
Sbjct: 183 GFKPRQIDYALTKVEPNE----NFENLIENAIKIIS 214


>gi|291320151|ref|YP_003515412.1| Holliday junction DNA helicase RuvA [Mycoplasma agalactiae]
 gi|290752483|emb|CBH40455.1| Holliday junction DNA helicase ruvA [Mycoplasma agalactiae]
          Length = 198

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 85/206 (41%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI    G I   +   ++ + QG+ Y +  P        +I   C L++     + Q   
Sbjct: 1   MILYRIGEIIHKHNSNIIFESQGIGYSLILPDP---ERVEIKQKCKLYLFEIKNEYQYAT 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           + F    +R  F+ L S+ G+G R A  +L+     ++   I   N++ + +IP ++ ++
Sbjct: 58  YAFKDFKERLLFVDLISLNGIGPRAAFNILN-FGFEKVAALIAEGNAEALIEIPYLNPRM 116

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A  I+ EL+ K   + S          K+ A I    +        L  LG+   Q   A
Sbjct: 117 ARLIVAELQAKWSKMIS---------PKDAAKINETTNALSEVKETLKMLGFKTKQIDGA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +   +    D  ++I  A++ +S
Sbjct: 168 LSKISSTD----DVEKMIEEAIKLMS 189


>gi|325001439|ref|ZP_08122551.1| Holliday junction DNA helicase RuvA [Pseudonocardia sp. P1]
          Length = 173

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 86/176 (48%), Gaps = 7/176 (3%)

Query: 30  CPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGV 89
               TL  L + G+   L     +R++ + LFGF    +R+ F+LLQ+V G+G R+A+  
Sbjct: 1   ATPSTLGGL-RRGEETRLATTLVVREESLTLFGFADTEERELFLLLQTVSGIGPRLALAT 59

Query: 90  LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKE 149
           ++ +    L  ++   +  V+ +IPG+  K A R++ EL+ K  + ++      S     
Sbjct: 60  IAVLEPDTLRRALADGDLAVLTRIPGVGRKSAERLVVELRDKVTAPAAAPAGATS----- 114

Query: 150 QAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
            A    +       + AL+ LG+ Q  A  AV  VL ++ +    S ++R AL ++
Sbjct: 115 AAAPSPVLGVREQVVEALLGLGFPQRPAEQAVDGVLAEQPD-TSASGLLRTALSSL 169


>gi|315638160|ref|ZP_07893342.1| crossover junction ATP-dependent DNA helicase RuvA [Campylobacter
           upsaliensis JV21]
 gi|315481696|gb|EFU72318.1| crossover junction ATP-dependent DNA helicase RuvA [Campylobacter
           upsaliensis JV21]
          Length = 183

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 93/207 (44%), Gaps = 25/207 (12%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           M+  I+G I      + ++    GV Y IY  +   + L ++   C L +   +++D  +
Sbjct: 1   MVVAIEGIITKKEPTFAVLKTQNGVSYGIYISLFCAAKL-ELHTKCELLITQIIKEDSHK 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GFL   +++ F +L  V G+GA  AM + S + +    +++ L +  V  ++PGI  K
Sbjct: 60  LYGFLEKDEQKIFEMLLKVNGIGATTAMAICSSLDSNAFYKALSLNDESVFKKVPGIGAK 119

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A RI+ EL    ++ ++V       +    +                   G+ QD+  +
Sbjct: 120 SAKRIIVELSDSKMAFNNVSDDKAQALAALLSL------------------GFKQDKILS 161

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
            + +         D S++I+ AL+ ++
Sbjct: 162 ILAT-----CEAKDTSELIKEALKKLA 183


>gi|311894864|dbj|BAJ27272.1| putative Holliday junction ATP-dependent DNA helicase RuvA
           [Kitasatospora setae KM-6054]
          Length = 203

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 9/169 (5%)

Query: 29  YCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMG 88
            C   TL+ L ++G+   L     +R+D + LFGF+ D +R  F +LQ+  GVG ++A  
Sbjct: 29  QCTPATLATL-RVGETARLATSLVVREDSLTLFGFVDDDERATFEVLQAAPGVGPKLAQA 87

Query: 89  VLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNK 148
           +L   +   L  +I   + K +  +PGI    A++++ E K K  +    V         
Sbjct: 88  ILGTHSPEALRVAIAGGDEKALIAVPGIGKAKAAKLLLEYKDKLGAPHGSVPA------- 140

Query: 149 EQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQI 197
           ++        +     +ALV LGY   +A  AV  V   E        +
Sbjct: 141 QKPVAAGPAPWHEQLHAALVGLGYAPREAEEAVARV-TPEAEAQSVPDV 188


>gi|312969902|ref|ZP_07784085.1| ruvA N terminal domain protein [Escherichia coli 1827-70]
 gi|310338187|gb|EFQ03276.1| ruvA N terminal domain protein [Escherichia coli 1827-70]
          Length = 107

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/102 (29%), Positives = 54/102 (52%)

Query: 18  LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQS 77
           LI+V GV Y ++ P+     L + G    +F    +R+D   L+GF +  +R  F  L  
Sbjct: 2   LIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIK 61

Query: 78  VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
             GVG ++A+ +LS ++A + V ++  +    + ++PGI  K
Sbjct: 62  TNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKK 103


>gi|291545898|emb|CBL19006.1| Holliday junction resolvasome, DNA-binding subunit [Ruminococcus
           sp. SR1/5]
          Length = 134

 Score = 99.0 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/133 (31%), Positives = 63/133 (47%), Gaps = 1/133 (0%)

Query: 71  WFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
            F LL  V GVG + A+G+LS I+A EL  +++  + K I++ PGI  K A +++ ELK 
Sbjct: 1   MFKLLIGVNGVGPKGALGILSGISADELRFAVLSDDVKTISKAPGIGKKTAQKMILELKD 60

Query: 131 KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKN 190
           K     +   +      +       +      A+ ALV LGY    A  AV  V +    
Sbjct: 61  KLKLEDAFEMKLAHQQEEAAEGASDLRDSRQEAVEALVALGYSSADALRAVRKVPEDVPA 120

Query: 191 IADDSQIIRLALR 203
             D   I+R AL+
Sbjct: 121 D-DVEAILRAALK 132


>gi|167770542|ref|ZP_02442595.1| hypothetical protein ANACOL_01888 [Anaerotruncus colihominis DSM
           17241]
 gi|167667137|gb|EDS11267.1| hypothetical protein ANACOL_01888 [Anaerotruncus colihominis DSM
           17241]
          Length = 172

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/178 (27%), Positives = 83/178 (46%), Gaps = 9/178 (5%)

Query: 29  YCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMG 88
              + TLSCL  +G   TL+   ++R+D + L+GF +  +   F +L  V GVG + A+ 
Sbjct: 1   MTTLTTLSCLPPVGGEATLYTHLNVREDALDLYGFYTQAELNAFKMLIGVSGVGPKSALA 60

Query: 89  VLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNK 148
           +LS +T  +L   I   +SK +   PGI  K A RI+ E K +         +    +++
Sbjct: 61  ILSDMTPDKLALCIAAGDSKSLRAAPGIGPKAAQRIILECKDRIG-----ASELSGEMSE 115

Query: 149 EQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
             + +    +    A SAL  LGY   +A  A+  +            +I+  L+A+S
Sbjct: 116 VASQLRHETTNMSEAASALAALGYSPTEAAQALAGLAADMP----VEDMIKHGLKALS 169


>gi|313678674|ref|YP_004056414.1| Holliday junction DNA helicase [Mycoplasma bovis PG45]
 gi|312950114|gb|ADR24709.1| Holliday junction DNA helicase [Mycoplasma bovis PG45]
          Length = 198

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 83/206 (40%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI    G I   +   ++ + QG+ Y +  P         +   C L++     + Q   
Sbjct: 1   MILYRIGEIIHKHNSNIIFESQGIGYSLILPDP---ERVDVKQKCKLYLFEIKNEYQYAT 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           + F    +R  F+ L S+ G+G + A  +L+     ++   I   N + + +IP ++ ++
Sbjct: 58  YAFKDFKERLLFVDLISLNGIGPKAAFNILN-FGFEKVSALIAEGNVEALIKIPYLNPRM 116

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A  I+ EL+ K   + S  +          A I    +    A   L  LG+   Q   A
Sbjct: 117 ARLIVAELQAKWSKMISPKEV---------AKISVSTNTISEAKETLKMLGFKTKQIDNA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  V   +    D  ++I  A++ IS
Sbjct: 168 LAKVSTTD----DIEKMIEEAIKLIS 189


>gi|158316901|ref|YP_001509409.1| DNA recombination protein RuvA [Frankia sp. EAN1pec]
 gi|158112306|gb|ABW14503.1| DNA recombination protein RuvA domain I [Frankia sp. EAN1pec]
          Length = 239

 Score = 98.6 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 89/184 (48%), Gaps = 1/184 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E L     ++DV GV  +++C   TL+ L ++G+   L     +R+ ++ L
Sbjct: 1   MIASVSGTVEVLSPGSAVVDVGGVGVLVWCTPSTLARL-RVGERARLATTLVVRETELTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  F +LQ   GVG R+A  VL   +   +  ++  ++   + ++PGI  K 
Sbjct: 60  YGFRDADERDVFEILQGAAGVGPRLAQAVLGVHSPDVIRRAVAEEDLATLTKVPGIGRKS 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI+ +L+ +    SS V    +      A    + +       ALV LGY   +A  A
Sbjct: 120 AQRIVLDLRDRLGPPSSPVPPQRAAAPPPAAADPRLGAAGEQVRDALVGLGYSAKEALDA 179

Query: 181 VVSV 184
           VV+ 
Sbjct: 180 VVAA 183


>gi|224534918|ref|ZP_03675487.1| holliday junction DNA helicase RuvA [Borrelia spielmanii A14S]
 gi|224513858|gb|EEF84183.1| holliday junction DNA helicase RuvA [Borrelia spielmanii A14S]
          Length = 196

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 49/211 (23%), Positives = 96/211 (45%), Gaps = 21/211 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI KI G +    E  +++      + I      L    K+ D   LF   + R+++++L
Sbjct: 1   MINKIYGKVIEKKESSLVLMTAVFEFEILVSAFCLDNF-KLSDKVELFTYLYTRENELKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  +R+ F  L  V G+G R A+ VLS I   E  ++I  ++ +++A+I GI  K+
Sbjct: 60  FGFLNSDERETFKRLIGVSGIGPRAALRVLSSIRYNEFKDAIDREDIELVAKIKGIGKKM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A ++   L+GK +                   + S          ++V++G+ +   ++ 
Sbjct: 120 AGKMFLHLQGKLL---------------INNELESSLFGFKELEESIVSMGFDRRIVSSK 164

Query: 181 VVSV--LKKEKNIADDSQ---IIRLALRAIS 206
           +     L +  N+ D  +   + +  L+ +S
Sbjct: 165 LKEAFNLVEFSNLKDSEKEQFLFKEVLKRMS 195


>gi|225552109|ref|ZP_03773049.1| holliday junction DNA helicase RuvA [Borrelia sp. SV1]
 gi|225371107|gb|EEH00537.1| holliday junction DNA helicase RuvA [Borrelia sp. SV1]
          Length = 197

 Score = 97.9 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 49/211 (23%), Positives = 96/211 (45%), Gaps = 20/211 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI KI G +    E  +++      + +      L+    + D   LF   + R+++++L
Sbjct: 1   MINKIHGKVIEKKESSLVLMTTVFDFELLVSAFCLANF-NLSDKVELFTYLYTRENELKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  +R+ F  L  V GVG R A+ VLS I   E  E+I  ++ +++++I GI  K+
Sbjct: 60  FGFLNSDEREIFKELIGVSGVGPRAALRVLSNIRYNEFKEAIDREDIELVSKIKGIGKKM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A ++   L+GK +  S +    +                      ++V++G+ +    + 
Sbjct: 120 AGKMFLHLQGKLLINSELESTGLF--------------RFKELEESIVSMGFDRKIVNSK 165

Query: 181 VVSV--LKKEKNIADDSQ---IIRLALRAIS 206
           +     L +  N+ D  +   + +  L+ IS
Sbjct: 166 IREAFNLAEFANLKDSEKEQFLFKEVLKRIS 196


>gi|227877607|ref|ZP_03995661.1| helicase Holliday junction [Lactobacillus crispatus JV-V01]
 gi|256844550|ref|ZP_05550036.1| Holliday junction DNA helicase RuvA [Lactobacillus crispatus
           125-2-CHN]
 gi|256849061|ref|ZP_05554494.1| helicase Holliday junction [Lactobacillus crispatus MV-1A-US]
 gi|262047543|ref|ZP_06020498.1| Holliday junction DNA helicase RuvA [Lactobacillus crispatus
           MV-3A-US]
 gi|293381579|ref|ZP_06627566.1| Holliday junction DNA helicase RuvA [Lactobacillus crispatus 214-1]
 gi|312977890|ref|ZP_07789636.1| holliday junction DNA helicase RuvA [Lactobacillus crispatus
           CTV-05]
 gi|227862801|gb|EEJ70266.1| helicase Holliday junction [Lactobacillus crispatus JV-V01]
 gi|256613628|gb|EEU18831.1| Holliday junction DNA helicase RuvA [Lactobacillus crispatus
           125-2-CHN]
 gi|256713837|gb|EEU28825.1| helicase Holliday junction [Lactobacillus crispatus MV-1A-US]
 gi|260572119|gb|EEX28684.1| Holliday junction DNA helicase RuvA [Lactobacillus crispatus
           MV-3A-US]
 gi|290921849|gb|EFD98864.1| Holliday junction DNA helicase RuvA [Lactobacillus crispatus 214-1]
 gi|310895197|gb|EFQ44265.1| holliday junction DNA helicase RuvA [Lactobacillus crispatus
           CTV-05]
          Length = 195

 Score = 97.9 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 57/193 (29%), Positives = 91/193 (47%), Gaps = 11/193 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G I  +   YV++DV GV Y +Y P          G    +F+E  +R   I L
Sbjct: 1   MYEYFEGVITVVTPSYVVVDVGGVGYKVYSPTPFAYTQ---GQKAKVFIEQVVRDTGITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  D+  F+ L SV G+G + AM +++   +  L E+I     K + + PG+  K 
Sbjct: 58  YGFQSQDDKGLFLKLLSVSGIGPKSAMAIMAAEDSNSLAEAIEQGEVKYLTRFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK     + + +  +  N        +P    +A+ AL+ LGY Q +    
Sbjct: 118 ASQIVLDLKGKLGDYVARLDRPDNGEN--------VPPALNDALLALIALGYTQKEVDRI 169

Query: 181 VVSVLKKEKNIAD 193
              + K   N AD
Sbjct: 170 TPKLEKVAANTAD 182


>gi|332295726|ref|YP_004437649.1| Holliday junction ATP-dependent DNA helicase ruvA
           [Thermodesulfobium narugense DSM 14796]
 gi|332178829|gb|AEE14518.1| Holliday junction ATP-dependent DNA helicase ruvA
           [Thermodesulfobium narugense DSM 14796]
          Length = 194

 Score = 97.9 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 61/209 (29%), Positives = 95/209 (45%), Gaps = 20/209 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSC-LGKIGDFCTLFVETHMRQDQIR 59
           MI  I GN+ G  E+ ++++  G+ Y+I  P   L     K GD   L++      +  +
Sbjct: 1   MIAYIVGNLIGFIENSIIVENNGLGYLIKLPPYLLEKNKNKKGDIIELYISHQFIGESQQ 60

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISM 118
           LFGF S  D + F  L  + GVG ++A+ ++S   T   L+  +   +   +  IPG+  
Sbjct: 61  LFGFESISDLESFQKLLKIHGVGVKLALQIISSFKTNPTLILDLKNDHISSLKSIPGVGE 120

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K A RI  ELKG     S V   D + +                A+ ALV+LG    +A 
Sbjct: 121 KTAKRIFEELKGCFPEFSEVKFDDRAKL----------------AVDALVSLGVSFQKAK 164

Query: 179 TAVVSVLKK--EKNIADDSQIIRLALRAI 205
             V+  LK   + NI     II +A++ I
Sbjct: 165 EVVIDTLKDVQDLNIIKSEDIITMAIQRI 193


>gi|216264161|ref|ZP_03436153.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 156a]
 gi|221217494|ref|ZP_03588965.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 72a]
 gi|224532548|ref|ZP_03673171.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi WI91-23]
 gi|224533942|ref|ZP_03674527.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi CA-11.2a]
 gi|225549276|ref|ZP_03770249.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 94a]
 gi|225549747|ref|ZP_03770712.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 118a]
 gi|226321147|ref|ZP_03796688.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 29805]
 gi|215980634|gb|EEC21441.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 156a]
 gi|221192772|gb|EEE18988.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 72a]
 gi|224512491|gb|EEF82869.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi WI91-23]
 gi|224512945|gb|EEF83311.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi CA-11.2a]
 gi|225369707|gb|EEG99155.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 118a]
 gi|225370134|gb|EEG99574.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 94a]
 gi|226233439|gb|EEH32179.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 29805]
 gi|312148088|gb|ADQ30747.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi JD1]
 gi|312149630|gb|ADQ29701.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi N40]
          Length = 197

 Score = 97.9 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 49/211 (23%), Positives = 96/211 (45%), Gaps = 20/211 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI KI G +    E  +++      + +      L+    + D   LF   + R+++++L
Sbjct: 1   MINKIHGKVIEKKESSLVLMTTVFEFELLVSAFCLANF-NLSDKVELFTYLYTRENELKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  +R+ F  L  V GVG R A+ VLS I   E  E+I  ++ +++++I GI  K+
Sbjct: 60  FGFLNSDEREIFKELIGVSGVGPRAALRVLSNIRYNEFKEAIDREDIELVSKIKGIGKKM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A ++   L+GK +  S +    +                      ++V++G+ +    + 
Sbjct: 120 AGKMFLHLQGKLLINSELESTGLF--------------RFKELEESIVSMGFDRKIVNSK 165

Query: 181 VVSV--LKKEKNIADDSQ---IIRLALRAIS 206
           +     L +  N+ D  +   + +  L+ IS
Sbjct: 166 IREAFNLAEFANLKDSEKEQFLFKEVLKRIS 196


>gi|296504911|ref|YP_003666611.1| Holliday junction DNA helicase motor [Bacillus thuringiensis
           BMB171]
 gi|296325963|gb|ADH08891.1| Holliday junction DNA helicase motor [Bacillus thuringiensis
           BMB171]
          Length = 150

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 70/148 (47%), Gaps = 3/148 (2%)

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
           + L+GF +  +R  F  L  V G+G + A+ +L+     ++V++I  ++ K + + PG+ 
Sbjct: 1   MALYGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVG 60

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            K A +++ +LKGK   +      D+    +         +    A+ AL  LGY + + 
Sbjct: 61  KKTARQMILDLKGKLADVVPDAFVDLFSDTERFDEKKGSSAELDEALEALRALGYAEREV 120

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205
           +  V  +LK+        Q I+ AL  +
Sbjct: 121 SRVVPELLKE---SLTTDQYIKKALSLL 145


>gi|145652289|gb|ABP88205.1| hypothetical protein [Borrelia lonestari]
          Length = 195

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 53/211 (25%), Positives = 103/211 (48%), Gaps = 22/211 (10%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI KI G I    E  V+I V    + ++     +  L ++ +   +    ++R+++I+L
Sbjct: 1   MINKIYGKIVEKRESSVVIVVLPFEFEVFVSSFCIEKL-ELLENIEILTYIYLRENEIKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+ L+R+ F  L +V G+G R A+ +LS I  +E   +I  ++ ++I++I GI  KI
Sbjct: 60  FGFLNLLEREVFENLITVDGIGPRAALRILSGIKYSEFRNAIEREDIRLISKIKGIGNKI 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I  +LKGK I                 +    +     +   ++VN+G+ +    + 
Sbjct: 120 AGKIFLKLKGKFIK----------------SDKLDLDIKFKDLEQSIVNMGFDRKLVISK 163

Query: 181 VVSVLKKEK--NIADDSQ---IIRLALRAIS 206
           +  +L  ++   + +  Q   + R  L+ +S
Sbjct: 164 IKEILVTDEFLMLGEVEQEQFLFRETLKRLS 194


>gi|295692269|ref|YP_003600879.1| holliday junction ATP-dependent DNA helicase ruva [Lactobacillus
           crispatus ST1]
 gi|295030375|emb|CBL49854.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus
           crispatus ST1]
          Length = 195

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 56/193 (29%), Positives = 91/193 (47%), Gaps = 11/193 (5%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M    +G I  +   YV++DV GV Y +Y P          G    +F+E  +R   I L
Sbjct: 1   MYEYFEGVITVVTPSYVVVDVGGVGYKVYSPTPFAYTQ---GQKAKVFIEQVVRDTGITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF S  D+  F+ L SV G+G + AM +++   +  L E+I     K + + PG+  K 
Sbjct: 58  YGFQSQDDKGLFLKLLSVSGIGPKSAMAIMAAEDSNSLAEAIEQGEVKYLTRFPGVGKKT 117

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           AS+I+ +LKGK     + + +  +  +        +P    +A+ AL+ LGY Q +    
Sbjct: 118 ASQIVLDLKGKLGDYVARLDRPDNGED--------VPPALNDALLALIALGYTQKEVDRI 169

Query: 181 VVSVLKKEKNIAD 193
              + K   N AD
Sbjct: 170 TPKLEKVAANTAD 182


>gi|325971233|ref|YP_004247424.1| Holliday junction ATP-dependent DNA helicase ruvA [Spirochaeta sp.
           Buddy]
 gi|324026471|gb|ADY13230.1| Holliday junction ATP-dependent DNA helicase ruvA [Spirochaeta sp.
           Buddy]
          Length = 210

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/216 (23%), Positives = 101/216 (46%), Gaps = 18/216 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG----KIGDFCTLFVETHMRQD 56
           MI  I G++  + +  V++    V Y++    +T S L     +      L      R+D
Sbjct: 1   MINAIIGDVVRVMDGEVILRAGYVEYMLSVSAQTASKLSNLSLEERRAVRLLTVLIHRED 60

Query: 57  QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116
            + LFGF  + +R+ F+ LQ+V G+G++ A+ +LS I+   L +++   N K+++ IPGI
Sbjct: 61  SMSLFGFYDEAEREAFLQLQTVSGIGSKQALKILSGISVRNLAQALDTGNLKLLSSIPGI 120

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             K   +++  L+   +      +              S  S   + I+ALV++GY + +
Sbjct: 121 GPKTGQKMILALRDVLVFEDEKSK-------TNGQRSQSKASQWSDIITALVDMGYDRRK 173

Query: 177 ATTAVVSVLKKEKNIA------DDSQII-RLALRAI 205
               + S+ ++E          D  Q++ R A++ +
Sbjct: 174 VEEVIDSLSEQESEAIGKLSHHDAEQLLFRSAVKLL 209


>gi|15594369|ref|NP_212157.1| Holliday junction DNA helicase RuvA [Borrelia burgdorferi B31]
 gi|195941763|ref|ZP_03087145.1| Holliday junction DNA helicase (ruvA) [Borrelia burgdorferi 80a]
 gi|218249661|ref|YP_002374557.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi ZS7]
 gi|226322062|ref|ZP_03797587.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi Bol26]
 gi|3914937|sp|P70827|RUVA_BORBU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226725436|sp|B7J0W2|RUVA_BORBZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|2687899|gb|AAC66409.1| Holliday junction DNA helicase (ruvA) [Borrelia burgdorferi B31]
 gi|218164849|gb|ACK74910.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi ZS7]
 gi|226232652|gb|EEH31406.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi Bol26]
          Length = 197

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/211 (23%), Positives = 96/211 (45%), Gaps = 20/211 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI KI G +    E  +++      + +      L+    + D   LF   + R+++++L
Sbjct: 1   MINKIHGKVIEKKESSLVLMTTVFEFELLVSAFCLANF-NLSDKVELFTYLYTRENELKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  +R+ F  L  V GVG R A+ VLS I   E  E+I  ++ +++++I GI  K+
Sbjct: 60  FGFLNSDEREIFKELIGVSGVGPRAALRVLSNIRYNEFKEAIDKEDIELVSKIKGIGKKM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A ++   L+GK +  S +    +                      ++V++G+ +    + 
Sbjct: 120 AGKMFLHLQGKLLINSELESTGLF--------------RFKELEESIVSMGFDRKIVNSK 165

Query: 181 VVSV--LKKEKNIADDSQ---IIRLALRAIS 206
           +     L +  N+ D  +   + +  L+ IS
Sbjct: 166 IREAFNLAEFANLKDSEKEQFLFKEVLKRIS 196


>gi|223889207|ref|ZP_03623796.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 64b]
 gi|223885456|gb|EEF56557.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 64b]
          Length = 197

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/211 (22%), Positives = 96/211 (45%), Gaps = 20/211 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI KI G +    E  +++      + +      L+    + D   LF   + R+++++L
Sbjct: 1   MINKIHGKVIEKKESSLVLMTTVFEFELLVSAFCLANF-NLSDKVELFTYLYTRENELKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  +R+ F  L  V GVG + A+ VLS I   E  E+I  ++ +++++I GI  K+
Sbjct: 60  FGFLNSDEREIFKELIGVSGVGPKAALRVLSNIRYNEFKEAIDKEDIELVSKIKGIGKKM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A ++   L+GK +  S +    +                      ++V++G+ +    + 
Sbjct: 120 AGKMFLHLQGKLLINSELESTGLF--------------RFKELEESIVSMGFDRKIVNSK 165

Query: 181 VVSV--LKKEKNIADDSQ---IIRLALRAIS 206
           +     L +  N+ D  +   + +  L+ IS
Sbjct: 166 IREAFNLAEFANLKDSEKEQFLFKEVLKRIS 196


>gi|314923584|gb|EFS87415.1| putative Holliday junction DNA helicase RuvA [Propionibacterium
           acnes HL001PA1]
 gi|314966629|gb|EFT10728.1| putative Holliday junction DNA helicase RuvA [Propionibacterium
           acnes HL082PA2]
 gi|314981358|gb|EFT25452.1| putative Holliday junction DNA helicase RuvA [Propionibacterium
           acnes HL110PA3]
 gi|315092024|gb|EFT64000.1| putative Holliday junction DNA helicase RuvA [Propionibacterium
           acnes HL110PA4]
 gi|315092849|gb|EFT64825.1| putative Holliday junction DNA helicase RuvA [Propionibacterium
           acnes HL060PA1]
 gi|315103631|gb|EFT75607.1| putative Holliday junction DNA helicase RuvA [Propionibacterium
           acnes HL050PA2]
 gi|315105680|gb|EFT77656.1| putative Holliday junction DNA helicase RuvA [Propionibacterium
           acnes HL030PA1]
 gi|327327453|gb|EGE69229.1| holliday junction DNA helicase RuvA [Propionibacterium acnes
           HL103PA1]
          Length = 158

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/163 (25%), Positives = 78/163 (47%), Gaps = 9/163 (5%)

Query: 46  TLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQ 105
           +L     +R++ + L+GF+   DR  F L+Q+  GVG ++A  ++S + A +L  +I  +
Sbjct: 2   SLHTSLVVREESLTLYGFVEADDRDAFELVQTASGVGPKLAAAIMSVLDAAQLATAITEE 61

Query: 106 NSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS 165
           +   + ++PGI  K A++++ ELK K  +L+          +           +      
Sbjct: 62  DDATLCRVPGIGRKGAAKMILELKDKVAALAPRGASASGATH-------VAAPWREQVAE 114

Query: 166 ALVNLGYGQDQATTAVVSV--LKKEKNIADDSQIIRLALRAIS 206
            LV LG+    A  AV  V  LK+         ++R ALR+++
Sbjct: 115 GLVGLGWSTKDAEKAVDKVVALKEADPAMSIGNLMRAALRSLA 157


>gi|148377489|ref|YP_001256365.1| Holliday junction DNA helicase motor protein [Mycoplasma agalactiae
           PG2]
 gi|229560106|sp|A5IY12|RUVA_MYCAP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|148291535|emb|CAL58921.1| Holliday junction DNA helicase ruvA [Mycoplasma agalactiae PG2]
          Length = 198

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 86/206 (41%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI    G I   +   ++ + QG+ Y +  P        +I   C L++     + Q   
Sbjct: 1   MILYRIGEIIHKHNSNIIFESQGIGYSLILPDP---ERVEIKQKCKLYLFEIKNEYQYAT 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           + F    +R  F+ L S+ G+G R A  +L+     ++V  I   N++ + +IP ++ ++
Sbjct: 58  YAFKDFKERLLFVDLISLNGIGPRAAFNILN-FGFEKVVALIAEGNAEALIEIPYLNPRM 116

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A  I+ EL+ K   + S          K+ A I    +        L  +G+   Q   A
Sbjct: 117 ARLIVAELQAKWSKMIS---------PKDAAKINETTNTLSEVKETLKMVGFKTKQIDGA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  +   +    D  ++I  A++ +S
Sbjct: 168 LSKISSTD----DVEKMIEEAIKLMS 189


>gi|219685405|ref|ZP_03540224.1| holliday junction DNA helicase RuvA [Borrelia garinii Far04]
 gi|219673178|gb|EED30198.1| holliday junction DNA helicase RuvA [Borrelia garinii Far04]
          Length = 196

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/211 (21%), Positives = 95/211 (45%), Gaps = 21/211 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI KI G +    E  +++      + +      L+   K+ D   LF   +  +++++L
Sbjct: 1   MINKIHGKVIEKKESSLVLMTTVFEFELLVSAFCLANF-KLSDKVELFTYLYAGENELKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  +R+ F  L  V G+G R A+ VLS I   E  ++I  ++ +++++I GI  K+
Sbjct: 60  FGFLNSDERETFKSLIGVSGIGPRAALRVLSNIRYNEFKDAIDREDVELVSKIKGIGKKM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A ++   L+GK +                   + S          ++V++G+ +    + 
Sbjct: 120 AGKMFLHLQGKLL---------------INNDLESSLFGFKELEESIVSMGFDRKIVNSK 164

Query: 181 VVSV--LKKEKNIADDSQ---IIRLALRAIS 206
           +     L +  N+ D  +   + +  L+ +S
Sbjct: 165 LKEACDLIEFSNLKDSEKEQFLFKEVLKRMS 195


>gi|304373060|ref|YP_003856269.1| Holliday junction ATP-dependent DNA helicase r [Mycoplasma
           hyorhinis HUB-1]
 gi|304309251|gb|ADM21731.1| Holliday junction ATP-dependent DNA helicase r [Mycoplasma
           hyorhinis HUB-1]
          Length = 213

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 83/202 (41%), Gaps = 12/202 (5%)

Query: 7   GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD 66
           G I    ++Y++++   V ++IY P        +  +   +++  +  +     +GF + 
Sbjct: 7   GKIVSKSKNYLILEQNYVGHLIYVPNIDRF---EKDESKKIYIYKYENEYSKTTYGFENF 63

Query: 67  LDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126
            +R  F  L SVQG+G + A+ +L++      +  I   + K I++ P +++K A +I+ 
Sbjct: 64  RERILFEDLISVQGIGPKTAIAILNQ-GWETAMSYIADGDWKRISEFPYLNVKNAKQIVF 122

Query: 127 ELKGKAISLSSVVQQDMS--------CVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           E + K I +    Q+ ++              +        A      L  LG+ + Q  
Sbjct: 123 EFQNKYIKIFQNYQKTLNKDKVINVEEEVTFSSKTVLEDKIAKELEDTLKILGFQKKQIN 182

Query: 179 TAVVSVLKKEKNIADDSQIIRL 200
            A+  V           + I+L
Sbjct: 183 YALSKVQANNDFELLVEEAIKL 204


>gi|111114845|ref|YP_709463.1| Holliday junction DNA helicase RuvA [Borrelia afzelii PKo]
 gi|216264081|ref|ZP_03436075.1| holliday junction DNA helicase RuvA [Borrelia afzelii ACA-1]
 gi|123047085|sp|Q0SPE1|RUVA_BORAP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|110890119|gb|ABH01287.1| Holliday junction DNA helicase [Borrelia afzelii PKo]
 gi|215980125|gb|EEC20947.1| holliday junction DNA helicase RuvA [Borrelia afzelii ACA-1]
          Length = 196

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/211 (22%), Positives = 96/211 (45%), Gaps = 21/211 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI KI G +    E  +++      + +      L+   K+ D   LF   + ++++++L
Sbjct: 1   MINKIYGKVIEKKESSLVLMTAVFEFELLVSAFCLANF-KLLDKVELFTYLYTKENELKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  +R+ F  L  V G+G R A+ VLS I   E  ++I  ++ ++IA+I GI  K+
Sbjct: 60  FGFLNSDERETFKSLIGVSGIGPRAALRVLSNIRYNEFKDAIDREDIELIAKIKGIGKKM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A ++   L+GK +                   + S          ++V++G+ +    + 
Sbjct: 120 AGKMFLHLQGKLL---------------INNELESSLFRFKELEESIVSMGFDRKIVNSK 164

Query: 181 VVSV--LKKEKNIADDSQ---IIRLALRAIS 206
           +     L +  N+ D  +   + +  L+ +S
Sbjct: 165 LKEAFNLVEFSNLKDSEKEQFLFKEVLKRMS 195


>gi|219684886|ref|ZP_03539828.1| holliday junction DNA helicase RuvA [Borrelia garinii PBr]
 gi|219671831|gb|EED28886.1| holliday junction DNA helicase RuvA [Borrelia garinii PBr]
          Length = 196

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/211 (22%), Positives = 96/211 (45%), Gaps = 21/211 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI KI G +    E  +++      + +      L+   K+ D   LF   + R+++++L
Sbjct: 1   MINKIHGKVIEKKESSLVLMTTVFEFELLVSAFCLANF-KLSDKVELFTYLYARENELKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  +R+ F  L  V G+G R A+ VLS I   E  ++I  ++ +++++I GI  K+
Sbjct: 60  FGFLNSDEREIFKSLIGVSGIGPRAALRVLSNIRYNEFKDAIDREDVELVSKIKGIGKKM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A ++   L+GK +                   + S          ++V++G+ +    + 
Sbjct: 120 AGKMFLHLQGKLL---------------INNELESSLFGFKELEESIVSMGFDRKIVNSK 164

Query: 181 VVSV--LKKEKNIADDSQ---IIRLALRAIS 206
           +     L +  N+ D  +   + +  L+ +S
Sbjct: 165 LKEACDLIEFSNLKDSEKEQFLFKEVLKRMS 195


>gi|317177676|dbj|BAJ55465.1| Holliday junction DNA helicase motor protein [Helicobacter pylori
           F16]
          Length = 183

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 89/205 (43%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +    V I+VQGV Y +   +RT S L + G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMRT-SALLQAGQKVRLKILQVIKEDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETSPARNEVFLALESLGFKSAE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INKVLKTLKPHLSTEAAIKEALQQL 181


>gi|291296179|ref|YP_003507577.1| Holliday junction DNA helicase RuvA [Meiothermus ruber DSM 1279]
 gi|290471138|gb|ADD28557.1| Holliday junction DNA helicase RuvA [Meiothermus ruber DSM 1279]
          Length = 193

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 95/205 (46%), Gaps = 13/205 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+  +KG +       V++ V GV     CP  TL+ L + G    L  +  +R+D + L
Sbjct: 1   MVRYLKGTVLKKSPSSVVLLVGGVGLEASCPASTLAQLSE-GQEAALHTKLVVREDDLSL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF  +   + F LL SV GVG +VA+ +LS  T   L  ++   + +++    G+  K+
Sbjct: 60  FGFADERSLELFELLLSVSGVGPKVALNLLSSQTPALLARALAEGDLRLLTAAQGVGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A RI  EL+GK                  +       S    A  AL+ LG+ + Q  + 
Sbjct: 120 AERIALELRGKVP-----------AHLMGEGGRLVHSSQTEEAELALITLGFREGQVRSI 168

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V  + +K    A   ++I+LAL+A+
Sbjct: 169 VAEIAQKNP-GAGTQELIKLALKAL 192


>gi|282852794|ref|ZP_06262136.1| holliday junction DNA helicase RuvA, N-terminal domain protein
           [Lactobacillus gasseri 224-1]
 gi|282556536|gb|EFB62156.1| holliday junction DNA helicase RuvA, N-terminal domain protein
           [Lactobacillus gasseri 224-1]
          Length = 122

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +  +   YV++DV G+ Y I CP              T++VE  +R   I L
Sbjct: 1   MFEYLKGIVAKIDPAYVVLDVNGIGYKILCPTPYSYQ---ENQPATIYVEQVVRDTGITL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           +GFLS  D++ F+ L SV G+G + A+ +++      L  +I     K + + PG+  +
Sbjct: 58  YGFLSLEDKELFLKLLSVSGIGPKSAVAIMAAEDTDSLASAIQNGEVKYLTRFPGVGKR 116


>gi|330723322|gb|AEC45692.1| Holliday junction DNA helicase RuvA [Mycoplasma hyorhinis MCLD]
          Length = 213

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 83/202 (41%), Gaps = 12/202 (5%)

Query: 7   GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD 66
           G I    ++Y++++   V ++IY P        +  +   +++  +  +     +GF + 
Sbjct: 7   GKIVSKSKNYLILEQNYVGHLIYVPNIDRF---EKDESKKIYIYKYENEYSKTTYGFENF 63

Query: 67  LDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126
            +R  F  L SVQG+G + A+ +L++      +  I   + K I++ P +++K A +I+ 
Sbjct: 64  RERILFEDLISVQGIGPKTAIAILNQ-GWETAMSYIADGDWKKISEFPYLNVKNAKQIVF 122

Query: 127 ELKGKAISLSSVVQQDMS--------CVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           E + K I +    Q+ ++              +        A      L  LG+ + Q  
Sbjct: 123 EFQNKYIKIFQNYQKTLNKDKVINVEEEVTFSSKTVLEDKIAKELEDTLKILGFQKKQIN 182

Query: 179 TAVVSVLKKEKNIADDSQIIRL 200
            A+  V           + I+L
Sbjct: 183 YALSKVQANNDFELLVEEAIKL 204


>gi|51598286|ref|YP_072474.1| Holliday junction DNA helicase RuvA [Borrelia garinii PBi]
 gi|81610281|sp|Q662Y9|RUVA_BORGA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|51572857|gb|AAU06882.1| Holliday junction DNA helicase [Borrelia garinii PBi]
          Length = 196

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/211 (22%), Positives = 96/211 (45%), Gaps = 21/211 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI KI G +    E  +++      + +      L+   K+ D   LF   + R+++++L
Sbjct: 1   MINKIHGKVIEKKESSLVLMTTVFEFELLVSAFCLANF-KLSDKVELFTYLYARENELKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  +R+ F  L  V G+G R A+ VLS I   +  E+I  ++ +++++I GI  K+
Sbjct: 60  FGFLNSDERETFKSLIGVSGIGPRAALRVLSNIRYNDFKEAIDREDVELVSKIKGIGKKM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A ++   L+GK +                   + S          ++V++G+ +    + 
Sbjct: 120 AGKMFLHLQGKLL---------------INNELESSLFGFKELEESIVSMGFDRKIVNSK 164

Query: 181 VVSV--LKKEKNIADDSQ---IIRLALRAIS 206
           +     L +  N+ D  +   + +  L+ +S
Sbjct: 165 LKEACDLIEFSNLKDSEKEQFLFKEVLKRMS 195


>gi|207092382|ref|ZP_03240169.1| Holliday junction DNA helicase motor protein [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 183

 Score = 95.5 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 89/205 (43%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +    V I+VQGV Y +   +RT S L + G    L +   +R+D   L
Sbjct: 1   MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMRT-SALLEAGQKVRLKILQVIREDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DENKPARNEVFLALESLGFKSAE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INKVLKTLKPHLSIEAAIKEALQQL 181


>gi|315586830|gb|ADU41211.1| crossover junction ATP-dependent DNA helicase RuvA [Helicobacter
           pylori 35A]
          Length = 183

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 89/205 (43%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +    V I+VQGV Y +   +RT S L + G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMRT-SALLQAGQKARLKILQVIKEDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETGPACNEVFLALESLGFKSAE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INKVLKTLKPNLSTEAAIKEALQQL 181


>gi|217034714|ref|ZP_03440116.1| hypothetical protein HP9810_896g11 [Helicobacter pylori 98-10]
 gi|216942827|gb|EEC22324.1| hypothetical protein HP9810_896g11 [Helicobacter pylori 98-10]
          Length = 183

 Score = 95.2 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +      I+VQGV Y +   +RT S L + G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-SALLQAGQKTRLKILQVIKEDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETSPVRNEVFLALESLGFKSAE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INKVLKTLKPNLSTETAIKEALQQL 181


>gi|108563288|ref|YP_627604.1| Holliday junction DNA helicase RuvA [Helicobacter pylori HPAG1]
 gi|123073768|sp|Q1CSZ2|RUVA_HELPH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|107837061|gb|ABF84930.1| Holliday junction DNA helicase [Helicobacter pylori HPAG1]
          Length = 183

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +      I+VQGV Y +   +RT S L + G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-SALLETGQKVRLKILQVIKEDANLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DENRPARNEVFLALESLGFKSAE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INKVLKTLKPNLSIEAAIKEALQQL 181


>gi|237755451|ref|ZP_04584075.1| holliday junction DNA helicase RuvA [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237692383|gb|EEP61367.1| holliday junction DNA helicase RuvA [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 179

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 48/190 (25%), Positives = 85/190 (44%), Gaps = 33/190 (17%)

Query: 15  DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74
           ++++I+  G   ++  P        +      ++    +RQ+ ++L GF+S+ +R  F+ 
Sbjct: 15  NHIVIEKLGFGLLVEVPDS------EKFKENIVYTYLLVRQEDVKLLGFVSEEERDLFLK 68

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134
           L  + GVG + A+ ++S  +  E +E I   +   + +I GI  K A RI+ ELKGK   
Sbjct: 69  LIQIHGVGVKHALSIISNFSVEEFIEIIENGDVDKLTEIQGIGNKTAQRIIVELKGKIE- 127

Query: 135 LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADD 194
                               S        +SALVNLGY + ++      VLK+ K+    
Sbjct: 128 -------------------FSESDELNQLVSALVNLGYDKKESVKVAKKVLKETKD---- 164

Query: 195 SQIIRLALRA 204
              I+ AL+ 
Sbjct: 165 ---IKEALKK 171


>gi|254779490|ref|YP_003057595.1| Holliday junction DNA helicase RuvA [Helicobacter pylori B38]
 gi|254001401|emb|CAX29394.1| Holliday junction ATP-dependent DNA helicase ruvA [Helicobacter
           pylori B38]
          Length = 183

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 89/205 (43%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +      I+VQGV Y +   +RT + L ++G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-AALLQVGQKARLKILQVIKEDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DENRPARNEVFLALESLGFKSTE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INKVLKTLKPNLSIETAIKEALQQL 181


>gi|210135073|ref|YP_002301512.1| Holliday junction DNA helicase RuvA [Helicobacter pylori P12]
 gi|210133041|gb|ACJ08032.1| holliday junction DNA helicase [Helicobacter pylori P12]
          Length = 183

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 89/205 (43%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +    V I+VQGV Y +   +RT S L + G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMRT-SALLQAGQKARLKILQVIKEDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DENRPARNEVFLALESLGFKSTE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INQVLKTLKPNLSIEAAIKEALQQL 181


>gi|193216717|ref|YP_001999959.1| Holliday junction DNA helicase RuvA [Mycoplasma arthritidis
           158L3-1]
 gi|254767376|sp|B3PMK3|RUVA_MYCA5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|193002040|gb|ACF07255.1| Holliday junction DNA helicase motor protein [Mycoplasma
           arthritidis 158L3-1]
          Length = 203

 Score = 94.4 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 81/200 (40%), Gaps = 8/200 (4%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI    G I  +  +Y+++D  G   +IY P  +     K  +   +F+     +     
Sbjct: 1   MIIYKYGKIMHVNTNYLILDHNGEGDLIYAPNISRF---KKDELRKIFISQIENEYTKVT 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF +  +   F  L  +QG+G + A+ +L+ I    ++  +   N   + +IP +S KI
Sbjct: 58  YGFDNFKELVIFEDLIEIQGLGPKTAISILN-IGWENVINYVATANKGALGKIPYVSSKI 116

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A+ I+   + K       +  D +   K  A   +   F    +  +  LG+ Q Q   A
Sbjct: 117 ANAIIFSYQDKYAKFMKKLTSDEAAKIKVPASSENENKF----LDTMKMLGFKQQQIKFA 172

Query: 181 VVSVLKKEKNIADDSQIIRL 200
           +  +   +         I+L
Sbjct: 173 LDKIELNDDIETCVENAIKL 192


>gi|224532061|ref|ZP_03672693.1| holliday junction DNA helicase RuvA [Borrelia valaisiana VS116]
 gi|224511526|gb|EEF81932.1| holliday junction DNA helicase RuvA [Borrelia valaisiana VS116]
          Length = 196

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 48/211 (22%), Positives = 96/211 (45%), Gaps = 21/211 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI KI G +    E  +++      + +      L+   K+ D   LF   + R+++++L
Sbjct: 1   MINKIHGKVVEKKESSLVLMTTVFEFELLVSAFCLANF-KLSDKVELFTYLYTRENELKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  +R+ F  L  V G+G R A+ VLS I   E  ++I  ++ +++A+I GI  K+
Sbjct: 60  FGFLNSDERETFKGLIGVSGIGPRAALRVLSNIRYNEFKDAIDREDVELVAKIKGIGKKM 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A ++   L+GK +                   + S          +++++G+ +    + 
Sbjct: 120 AGKMFLHLQGKLL---------------INNELESNLFRFKELEESIISMGFDRKIVNSK 164

Query: 181 VVSV--LKKEKNIADDSQ---IIRLALRAIS 206
           +     L +  N+ D  +   + +  L+ IS
Sbjct: 165 LKEAYNLVEFSNLKDSEKEQFLFKEVLKRIS 195


>gi|308189833|ref|YP_003922764.1| Holliday junction DNA helicase [Mycoplasma fermentans JER]
 gi|319777048|ref|YP_004136699.1| holliday junction ATP-dependent DNA helicase ruva [Mycoplasma
           fermentans M64]
 gi|238809832|dbj|BAH69622.1| hypothetical protein [Mycoplasma fermentans PG18]
 gi|307624575|gb|ADN68880.1| Holliday junction DNA helicase [Mycoplasma fermentans JER]
 gi|318038123|gb|ADV34322.1| Holliday junction ATP-dependent DNA helicase RuvA [Mycoplasma
           fermentans M64]
          Length = 200

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 81/206 (39%), Gaps = 17/206 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+    G I       ++ + QGV Y I  P        +      L++          L
Sbjct: 1   MVLYRIGEIVYKNNQNLIFESQGVGYSIIFPDHAR---VEAKQKMKLYLYEIRNDYTWSL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R  FM L ++ G+G RVA  +L+     ++   I L     + +IP I+ +I
Sbjct: 58  YGFKDFKERLLFMDLINLNGIGPRVAFNILN-QGWEKVASLIALGKVDHLIEIPYINPRI 116

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A  ++ EL+ K   +++          ++        +    A   L  LG+   Q  +A
Sbjct: 117 ARIVVGELQDKWAKITNT---------QDAQKQVKNSNLLSEAKETLKMLGFKAAQIDSA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +  V   +    D   +I  A++ IS
Sbjct: 168 LTKVELNQ----DVESMIEEAIKFIS 189


>gi|308183035|ref|YP_003927162.1| Holliday junction DNA helicase RuvA [Helicobacter pylori PeCan4]
 gi|308065220|gb|ADO07112.1| Holliday junction DNA helicase RuvA [Helicobacter pylori PeCan4]
          Length = 183

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 89/205 (43%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +    V I+VQGV Y +   +RT + L + G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMRT-AALLQAGQKARLKILQVIKEDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETKPMHNEVFLALESLGFKSAE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INKVLKTLKPHLSTEAAIKEALQQL 181


>gi|261838266|gb|ACX98032.1| Holliday junction DNA helicase [Helicobacter pylori 51]
          Length = 183

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +      I+VQGV Y +   +RT S L + G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-SALLQAGQKARLKILQVIKEDVHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETSPARNEVFLALESLGFKSAE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INKVLKTLKPKLSTEAAIKEALQQL 181


>gi|317182188|dbj|BAJ59972.1| Holliday junction DNA helicase motor protein [Helicobacter pylori
           F57]
          Length = 183

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +      I+VQGV Y +   +RT S L + G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-SALLQAGQKVRLKILQVIKEDVHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETGPMRNEVFLALESLGFKSAE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INKVLKTLKPHLSTEAAIKEALQQL 181


>gi|188997620|ref|YP_001931871.1| Holliday junction DNA helicase RuvA [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932687|gb|ACD67317.1| Holliday junction DNA helicase RuvA [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 179

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/192 (23%), Positives = 88/192 (45%), Gaps = 29/192 (15%)

Query: 15  DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74
           ++++I+  G   ++  P        +      ++    +RQ+ +RL GF+S+ +R  F+ 
Sbjct: 15  NHIVIEKLGFGLLVEVPDS------EKFKENIVYTYLLVRQEDVRLLGFVSEEERDLFLK 68

Query: 75  LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134
           L  + GVG + A+ ++S  +  E +E +   +   + +I GI  K A RI+ ELKGK   
Sbjct: 69  LIQIHGVGVKHALNIISNFSVEEFIEIMENGDVDKLTEIQGIGNKTAQRIIVELKGKIE- 127

Query: 135 LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADD 194
                               +        +SALVNLGY + ++      V+K+ K+I   
Sbjct: 128 -------------------FNESDELSQLVSALVNLGYDKKESVNVAKKVIKETKDIK-- 166

Query: 195 SQIIRLALRAIS 206
            + ++ A+  +S
Sbjct: 167 -EALKKAISMLS 177


>gi|15645501|ref|NP_207676.1| Holliday junction DNA helicase RuvA [Helicobacter pylori 26695]
 gi|3122834|sp|O25549|RUVA_HELPY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|2314020|gb|AAD07932.1| Holliday junction DNA helicase (ruvA) [Helicobacter pylori 26695]
          Length = 183

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 89/205 (43%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +    V I+VQGV Y +   +RT + L + G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMRT-AALLEAGQKARLKILQVIKEDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEEGEKILFERLLKINGVGGRIALAILSSFSPNEFESIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DENRPARNEVFLALESLGFKSAE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INQVLKTLKPNLSIEAAIKEALQQL 181


>gi|317180262|dbj|BAJ58048.1| Holliday junction DNA helicase motor protein [Helicobacter pylori
           F32]
          Length = 183

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +      I+VQGV Y +   +RT S L + G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-SALLQAGQKARLKILQVIKEDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETSPTRNEVFLALESLGFKSAE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INKVLKTLKPHLSTEVAIKEALQQL 181


>gi|297380083|gb|ADI34970.1| Holliday junction DNA helicase RuvA [Helicobacter pylori v225d]
          Length = 183

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +      I+VQGV Y +   +RT S L + G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-SALLQAGQKARLKILQVIKEDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFESIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETSPVRNEVFLALESLGFKSAE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INKVLKTLKPHLSTEVAIKEALQQL 181


>gi|269792533|ref|YP_003317437.1| RuvA domain-containing protein [Thermanaerovibrio acidaminovorans
           DSM 6589]
 gi|269100168|gb|ACZ19155.1| RuvA domain protein [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 194

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 13/169 (7%)

Query: 37  CLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITAT 96
            +   G+   L V   +    I L+GF  D +R+ F+LL    GVG ++AMG+L+ +   
Sbjct: 36  EMASPGESIRLPVYLSVSDSGISLYGFGDDHERRVFLLLLQASGVGCKMAMGILNSMDKG 95

Query: 97  ELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM 156
           E++++I   +   I++  G+  K A RI  ELK K  SL        + V+         
Sbjct: 96  EVLDAIASGDVARISRAQGVGPKRAERICFELKDKVTSLGIPRGNSGALVSTGS------ 149

Query: 157 PSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
                  + AL+ LG+ + +A  A+  V  K +++ +D  ++R ALR +
Sbjct: 150 ------ILEALMGLGFSRGEAAMALGEVRSKGEDLPEDQLLLR-ALRVL 191


>gi|308063716|gb|ADO05603.1| Holliday junction DNA helicase RuvA [Helicobacter pylori Sat464]
          Length = 183

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +      I+VQGV Y +   +RT S L + G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-SALLQTGQKARLKILQVIKEDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFESIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETKPMHNEVFLALESLGFKSAE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INKVLKTLKPHLSTEAAIKEALQQL 181


>gi|217032932|ref|ZP_03438407.1| hypothetical protein HPB128_147g5 [Helicobacter pylori B128]
 gi|298736165|ref|YP_003728691.1| Holliday junction ATP-dependent DNA helicase RuvA [Helicobacter
           pylori B8]
 gi|216945342|gb|EEC24014.1| hypothetical protein HPB128_147g5 [Helicobacter pylori B128]
 gi|298355355|emb|CBI66227.1| Holliday junction ATP-dependent DNA helicase ruvA [Helicobacter
           pylori B8]
          Length = 183

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 89/205 (43%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +      I+VQGV Y +   +RT S L ++G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-SALLEVGQKARLKILQVIKEDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFESIIATKEVKKLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DENRPARNEVFLALESLGFKSTE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INKVLKTLKPHLSIEAAIKEALQQL 181


>gi|317012687|gb|ADU83295.1| Holliday junction DNA helicase RuvA [Helicobacter pylori
           Lithuania75]
          Length = 183

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +      I+VQGV Y +   +RT S L + G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-SALLQAGQKARLKILQVIKEDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFESIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DENRPARNEVFLALESLGFKSTE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INQVLKTLKPNLSIEAAIKEALQQL 181


>gi|188527709|ref|YP_001910396.1| Holliday junction DNA helicase RuvA [Helicobacter pylori Shi470]
 gi|229560035|sp|B2UU34|RUVA_HELPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|188143949|gb|ACD48366.1| Holliday junction DNA helicase motor protein [Helicobacter pylori
           Shi470]
 gi|308062206|gb|ADO04094.1| Holliday junction DNA helicase RuvA [Helicobacter pylori Cuz20]
          Length = 183

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +      I+VQGV Y +   +RT S L + G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-SALLQAGQKARLKILQVIKEDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFESIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETKPMHNEVFLALESLGFKSAE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INKVLKTLKPHLSTEAAIKEALQQL 181


>gi|307637571|gb|ADN80021.1| Holliday junction DNA helicase [Helicobacter pylori 908]
 gi|325996162|gb|ADZ51567.1| Holliday junction DNA helicase [Helicobacter pylori 2018]
 gi|325997758|gb|ADZ49966.1| Holliday junction DNA helicase [Helicobacter pylori 2017]
          Length = 183

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +      I+VQGV Y +   +RT + L + G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-AALLQAGQKARLKILQVIKEDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALTILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DENRPARNEVFLALESLGFKSAE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INPVLKTLKPNLSIEAAIKEALQQL 181


>gi|1941919|emb|CAA63622.1| orf4 [Bacillus subtilis subsp. subtilis str. 168]
          Length = 105

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 3/108 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  +KG I+ +   Y++I+  G+ Y I+ P   +    K     T+F   H+R+D   L
Sbjct: 1   MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPNPFIY---KERSQETIFTYHHIREDAFSL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSK 108
           +GF +  ++  F  L +V G+G + A+ +L       ++++I  ++  
Sbjct: 58  YGFSTREEKALFTKLLNVTGIGPKGALAILGSGDPGAVIQAIENEDEA 105


>gi|308184664|ref|YP_003928797.1| Holliday junction DNA helicase RuvA [Helicobacter pylori SJM180]
 gi|308060584|gb|ADO02480.1| Holliday junction DNA helicase RuvA [Helicobacter pylori SJM180]
          Length = 183

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +      I+VQGV Y +   +RT + L + G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-AALLQAGQKARLKILQVIKEDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DENRPVRNEVFLALESLGFKSTE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INQVLKTLKPHLSIEAAIKEALQQL 181


>gi|317011094|gb|ADU84841.1| Holliday junction DNA helicase RuvA [Helicobacter pylori
           SouthAfrica7]
          Length = 183

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +    V I+VQGV Y +   +RT S L + G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMRT-SALLQAGQKARLKILQVIKEDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKKLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETKPVYNEVFLALESLGFKSAE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  +LKK K      + I+ AL+ +
Sbjct: 157 INPILKKLKPNLGIEEAIKEALQQL 181


>gi|15611882|ref|NP_223533.1| Holliday junction DNA helicase RuvA [Helicobacter pylori J99]
 gi|6685958|sp|Q9ZKW9|RUVA_HELPJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|4155386|gb|AAD06396.1| HOLLIDAY JUNCTION DNA HELICASE [Helicobacter pylori J99]
          Length = 183

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +      I+VQGV Y +   +RT + L + G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-AALLQTGQKARLKILQVIKEDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DENRPARNEVFLALESLGFKSAE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INPVLKTLKPHLSIEAAIKEALQQL 181


>gi|332673720|gb|AEE70537.1| crossover junction ATP-dependent DNA helicase RuvA [Helicobacter
           pylori 83]
          Length = 183

 Score = 92.5 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +      I+VQGV Y +   +RT S L + G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-SALLQAGQKVRLKILQVIKEDVHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETKPMHNEVFLALESLGFKSAE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INKVLKTLKPHLSIEAAIKEALQQL 181


>gi|109947771|ref|YP_664999.1| Holliday junction DNA helicase RuvA [Helicobacter acinonychis str.
           Sheeba]
 gi|123066165|sp|Q17WH6|RUVA_HELAH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|109714992|emb|CAK00000.1| holliday junction DNA helicase [Helicobacter acinonychis str.
           Sheeba]
          Length = 183

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 24/175 (13%)

Query: 31  PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVL 90
            +RT S L + G    L +   +++D   L+GFL + ++  F  L  + GVG R+A+ +L
Sbjct: 31  SMRTASML-QTGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGVGGRIALAIL 89

Query: 91  SRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQ 150
           S  +  E    I  +  K + Q+PGI  K+A +IM +L G  I                 
Sbjct: 90  SSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQ---------------- 133

Query: 151 AHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
                       A  AL +LG+   +    +  +LKK K      + I+ AL+ +
Sbjct: 134 ---DETKPVHNEAFLALESLGFKSAE----INPILKKLKPNLSVEEAIKEALQQL 181


>gi|261839678|gb|ACX99443.1| Holliday junction DNA helicase motor protein [Helicobacter pylori
           52]
          Length = 183

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 89/205 (43%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +    V I+VQGV Y +   +R  S L ++G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMR-ASALLQMGQKARLKILQVIKEDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFESIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETSPACNEVFLALESLGFKSTE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INKVLKTLKPNLSIEAAIKEALQQL 181


>gi|15829128|ref|NP_326488.1| Holliday junction DNA helicase motor protein [Mycoplasma pulmonis
           UAB CTIP]
 gi|20455257|sp|Q98PR2|RUVA_MYCPU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|14090072|emb|CAC13830.1| HOLLIDAY JUNCTION DNA HELICASE RUVA [Mycoplasma pulmonis]
          Length = 197

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 83/200 (41%), Gaps = 18/200 (9%)

Query: 7   GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD 66
           G I  + + Y++ +     Y I     T +   +      L++     + Q  L+GF   
Sbjct: 7   GKIIHVNKKYIIFESDSAGYTINI---TRAENFEKDRTLKLYIYELSNEYQKTLYGFTHF 63

Query: 67  LDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126
            +R  F  L S+ G+G R+A+ +L+     ++   I   N + +++ P I++K   +I+ 
Sbjct: 64  KERVLFEDLISINGIGPRIALILLND-GWEKIASLIANGNWETLSRYPYINVKNCHQIIF 122

Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLK 186
           EL+ K        ++  S                 +A   L  LG+ ++Q   A+ S   
Sbjct: 123 ELQNKWAKFLEKDEKVPSA----------NIQNISDATETLKMLGFKREQIKYALESANL 172

Query: 187 KEKNIADDSQIIRLALRAIS 206
           ++    D   ++  A++ IS
Sbjct: 173 QD----DVETLVENAIKKIS 188


>gi|240047398|ref|YP_002960786.1| Holliday junction DNA helicase RuvA [Mycoplasma conjunctivae
           HRC/581]
 gi|239984970|emb|CAT04963.1| Holliday junction ATP-dependent DNA helicase r [Mycoplasma
           conjunctivae]
          Length = 217

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 48/217 (22%), Positives = 88/217 (40%), Gaps = 21/217 (9%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61
           I KI G I    ++Y++++  G  Y+IY P   +    +  +   ++V           +
Sbjct: 3   IYKI-GKIVSKNKNYLILEQAGNGYLIYTPN--IERFNR-DEKRKIYVYEFENDYSKITY 58

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF +  +R  F  L S+QG+G + AM  L+ I   ++++ I   + K +++I  IS + A
Sbjct: 59  GFDNFKERILFEDLISIQGIGPKTAMIALN-IGWQKIIDYIAAGDWKSLSKIQYISDRNA 117

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS------------MPSFAINAISALVN 169
            +I+ E + K   L    +   +                           AI     L  
Sbjct: 118 KQIIFEFQKKYTKLIESAKNQTTTQENNTKQADEVIDEHLMQKTLLEQKTAIELEDTLKI 177

Query: 170 LGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           LG+ + Q   A+ +V   E        +I  A++ IS
Sbjct: 178 LGFQKRQINYALANVEPTE----SFEHLIEEAIKLIS 210


>gi|317014289|gb|ADU81725.1| Holliday junction DNA helicase RuvA [Helicobacter pylori
           Gambia94/24]
          Length = 183

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +      I+VQGV Y +   +RT + L + G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-AALLQAGQKARLKILQVIKEDANLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEEGEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DENRPARNEVFLALESLGFKSAE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INPVLKTLKPHLSIEAAIKEALQQL 181


>gi|208434791|ref|YP_002266457.1| Holliday junction DNA helicase [Helicobacter pylori G27]
 gi|226698733|sp|B5Z7P2|RUVA_HELPG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|208432720|gb|ACI27591.1| Holliday junction DNA helicase [Helicobacter pylori G27]
          Length = 183

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  + G +E +      I+VQGV Y +   +RT + L + G    L +   +++D   L
Sbjct: 1   MIVGLIGVVEKISALETHIEVQGVVYGVQVSMRT-AALLQAGQKARLKILQVIKEDAHLL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GFL + ++  F  L  + GVG R+A+ +LS  +  E    I  +  K + Q+PGI  K+
Sbjct: 60  YGFLEEGEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +IM +L G  I                                AL +LG+   +    
Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETKPMHNEVFLALESLGFKSAE---- 156

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  VLK  K        I+ AL+ +
Sbjct: 157 INKVLKTLKPSLSIEAAIKEALQQL 181


>gi|254821998|ref|ZP_05226999.1| Holliday junction DNA helicase RuvA [Mycobacterium intracellulare
           ATCC 13950]
          Length = 105

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 1/106 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI  ++G +  +  D+ +I+  GV Y +     TLS L + G    L     +R+D + L
Sbjct: 1   MIAAVRGEVLEVALDHAVIEAAGVGYRVNATPSTLSTL-RTGTEARLITAMIVREDSMTL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQN 106
           +GF     R  F+ L SV GVG R+AM  L+   A  L +++   +
Sbjct: 60  YGFTDTDTRDLFLTLLSVSGVGPRLAMATLAVHDAGALRQALHDGD 105


>gi|308190042|ref|YP_003922973.1| Holliday junction DNA helicase RuvA [Mycoplasma fermentans JER]
 gi|307624784|gb|ADN69089.1| Holliday junction DNA helicase RuvA [Mycoplasma fermentans JER]
          Length = 195

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 81/205 (39%), Gaps = 17/205 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+   KG I       ++ +   V Y +  P      L        +++          L
Sbjct: 1   MVLYRKGKIVYKDGKNLIFESDNVGYYVMFPDNKRIKL---NQEIKMYLYEIKNDFTWSL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ FM L ++ G+G RVA  VL+     + +  I   N + IA+I  I+ ++
Sbjct: 58  YGFKELEERKLFMDLINLNGIGPRVAFNVLNV-GFDKAINLIRDGNIEEIAKIEYINPRL 116

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A  I+ EL+ K   +++          ++        +    A   L  LG+   Q  +A
Sbjct: 117 ARIIVEELQDKWAKITNT---------QDAQKQVKNSNLLSEAKEILKMLGFKAAQIDSA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           +  V   +    D   +I  A++ +
Sbjct: 168 LTKVELNQ----DVESMIEEAIKLM 188


>gi|255027975|ref|ZP_05299961.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes FSL
           J2-003]
          Length = 110

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 1/110 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   IKG +  +  +Y++++   + Y I       S     G    +F+  H+R+D I L
Sbjct: 1   MYDYIKGTVTTITPEYIVVEAGQIGYQI-ITGNPFSFQRLEGTEAQVFLYQHVREDNISL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVI 110
           FGF +  +R  F  L SV G+G + A+ +++      L+ +I  ++   +
Sbjct: 60  FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLISAIESEDDVYL 109


>gi|283456064|ref|YP_003360628.1| Holliday junction DNA helicase ruvA [Bifidobacterium dentium Bd1]
 gi|283102698|gb|ADB09804.1| Holliday junction DNA helicase ruvA [Bifidobacterium dentium Bd1]
          Length = 168

 Score = 88.2 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 44/169 (26%), Positives = 85/169 (50%), Gaps = 13/169 (7%)

Query: 42  GDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVES 101
           G    ++   ++ QD I LFGFL+   ++ F+ LQ V G+G +VA+ +LS +    L  +
Sbjct: 4   GQEVKVYTSLNVSQDAITLFGFLTPASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLAHA 63

Query: 102 IILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI 161
           +   ++  +A+ PG+  K A +I+ ELKG      S ++   S +++         + + 
Sbjct: 64  VADGDATALAKAPGLGKKGAQKIILELKGSID--LSQIETAASVISR------PEDTGSE 115

Query: 162 NAISALVNLGYGQDQATTAVVSVLKKEK-----NIADDSQIIRLALRAI 205
             +  L++LG+ Q  A  AV  V +        +  D  ++++LAL ++
Sbjct: 116 QVVEGLISLGWRQQDALHAVQEVCRSNDIATPLSNEDVPRVLKLALTSL 164


>gi|1361545|pir||F64239 Holliday junction DNA helicase ruvA homolog - Mycoplasma genitalium
          Length = 260

 Score = 87.8 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 80/209 (38%), Gaps = 18/209 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRT-LSCLGKIGDFCTLFVETHMRQDQ-- 57
           MI  I G +  + +  ++++   + Y              +        +   +  +Q  
Sbjct: 56  MITSIFGKVTFVGKRKIIVEHNWISYWFNTKENHKFEKNLEKNKQIFCHIIKKIVANQII 115

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
              F F +  +++WF  L  + G+G++ A+ +L+     E+ + I+  N   +  I G++
Sbjct: 116 EEAFAFNTLEEKEWFCRLIELNGIGSKTALNLLNN-DLEEIKQYILENNYSALCGINGVN 174

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            KIA  ++             ++      N +      +          L +LGY Q + 
Sbjct: 175 NKIARALL------------SLEIFEKSENNKNIKGVQVADGYDELFETLKSLGYKQQEI 222

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
             A+  +  + K   D SQ++   ++ +S
Sbjct: 223 QDALKMI--EVKPDFDISQLVAEVIKLMS 249


>gi|224540664|ref|ZP_03681203.1| hypothetical protein BACCELL_05578 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224517736|gb|EEF86841.1| hypothetical protein BACCELL_05578 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 82

 Score = 87.8 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 1/82 (1%)

Query: 1  MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
          MI  I+G +  L     +ID  G+ Y +   + T + + +    C L++   +R+D   L
Sbjct: 1  MIEYIRGGLAELSPATAVIDCNGLGYAVNISLNTYAAI-QGKKECKLYIYEAIREDAYVL 59

Query: 61 FGFLSDLDRQWFMLLQSVQGVG 82
          +GF    +R+ F+LL SV G+G
Sbjct: 60 YGFADKQERELFLLLISVSGIG 81


>gi|153827628|ref|ZP_01980295.1| holliday junction ATP-dependent DNA helicase RuvA [Vibrio cholerae
           MZO-2]
 gi|149737900|gb|EDM52805.1| holliday junction ATP-dependent DNA helicase RuvA [Vibrio cholerae
           MZO-2]
          Length = 120

 Score = 87.5 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 4/122 (3%)

Query: 85  VAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS-SVVQQDM 143
           + + +LS +TA + V  +  ++   + ++PG+  K A R++ E+K +        +    
Sbjct: 1   MGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKTAERLVVEMKDRLKGWGAGDLFTPA 60

Query: 144 SCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
           +      +      +    A+SAL+ LGY   QA+ AV  V K         ++IR AL+
Sbjct: 61  TDAAPVDSTPVIAQNAQEEAMSALLALGYKPPQASKAVSQVAKA---GMSSEELIREALK 117

Query: 204 AI 205
           ++
Sbjct: 118 SM 119


>gi|167005424|ref|ZP_02271182.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 135

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 2/135 (1%)

Query: 1   MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59
           M+  I+G I      ++++    G+ Y I+  +   + + +  +    F+   +++D  +
Sbjct: 1   MVVGIEGIITKKEPTFIIVKCASGLSYGIFISLFCSAKI-QTQEKHEFFITQIIKEDSNK 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
            +GFL   +++ F +L  V GVGA  AM V S +      +++ L +  V+ ++PGI  K
Sbjct: 60  FYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDVNSFYKALSLGDESVLKKVPGIGPK 119

Query: 120 IASRIMTELKGKAIS 134
            A RI+ EL      
Sbjct: 120 SAKRIIVELSDTKTK 134


>gi|213029463|ref|ZP_03343910.1| Holliday junction DNA helicase motor protein [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 96

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 48/96 (50%)

Query: 25  CYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGAR 84
            Y ++ P+     L + G    +F    +R+D   L+GF +  +R  F  L    GVG +
Sbjct: 1   GYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIKTNGVGPK 60

Query: 85  VAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +A+ +LS ++A + V ++  +    + ++PGI  K 
Sbjct: 61  LALAILSGMSAQQFVNAVEREELGALVKLPGIGKKT 96


>gi|297520077|ref|ZP_06938463.1| Holliday junction DNA helicase RuvA [Escherichia coli OP50]
          Length = 108

 Score = 84.8 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 3/109 (2%)

Query: 96  TELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS 155
            + V ++  +    + ++PGI  K A R++ E+K +   L   +    + +        +
Sbjct: 1   QQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPA 60

Query: 156 MPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204
                  A++ALV LGY   +A+  V  + +     A    +IR ALRA
Sbjct: 61  TNDAEQEAVAALVALGYKPQEASRMVSKIAR---PDASSETLIREALRA 106


>gi|205374298|ref|ZP_03227097.1| Holliday junction DNA helicase motor protein [Bacillus coahuilensis
           m4-4]
          Length = 148

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 66/147 (44%), Gaps = 4/147 (2%)

Query: 59  RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118
            L+GFL+  ++  FM L +V G+G + A+ +L     + ++ +I  +N   + + PG+  
Sbjct: 3   SLYGFLTMEEKLLFMKLLNVTGIGPKGALAILGSGDVSGVIHAIEEENEAFLVKFPGVGK 62

Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178
           K A +++ +LKGK   +      ++    K      S   F   AI AL  LGY   +  
Sbjct: 63  KTARQMILDLKGKLQDVVPDFFPNLFQPEK--EDTLSSDHFLNEAILALKALGYSDRELK 120

Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205
                +  + +      + I+  L+ +
Sbjct: 121 KVEPKL--RNEPGKTSDEYIKRGLQLL 145


>gi|269114958|ref|YP_003302721.1| holliday junction DNA helicase ruvA [Mycoplasma hominis]
 gi|268322583|emb|CAX37318.1| Holliday junction DNA helicase ruvA [Mycoplasma hominis ATCC 23114]
          Length = 206

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 79/196 (40%), Gaps = 7/196 (3%)

Query: 4   KIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGF 63
            + G I  +  +Y+++D  G   +IY             D   +F+   + + +   +GF
Sbjct: 4   YLYGKIMHVNTNYLILDHNGEGELIYVAD---IKRFNKDDLRKIFIYDVVNEYKKTTYGF 60

Query: 64  LSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASR 123
            +  +   F  L S+QG+G + A+ +L+      L++ I  ++   + +   +S++IA+ 
Sbjct: 61  ENFKELIIFEDLISLQGLGPKTAISLLNL-GWENLIQLIANEDKDKLCEASYVSLRIANN 119

Query: 124 IMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVS 183
           I+   K K     S +  +     K +    S+          +  LG+ + Q + A+  
Sbjct: 120 IIFAYKQKYAKFLSKLSDEDLLKIKSKNTSDSLREKFEY---TMRMLGFKKQQISYALEK 176

Query: 184 VLKKEKNIADDSQIIR 199
           +   E         I+
Sbjct: 177 MSITENIEESVENAIK 192


>gi|108885107|ref|NP_073029.2| Holliday junction DNA helicase RuvA [Mycoplasma genitalium G37]
 gi|2498869|sp|Q49424|RUVA_MYCGE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|84626136|gb|AAC71583.2| Holliday junction DNA helicase [Mycoplasma genitalium G37]
 gi|166078725|gb|ABY79343.1| Holliday junction DNA helicase [synthetic Mycoplasma genitalium
           JCVI-1.0]
          Length = 205

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 80/209 (38%), Gaps = 18/209 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRT-LSCLGKIGDFCTLFVETHMRQDQ-- 57
           MI  I G +  + +  ++++   + Y              +        +   +  +Q  
Sbjct: 1   MITSIFGKVTFVGKRKIIVEHNWISYWFNTKENHKFEKNLEKNKQIFCHIIKKIVANQII 60

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
              F F +  +++WF  L  + G+G++ A+ +L+     E+ + I+  N   +  I G++
Sbjct: 61  EEAFAFNTLEEKEWFCRLIELNGIGSKTALNLLNN-DLEEIKQYILENNYSALCGINGVN 119

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            KIA  ++             ++      N +      +          L +LGY Q + 
Sbjct: 120 NKIARALL------------SLEIFEKSENNKNIKGVQVADGYDELFETLKSLGYKQQEI 167

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
             A+  +  + K   D SQ++   ++ +S
Sbjct: 168 QDALKMI--EVKPDFDISQLVAEVIKLMS 194


>gi|13358012|ref|NP_078286.1| holliday-junction binding protein [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|170762222|ref|YP_001752534.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           parvum serovar 3 str. ATCC 27815]
 gi|171920473|ref|ZP_02690444.2| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           parvum serovar 1 str. ATCC 27813]
 gi|183508627|ref|ZP_02689294.2| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           parvum serovar 14 str. ATCC 33697]
 gi|186701725|ref|ZP_02971417.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           parvum serovar 6 str. ATCC 27818]
 gi|20455274|sp|Q9PQ41|RUVA_UREPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189045777|sp|B1AJ90|RUVA_UREP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|11356864|pir||G82889 holliday-junction binding protein UU449 [imported] - Ureaplasma
           urealyticum
 gi|6899441|gb|AAF30861.1|AE002141_7 holliday-junction binding protein [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|168827799|gb|ACA33061.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           parvum serovar 3 str. ATCC 27815]
 gi|171902931|gb|EDT49220.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           parvum serovar 1 str. ATCC 27813]
 gi|182676086|gb|EDT87991.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           parvum serovar 14 str. ATCC 33697]
 gi|186700992|gb|EDU19274.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           parvum serovar 6 str. ATCC 27818]
          Length = 195

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 83/205 (40%), Gaps = 27/205 (13%)

Query: 8   NIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL------F 61
            +     + V+ +   + Y I  P      L +I  FC L++  ++     +       +
Sbjct: 7   KVIYANANIVVGEHNFIGYQIRIPKD--YEL-EINKFCKLYLYEYISIMPNKNLIIKDLY 63

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF +  +R  F+ L S+  +G + A+ +L       ++++I  +N   +  I GI+ + A
Sbjct: 64  GFRTYNERLLFIDLISINSIGPKTAINILK-YDIDTIIDAIATKNIDYLITIKGINQRNA 122

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
           + I  +L  K I+                  +    ++A      L NLGY +     A+
Sbjct: 123 NLICDQLNYKYIN-----------------KVNDKNNWAKELSIGLENLGYTKKDIEYAI 165

Query: 182 VSVLKKEKNIADDSQIIRLALRAIS 206
             V    +   D S+II  A++ IS
Sbjct: 166 TKVKINSQQDIDISEIISSAIKEIS 190


>gi|144900756|emb|CAM77620.1| Bacterial DNA recombination protein, RuvA [Magnetospirillum
          gryphiswaldense MSR-1]
          Length = 75

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/75 (48%), Positives = 51/75 (68%), Gaps = 1/75 (1%)

Query: 1  MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
          MI K+KG I+ L +D+ ++DV GV Y+++C  RTL  L ++G    L VETH+R+D I L
Sbjct: 1  MIAKLKGLIDSLGDDFTVVDVGGVGYLVFCSGRTLGRL-QVGIAAALHVETHVREDHIHL 59

Query: 61 FGFLSDLDRQWFMLL 75
          +GFL   +R WF LL
Sbjct: 60 YGFLEPGERDWFNLL 74


>gi|71894187|ref|YP_278295.1| Holliday junction DNA helicase motor protein [Mycoplasma synoviae
           53]
 gi|123747949|sp|Q4A6N7|RUVA_MYCS5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|71850975|gb|AAZ43584.1| holliday junction DNA helicase RuvA [Mycoplasma synoviae 53]
          Length = 198

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 69/192 (35%), Gaps = 14/192 (7%)

Query: 7   GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD 66
           G I     + ++++ +G   ++     +       G+   L++         + +GF + 
Sbjct: 7   GEIVYKNNNNIILESKGEGNLVTICDNSRYS---KGEKLKLYLYEVKNDYIQQTYGFKTF 63

Query: 67  LDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126
            +R  F  L S+  +G + AM +L       +   I   + K I++I  IS K A  I  
Sbjct: 64  KERLLFTDLISIDKIGPKTAMLILD-QNWELVANLIAEGDWKEISKINYISDKSAKLICV 122

Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLK 186
           ELK K   +          +  ++       +        L  LG+       AV ++  
Sbjct: 123 ELKDKWAKI----------IQNKEVKKFDDITNIKELKQTLNKLGFKASDIDYAVNNISS 172

Query: 187 KEKNIADDSQII 198
            ++      + I
Sbjct: 173 TKELDLMVEESI 184


>gi|297183320|gb|ADI19457.1| holliday junction resolvasome, DNA-binding subunit [uncultured
          bacterium HF0500_16O16]
          Length = 69

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 31/67 (46%)

Query: 1  MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
          MI  ++G +        +IDV GV Y +   + T   L  +G    L   T++R+D++ L
Sbjct: 1  MIDFLRGTLHERTPTRAVIDVGGVGYGVAISLTTYDRLPSVGTEIFLHTYTYVREDRLDL 60

Query: 61 FGFLSDL 67
          +G     
Sbjct: 61 YGIADAE 67


>gi|294155532|ref|YP_003559916.1| Holliday junction DNA helicase RuvA [Mycoplasma crocodyli MP145]
 gi|291599949|gb|ADE19445.1| Holliday junction DNA helicase RuvA [Mycoplasma crocodyli MP145]
          Length = 201

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 75/194 (38%), Gaps = 11/194 (5%)

Query: 7   GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD 66
           G I       ++++  G  Y+I         L        L    +       ++GF   
Sbjct: 7   GEIVYKKNKNLILESYGTGYMIQVACADRFEL-NTKLKMHLAYIYNEFAKTFSIYGFKDY 65

Query: 67  LDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126
           ++R  F+ L +V G+GA++AM +L       + + +   N + ++++  ++ K A  I+ 
Sbjct: 66  MERILFLDLINVNGIGAKIAMNILDN-GWETVADLVASANYETLSKLNFVNEKNARNIIL 124

Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLK 186
            L+ K   + +V                   +   +   +L  LG+ + Q + A+  +  
Sbjct: 125 SLQDKWKKIRNV---------SNSNETAKNINALSDVSESLKMLGFKEKQISYALSKIKI 175

Query: 187 KEKNIADDSQIIRL 200
            E+      Q I+L
Sbjct: 176 SEQLEDMVEQSIKL 189


>gi|153827627|ref|ZP_01980294.1| Holliday junction DNA helicase RuvA [Vibrio cholerae MZO-2]
 gi|149737899|gb|EDM52804.1| Holliday junction DNA helicase RuvA [Vibrio cholerae MZO-2]
          Length = 66

 Score = 82.5 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 33/63 (52%)

Query: 1  MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
          MIG+++G +       +LI++ G+ Y +  P+  +  L  IG+   ++    +R+D   L
Sbjct: 1  MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60

Query: 61 FGF 63
          +G 
Sbjct: 61 YGL 63


>gi|291084730|ref|ZP_06541669.2| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 102

 Score = 82.5 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 27/57 (47%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQI 58
           IG+++G I       VL++  GV Y ++ P+     L + G    +F    +R+D  
Sbjct: 46  IGRLRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQ 102


>gi|257462985|ref|ZP_05627389.1| Holliday junction DNA helicase ruvA [Fusobacterium sp. D12]
 gi|317060603|ref|ZP_07925088.1| holliday junction DNA helicase ruvA [Fusobacterium sp. D12]
 gi|313686279|gb|EFS23114.1| holliday junction DNA helicase ruvA [Fusobacterium sp. D12]
          Length = 101

 Score = 82.5 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 57/102 (55%), Gaps = 1/102 (0%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   +KG +     +Y  +DV GV Y +Y  +R    + ++G    +++  H+R+ + +L
Sbjct: 1   MFEYLKGFVSYKKPEYFALDVHGVAYRVYISLRMYEKI-ELGQEYQIYIYNHIREGEYKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESI 102
            GFL + +R+ F LL SV+G+G  +A+  LS  +  +LV  I
Sbjct: 60  IGFLEEKERKLFELLLSVKGIGISLALAALSTYSVEQLVAYI 101


>gi|203283953|ref|YP_002221693.1| Holliday junction DNA helicase [Borrelia duttonii Ly]
 gi|226698725|sp|B5RLN1|RUVA_BORDL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|201083396|gb|ACH92987.1| Holliday junction DNA helicase [Borrelia duttonii Ly]
          Length = 196

 Score = 82.1 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 48/211 (22%), Positives = 88/211 (41%), Gaps = 21/211 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI KI G I    E  ++I      + I         L ++ +   +    H R D ++L
Sbjct: 1   MINKIYGKIVDKKESSIIILAFPFEFEILVSSFCKMEL-RLLEDVEILTYFHFRDDDVKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  +R+ F  L  V G+G + A+ +LS I       +I  ++  +I+++ GI  KI
Sbjct: 60  FGFLNISEREVFEDLIGVDGIGPKAALKILSGIKYDAFRLAIAKEDINLISKVKGIGNKI 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I  +L+GK +         +                      ++VN+G+ +     A
Sbjct: 120 AGKIFLKLRGKLVKGDESSSYMLK---------------FKELEQSIVNMGFDRKLVVVA 164

Query: 181 VVSVLKKEK----NIADDSQ-IIRLALRAIS 206
              ++  +K      A+  Q +    L+ +S
Sbjct: 165 FREIMLSDKFLILKEAEQEQFLFTETLKRLS 195


>gi|161621805|ref|YP_015967.2| Holliday junction DNA helicase motor protein [Mycoplasma mobile
           163K]
          Length = 201

 Score = 81.7 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 87/207 (42%), Gaps = 20/207 (9%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFC--TLFVETHMRQDQIR 59
           I KI G I    ++Y L++     ++IY      + L K        +F+  H       
Sbjct: 3   IYKI-GKIVSFGKNYFLLESNYEGFLIYA-----AELEKFEKDVVTKVFIYKHENAYSKT 56

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  +R  F+ L S+ G+G + A+  L      E++  I   + + ++++P + +K
Sbjct: 57  LYGFKTFKERLLFIDLLSINGIGPKTALMALES-GYLEIMNLISNNDFETLSKLPFLGLK 115

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +I  E + K  +L       +   N       S         + L  LG+  +Q   
Sbjct: 116 SAKQICFEFQSKYANL-------LEKENSGNLKFESKTKKITELSNTLKTLGFKTNQINY 168

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           A+ ++  K     D  +++  +++ I+
Sbjct: 169 AISNINDKN----DIEEMLEESIQLIA 191


>gi|203287496|ref|YP_002222511.1| Holliday junction DNA helicase [Borrelia recurrentis A1]
 gi|226698726|sp|B5RQK6|RUVA_BORRA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|201084716|gb|ACH94290.1| Holliday junction DNA helicase [Borrelia recurrentis A1]
          Length = 196

 Score = 81.7 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 48/211 (22%), Positives = 88/211 (41%), Gaps = 21/211 (9%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MI KI G I    E  ++I      + I         L ++ +   +    H R D ++L
Sbjct: 1   MINKIYGKIVDKKESSIIILAFPFEFEILVSSFCKMEL-RLLEDVEILTYFHFRDDDVKL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGFL+  +R+ F  L  V G+G + A+ +LS I       +I  ++  +I+++ GI  KI
Sbjct: 60  FGFLNISEREVFENLIGVDGIGPKAALKILSGIKYDAFRLAIAKEDINLISKVKGIGNKI 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A +I  +L+GK +         +                      ++VN+G+ +     A
Sbjct: 120 AGKIFLKLRGKLVKGDESSSYMLK---------------FKELEQSIVNMGFDRKLVVVA 164

Query: 181 VVSVLKKEK----NIADDSQ-IIRLALRAIS 206
              ++  +K      A+  Q +    L+ +S
Sbjct: 165 FREIMLSDKFLILKEAEQEQFLFTETLKRLS 195


>gi|47458434|gb|AAT27756.1| holliday junction DNA helicase RuvA [Mycoplasma mobile 163K]
          Length = 204

 Score = 81.7 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 87/207 (42%), Gaps = 20/207 (9%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFC--TLFVETHMRQDQIR 59
           I KI G I    ++Y L++     ++IY      + L K        +F+  H       
Sbjct: 6   IYKI-GKIVSFGKNYFLLESNYEGFLIYA-----AELEKFEKDVVTKVFIYKHENAYSKT 59

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           L+GF +  +R  F+ L S+ G+G + A+  L      E++  I   + + ++++P + +K
Sbjct: 60  LYGFKTFKERLLFIDLLSINGIGPKTALMALES-GYLEIMNLISNNDFETLSKLPFLGLK 118

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            A +I  E + K  +L       +   N       S         + L  LG+  +Q   
Sbjct: 119 SAKQICFEFQSKYANL-------LEKENSGNLKFESKTKKITELSNTLKTLGFKTNQINY 171

Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206
           A+ ++  K     D  +++  +++ I+
Sbjct: 172 AISNINDKN----DIEEMLEESIQLIA 194


>gi|256384343|gb|ACU78913.1| holliday junction DNA helicase RuvA [Mycoplasma mycoides subsp.
           capri str. GM12]
 gi|256385175|gb|ACU79744.1| holliday junction DNA helicase RuvA [Mycoplasma mycoides subsp.
           capri str. GM12]
 gi|296455994|gb|ADH22229.1| holliday junction DNA helicase RuvA [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 186

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 73/206 (35%), Gaps = 24/206 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  + + Y+ I+     Y        L  L K+     +++  ++  +  + 
Sbjct: 1   MNDYINGLLHKIDDKYLYIESNNSGYRFLYLKSDLKDL-KLNQNNQVYIAINVIDNVFKY 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + L R  F LL ++  +G + A  +L      EL++      +  I Q+ GI    
Sbjct: 60  YGFKNQLIRDLFELLININTIGEKTAFLILENYNYNELIDIFKNGRTDKILQLKGIGSYT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A  I+  ++ +  +                     +       I++L  LGY        
Sbjct: 120 ARLIINSVQKELFN-------------------NKISDKKNKVITSLEKLGYKTKDIYKI 160

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           ++++            + +  L  +S
Sbjct: 161 IINI----DENMSIEDLTKYVLEQLS 182


>gi|13508274|ref|NP_110224.1| Holliday junction DNA helicase motor protein [Mycoplasma pneumoniae
           M129]
 gi|2498870|sp|P75243|RUVA_MYCPN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|1673979|gb|AAB95955.1| Holliday junction DNA helicase RuvA [Mycoplasma pneumoniae M129]
 gi|301633407|gb|ADK86961.1| Holliday junction DNA helicase RuvA [Mycoplasma pneumoniae FH]
          Length = 206

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 75/209 (35%), Gaps = 17/209 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSC--LGKIGD-FCTLFVETHMRQDQ 57
           MI  I G I  + +  ++++   + Y             L K    FC +       Q  
Sbjct: 1   MIASIFGKITFVGKRKIIVEANCISYWFNVKENHSFEKNLEKPRQVFCQIIKRMVTNQIL 60

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
              F F +  +++WF     + G+G++ A+ +       E+ + I   N   + ++ G +
Sbjct: 61  EEGFAFNTLEEKEWFSKFIELNGIGSKTALNL-LNNNLEEMRDYIKNSNYHALTKLTGSN 119

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
            K+A  ++                D     K      +M +        L +LGY     
Sbjct: 120 SKVARALLALELY-----------DRDDGGKRIKPNTAMANDYDEMFDTLKSLGYKPQDI 168

Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206
             A+  +  + K   D S++I   ++ +S
Sbjct: 169 QNALSKI--EIKPNFDVSEVIAEVIKLMS 195


>gi|331703541|ref|YP_004400228.1| Holliday junction DNA helicase RuvA [Mycoplasma mycoides subsp.
           capri LC str. 95010]
 gi|328802096|emb|CBW54250.1| Holliday junction DNA helicase RuvA [Mycoplasma mycoides subsp.
           capri LC str. 95010]
          Length = 186

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 73/206 (35%), Gaps = 24/206 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  + + Y+ I+     Y        L  L K+     ++V  ++  +  + 
Sbjct: 1   MNDYINGLLHKIDDKYLYIESNNSGYRFLYLKSDLKDL-KLDQNNQVYVAINVIDNVFKY 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF   L R  F LL ++  +G + A  +L      EL++      +  I Q+ GI    
Sbjct: 60  YGFKDQLIRDLFELLININTIGEKTAFLILENYNYNELIDIFKNGRTDKILQLKGIGSYT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A  I+  ++ +  +                     +       I++L  LGY        
Sbjct: 120 ARLIINSVQKELFN-------------------NKISDKKNKVITSLEKLGYKTKDIYKI 160

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           ++++        +   + +  L  +S
Sbjct: 161 IINI----DEDMNIEDLTKYVLEQLS 182


>gi|42561075|ref|NP_975526.1| holliday junction DNA helicase RuvA [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|81400587|sp|Q6MT68|RUVA_MYCMS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|42492572|emb|CAE77168.1| holliday junction DNA helicase RuvA [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|301320398|gb|ADK69041.1| putative Holliday junction DNA helicase RuvA [Mycoplasma mycoides
           subsp. mycoides SC str. Gladysdale]
          Length = 186

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 75/206 (36%), Gaps = 24/206 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  + + Y+ I++    Y        L  L K+     ++V  ++  +  + 
Sbjct: 1   MNDYINGLLHKIDDKYLYIELNNSGYRFLYLKTDLKDL-KLNQNNQVYVAINVIDNVFKY 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + L R  F LL ++  +G + A  +L      EL++      +  I Q+ GI    
Sbjct: 60  YGFKNQLIRDLFELLININTIGEKTAFLILENYNYNELIDIFKNGRTDKILQLKGIGNYT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A  I+  ++ +  +                     +       I++L  LGY        
Sbjct: 120 ARLIINSVQKELFN-------------------NKISDKKNKVITSLEKLGYKTKDIYKI 160

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           ++++        +   + +  L  +S
Sbjct: 161 IINI----DEDMNIEDLTKYVLEQLS 182


>gi|1620916|emb|CAA70096.1| specificity factor of RuvAB helicase [Borrelia burgdorferi]
          Length = 178

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 86/186 (46%), Gaps = 20/186 (10%)

Query: 26  YIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARV 85
           + +      L+    + D   LF   + R+++++LFGFL+  +R+ F  L  V GVG R 
Sbjct: 7   FELLVSAFCLANF-NLSDKVELFTYLYTRENELKLFGFLNSDEREIFKELIGVSGVGPRA 65

Query: 86  AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSC 145
           A+ VLS I   E  E+I  ++ +++++I GI  K+A ++   L+GK +  S +    +  
Sbjct: 66  ALRVLSNIRYNEFKEAIDREDIELVSKIKGIGKKMAGKMFLHLQGKLLINSELESTGLF- 124

Query: 146 VNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV--LKKEKNIADDSQ---IIRL 200
                               ++V++G+ +    + +     L +  N+ D  +   + + 
Sbjct: 125 -------------RFKELEESIVSMGFDRKIVNSKIREAFNLAEFANLKDSEKEQFLFKE 171

Query: 201 ALRAIS 206
            L+ IS
Sbjct: 172 VLKRIS 177


>gi|284931638|gb|ADC31576.1| Holliday junction ATP-dependent DNA helicase ruvA [Mycoplasma
           gallisepticum str. F]
          Length = 226

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 88/221 (39%), Gaps = 19/221 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ--- 57
           MI  +   IE +    +L       Y +     +            L   T + Q+    
Sbjct: 1   MITSVYAKIEYVTNTKMLFVANNWGYWVNVKPNSGFSRTDNNVLVFLHELTFLAQNNAIN 60

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
             L+ F S  +++WF  L ++ G+G + AM V+      E++  I   +   + ++  I+
Sbjct: 61  KELYAFKSLKEKEWFKTLLTINGIGPKTAMNVMVNK-QEEVLTLIKNNDLNGLLRLENIN 119

Query: 118 MKIASRIMTE-------------LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI 164
            K+A+ ++               +  K      +   +    +K+      +    I AI
Sbjct: 120 KKVATMLLASDIASKHYLKNQIVVSDKVE--PQIDDDEKIDDSKDLNDDELLSEIVIEAI 177

Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
             L++LGY Q+Q  TA+  +  K ++I D + ++ + ++ I
Sbjct: 178 DCLISLGYKQEQIKTALAEIDLKNESINDSADLVAVIIKQI 218


>gi|171920937|ref|ZP_02696104.2| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           urealyticum serovar 13 str. ATCC 33698]
 gi|185178954|ref|ZP_02555140.2| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           urealyticum serovar 5 str. ATCC 27817]
 gi|188024044|ref|ZP_02569578.2| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           urealyticum serovar 7 str. ATCC 27819]
 gi|188518273|ref|ZP_02555997.2| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           urealyticum serovar 11 str. ATCC 33695]
 gi|188524367|ref|ZP_02558092.2| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           urealyticum serovar 12 str. ATCC 33696]
 gi|195867795|ref|ZP_03079795.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           urealyticum serovar 9 str. ATCC 33175]
 gi|198273854|ref|ZP_03206388.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           urealyticum serovar 4 str. ATCC 27816]
 gi|209554366|ref|YP_002284876.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           urealyticum serovar 10 str. ATCC 33699]
 gi|225550585|ref|ZP_03771534.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           urealyticum serovar 2 str. ATCC 27814]
 gi|225551217|ref|ZP_03772163.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           urealyticum serovar 8 str. ATCC 27618]
 gi|254767398|sp|B5ZBT6|RUVA_UREU1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|171903169|gb|EDT49458.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           urealyticum serovar 13 str. ATCC 33698]
 gi|184209229|gb|EDU06272.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           urealyticum serovar 5 str. ATCC 27817]
 gi|188019075|gb|EDU57115.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           urealyticum serovar 7 str. ATCC 27819]
 gi|188998198|gb|EDU67295.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           urealyticum serovar 11 str. ATCC 33695]
 gi|195660085|gb|EDX53465.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           urealyticum serovar 12 str. ATCC 33696]
 gi|195660492|gb|EDX53749.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           urealyticum serovar 9 str. ATCC 33175]
 gi|198249609|gb|EDY74391.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           urealyticum serovar 4 str. ATCC 27816]
 gi|209541867|gb|ACI60096.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           urealyticum serovar 10 str. ATCC 33699]
 gi|225379032|gb|EEH01397.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           urealyticum serovar 8 str. ATCC 27618]
 gi|225379739|gb|EEH02101.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma
           urealyticum serovar 2 str. ATCC 27814]
          Length = 195

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 85/205 (41%), Gaps = 27/205 (13%)

Query: 8   NIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETH--MRQDQIRL----F 61
            +     + V+ +   + Y I  P      L ++  FC L++  +  +  ++  +    +
Sbjct: 7   KVIYANANVVIGEHNFIGYQIRVPKD--YEL-EVNKFCKLYLYEYASIMPNKNLIIKDLY 63

Query: 62  GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121
           GF +  +R  F+ L S+  +G + A+ +L       ++++I  ++   +A I G++ + A
Sbjct: 64  GFRTYNERLLFIDLISINSIGPKTAINILK-YDINLIIDAIATKDVDFLATIKGVNQRSA 122

Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181
           + I  +L  K I+                  +     +A      L NLGY +     A+
Sbjct: 123 NLICDQLNYKYIN-----------------KVSEKNPWAKELSIGLENLGYDKKDIEYAI 165

Query: 182 VSVLKKEKNIADDSQIIRLALRAIS 206
             V    +   D S+II  A++ IS
Sbjct: 166 TKVKVDTQQNIDISEIIGCAIKEIS 190


>gi|31544808|ref|NP_853386.1| Holliday junction ATP-dependent DNA helicase RuvA [Mycoplasma
           gallisepticum str. R(low)]
 gi|81572800|sp|Q7NAN2|RUVA_MYCGA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|31541654|gb|AAP56954.1| Holliday junction ATP-dependent DNA helicase ruvA [Mycoplasma
           gallisepticum str. R(low)]
 gi|284930882|gb|ADC30821.1| Holliday junction ATP-dependent DNA helicase ruvA [Mycoplasma
           gallisepticum str. R(high)]
          Length = 226

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 88/221 (39%), Gaps = 19/221 (8%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ--- 57
           MI  +   IE +    +L       Y +     +            L   T + Q+    
Sbjct: 1   MITSVYAKIEYVTNTKMLFVANNWGYWVNVKPNSGFSRTDNNVLVFLHELTFLAQNNAIN 60

Query: 58  IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
             L+ F S  +++WF  L ++ G+G + AM V+      E++  I   +   + ++  I+
Sbjct: 61  KELYAFKSLKEKEWFKALLTINGIGPKTAMNVMVNK-QEEVLTLIKNNDLNGLLRLENIN 119

Query: 118 MKIASRIMTE-------------LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI 164
            K+A+ ++               +  K      +   +    +K+      +    I AI
Sbjct: 120 KKVATMLLASDIASKHYLKNQIVVSDKVE--PQIDDDEKIDDSKDLNDDELLSEIVIEAI 177

Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
             L++LGY Q+Q  TA+  +  K ++I D + ++ + ++ I
Sbjct: 178 DCLISLGYKQEQIKTALAEIDLKNESINDSADLVAVIIKQI 218


>gi|72382108|ref|YP_291463.1| Holliday junction DNA helicase RuvA [Prochlorococcus marinus str.
           NATL2A]
 gi|90135557|sp|Q46L68|RUVA_PROMT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|72001958|gb|AAZ57760.1| Holliday junction DNA helicase subunit RuvA [Prochlorococcus
           marinus str. NATL2A]
          Length = 224

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 70/167 (41%), Gaps = 3/167 (1%)

Query: 26  YIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARV 85
           Y I    + +    ++ +   L++    R+D   L+GF+    R  F  + SV G+G ++
Sbjct: 30  YEIQLLPKQIDK-AEVLNEFELWIHQIDREDGTSLYGFIEVNQRDLFREIISVNGIGPQI 88

Query: 86  AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSC 145
            M +L      +LV +I  + S ++ +  GI  +IA R++ EL+ K    +         
Sbjct: 89  GMAMLEEFEVPQLVNAIENKESNLLTKTQGIGKRIAERLIVELRNKLQRFTDN--DKTIH 146

Query: 146 VNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIA 192
            NK          +       L +LGY  ++   ++  +   EK  +
Sbjct: 147 ENKNDIEANQFSKYIDEIYLILNSLGYVDNEIKESIKIITINEKENS 193


>gi|168700081|ref|ZP_02732358.1| probable holliday junction DNA helicase ruvA [Gemmata obscuriglobus
           UQM 2246]
          Length = 247

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 85/240 (35%), Gaps = 43/240 (17%)

Query: 1   MIGKIKGNIEGL--YEDYVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQ 57
           MI K+ G +      ED V + +    Y I  P      +  + G   T  +  ++  + 
Sbjct: 1   MITKMTGVLTRCRHDEDDVRLQIGPFEYQIMVPEAVRRQIQMRTGHELTFHITEYLEGNS 60

Query: 58  ------IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIA 111
                  R  GFL + + ++F L  +V+ +G + A+  ++  +   + ++I  Q++K ++
Sbjct: 61  SGNRFVPRRVGFLHEHELEFFELFCTVEKIGVKKALKAMA-FSVKTIADAISRQDAKWLS 119

Query: 112 QIPGISMKIASRIMTELKGKAISL---------------------------------SSV 138
            +PGI    A +I+T LK K                                     +  
Sbjct: 120 ALPGIGPTTAEQIVTTLKRKVTKFTVLNTPAPVAAPGAEPAPDAVVEEKPSGKKAKSAKK 179

Query: 139 VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQII 198
              +   +  E     +      +   AL+ LG    +A   + ++L   +      + I
Sbjct: 180 TAAEEPALATEPLVTAADGQLIEDVYQALMGLGLNPLEARAKLDALLTCGQPFRSLQEAI 239


>gi|124025644|ref|YP_001014760.1| putative holliday junction DNA helicase RuvA [Prochlorococcus
           marinus str. NATL1A]
 gi|166230583|sp|A2C1Y5|RUVA_PROM1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|123960712|gb|ABM75495.1| putative holliday junction DNA helicase RuvA [Prochlorococcus
           marinus str. NATL1A]
          Length = 224

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 71/167 (42%), Gaps = 3/167 (1%)

Query: 26  YIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARV 85
           Y I    + +    ++ +   L++    R+D   L+GF+    R  F  + SV G+G ++
Sbjct: 30  YEIQLLPKQIDK-AEVLNEFELWIHQIDREDGTSLYGFIEVNQRDLFREIISVNGIGPQI 88

Query: 86  AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSC 145
            M +L      +LV +I  + S ++ +  GI  +IA R++ EL+ K    +         
Sbjct: 89  GMAMLEEFEVPQLVNAIENKESNLLTKTQGIGKRIAERLIVELRNKLQRFTDN--DKTIH 146

Query: 146 VNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIA 192
            NK+         +       L +LGY  ++   ++  +   EK  +
Sbjct: 147 ENKKGIEANQFSKYIDEIYLILNSLGYVDNEIKESIKIITINEKENS 193


>gi|213421561|ref|ZP_03354627.1| Holliday junction DNA helicase motor protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 105

 Score = 77.8 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 3/106 (2%)

Query: 99  VESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS 158
           + ++  +    + ++PGI  K A R++ E+K +   L   +      +        +   
Sbjct: 1   MNAVEREELGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTPAVDLVLTSPASPTSED 60

Query: 159 FAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204
               A++ALV LGY   +A+  V  + +     A    +IR ALRA
Sbjct: 61  AEQEAVAALVALGYKPQEASRMVSKIAR---PDASSETLIRDALRA 103


>gi|323465932|gb|ADX69619.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus
           helveticus H10]
          Length = 140

 Score = 77.8 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 69/134 (51%), Gaps = 7/134 (5%)

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
           ++GF S+ D+  F+ L SV G+G + A+ +++   A  L E+I     K + + PG+  K
Sbjct: 1   MYGFQSEDDKGLFLKLLSVSGIGPKSALAIMAAEDANSLAEAIEQGEVKYLTRFPGVGKK 60

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
            AS+I+ +LKGK           ++ ++++     ++P    +A+ AL+ LGY Q +   
Sbjct: 61  TASQIVLDLKGKLRDY-------VARLDRQDEEQGNIPPALNDALLALIALGYTQKEVDR 113

Query: 180 AVVSVLKKEKNIAD 193
               + +   + AD
Sbjct: 114 ITPKLEEVNADTAD 127


>gi|260222298|emb|CBA31722.1| Holliday junction ATP-dependent DNA helicase ruvA [Curvibacter
           putative symbiont of Hydra magnipapillata]
          Length = 139

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 17/154 (11%)

Query: 53  MRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQ 112
           +R+D   L+GF +  +R+ F  L  + GVG R A+ VLS +   +L +++ LQ +  + +
Sbjct: 2   VREDAQILYGFATSTEREAFRELIKISGVGPRTALSVLSGMDVGDLAQAVTLQEAGRLIK 61

Query: 113 IPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172
           +PGI  K A R              +++          A + ++     + + AL+ LGY
Sbjct: 62  VPGIGKKTAER-------------LLLELKGKLGADLGAPLGAVGDAQSDILQALLALGY 108

Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
                     + LK        S  I+LAL++++
Sbjct: 109 S----EKEAAAALKALPKDVGVSDGIKLALKSLA 138


>gi|33322999|gb|AAQ07236.1|AF496544_1 holliday junction DNA helicase [Lactobacillus delbrueckii subsp.
          lactis]
          Length = 83

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 3/86 (3%)

Query: 1  MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
          M    +G I  +   YV+I+V G+ Y I  P        K GD   ++VE  +R++++ L
Sbjct: 1  MYEYFEGTITVVNPAYVVIEVAGIGYRILTPTPYAY---KNGDKARIYVEQVVRENRMTL 57

Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVA 86
          +GF S  D+  F  L  V G+G + A
Sbjct: 58 YGFKSQQDKVLFNKLNEVSGIGPKSA 83


>gi|113474071|ref|YP_720132.1| DNA recombination protein RuvA [Trichodesmium erythraeum IMS101]
 gi|110165119|gb|ABG49659.1| DNA recombination protein, RuvA [Trichodesmium erythraeum IMS101]
          Length = 109

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 6/96 (6%)

Query: 1  MIGKIKGNIEGLYEDY-----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55
          MI  +KG +  +Y+       V+++V  V Y +    R    L + G    +F    MR+
Sbjct: 1  MINYLKGKVANVYKGSGFRMTVILEVNQVGYELQVLPRLTQSLQE-GKQVQVFTHQQMRE 59

Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91
          DQ+ L+GF +  +R  F  L SV G+GA++A+ +L 
Sbjct: 60 DQMVLYGFGTSAERDLFRQLVSVSGIGAQLAIALLD 95


>gi|293363750|ref|ZP_06610492.1| putative Holliday junction DNA helicase RuvA [Mycoplasma
           alligatoris A21JP2]
 gi|292552671|gb|EFF41439.1| putative Holliday junction DNA helicase RuvA [Mycoplasma
           alligatoris A21JP2]
          Length = 201

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 76/200 (38%), Gaps = 16/200 (8%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ--DQIR 59
           I KI G I       ++++  G  + I    +      ++     L++            
Sbjct: 3   IYKI-GEIVYKKNKNIILESYGSGFWIQVANQERF---EVNSKVKLYLADIFSDFTKSFS 58

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119
            +GF   ++R  F  L +V G+GA++AM +L       + + I+  + + + ++  ++ K
Sbjct: 59  TYGFKDYMERVLFFDLINVNGIGAKIAMNILEN-GWQTVADLIVEGSVETLTKLNAVNEK 117

Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179
           IA  ++   + K + +        +  N                 ++L  LG+ + Q + 
Sbjct: 118 IAKNLILTYQDKWLKIRGAANSKETSKNTIN---------LNELGNSLKVLGFKEKQISY 168

Query: 180 AVVSVLKKEKNIADDSQIIR 199
           A+  +   +       Q I+
Sbjct: 169 ALSKIKVTDHLEDMVEQSIK 188


>gi|69250107|ref|ZP_00605099.1| RuvA, C-terminal [Enterococcus faecium DO]
 gi|68194009|gb|EAN08566.1| RuvA, C-terminal [Enterococcus faecium DO]
          Length = 125

 Score = 74.4 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 7/122 (5%)

Query: 84  RVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDM 143
           +V + +++    + L++++   +   + + PG+  K A +++ +LKGK   LS      +
Sbjct: 8   KVPLAIMASEDHSGLIQAVESSDVTYLTKFPGVGKKTAQQMILDLKGKFGELSIDTPFSL 67

Query: 144 SCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203
                         +    A+ AL  LGY   +       +  KE +     + +R AL+
Sbjct: 68  FDEAN-----TKDATALSEAMEALSALGYSDREIKRVEKQL--KEVDNQTTDEYLRQALK 120

Query: 204 AI 205
            +
Sbjct: 121 LM 122


>gi|83319351|ref|YP_424403.1| Holliday junction DNA helicase ruvA, putative [Mycoplasma
           capricolum subsp. capricolum ATCC 27343]
 gi|123767572|sp|Q2SS60|RUVA_MYCCT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|83283237|gb|ABC01169.1| Holliday junction DNA helicase ruvA, putative [Mycoplasma
           capricolum subsp. capricolum ATCC 27343]
          Length = 186

 Score = 74.4 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 77/206 (37%), Gaps = 24/206 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I G +  + + ++ +++  + Y        L    K+ +   +++  ++  +  + 
Sbjct: 1   MNDYINGFLYKIDDKFLYLELNYLGYRYLYLKSDLKNF-KLNENNKVYIAINVIDNHFKY 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + L R  F +L ++  +G + A  +L   +  EL++      +  I Q+ GI    
Sbjct: 60  YGFFNQLVRDLFEILININTIGEKTAFLILENYSYQELIDIFKNGKTDKILQLKGIGNYT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A  I+  ++ +  +                     +       I++L  LGY        
Sbjct: 120 ARLIINSVQKELFN-------------------NKISEKKNKVITSLEKLGYKTKDIYKI 160

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           +++V           ++ +  L  +S
Sbjct: 161 IINV----DEDLTIDELTKYVLEKLS 182


>gi|218508888|ref|ZP_03506766.1| Holliday junction DNA helicase RuvA [Rhizobium etli Brasil 5]
          Length = 55

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 43/55 (78%)

Query: 1  MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55
          MIGK+KG I+ + EDYVL+DV GVCY+ +C  RTLS LG  G+ C LF+ET++R+
Sbjct: 1  MIGKLKGTIDEIGEDYVLVDVHGVCYVAHCSARTLSKLGSAGEACVLFIETYVRE 55


>gi|313665319|ref|YP_004047190.1| Holliday junction DNA helicase RuvA [Mycoplasma leachii PG50]
 gi|312949212|gb|ADR23808.1| putative Holliday junction DNA helicase RuvA [Mycoplasma leachii
           PG50]
          Length = 186

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 78/206 (37%), Gaps = 24/206 (11%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M   I   +  + + ++ +++  + Y      R L    K+ +   +++ T++  +  + 
Sbjct: 1   MNDYINAFLHKIDDKFLYLELNNLGYRYLYLKRDLKNF-KLSENNKIYIATNVIDNLFKC 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF + L R  F +L ++  +G + A  +L   +  EL++      +  I Q+ GI    
Sbjct: 60  YGFYNQLVRDLFEILININTIGEKTAFLILENYSYEELIDIFKNAKTDKILQLKGIGSYT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A  I+  ++ +  +                     +       I++L  LGY        
Sbjct: 120 ARLIINSVQKELFN-------------------NKISEKKNKVITSLEKLGYKTKDIYKI 160

Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206
           ++++           ++ +  L  +S
Sbjct: 161 IINI----DEDLTIDELTKYVLEKLS 182


>gi|224540665|ref|ZP_03681204.1| hypothetical protein BACCELL_05579 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224517737|gb|EEF86842.1| hypothetical protein BACCELL_05579 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 115

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 63/118 (53%), Gaps = 3/118 (2%)

Query: 88  GVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVN 147
            +LS ++  ELV  I  +N+ ++  + GI +K A R++ +LK K  + ++     +  + 
Sbjct: 1   MILSALSPAELVNVISTENANLLKTVKGIGLKTAQRVIVDLKDKIKTGAASAGSTIGSLG 60

Query: 148 KEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
              +   +       AI+AL  LG+ Q  +   V+++LK+E + A   Q+I+LAL+ +
Sbjct: 61  GMLS--AANAQVQEEAIAALTMLGFAQAPSQKVVLAILKEEPD-APVEQVIKLALKRL 115


>gi|206895983|ref|YP_002247234.1| holliday junction ATP-dependent DNA helicase RuvA, putative
           [Coprothermobacter proteolyticus DSM 5265]
 gi|206738600|gb|ACI17678.1| holliday junction ATP-dependent DNA helicase RuvA, putative
           [Coprothermobacter proteolyticus DSM 5265]
          Length = 182

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 64/161 (39%), Gaps = 23/161 (14%)

Query: 48  FVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNS 107
           ++      + IR+F F +  +   F +L++V+GVG   A  +LS     +L+  I   + 
Sbjct: 40  YLFFVSFDNDIRVFVFSNKEEFGLFQVLKNVKGVGNIKASRILSLYDVQQLLNMIKAGDE 99

Query: 108 KVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISAL 167
             +A +PGI  + A RI+ EL G+          D                  +  ++A 
Sbjct: 100 HELALLPGIGERTAKRIVAELSGRLTHTRHDFDND-----------------FMEVVNAA 142

Query: 168 VNLGYGQDQATTAVVSVLKKEKN--IADDSQIIRLALRAIS 206
            +LGY ++     V  +L              +R  +R ++
Sbjct: 143 CDLGYERN----VVTELLNGSSEWRDKTLEDALRWVIRELN 179


>gi|254775923|ref|ZP_05217439.1| Holliday junction DNA helicase RuvA [Mycobacterium avium subsp.
          avium ATCC 25291]
          Length = 68

 Score = 69.0 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 1  MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
          MI  ++G +  +  D+ +I+  GV Y +     TLS L + G    L     +R+D + L
Sbjct: 1  MIASVRGEVLEVALDHAVIEAAGVGYRVNATPSTLSTL-RTGTQARLITAMIVREDSMTL 59

Query: 61 FGFLSDL 67
          +GF    
Sbjct: 60 YGFTDAE 66


>gi|254994714|ref|ZP_05276904.1| Holliday junction DNA helicase (ruvA) [Anaplasma marginale str.
           Mississippi]
          Length = 138

 Score = 69.0 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 64/153 (41%), Gaps = 18/153 (11%)

Query: 54  RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113
           R    +L+GF +  ++    +L  V GV  + AM +L  +T  ++  +I+ ++   +   
Sbjct: 3   RDGVSQLYGFANREEQNCMRMLIKVSGVNYKTAMAILDVLTPEQVFSAIVSEDRAALKVG 62

Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173
            G+  K+ SRI++EL  +            +  +               A++AL++LGY 
Sbjct: 63  -GVGEKLISRIISELTPQVQKFELNRFAATTRTDS-------------EAVAALLSLGYE 108

Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           +  A  A+  V             +R AL  +S
Sbjct: 109 RTAALGALQKV----GVCDSTEDAVRRALLELS 137


>gi|213022656|ref|ZP_03337103.1| Holliday junction DNA helicase motor protein [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 87

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 3/88 (3%)

Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176
             K A R++ E+K +       +      +        +       A++ALV LGY   +
Sbjct: 1   GKKTAERLIVEMKDRFKGPHGDLFTPAVDLVLTSPASPTSEDAEQEAVAALVALGYKPQE 60

Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRA 204
           A+  V  + +     A    +IR ALRA
Sbjct: 61  ASRMVSKIAR---PDASSETLIRDALRA 85


>gi|308189841|ref|YP_003922772.1| hypothetical protein MFE_02810 [Mycoplasma fermentans JER]
 gi|307624583|gb|ADN68888.1| hypothetical protein MFE_02810 [Mycoplasma fermentans JER]
          Length = 145

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 4/134 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+   KG I       ++ +   V Y +  P      L        +++          L
Sbjct: 1   MVLYRKGKIVYKDGKNLIFESNNVGYYVMFPDNKRIKL---NQELKMYLYEIKNDFTWSL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L ++ G+G RVA  VL+     + +  I   N + IA+I  I+ ++
Sbjct: 58  YGFKELEERKLFADLVNLNGIGPRVAFNVLNV-GFDKAINLIRDGNIEEIAKIEYINPRL 116

Query: 121 ASRIMTELKGKAIS 134
           A  I+ ELK K  S
Sbjct: 117 ARIIVEELKEKLSS 130


>gi|325973630|ref|YP_004250694.1| holliday junction ATP-dependent DNA helicase, RuvA [Mycoplasma suis
           str. Illinois]
 gi|325990082|ref|YP_004249781.1| Holliday junction ATP-dependent DNA helicase RuvA [Mycoplasma suis
           KI3806]
 gi|323575167|emb|CBZ40829.1| Holliday junction ATP-dependent DNA helicase RuvA [Mycoplasma suis]
 gi|323652232|gb|ADX98314.1| holliday junction ATP-dependent DNA helicase, RuvA [Mycoplasma suis
           str. Illinois]
          Length = 206

 Score = 66.3 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 91/210 (43%), Gaps = 13/210 (6%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQI-- 58
           M   +K  I  ++++Y++ +  G  Y I     T S   +      +F E  +       
Sbjct: 1   MY-YLKCQIISVHKNYLIAESNGKGYKINF-ADTYSIKEQEEHLIYVFREFKLDTKNQIT 58

Query: 59  -RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117
            +LFGFLS+ + + F  L +++G+G + A  +L+      +      +    +A++ G +
Sbjct: 59  SQLFGFLSEKEFELFNSLLAIKGIGCKTAQAILTN-DWNMMYFLAEREERLKLAELRGFN 117

Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177
           +KIA+  +  +K      +    ++    +   ++  S        IS+L+ +GY  D  
Sbjct: 118 LKIANLFIYSIK------NMKSLKNSFNKHSSSSYSDSKECKEKEVISSLIKIGYKFDDI 171

Query: 178 TTAVVSVLKKEKNIA-DDSQIIRLALRAIS 206
             A+  + + +  +  D + +I   L+ IS
Sbjct: 172 KRALDIIRESDTELKNDFNSLINECLKTIS 201


>gi|331668555|ref|ZP_08369403.1| holliday junction ATP-dependent DNA helicase RuvA [Escherichia coli
           TA271]
 gi|331063749|gb|EGI35660.1| holliday junction ATP-dependent DNA helicase RuvA [Escherichia coli
           TA271]
          Length = 80

 Score = 65.1 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 3/81 (3%)

Query: 124 IMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVS 183
           ++ E+K +   L   +    + +        +       A++ALV LGY   +A+  V  
Sbjct: 1   MIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRMVSK 60

Query: 184 VLKKEKNIADDSQIIRLALRA 204
           + +     A    +IR ALRA
Sbjct: 61  IAR---PDASSETLIREALRA 78


>gi|330936718|gb|EGH40905.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 83

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 4/85 (4%)

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELK +  +  S +    + V+        + S   +A+SAL++LGY   +A+ A
Sbjct: 2   AERLLVELKDRFKAWES-LPGTFTLVSNGPNQAEPVASAESDAVSALISLGYKPQEASKA 60

Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205
           V ++ +K+ + AD   +IR AL+ +
Sbjct: 61  VSAIKEKDLSSAD---LIRRALKGM 82


>gi|113474072|ref|YP_720133.1| Holliday junction DNA helicase RuvA [Trichodesmium erythraeum
           IMS101]
 gi|110165120|gb|ABG49660.1| Holliday junction DNA helicase RuvA [Trichodesmium erythraeum
           IMS101]
          Length = 119

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 8/120 (6%)

Query: 89  VLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNK 148
           +LS     +LV++I+  N++V+A+ PG+  K A RI  ELK K            S    
Sbjct: 1   MLSLTELPDLVQAIVGGNTRVLAKTPGVGAKTAERITLELKNKLAEWRQDAGLTTS---- 56

Query: 149 EQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADD--SQIIRLALRAIS 206
               +  MP+        L+ LGY   +   ++ +V K      +      IR A+  +S
Sbjct: 57  --VPVGVMPAIQEEVEMTLLALGYTGQEVIQSLQAVSKDANMSKNTNAEDWIREAISWLS 114


>gi|319776838|ref|YP_004136489.1| holliday junction ATP-dependent DNA helicase ruva [Mycoplasma
           fermentans M64]
 gi|318037913|gb|ADV34112.1| Holliday junction ATP-dependent DNA helicase RuvA [Mycoplasma
           fermentans M64]
          Length = 145

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 4/134 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+   KG I       ++ +   V Y +  P      L        + +          L
Sbjct: 1   MVLYRKGKIVYKDGKNLIFESDNVGYYVTFPDNKRIKL---NQELKMCLYEIKNDFTWSL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L ++ G+G RVA  VL+     + +  I   N + IA+I  I+ +I
Sbjct: 58  YGFKELEERKLFADLLNLNGIGPRVAFNVLNV-GFDKAINLIRDGNIEEIAKIEYINPRI 116

Query: 121 ASRIMTELKGKAIS 134
           A  I+ ELK K  S
Sbjct: 117 ARIIVEELKEKLSS 130


>gi|319776965|ref|YP_004136616.1| holliday junction ATP-dependent DNA helicase ruva [Mycoplasma
           fermentans M64]
 gi|319777203|ref|YP_004136854.1| holliday junction ATP-dependent DNA helicase ruva [Mycoplasma
           fermentans M64]
 gi|318038040|gb|ADV34239.1| Holliday junction ATP-dependent DNA helicase RuvA [Mycoplasma
           fermentans M64]
 gi|318038278|gb|ADV34477.1| Holliday junction ATP-dependent DNA helicase RuvA [Mycoplasma
           fermentans M64]
          Length = 145

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 4/134 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+   KG I       ++ +   V Y +  P        K+     + +          L
Sbjct: 1   MVLYRKGKIVYKDGKNLIFESDNVGYYVTFPDN---KSIKLNQELKMCLYEIKNDFTWSL 57

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L ++ G+G RVA  VL+     + +  I   N + IA+I  I+ +I
Sbjct: 58  YGFKELEERKLFADLLNLNGIGPRVAFNVLNV-GFDKAINLIRDGNIEEIAKIEYINPRI 116

Query: 121 ASRIMTELKGKAIS 134
           A  I+ ELK K  S
Sbjct: 117 ARIIVEELKEKLSS 130


>gi|312969901|ref|ZP_07784084.1| holliday junction ATP-dependent DNA helicase ruvA [Escherichia coli
           1827-70]
 gi|310338186|gb|EFQ03275.1| holliday junction ATP-dependent DNA helicase ruvA [Escherichia coli
           1827-70]
          Length = 76

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 3/77 (3%)

Query: 128 LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKK 187
           +K +   L   +    + +        +       A++ALV LGY   +A+  V  + + 
Sbjct: 1   MKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRMVSKIAR- 59

Query: 188 EKNIADDSQIIRLALRA 204
               A    +IR ALRA
Sbjct: 60  --PDASSETLIREALRA 74


>gi|238809746|dbj|BAH69536.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 154

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 4/134 (2%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           M+   KG I       ++ +   V Y +  P      L        + +          L
Sbjct: 10  MVLYRKGKIVYKDGKNLIFESDNVGYYVTFPDNKRIKL---NQELKMCLYEIKNDFTWSL 66

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           +GF    +R+ F  L ++ G+G RVA  VL+     + +  I   N + IA+I  I+ +I
Sbjct: 67  YGFKELEERKLFADLLNLNGIGPRVAFNVLNV-GFDKAINLIRDGNIEEIAKIEYINPRI 125

Query: 121 ASRIMTELKGKAIS 134
           A  I+ ELK K  S
Sbjct: 126 ARIIVEELKEKLSS 139


>gi|332756761|gb|EGJ87108.1| ruvA, C-terminal domain protein [Shigella flexneri 4343-70]
          Length = 76

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 3/77 (3%)

Query: 128 LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKK 187
           +K +   L   +    + +        +       A++ALV LGY   +A+  V  + + 
Sbjct: 1   MKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRMVSKIAR- 59

Query: 188 EKNIADDSQIIRLALRA 204
                    +IR ALRA
Sbjct: 60  --PDTSSETLIREALRA 74


>gi|323165016|gb|EFZ50806.1| ruvA, C-terminal domain protein [Shigella sonnei 53G]
          Length = 76

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 3/77 (3%)

Query: 128 LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKK 187
           +K +   L   +    + +        +       A++ALV LGY   +A+  V  + + 
Sbjct: 1   MKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRMVSKIART 60

Query: 188 EKNIADDSQIIRLALRA 204
           +   A    +IR ALRA
Sbjct: 61  D---ASSETLIREALRA 74


>gi|50365239|ref|YP_053664.1| holliday junction DNA helicase ruvA [Mesoplasma florum L1]
 gi|50363795|gb|AAT75780.1| holliday junction DNA helicase ruvA [Mesoplasma florum L1]
          Length = 182

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 72/199 (36%), Gaps = 28/199 (14%)

Query: 9   IEGLYEDYVLIDVQGVC-YIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDL 67
           I    ++Y+ ++ Q    Y  Y          K      LF+  H  + +     F S  
Sbjct: 9   INSKDDNYLYVEYQNKGEYFSYLTKDNF----KNEKNIKLFIVDHNTEFENVEIVFRSRD 64

Query: 68  DRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTE 127
           +R  F  L  ++ VG + +  +L+  +  E ++ I   + + +A++ GI    A  I+ E
Sbjct: 65  ERNLFKELVKIKTVGLKTSFYLLNNFSFEEFIKMIEEYDIEKLAKLKGIGNYTAKLIIEE 124

Query: 128 LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKK 187
           L+                          +       I++LV LG+        + +V   
Sbjct: 125 LQKHFFK-------------------NKITQKKEKIITSLVKLGFSYKTIMKNIANV--- 162

Query: 188 EKNIADDSQIIRLALRAIS 206
             N+    +I ++ +  IS
Sbjct: 163 -DNLLSVDEITKIVMEQIS 180


>gi|207110462|ref|ZP_03244624.1| Holliday junction DNA helicase motor protein [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 102

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 47/124 (37%), Gaps = 23/124 (18%)

Query: 82  GARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQ 141
           G R+A+ +LS  +  E    I  +  K + Q+PGI  K+A +IM +L G  I        
Sbjct: 1   GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQ------- 53

Query: 142 DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLA 201
                                   AL +LG+   +    +  VLK  K        I+ A
Sbjct: 54  ------------DENKPARNEVFLALESLGFKSAE----INKVLKTLKPHLSIEAAIKEA 97

Query: 202 LRAI 205
           L+ +
Sbjct: 98  LQQL 101


>gi|53987370|gb|AAV27571.1| branch migration of holliday structures; repair [Mycoplasma
           hyopneumoniae 232]
          Length = 154

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 60/152 (39%), Gaps = 21/152 (13%)

Query: 71  WFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130
            F  L S+QGVG + A+  L+      L+  I   + K +A+IP +S K A +I+ E + 
Sbjct: 1   MFEDLISIQGVGPKTAISALNS-GMQNLINLIAANDWKTLAKIPYLSEKNAKQIVFEFQK 59

Query: 131 KAISLSSVVQQDMSCVNKEQ-----------AHICSMPSFAINAISA-----LVNLGYGQ 174
           K    +   +      N E            A I    S   +  +A     L  LG+  
Sbjct: 60  KYERFNENHKNQTEETNPETQEKELEKEDDLADITIQKSNLEDKTAANLEDTLKMLGFKP 119

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
            Q   A+  V   E    +   +I  A++ IS
Sbjct: 120 RQIDYALTKVEPNE----NFENLIENAIKIIS 147


>gi|308187173|ref|YP_003931304.1| hypothetical protein Pvag_1667 [Pantoea vagans C9-1]
 gi|308057683|gb|ADO09855.1| hypothetical protein Pvag_1667 [Pantoea vagans C9-1]
          Length = 36

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 1  MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTL 35
          MIG+++GNI       VL++  GV Y IY P+   
Sbjct: 1  MIGRLRGNILEKQPPLVLLEAHGVGYEIYMPMTCF 35


>gi|2160258|dbj|BAA01034.1| RuvA [Escherichia coli]
          Length = 29

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 1  MIGKIKGNIEGLYEDYVLIDVQGVCYIIY 29
          MIG+++G I       VLI+V GV Y ++
Sbjct: 1  MIGRLRGIIIEKQPPLVLIEVGGVGYEVH 29


>gi|2078399|gb|AAB54026.1| unknown [Mycobacterium tuberculosis]
          Length = 94

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 17/32 (53%)

Query: 1  MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPI 32
          MI  ++G +  +  D+V+I+  GV Y +    
Sbjct: 6  MIASVRGEVLEVALDHVVIEAAGVGYRVNATP 37


>gi|145628662|ref|ZP_01784462.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae 22.1-21]
 gi|144979132|gb|EDJ88818.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae 22.1-21]
          Length = 81

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 124 IMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVV 182
           ++ ELKGK   +  S    + + +    +      S +  AISAL+ LGY   +A   V 
Sbjct: 1   MLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESSSDEAISALIALGYKPAEAEKMVK 60

Query: 183 SVLKKEKNIADDSQIIRLALRA 204
            V K E       Q+IR AL+A
Sbjct: 61  RVAKPE---LTSEQVIREALKA 79


>gi|330896129|gb|EGH28350.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 43

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 31/45 (68%), Gaps = 3/45 (6%)

Query: 161 INAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
            +A+SAL++LGY   +A+ AV ++ +K+ + AD   +IR AL+ +
Sbjct: 1   SDAVSALISLGYKPQEASKAVSAIKEKDLSSAD---LIRRALKGM 42


>gi|24987362|pdb|1IXS|A Chain A, Structure Of Ruvb Complexed With Ruva Domain Iii
          Length = 62

 Score = 48.9 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 151 AHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           A        A  A+ AL  LG+ + QA   V+ +L +    A    +I+ AL+ +
Sbjct: 8   AGEKVESEAAEEAVMALAALGFKEAQARAVVLDLLAQNPK-ARAQDLIKEALKRL 61


>gi|255030452|ref|ZP_05302403.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes LO28]
          Length = 36

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 1  MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSC 37
          M   IKG +  +  +Y++++   + Y I       S 
Sbjct: 1  MYDYIKGTVTTITPEYIVVEAGQIGYQI-ITGNPFSF 36


>gi|291533988|emb|CBL07101.1| RuvA, C-terminal domain [Megamonas hypermegale ART12/1]
          Length = 51

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)

Query: 158 SFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
                A  AL++LGY + +    + SVLKK  N+ +   II+ AL+ +S
Sbjct: 5   DMYEEATQALLSLGYTKPE----INSVLKKAGNMTNTEDIIKFALKELS 49


>gi|205374297|ref|ZP_03227096.1| hypothetical protein Bcoam_14304 [Bacillus coahuilensis m4-4]
          Length = 55

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 2  IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDF 44
             IKG +E +  +YV+++   + Y +Y P    S        
Sbjct: 14 YEYIKGTVEFIGPEYVVVEAGDIGYQLYTP-NPFSFSPHEKSH 55


>gi|328471586|gb|EGF42464.1| Holliday junction DNA helicase RuvA [Lactobacillus rhamnosus MTCC
           5462]
          Length = 114

 Score = 47.0 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 7/121 (5%)

Query: 73  MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132
             L SV G+G + A+ +L+ +++  L  +I   + K + + PGI  K A++I+ +LKGK 
Sbjct: 1   NQLLSVTGIGPKSALAILANVSSGGLATAIAQDDVKFLTKFPGIGKKTAAQIILDLKGKI 60

Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIA 192
            + +      +     + A   +    A+ A+      GY Q  A   +   LK      
Sbjct: 61  TTDAQPAAATIMPTADQVAPELADALAALVAL------GYTQR-AVDGITDALKAFDATT 113

Query: 193 D 193
            
Sbjct: 114 T 114


>gi|293395809|ref|ZP_06640091.1| crossover junction endoribonuclease subunit A [Serratia odorifera
           DSM 4582]
 gi|291421746|gb|EFE94993.1| crossover junction endoribonuclease subunit A [Serratia odorifera
           DSM 4582]
          Length = 77

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 4/78 (5%)

Query: 128 LKGKAISLSSVVQQDMSCVN-KEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLK 186
           +K +   L+  +  + S ++    A           A SALV LGY   +A+  V  + K
Sbjct: 1   MKDRFKGLNGDLFNNSSEISLPASATQTPEADAEAEAASALVALGYKPQEASRMVSKIAK 60

Query: 187 KEKNIADDSQIIRLALRA 204
                AD   +IR ALRA
Sbjct: 61  ---PGADCETLIRDALRA 75


>gi|255027600|ref|ZP_05299586.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes FSL
           J2-003]
          Length = 60

 Score = 44.7 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 146 VNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           V  E   +  +      A+ AL  LGY   +    +  + K+          I+LAL+ +
Sbjct: 1   VAPENDMVAGLSPQLEEAVLALEALGYSTRELKKVIPKLAKEA--DLTSDAYIKLALQLM 58


>gi|169836512|ref|ZP_02869700.1| Holliday junction DNA helicase RuvA [candidate division TM7
           single-cell isolate TM7a]
          Length = 76

 Score = 44.7 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 42/71 (59%)

Query: 46  TLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQ 105
            +   T++++D I L+GF +  +R+ F  L S+ GVG ++A+ +LS     E++E +   
Sbjct: 5   KIIYFTNVKEDDISLYGFKTQNERELFKALISISGVGPKLAIAILSTFNMREIIEIVTED 64

Query: 106 NSKVIAQIPGI 116
            SK++ +  G+
Sbjct: 65  ESKILQEFQGL 75


>gi|255030240|ref|ZP_05302191.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes LO28]
          Length = 85

 Score = 44.7 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 40/83 (48%)

Query: 72  FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131
           F  L SV G+G + A+ +++      L+ +I  ++   + + P +  K A +I+ +LKGK
Sbjct: 1   FKKLLSVSGIGPKSALAIIASGDVVPLISAIESEDDVYLTKFPSVGKKTARQIILDLKGK 60

Query: 132 AISLSSVVQQDMSCVNKEQAHIC 154
              + +     ++  N   A + 
Sbjct: 61  LADVVASEIVYVAPENDMVAGLS 83


>gi|289808763|ref|ZP_06539392.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 36

 Score = 43.2 bits (100), Expect = 0.021,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 161 INAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIR 199
             A++ALV LGY   +A+  V  + +     A    +IR
Sbjct: 1   QEAVAALVALGYKPQEASRMVSKIAR---PDASSETLIR 36


>gi|160876640|ref|YP_001555956.1| RuvA domain-containing protein [Shewanella baltica OS195]
 gi|160862162|gb|ABX50696.1| RuvA domain protein [Shewanella baltica OS195]
 gi|315268839|gb|ADT95692.1| RuvA domain protein [Shewanella baltica OS678]
          Length = 307

 Score = 41.6 bits (96), Expect = 0.063,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 152 HICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
            I        +AI AL++LGY   +A   V   LK+        +II+ A+ ++
Sbjct: 255 SIIDFKETQNDAIHALISLGYSSSKAKEVV---LKQSNQRLTAEEIIKKAIISL 305


>gi|254775922|ref|ZP_05217438.1| Holliday junction DNA helicase RuvA [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 47

 Score = 41.6 bits (96), Expect = 0.072,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 163 AISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
            + ALV LG+   QA  A   VL  E   A  S  +R AL  +
Sbjct: 2   VVEALVGLGFAAKQAEEATDKVLAAEPE-AGTSGALRAALSLL 43


>gi|289579052|ref|YP_003477679.1| Tn7-like transposition protein C [Thermoanaerobacter italicus Ab9]
 gi|289528765|gb|ADD03117.1| Tn7-like transposition protein C [Thermoanaerobacter italicus Ab9]
          Length = 553

 Score = 40.9 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 27/57 (47%)

Query: 150 QAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           +    ++ S    AI  L+ L     +A  AV  V++ E    D S+++  A++ +S
Sbjct: 440 EEEKEALLSIKEQAIIKLLELNIEAKKAQKAVEQVIEAEGEKIDVSELVVKAIKLLS 496


>gi|297205884|ref|ZP_06923279.1| S1 RNA binding domain protein [Lactobacillus jensenii JV-V16]
 gi|297149010|gb|EFH29308.1| S1 RNA binding domain protein [Lactobacillus jensenii JV-V16]
          Length = 292

 Score = 39.7 bits (91), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 1  MIGKI-KGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE 50
          M+G I KG +    ++   + V GV Y +     T   + ++GD    F+ 
Sbjct: 1  MLGTIQKGKVIDKNDEAYYVQVNGVTYELNKLEVTQEQMPQLGDIVQGFIY 51


>gi|293384504|ref|ZP_06630375.1| holliday junction DNA helicase RuvA [Enterococcus faecalis R712]
 gi|291078160|gb|EFE15524.1| holliday junction DNA helicase RuvA [Enterococcus faecalis R712]
          Length = 59

 Score = 38.9 bits (89), Expect = 0.42,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 153 ICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           + +       A+ AL  LGY   +       +    +   D    +  AL+ +
Sbjct: 6   VTTSNQALAEALEALSALGYSDREIKRITKQLEALGETTTDV--YLSNALKFM 56


>gi|269793189|ref|YP_003318093.1| methyl-accepting chemotaxis sensory transducer [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100824|gb|ACZ19811.1| methyl-accepting chemotaxis sensory transducer [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 433

 Score = 38.9 bits (89), Expect = 0.46,   Method: Composition-based stats.
 Identities = 10/75 (13%), Positives = 33/75 (44%)

Query: 132 AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNI 191
             S+++  ++  +   +    I       +  +S L  + +  ++   A  SV ++ + +
Sbjct: 343 MESVAATSEEQAAASQEIAKSIDEAARSTVEVVSGLGVIQHSAEETAKAAESVAREAEKL 402

Query: 192 ADDSQIIRLALRAIS 206
              ++ ++ AL++ S
Sbjct: 403 TSGAEALKEALKSFS 417


>gi|293389009|ref|ZP_06633491.1| holliday junction DNA helicase RuvA [Enterococcus faecalis S613]
 gi|291081628|gb|EFE18591.1| holliday junction DNA helicase RuvA [Enterococcus faecalis S613]
          Length = 59

 Score = 38.5 bits (88), Expect = 0.49,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 153 ICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           + +       A+ AL  LGY   +       +    +   D    +  AL+ +
Sbjct: 6   VTTSNQALAEALEALSALGYSDREIKRITKQLEALGETTTDV--YLSNALKFM 56


>gi|307718783|ref|YP_003874315.1| 30S ribosomal protein S1 [Spirochaeta thermophila DSM 6192]
 gi|306532508|gb|ADN02042.1| 30S ribosomal protein S1 [Spirochaeta thermophila DSM 6192]
          Length = 800

 Score = 38.5 bits (88), Expect = 0.53,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 5/47 (10%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFV 49
           ++G +  + +DYV +D   V Y      PI     L K+GD   + +
Sbjct: 265 VEGTVIEINKDYVYLD---VGYKSEGQVPISDFDTLPKVGDTVPVVI 308


>gi|315185614|gb|EFU19382.1| cytidylate kinase [Spirochaeta thermophila DSM 6578]
          Length = 800

 Score = 38.5 bits (88), Expect = 0.55,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 5/47 (10%)

Query: 5   IKGNIEGLYEDYVLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFV 49
           ++G +  + +DYV +D   V Y      PI     L K+GD   + +
Sbjct: 265 VEGTVIEINKDYVYLD---VGYKSEGQVPISDFDTLPKVGDTVPVVI 308


>gi|256851001|ref|ZP_05556390.1| RNA-binding protein [Lactobacillus jensenii 27-2-CHN]
 gi|260661213|ref|ZP_05862127.1| RNA-binding protein [Lactobacillus jensenii 115-3-CHN]
 gi|282932046|ref|ZP_06337504.1| conserved virulence factor B [Lactobacillus jensenii 208-1]
 gi|256616063|gb|EEU21251.1| RNA-binding protein [Lactobacillus jensenii 27-2-CHN]
 gi|260548150|gb|EEX24126.1| RNA-binding protein [Lactobacillus jensenii 115-3-CHN]
 gi|281303813|gb|EFA95957.1| conserved virulence factor B [Lactobacillus jensenii 208-1]
          Length = 292

 Score = 38.5 bits (88), Expect = 0.57,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 1  MIGKIK-GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE 50
          M+G I+ G +    ++   + V GV Y +     T   + ++GD    F+ 
Sbjct: 1  MLGTIQEGKVIDKNDEAYYVQVNGVTYELNKLEVTQEQMPQLGDIVQGFIY 51


>gi|288574755|ref|ZP_06393112.1| two component transcriptional regulator, winged helix family
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570496|gb|EFC92053.1| two component transcriptional regulator, winged helix family
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 230

 Score = 38.5 bits (88), Expect = 0.62,   Method: Composition-based stats.
 Identities = 7/30 (23%), Positives = 15/30 (50%)

Query: 2   IGKIKGNIEGLYEDYVLIDVQGVCYIIYCP 31
           I  ++  +     D +++ V+GV Y + C 
Sbjct: 198 IKYLRDKLREHKMDSIVVTVRGVGYKVQCS 227


>gi|207110212|ref|ZP_03244374.1| Holliday junction DNA helicase motor protein [Helicobacter pylori
          HPKX_438_CA4C1]
          Length = 77

 Score = 38.5 bits (88), Expect = 0.62,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)

Query: 1  MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
          MI  + G +E +    V I+VQGV Y +   +RT S L + G    L +   +R+D   L
Sbjct: 1  MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMRT-SALLEAGQKVRLKILQVIREDAHLL 59

Query: 61 FGFLSDLDRQWFMLLQSV 78
          +GFL + ++  F  L  +
Sbjct: 60 YGFLEESEKILFERLLKI 77


>gi|157874437|ref|XP_001685702.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68128774|emb|CAJ08907.1| putative enolase [Leishmania major strain Friedlin]
          Length = 608

 Score = 38.2 bits (87), Expect = 0.63,   Method: Composition-based stats.
 Identities = 17/154 (11%), Positives = 47/154 (30%), Gaps = 4/154 (2%)

Query: 46  TLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQ 105
              V   + +             + +F      + V    ++  L             + 
Sbjct: 13  EFHVSGVLTEAARACVSAHPTDVKDFFSRY--FREVAGGTSVKALHHNEVLSAAGETAIT 70

Query: 106 NSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS 165
            +  +   P +S+     + +  +G+     + +       + E     ++ +    A+S
Sbjct: 71  FTMELCVGPEVSVTTGDLLASADRGRDGEARASLAASEGATDAEGNSYSAIQTTCAAAVS 130

Query: 166 ALVNLGYGQD--QATTAVVSVLKKEKNIADDSQI 197
            L+ LGY +   +  +A+ + L         S +
Sbjct: 131 KLLQLGYAEPQHEWDSALRAALSTSPLANGTSAL 164


>gi|312136000|ref|YP_004003338.1| tn7-like transposition protein c [Caldicellulosiruptor owensensis
           OL]
 gi|311776051|gb|ADQ05538.1| Tn7-like transposition protein C [Caldicellulosiruptor owensensis
           OL]
          Length = 553

 Score = 38.2 bits (87), Expect = 0.71,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 26/52 (50%)

Query: 155 SMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
           +  S    AI  L+ L     +A  AV  V++ E   ++ S+++  A++ +S
Sbjct: 445 AALSVKEQAIIKLLELNIEAKKAQKAVEQVIEAEGEKSNVSELVVKAIQLLS 496


>gi|322494469|emb|CBZ29771.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 608

 Score = 38.2 bits (87), Expect = 0.74,   Method: Composition-based stats.
 Identities = 17/163 (10%), Positives = 51/163 (31%), Gaps = 5/163 (3%)

Query: 46  TLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQ 105
              +   + +             + +F      + V    ++  L             + 
Sbjct: 13  EFHISGILTEAARACVSAHPTDVKDFFSRY--FREVAEGTSVKALHHNEVLSAAGETAVT 70

Query: 106 NSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS 165
            +  +   P +S+     +    +G+   + + +       + E      + +     +S
Sbjct: 71  FTVELCVGPEVSVTTGDLLSFADRGRDGEVRASLAASEGATDAEGNSYSVIQTTCAAVVS 130

Query: 166 ALVNLGY--GQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
            L+ LGY   Q +  +A+ + L     +A  +  ++  L  ++
Sbjct: 131 KLLQLGYAEPQREWDSALRTALSPSP-LASGASALQWVLSIMA 172


>gi|169335926|ref|ZP_02863119.1| hypothetical protein ANASTE_02361 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258664|gb|EDS72630.1| hypothetical protein ANASTE_02361 [Anaerofustis stercorihominis DSM
           17244]
          Length = 256

 Score = 38.2 bits (87), Expect = 0.81,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 54/174 (31%), Gaps = 21/174 (12%)

Query: 52  HMRQDQIRLFGFLSDLDRQWF-----MLLQSVQGVGARVAMGVLSRITATELVESIILQN 106
           +   D+ +     S  +   F       L S                T  +    +    
Sbjct: 53  YSTSDRFKCGLTYSSHEETHFPDNFNNKLLSYNDT-VENEYDESPICTFGDQGPCVYKDR 111

Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKE------QAHICSMPSFA 160
              I  I G+  ++ + + ++  GK      ++ +  + +         Q       +  
Sbjct: 112 YLTIVPINGLGERMGTLLFSKYGGKFNDDEIILCEYSAAIVVMELLRYVQDQRKKNDADV 171

Query: 161 INAISALVNLGYGQDQATTAVVSVLKKEK-----NIADDSQIIRL----ALRAI 205
             A  AL  L Y + +A   +   +K E       IA ++QI R     ALR +
Sbjct: 172 AAAKMALSTLSYSEVEAVRMIFKEVKDEGLVVASKIATEAQITRSVVSNALRKL 225


>gi|307266062|ref|ZP_07547608.1| Tn7-like transposition protein C [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306918931|gb|EFN49159.1| Tn7-like transposition protein C [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 554

 Score = 37.8 bits (86), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%)

Query: 147 NKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
            +++    +  S    AI+ L+ L     +A  AV  V++ E    D S++   A++ +S
Sbjct: 438 QRQEEEKKASLSIKEQAITKLLELNIEAKKAQKAVEQVMEAEGEKIDVSELAVKAIQLLS 497


>gi|254500672|ref|ZP_05112823.1| Glycosyl hydrolase family 9 [Labrenzia alexandrii DFL-11]
 gi|222436743|gb|EEE43422.1| Glycosyl hydrolase family 9 [Labrenzia alexandrii DFL-11]
          Length = 557

 Score = 37.4 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 56/165 (33%), Gaps = 9/165 (5%)

Query: 32  IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ----SVQGVGARVAM 87
           +RT   + K  +   L  E +   D +      +     +F  LQ    +V+G       
Sbjct: 147 LRTSYGIPKSSE--FLDPELYAGTDDLPDLLHEAIWTIDFFRRLQGPDGTVRGGIESAGH 204

Query: 88  GVLSRITATE-LVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCV 146
            +L   +  E L       +         I+  +A     E  GK    +  +       
Sbjct: 205 PMLGTASFLETLPVFTYAPDISSTYTYAAIAGSLARH--LETYGKPDLAAVYLGSAFRAW 262

Query: 147 NKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNI 191
           +  +A +  + +F  +A++ LV  GY   +    +   LK+E   
Sbjct: 263 DAAEAGLSDIDAFYTDAVAGLVAGGYSNSEGWPEIRLKLKEEAET 307


>gi|257051367|ref|YP_003129200.1| hypothetical protein Huta_0279 [Halorhabdus utahensis DSM 12940]
 gi|256690130|gb|ACV10467.1| conserved hypothetical protein [Halorhabdus utahensis DSM 12940]
          Length = 174

 Score = 37.0 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/125 (10%), Positives = 36/125 (28%)

Query: 81  VGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQ 140
           VG      +       E  +       +    +   +    +    + +   ++    + 
Sbjct: 5   VGCTDCSALWVIEGRPETSQCPRCGKRRQFDLLRKFAQTETADAARQARAAMLAERQDLG 64

Query: 141 QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRL 200
           +    ++       ++    I+    L + G   D+A  A     +         +I+R 
Sbjct: 65  EAFDGLDSYAEMEAAVSEAVIDDDEYLESKGVDSDEAADAGRRATEGAGGSTSREEIVRA 124

Query: 201 ALRAI 205
           AL  +
Sbjct: 125 ALVEL 129


>gi|46201468|ref|ZP_00208112.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 221

 Score = 36.6 bits (83), Expect = 2.0,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 2   IGKIKGNIE-GLYEDYVLIDVQGVCYIIYC 30
           I +++G +E       +++ VQGV Y I  
Sbjct: 192 ISRLRGKLERSRKTPTLILTVQGVGYRINL 221


>gi|238855203|ref|ZP_04645522.1| conserved virulence factor B [Lactobacillus jensenii 269-3]
 gi|260664566|ref|ZP_05865418.1| RNA-binding protein [Lactobacillus jensenii SJ-7A-US]
 gi|282932503|ref|ZP_06337928.1| conserved virulence factor B [Lactobacillus jensenii 208-1]
 gi|313471968|ref|ZP_07812460.1| S1 RNA binding domain protein [Lactobacillus jensenii 1153]
 gi|238832095|gb|EEQ24413.1| conserved virulence factor B [Lactobacillus jensenii 269-3]
 gi|260561631|gb|EEX27603.1| RNA-binding protein [Lactobacillus jensenii SJ-7A-US]
 gi|281303452|gb|EFA95629.1| conserved virulence factor B [Lactobacillus jensenii 208-1]
 gi|313449039|gb|EFR61307.1| S1 RNA binding domain protein [Lactobacillus jensenii 1153]
          Length = 292

 Score = 36.6 bits (83), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 1  MIGKI-KGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE 50
          M+G I KG +    ++   + V GV Y +     T   + ++GD    F+ 
Sbjct: 1  MLGTIQKGKVIDKNDEAYYVQVDGVTYELNKLEVTQEQMPQLGDIVQGFIY 51


>gi|165933332|ref|YP_001650121.1| 30S ribosomal protein S1 [Rickettsia rickettsii str. Iowa]
 gi|165908419|gb|ABY72715.1| SSU ribosomal protein S1P [Rickettsia rickettsii str. Iowa]
          Length = 568

 Score = 36.2 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 9/61 (14%)

Query: 5  IKGNIEGLYEDYVLIDVQ----GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
          +KG +  +  D +++DV     G       P      L ++GD   +F+ET   ++   +
Sbjct: 42 VKGQVIEIKNDIIIVDVGLKNEG-----RIPKSEFLALPEVGDVVEVFIETIEGRNGRTI 96

Query: 61 F 61
           
Sbjct: 97 L 97


>gi|323452946|gb|EGB08819.1| hypothetical protein AURANDRAFT_63816 [Aureococcus anophagefferens]
          Length = 1872

 Score = 36.2 bits (82), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/110 (11%), Positives = 32/110 (29%), Gaps = 2/110 (1%)

Query: 90   LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKE 149
             +     E++      ++K   + P    +  +++   L  K   +   ++  +      
Sbjct: 1050 CNDGEIKEILFKFSHGDAKRATKPPPKGTRAVTKLRNLLLDKFEGMGGNMRVAVKHTLGH 1109

Query: 150  QAHICSMPSFAINAISALVNL--GYGQDQATTAVVSVLKKEKNIADDSQI 197
                 S        + AL  L  G   DQ      ++   +       +I
Sbjct: 1110 YDADGSGELERGECVKALSGLLPGITDDQIGALFDTIDADKSETLTVDEI 1159


>gi|257462986|ref|ZP_05627390.1| hypothetical protein FuD12_03991 [Fusobacterium sp. D12]
          Length = 53

 Score = 36.2 bits (82), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 154 CSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
            S  ++A +  SAL NLGY + +    +    +         + ++  L+ +
Sbjct: 1   NSAVTWAEDIASALENLGYAKKEIEQLLQQ--ETWVEYQSLEEAMKGILKKM 50


>gi|317126956|ref|YP_004093238.1| RuvA domain protein [Bacillus cellulosilyticus DSM 2522]
 gi|315471904|gb|ADU28507.1| RuvA domain protein [Bacillus cellulosilyticus DSM 2522]
          Length = 536

 Score = 36.2 bits (82), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 26/64 (40%)

Query: 143 MSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLAL 202
           M+ + +             +A   L  LG+  D A  AV   + +   + + SQI++ A 
Sbjct: 425 MNSLQEGAKRKNEQLQLIDDATFRLGMLGFNNDVAVKAVQKAISENNQLEEVSQIVKDAF 484

Query: 203 RAIS 206
             ++
Sbjct: 485 LLLN 488


>gi|217076392|ref|YP_002334108.1| SufB/sufD domain protein [Thermosipho africanus TCF52B]
 gi|217036245|gb|ACJ74767.1| SufB/sufD domain protein [Thermosipho africanus TCF52B]
          Length = 374

 Score = 35.8 bits (81), Expect = 3.4,   Method: Composition-based stats.
 Identities = 11/79 (13%), Positives = 31/79 (39%), Gaps = 4/79 (5%)

Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT-AVVSVLKKE 188
            K   + ++    +       +H  S      +AI  L++ G+ + +A +  +  + +  
Sbjct: 293 SKDSKMEAIPSLLVDENEVTASHAASSAPLDEDAIFYLMSRGFNRKEAKSFILNGIFENL 352

Query: 189 KNIADD---SQIIRLALRA 204
            N        ++++ AL+ 
Sbjct: 353 INELSVFGLEEVVKNALKK 371


>gi|302765759|ref|XP_002966300.1| hypothetical protein SELMODRAFT_86216 [Selaginella moellendorffii]
 gi|300165720|gb|EFJ32327.1| hypothetical protein SELMODRAFT_86216 [Selaginella moellendorffii]
          Length = 779

 Score = 35.8 bits (81), Expect = 3.7,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 3/90 (3%)

Query: 109 VIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALV 168
           +    P +  + A+   +    +      +   D   ++   +H  S  +   NA+ ALV
Sbjct: 603 MDMGFPRVRCEKAAIFTSNHGAEPAMEWLLSHMDDPDIDVPYSHSSSNANVDENAVQALV 662

Query: 169 NLGYGQDQATTAVVSVLKKEKNIADDSQII 198
            LG+  D A  A+ +         D ++ I
Sbjct: 663 ALGFSADLARKALRA---TGGRTEDAAEWI 689


>gi|282852795|ref|ZP_06262137.1| RuvA, C-terminal domain protein [Lactobacillus gasseri 224-1]
 gi|282556537|gb|EFB62157.1| RuvA, C-terminal domain protein [Lactobacillus gasseri 224-1]
          Length = 43

 Score = 35.8 bits (81), Expect = 3.9,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 164 ISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205
           + ALV LGY Q +       + K  +N AD    I+ AL  +
Sbjct: 1   MLALVALGYTQKEVDRITPKLAKLPENTADG--YIKEALALL 40


>gi|55821228|ref|YP_139670.1| DNA replication protein dnaD [Streptococcus thermophilus LMG 18311]
 gi|55823140|ref|YP_141581.1| DNA replication protein dnaD [Streptococcus thermophilus CNRZ1066]
 gi|116627955|ref|YP_820574.1| DNA replication protein dnaD [Streptococcus thermophilus LMD-9]
 gi|55737213|gb|AAV60855.1| DNA replication protein dnaD [Streptococcus thermophilus LMG 18311]
 gi|55739125|gb|AAV62766.1| DNA replication protein dnaD [Streptococcus thermophilus CNRZ1066]
 gi|116101232|gb|ABJ66378.1| DNA replication protein DnaD [Streptococcus thermophilus LMD-9]
 gi|312278543|gb|ADQ63200.1| DNA replication protein DnaD [Streptococcus thermophilus ND03]
          Length = 232

 Score = 35.5 bits (80), Expect = 4.2,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 44/139 (31%), Gaps = 11/139 (7%)

Query: 71  WFMLLQSVQGVGARVAMGVLSRIT--ATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
            F+ LQ+   +G   +  +        TE+ +SI       +     + +    +++ + 
Sbjct: 36  QFLYLQTTTQIGEVASSQIAQATGKTPTEVNKSITTLTEAGLLDFTTVKVNNEIKMVVDA 95

Query: 129 KGKAISLSSVVQQDMSCVNKEQAHICSMP---SFAINAISALVNLGYGQDQATTAVVSVL 185
                 L  +V  + S          +             AL  L          +  + 
Sbjct: 96  SPALAVLDKLVSSENSTTGPVAGQPTNTQLIKQLTDELEQALGILN------PMVIEDLN 149

Query: 186 KKEKNIADDSQIIRLALRA 204
           K+ +    D ++IR AL+ 
Sbjct: 150 KEIQEEHTDPELIREALKE 168


>gi|291277253|ref|YP_003517025.1| 50S ribosomal protein L6 [Helicobacter mustelae 12198]
 gi|290964447|emb|CBG40297.1| 50S ribosomal protein L6 [Helicobacter mustelae 12198]
          Length = 178

 Score = 35.5 bits (80), Expect = 4.5,   Method: Composition-based stats.
 Identities = 6/19 (31%), Positives = 11/19 (57%)

Query: 18  LIDVQGVCYIIYCPIRTLS 36
           +++V GV Y +    +TL 
Sbjct: 86  VLEVNGVGYKVAVSGKTLE 104


>gi|322419014|ref|YP_004198237.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. M18]
 gi|320125401|gb|ADW12961.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. M18]
          Length = 396

 Score = 35.1 bits (79), Expect = 6.1,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 80/208 (38%), Gaps = 16/208 (7%)

Query: 6   KGNIEGLYEDYVLIDVQGV-----CYIIYCPIRTLSCLGKIG-DFCTLFVETHMRQDQIR 59
           +G +  + ++ V++D+ G+      Y ++  +  L  L  I  +   L +  +M  +   
Sbjct: 9   RGRVLIIDDEKVILDLTGIILKNRGYQVFTALSALEGLETIEIERPELVLLDYMMPNMDG 68

Query: 60  LFGFLSDLDRQWFMLLQSVQGVGA-RVAMGVLSRITATELVESIILQN----SKVIAQIP 114
           L              +    G G+  +A+ ++    +  +++    Q+     + + ++ 
Sbjct: 69  LTALKEIKRLYPDTYVIMFTGKGSEEIAVELMKAGASDYILKPFNNQDLVERIESVLKLR 128

Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174
           GI ++  ++ +   + + ++      +++     E++   S     +     L +LGY  
Sbjct: 129 GIELQ--NKALLSERERLLAEIEDWNRELEARVHEKSEALSRAQAEVVQSEKLASLGYL- 185

Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLAL 202
             +      +     +IA   Q+I+  L
Sbjct: 186 --SAGMAHEIRNPLNSIALFVQLIKGGL 211


>gi|67459163|ref|YP_246787.1| 30S ribosomal protein S1 [Rickettsia felis URRWXCal2]
 gi|75536405|sp|Q4ULF1|RS1_RICFE RecName: Full=30S ribosomal protein S1
 gi|67004696|gb|AAY61622.1| 30S ribosomal protein S1 [Rickettsia felis URRWXCal2]
          Length = 568

 Score = 34.7 bits (78), Expect = 8.2,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 9/61 (14%)

Query: 5  IKGNIEGLYEDYVLIDVQ----GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
          +KG +  +  D V++DV     G       P      L ++GD   +F+E    ++   +
Sbjct: 42 VKGQVIEIKNDMVIVDVGLKNEG-----RIPKSEFLALPEVGDVVEVFIEKIEGRNGRTI 96

Query: 61 F 61
           
Sbjct: 97 L 97


>gi|51473703|ref|YP_067460.1| 30S ribosomal protein S1 [Rickettsia typhi str. Wilmington]
 gi|81390060|sp|Q68WL4|RS1_RICTY RecName: Full=30S ribosomal protein S1
 gi|51460015|gb|AAU03978.1| 30S ribosomal protein S1 [Rickettsia typhi str. Wilmington]
          Length = 568

 Score = 34.7 bits (78), Expect = 8.5,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 9/61 (14%)

Query: 5  IKGNIEGLYEDYVLIDVQ----GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
          +KG +  +  D +++DV     G       P      L ++GD   +F+E    ++   +
Sbjct: 42 VKGQVIEIKNDMIIVDVGLKNEG-----RIPKSEFLSLPEVGDVVEVFIEKIEGRNGRTI 96

Query: 61 F 61
           
Sbjct: 97 L 97


>gi|312862737|ref|ZP_07722977.1| DnaD domain protein [Streptococcus vestibularis F0396]
 gi|322516626|ref|ZP_08069540.1| DNA replication protein DnaD [Streptococcus vestibularis ATCC
           49124]
 gi|311101597|gb|EFQ59800.1| DnaD domain protein [Streptococcus vestibularis F0396]
 gi|322124896|gb|EFX96320.1| DNA replication protein DnaD [Streptococcus vestibularis ATCC
           49124]
          Length = 232

 Score = 34.7 bits (78), Expect = 8.6,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 44/139 (31%), Gaps = 11/139 (7%)

Query: 71  WFMLLQSVQGVGARVAMGVLSRITAT--ELVESIILQNSKVIAQIPGISMKIASRIMTEL 128
            F+ LQ+   +G   +  +      T  E+ +SI       +     I +     ++ + 
Sbjct: 36  QFLYLQTTTQIGEVASSQIAQATGKTLTEVNKSITTLTEAGLLDFTTIKVNNEIEMVVDA 95

Query: 129 KGKAI---SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVL 185
                    L S  +     V  +  +   +         AL  L          +  + 
Sbjct: 96  SPALAVLDKLVSSEKPTTGPVVGQPTNTQLIKQLTDELEQALGILN------PMVIEDLN 149

Query: 186 KKEKNIADDSQIIRLALRA 204
           K+ +    D ++IR AL+ 
Sbjct: 150 KEIQEEHTDPELIREALKE 168


>gi|297840349|ref|XP_002888056.1| hypothetical protein ARALYDRAFT_893300 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297333897|gb|EFH64315.1| hypothetical protein ARALYDRAFT_893300 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 427

 Score = 34.7 bits (78), Expect = 8.6,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 5/118 (4%)

Query: 67  LDRQWFMLLQSVQGVGARVAMGVLSRITATEL-VESIILQNSKVIAQIPGISMKIASRIM 125
             R  F LL S Q V     +  +S     +L  +       + +  + G+S K      
Sbjct: 206 PQRLLFSLLISNQHVCCGKEIFEVSLRKVVDLGFDPTTSTFVEALCTVYGMSDKTIE--- 262

Query: 126 TELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVS 183
            E       L   V+   +   K    + +      N+I   + LG+ +D     V  
Sbjct: 263 -EKVDVYKRLGFAVEDVWAMFKKWPLSLANSEKKVANSIETFLGLGFSRDDFVRIVKR 319


>gi|332308216|ref|YP_004436067.1| ATP-binding protein [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175545|gb|AEE24799.1| ATP-binding protein [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 530

 Score = 34.7 bits (78), Expect = 8.8,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 40/113 (35%), Gaps = 4/113 (3%)

Query: 97  ELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS---LSSVVQQDMSCVNKEQAHI 153
           EL   +   + K I  I          ++ E          L           + + + I
Sbjct: 376 ELFRRVYQDDFKPIHPIMNALRSKNPELIAEYADLPQPQIVLKIASLNKSIIESNKASVI 435

Query: 154 CSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206
            +M       +  L+ +GY +  A  AV +V  +  ++   S ++ L ++ ++
Sbjct: 436 ETMEPVVQALLDCLIQIGYEKKVAQPAVEAVFSEHPSLNKKS-LLPLVIKLLA 487


>gi|34581621|ref|ZP_00143101.1| 30S ribosomal protein S1 [Rickettsia sibirica 246]
 gi|28263006|gb|EAA26510.1| 30S ribosomal protein S1 [Rickettsia sibirica 246]
          Length = 568

 Score = 34.7 bits (78), Expect = 8.8,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 9/61 (14%)

Query: 5  IKGNIEGLYEDYVLIDVQ----GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
          +KG +  +  D +++DV     G       P      L ++GD   +F+E    ++   +
Sbjct: 42 VKGQVIEIKNDIIIVDVGLKNEG-----RIPKSEFLALPEVGDVVEVFIEKIEGRNGRTI 96

Query: 61 F 61
           
Sbjct: 97 L 97


>gi|239948027|ref|ZP_04699780.1| ribosomal protein S1 [Rickettsia endosymbiont of Ixodes
          scapularis]
 gi|239922303|gb|EER22327.1| ribosomal protein S1 [Rickettsia endosymbiont of Ixodes
          scapularis]
          Length = 568

 Score = 34.7 bits (78), Expect = 8.8,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 9/61 (14%)

Query: 5  IKGNIEGLYEDYVLIDVQ----GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
          +KG +  +  D +++DV     G       P      L ++GD   +F+E    ++   +
Sbjct: 42 VKGQVIEIKNDMIIVDVGLKNEG-----RIPKSEFLALPEVGDVVEVFIEKIEGRNGRTI 96

Query: 61 F 61
           
Sbjct: 97 L 97


>gi|229586799|ref|YP_002845300.1| 30S ribosomal protein S1 [Rickettsia africae ESF-5]
 gi|228021849|gb|ACP53557.1| 30S ribosomal protein S1 [Rickettsia africae ESF-5]
          Length = 568

 Score = 34.7 bits (78), Expect = 8.9,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 9/61 (14%)

Query: 5  IKGNIEGLYEDYVLIDVQ----GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
          +KG +  +  D +++DV     G       P      L ++GD   +F+E    ++   +
Sbjct: 42 VKGQVIEIKNDIIIVDVGLKNEG-----RIPKSEFLALPEVGDVVEVFIEKIEGRNGRTI 96

Query: 61 F 61
           
Sbjct: 97 L 97


>gi|15892670|ref|NP_360384.1| 30S ribosomal protein S1 [Rickettsia conorii str. Malish 7]
 gi|81528161|sp|Q92HM4|RS1_RICCN RecName: Full=30S ribosomal protein S1
 gi|15619842|gb|AAL03285.1| 30S ribosomal protein S1 [Rickettsia conorii str. Malish 7]
          Length = 568

 Score = 34.7 bits (78), Expect = 9.0,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 9/61 (14%)

Query: 5  IKGNIEGLYEDYVLIDVQ----GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
          +KG +  +  D +++DV     G       P      L ++GD   +F+E    ++   +
Sbjct: 42 VKGQVIEIKNDIIIVDVGLKNEG-----RIPKSEFLALPEVGDVVEVFIEKIEGRNGRTI 96

Query: 61 F 61
           
Sbjct: 97 L 97


>gi|15604379|ref|NP_220895.1| 30S ribosomal protein S1 [Rickettsia prowazekii str. Madrid E]
 gi|6226091|sp|Q9ZD28|RS1_RICPR RecName: Full=30S ribosomal protein S1
 gi|3861071|emb|CAA14971.1| 30S RIBOSOMAL PROTEIN S1 (rpsA) [Rickettsia prowazekii]
 gi|292572134|gb|ADE30049.1| 30S ribosomal protein S1 [Rickettsia prowazekii Rp22]
          Length = 568

 Score = 34.7 bits (78), Expect = 9.0,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 9/61 (14%)

Query: 5  IKGNIEGLYEDYVLIDVQ----GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
          +KG +  +  D +++DV     G       P      L ++GD   +F+E    ++   +
Sbjct: 42 VKGQVIEIKNDMIIVDVGLKNEG-----RIPKSEFLSLPEVGDVVEVFIEKIEGRNGRTI 96

Query: 61 F 61
           
Sbjct: 97 L 97


>gi|157964625|ref|YP_001499449.1| 30S ribosomal protein S1 [Rickettsia massiliae MTU5]
 gi|157844401|gb|ABV84902.1| 30S ribosomal protein S1 [Rickettsia massiliae MTU5]
          Length = 568

 Score = 34.3 bits (77), Expect = 9.1,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 9/61 (14%)

Query: 5  IKGNIEGLYEDYVLIDVQ----GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
          +KG +  +  D +++DV     G       P      L ++GD   +F+E    ++   +
Sbjct: 42 VKGQVIEIKNDMIIVDVGLKNEG-----RIPKSEFLALPEVGDVVEVFIEKIEGRNGRTI 96

Query: 61 F 61
           
Sbjct: 97 L 97


>gi|238650580|ref|YP_002916432.1| 30S ribosomal protein S1 [Rickettsia peacockii str. Rustic]
 gi|238624678|gb|ACR47384.1| 30S ribosomal protein S1 [Rickettsia peacockii str. Rustic]
          Length = 568

 Score = 34.3 bits (77), Expect = 9.4,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 9/61 (14%)

Query: 5  IKGNIEGLYEDYVLIDVQ----GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
          +KG +  +  D +++DV     G       P      L ++GD   +F+E    ++   +
Sbjct: 42 VKGQVIEIKNDIIIVDVGLKNEG-----RIPKSEFLALPEVGDVVEVFIEKIEGRNGRTI 96

Query: 61 F 61
           
Sbjct: 97 L 97


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.313    0.131    0.364 

Lambda     K      H
   0.267   0.0402    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,502,350,516
Number of Sequences: 14124377
Number of extensions: 51368420
Number of successful extensions: 345040
Number of sequences better than 10.0: 2114
Number of HSP's better than 10.0 without gapping: 2051
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 338375
Number of HSP's gapped (non-prelim): 2213
length of query: 207
length of database: 4,842,793,630
effective HSP length: 133
effective length of query: 74
effective length of database: 2,964,251,489
effective search space: 219354610186
effective search space used: 219354610186
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.0 bits)
S2: 78 (34.7 bits)