BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780553|ref|YP_003064966.1| Holliday junction DNA helicase RuvA [Candidatus Liberibacter asiaticus str. psy62] (207 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|89094837|ref|ZP_01167770.1| Holliday junction DNA helicase RuvA [Oceanospirillum sp. MED92] gi|89080892|gb|EAR60131.1| Holliday junction DNA helicase RuvA [Oceanospirillum sp. MED92] Length = 210 Score = 196 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 66/208 (31%), Positives = 104/208 (50%), Gaps = 3/208 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++KG + ++IDVQGV Y + + T L ++G TLF +R+D L Sbjct: 1 MIGRLKGELIEKQPPQLVIDVQGVGYEVEASMNTFYRLPELGSTLTLFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L GVG ++A+ +LS I+ +E V + ++ + ++PG+ K Sbjct: 61 YGFYDKEERSLFRTLIKANGVGPKLAITILSGISTSEFVRCVNDGDTASLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQD---MSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ E+K K +L D + + A A SALV LGY QA Sbjct: 121 AERLIVEMKDKIKALGLETSGDFELSAADGPDMASFEPQADNRAEAESALVALGYKPVQA 180 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 T A+ V K + A ++IR ALR++ Sbjct: 181 TKAIEQVFKTLGSSASSEELIRHALRSM 208 >gi|262394694|ref|YP_003286548.1| holliday junction DNA helicase RuvA [Vibrio sp. Ex25] gi|262338288|gb|ACY52083.1| holliday junction DNA helicase RuvA [Vibrio sp. Ex25] Length = 203 Score = 193 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 99/205 (48%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLI+V G+ Y + P+ L +G+ ++ +R+D L Sbjct: 1 MIGRLRGTLIEKQPPEVLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TAT+ V + ++ + ++PG+ K Sbjct: 61 YGFNTVKERALFREVIKANGVGPKLGLGILSGMTATQFVTCVEHEDVSTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + + + + AISAL+ LGY QA+ Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPFTDAAPADSGATSNNAEEEAISALLALGYKPTQASKV 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + K Q+IR AL+++ Sbjct: 181 VSQIAK---PDMSSEQMIREALKSM 202 >gi|289674670|ref|ZP_06495560.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. syringae FF5] gi|302187157|ref|ZP_07263830.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. syringae 642] gi|330950609|gb|EGH50869.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae Cit 7] Length = 202 Score = 193 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 115/205 (56%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G++ ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGSLAEKQPPHLVLDVNGVGYEVEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + S + + V+ + S +A+SAL++LGY +A+ A Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNQAEPVASAESDAVSALISLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ +K+ + AD +IR AL+ + Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201 >gi|170723160|ref|YP_001750848.1| Holliday junction DNA helicase RuvA [Pseudomonas putida W619] gi|229560119|sp|B1JD71|RUVA_PSEPW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|169761163|gb|ACA74479.1| Holliday junction DNA helicase RuvA [Pseudomonas putida W619] Length = 205 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 112/205 (54%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +++IDV GV Y + P+ TL L K+G+ T+ +R+D L Sbjct: 1 MIGRLRGTLAEKQPPHLIIDVNGVGYELEVPMTTLYRLPKVGETVTVHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + A ELV + Q++ + ++PG+ K Sbjct: 61 YGFHEKRERELFRELIRLNGVGPKLALALMSGLEADELVRCVQAQDTSALVRVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + + V+ + + +A+SALV+LGY +A+ A Sbjct: 121 AERLLVELKDRFKAW-ETSPAMFTLVSDGPVPVSGASTAEADAVSALVSLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ K+K ++IR +L+ + Sbjct: 180 VSAI--KDKAGLSSEELIRRSLKGM 202 >gi|66044657|ref|YP_234498.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. syringae B728a] gi|75502953|sp|Q4ZWL2|RUVA_PSEU2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|63255364|gb|AAY36460.1| DNA recombination protein, RuvA [Pseudomonas syringae pv. syringae B728a] gi|330968891|gb|EGH68957.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. aceris str. M302273PT] Length = 202 Score = 192 bits (487), Expect = 3e-47, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 114/205 (55%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G++ ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGSLAEKQPPHLVLDVNGVGYEVEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + + + V+ + S +A+SAL++LGY +A+ A Sbjct: 121 AERLLVELKDRFKAW-EALPGTFTLVSNGPNQAEPVASAESDAVSALISLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ +K+ + AD +IR AL+ + Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201 >gi|26987951|ref|NP_743376.1| Holliday junction DNA helicase RuvA [Pseudomonas putida KT2440] gi|148546488|ref|YP_001266590.1| Holliday junction DNA helicase RuvA [Pseudomonas putida F1] gi|37999646|sp|Q88NJ1|RUVA_PSEPK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230586|sp|A5VZU6|RUVA_PSEP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|24982663|gb|AAN66840.1|AE016312_11 Holliday junction DNA helicase RuvA [Pseudomonas putida KT2440] gi|148510546|gb|ABQ77406.1| Holliday junction DNA helicase subunit RuvA [Pseudomonas putida F1] gi|313497567|gb|ADR58933.1| RuvA [Pseudomonas putida BIRD-1] Length = 205 Score = 192 bits (487), Expect = 3e-47, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 112/205 (54%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +++IDV GV Y + P+ TL L K+G+ T+ +R+D L Sbjct: 1 MIGRLRGTLAEKQPPHLIIDVNGVGYELEVPMTTLYRLPKVGETVTVHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + ++PG+ K Sbjct: 61 YGFAEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALVRVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + + V+ + S S +A+SALV+LGY +A+ A Sbjct: 121 AERLLVELKDRFKAW-ETSPAMFTLVSDGPLPVASESSAEADAVSALVSLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ K+K ++IR +L+ + Sbjct: 180 IAAI--KDKAGLSSEELIRRSLKGM 202 >gi|70732089|ref|YP_261845.1| Holliday junction DNA helicase RuvA [Pseudomonas fluorescens Pf-5] gi|90135592|sp|Q4K7D8|RUVA_PSEF5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|68346388|gb|AAY93994.1| Holliday junction DNA helicase RuvA [Pseudomonas fluorescens Pf-5] Length = 202 Score = 191 bits (486), Expect = 4e-47, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 109/205 (53%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV G+ Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGTLAEKQPPHLILDVNGLGYEVEVPMTTLYRLPSVGEPLTLHTHLVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R +F L + GVG ++A+ ++S + ELV + Q++ + ++PG+ K Sbjct: 61 YGFASKRERDFFRELIRLNGVGPKLALALMSSLEVDELVRCVQAQDTSALTKVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + V + V + + S +A+SAL++LGY +A+ A Sbjct: 121 AERLLVELKDRFKAW-EAVPSMFALVPNQPDAPAPVASAESDAVSALISLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ K +IR AL+ + Sbjct: 180 VSAIKDK---GLSSEDMIRRALKGM 201 >gi|85712318|ref|ZP_01043369.1| Holliday junction resolvasome, DNA-binding subunit [Idiomarina baltica OS145] gi|85693945|gb|EAQ31892.1| Holliday junction resolvasome, DNA-binding subunit [Idiomarina baltica OS145] Length = 206 Score = 191 bits (486), Expect = 4e-47, Method: Composition-based stats. Identities = 62/209 (29%), Positives = 100/209 (47%), Gaps = 6/209 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + VL+DVQGV Y I P+ L G+ TL +R+D L Sbjct: 1 MIGQIRGTLVSKQPPEVLVDVQGVGYEIQLPMTCFYQLPATGEPVTLVTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F LL QGVG ++A+ +LS + A E V ++ + + ++PG+ K Sbjct: 61 YGFNSLAERSLFRLLIKTQGVGPKLALAILSGMNADEFVWAVNQNDVSRLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCV---NKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ E++ + N + +A+SAL+ LGY QA Sbjct: 121 AERLVIEMRDRLKDWQGSSTPATDAAPLDNVSGDALVHPADARNDALSALLALGYKPVQA 180 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ +V ++ +IR AL+ +S Sbjct: 181 EKALKAVYQQ---GESSETLIRSALKQLS 206 >gi|104783073|ref|YP_609571.1| Holliday junction DNA helicase RuvA [Pseudomonas entomophila L48] gi|123079106|sp|Q1I6E8|RUVA_PSEE4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|95112060|emb|CAK16787.1| holliday junction helicase subunit A [Pseudomonas entomophila L48] Length = 205 Score = 191 bits (486), Expect = 4e-47, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 113/205 (55%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +++IDV GV Y + P+ TL L K+G+ T+ +R+D L Sbjct: 1 MIGRLRGTLAEKQPPHLIIDVNGVGYELEVPMTTLYRLPKVGEPVTVHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ V+ ++PG+ K Sbjct: 61 YGFAEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDASVLVRVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + + V+ + S S +A+SALV+LGY +A+ A Sbjct: 121 AERLLVELKDRFKAW-ETSPAMFTLVSDGPLPVASESSAEADAVSALVSLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ K+K ++IR +L+ + Sbjct: 180 IAAI--KDKAGLSSEELIRRSLKGM 202 >gi|91227614|ref|ZP_01261918.1| Holliday junction DNA helicase motor protein [Vibrio alginolyticus 12G01] gi|91188507|gb|EAS74800.1| Holliday junction DNA helicase motor protein [Vibrio alginolyticus 12G01] Length = 203 Score = 191 bits (486), Expect = 4e-47, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 99/205 (48%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLI+V G+ Y + P+ L +G+ ++ +R+D L Sbjct: 1 MIGRLRGILIEKQPPEVLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TAT+ V + ++ + ++PG+ K Sbjct: 61 YGFNTVKERALFREVIKANGVGPKLGLGILSGMTATQFVTCVEHEDVSTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + + + + AISAL+ LGY QA+ Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPFTDAAPADSGATSNNAEEEAISALLALGYKPTQASKV 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + K Q+IR AL+++ Sbjct: 181 VSQIAK---PDMSSEQMIREALKSM 202 >gi|167035195|ref|YP_001670426.1| Holliday junction DNA helicase RuvA [Pseudomonas putida GB-1] gi|189045762|sp|B0KTJ3|RUVA_PSEPG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166861683|gb|ABZ00091.1| Holliday junction DNA helicase RuvA [Pseudomonas putida GB-1] Length = 205 Score = 191 bits (486), Expect = 4e-47, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 112/205 (54%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +++IDV GV Y + P+ TL L K+G+ T+ +R+D L Sbjct: 1 MIGRLRGTLAEKQPPHLIIDVNGVGYELEVPMTTLYRLPKVGEAVTVHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + ++PG+ K Sbjct: 61 YGFAEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALVRVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + + V+ + S S +A+SALV+LGY +A+ A Sbjct: 121 AERLLVELKDRFKAW-ETSPAMFTLVSDGPLPVASESSAEADAVSALVSLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ K+K ++IR +L+ + Sbjct: 180 IAAI--KDKAGLSSEELIRRSLKGM 202 >gi|331016439|gb|EGH96495.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 202 Score = 191 bits (486), Expect = 4e-47, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 116/205 (56%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGAIAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + S + + V+ H+ + S +A+SAL++LGY +A+ A Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNHVDPVASAESDAVSALISLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ +K+ + AD +IR AL+ + Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201 >gi|28871123|ref|NP_793742.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. tomato str. DC3000] gi|213969185|ref|ZP_03397324.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. tomato T1] gi|301384820|ref|ZP_07233238.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. tomato Max13] gi|302063526|ref|ZP_07255067.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. tomato K40] gi|302130610|ref|ZP_07256600.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. tomato NCPPB 1108] gi|37999572|sp|Q87Y34|RUVA_PSESM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|28854373|gb|AAO57437.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. tomato str. DC3000] gi|213926183|gb|EEB59739.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. tomato T1] Length = 202 Score = 191 bits (485), Expect = 5e-47, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 115/205 (56%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGAIAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + S + + V+ H + S +A+SAL++LGY +A+ A Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNHADPVASAESDAVSALISLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ +K+ + AD +IR AL+ + Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201 >gi|254281679|ref|ZP_04956647.1| Holliday junction DNA helicase RuvA [gamma proteobacterium NOR51-B] gi|219677882|gb|EED34231.1| Holliday junction DNA helicase RuvA [gamma proteobacterium NOR51-B] Length = 207 Score = 191 bits (485), Expect = 5e-47, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 104/206 (50%), Gaps = 4/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + + +++DV GV Y I P+ TL L IG +L +R+D +L Sbjct: 1 MIGRIRGILAAKHPPEIVVDVGGVGYEIQVPMTTLFQLPDIGTEVSLVTHFVVREDAQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+S++DR+ F L V GVG R+A+ +LS + A E + + + +PG+ K Sbjct: 61 FGFVSEVDRRLFRELIKVSGVGPRLALTLLSGMDAREFSRCLQRDDVASLVALPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ KA + +M+ A ALV LGY A+ Sbjct: 121 AERLLVEMRDKAGKWLGELSPEMATTVGVAPGPAP-DDAREEAEQALVALGYKLADASRL 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V SV + + A Q+IR AL+A + Sbjct: 180 VASV---DDSGASSEQLIRRALQAAA 202 >gi|163802051|ref|ZP_02195947.1| Holliday junction DNA helicase motor protein [Vibrio sp. AND4] gi|159174192|gb|EDP59000.1| Holliday junction DNA helicase motor protein [Vibrio sp. AND4] Length = 204 Score = 191 bits (484), Expect = 7e-47, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 102/206 (49%), Gaps = 4/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLI+V G+ Y + P+ L +G+ ++ +R+D L Sbjct: 1 MIGRLRGTLLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TA++ V + ++ + ++PG+ K Sbjct: 61 YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDISTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + + + + + + + AISAL+ LGY QA+ Sbjct: 121 AERLVVEMKDRLKGWSAGDLFTPFTDAAPADSGSAASNNAEEEAISALLALGYKPTQASK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 V + K Q+IR AL+++ Sbjct: 181 VVSQIAK---PDMTSEQLIREALKSM 203 >gi|330959265|gb|EGH59525.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. maculicola str. ES4326] Length = 202 Score = 191 bits (484), Expect = 7e-47, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 115/205 (56%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGFLAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGEPVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + S + + V+ + + S +A+SAL++LGY +A+ A Sbjct: 121 AERLLVELKDRFKAWES-LPGTFALVSSGPNQLEPVASAESDAVSALISLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ +K+ + AD +IR AL+ + Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201 >gi|71734074|ref|YP_275913.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. phaseolicola 1448A] gi|90135568|sp|Q48FC4|RUVA_PSE14 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|71554627|gb|AAZ33838.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. phaseolicola 1448A] gi|320323052|gb|EFW79141.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. glycinea str. B076] gi|320329676|gb|EFW85665.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. glycinea str. race 4] gi|330877979|gb|EGH12128.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. glycinea str. race 4] gi|330892240|gb|EGH24901.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. mori str. 301020] gi|330988969|gb|EGH87072.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. lachrymans str. M301315] Length = 202 Score = 191 bits (484), Expect = 7e-47, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 115/205 (56%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G++ ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGSLAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + S + + V+ + S +A+SAL++LGY +A+ A Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNQAEPVASAESDAVSALISLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ +K+ + AD +IR AL+ + Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201 >gi|289626496|ref|ZP_06459450.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289650942|ref|ZP_06482285.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. aesculi str. 2250] gi|330868612|gb|EGH03321.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 202 Score = 190 bits (483), Expect = 8e-47, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 115/205 (56%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G++ ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGSLAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + S + + V+ + S +A+SAL++LGY +A+ A Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNQAEPVASAETDAVSALISLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ +K+ + AD +IR AL+ + Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201 >gi|237800218|ref|ZP_04588679.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023075|gb|EGI03132.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. oryzae str. 1_6] Length = 202 Score = 190 bits (483), Expect = 8e-47, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 115/205 (56%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G+I ++++DV GV Y + P+ TL L +G+ TL+ +R+D L Sbjct: 1 MIGRLRGSIAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGETVTLYTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + + + V+ + S +A+SAL++LGY +A+ A Sbjct: 121 AERLLVELKDRFKAW-EALPGTFALVSNGPNQAEPVASAESDAVSALISLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ +K+ + AD +IR AL+ + Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201 >gi|330872653|gb|EGH06802.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 202 Score = 190 bits (483), Expect = 8e-47, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 115/205 (56%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGAIAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGEIVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + S + + V+ H + S +A+SAL++LGY +A+ A Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNHAEPVASAESDAVSALISLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +V +K+ + AD +IR AL+ + Sbjct: 180 VSAVKEKDLSSAD---LIRRALKGM 201 >gi|298488209|ref|ZP_07006245.1| Holliday junction DNA helicase RuvA [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157267|gb|EFH98351.1| Holliday junction DNA helicase RuvA [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 202 Score = 190 bits (483), Expect = 9e-47, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 115/205 (56%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G++ ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGSLAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDASALTRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + S + + V+ + S +A+SAL++LGY +A+ A Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNQAEPVASAESDAVSALISLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ +K+ + AD +IR AL+ + Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201 >gi|86146483|ref|ZP_01064806.1| Holliday junction DNA helicase motor protein [Vibrio sp. MED222] gi|218709101|ref|YP_002416722.1| Holliday junction DNA helicase RuvA [Vibrio splendidus LGP32] gi|254767400|sp|B7VMI3|RUVA_VIBSL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|85835746|gb|EAQ53881.1| Holliday junction DNA helicase motor protein [Vibrio sp. MED222] gi|218322120|emb|CAV18233.1| Holliday junction DNA helicase ruvA [Vibrio splendidus LGP32] Length = 203 Score = 190 bits (483), Expect = 9e-47, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 104/205 (50%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI+V GV Y + P+ L +G+ ++ +R+D L Sbjct: 1 MIGRLRGTLIEKQPPELLIEVSGVGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TA++ V+S+ ++ + ++PG+ K Sbjct: 61 YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVQSVEREDISTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + + + + ++ A+SAL+ LGY QA+ Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPATDAAPMDSMPTVHDAEEEAVSALLALGYKPTQASKV 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V K + Q+IR AL+++ Sbjct: 181 VSQVAK---DGMTSEQLIREALKSM 202 >gi|257487010|ref|ZP_05641051.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331009348|gb|EGH89404.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 202 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 116/205 (56%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G++ ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGSLAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + S + + V+ S+ S +A+SAL++LGY +A+ A Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNQAESVASAESDAVSALISLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ +K+ + AD +IR AL+ + Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201 >gi|330964824|gb|EGH65084.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. actinidiae str. M302091] Length = 202 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 115/205 (56%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGAIAEKQPPHLVLDVNGVGYELEVPMTTLYRLPHVGEIVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + S + + V+ H + S +A+SAL++LGY +A+ A Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNHAEPVASAESDAVSALISLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ +K+ + AD +IR AL+ + Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201 >gi|157145359|ref|YP_001452679.1| Holliday junction DNA helicase RuvA [Citrobacter koseri ATCC BAA-895] gi|166230539|sp|A8AFI0|RUVA_CITK8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|157082564|gb|ABV12242.1| hypothetical protein CKO_01099 [Citrobacter koseri ATCC BAA-895] Length = 203 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 100/204 (49%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++V GV Y ++ P+ L + G T+F +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLEVGGVGYEVHMPMTCFYELPESGKEATVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEPAALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + A +IR ALRA Sbjct: 181 VSKIAR---PDASSETLIREALRA 201 >gi|307826389|ref|ZP_07656591.1| Holliday junction DNA helicase RuvA [Methylobacter tundripaludum SV96] gi|307732566|gb|EFO03441.1| Holliday junction DNA helicase RuvA [Methylobacter tundripaludum SV96] Length = 203 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 62/203 (30%), Positives = 101/203 (49%), Gaps = 4/203 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + ++++DV GV Y + P+ T L IG TL +R+D L Sbjct: 1 MIGFLRGKLAHKSPPFLMLDVNGVGYEVEAPMTTFYDLPAIGSEITLHTHLVVREDAHIL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ DR F L V GVG ++A+ +LS +A E I +++ + ++PG+ K Sbjct: 61 FGFSTEADRSMFRTLIKVNGVGPKLALTILSGQSAEEFHRCIHNNDTQALVRLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ + L+ + V I + + AISAL +LGY A Sbjct: 121 AERLVIEMRDRLPDLTDSFDSGGTSVAGVD-KIQPVNNPKQEAISALCSLGYKPLDAGKM 179 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V ++ + K IIRLAL+ Sbjct: 180 VQNISAEGK---SCEDIIRLALQ 199 >gi|212212080|ref|YP_002303016.1| Holliday junction DNA helicase RuvA [Coxiella burnetii CbuG_Q212] gi|226698728|sp|B6IYU3|RUVA_COXB2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|212010490|gb|ACJ17871.1| holliday junction DNA helicase [Coxiella burnetii CbuG_Q212] Length = 200 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 100/205 (48%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G I Y+L++V GV Y I P+ T L + + L+ +R+D L Sbjct: 1 MIGHLRGIIVEKQPPYLLLEVAGVGYEITAPLSTFYHLPEPQEEILLYTHLIVREDAHTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +D +R+ F L V GVG ++A+ +LS I E V ++ QN + +IPG+ K Sbjct: 61 YGFHNDHERRLFRALIKVNGVGPKLALAILSGIGPDEFVHCVLNQNIDQLVRIPGVGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E K + + + S +AISAL+ LGY +A A Sbjct: 121 AERLVIETKDRLSRWH------TNDTPSPEGLRSSNTQPTQDAISALMALGYKPQEAKRA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ K +IRLAL+ + Sbjct: 175 IDAIQK---PDLSAETLIRLALKQM 196 >gi|157161330|ref|YP_001458648.1| Holliday junction DNA helicase RuvA [Escherichia coli HS] gi|170019794|ref|YP_001724748.1| Holliday junction DNA helicase RuvA [Escherichia coli ATCC 8739] gi|188494515|ref|ZP_03001785.1| Holliday junction DNA helicase RuvA [Escherichia coli 53638] gi|193069860|ref|ZP_03050809.1| Holliday junction DNA helicase RuvA [Escherichia coli E110019] gi|167012659|sp|A8A161|RUVA_ECOHS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189045753|sp|B1J0M7|RUVA_ECOLC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|157067010|gb|ABV06265.1| Holliday junction DNA helicase RuvA [Escherichia coli HS] gi|169754722|gb|ACA77421.1| Holliday junction DNA helicase RuvA [Escherichia coli ATCC 8739] gi|188489714|gb|EDU64817.1| Holliday junction DNA helicase RuvA [Escherichia coli 53638] gi|192956760|gb|EDV87214.1| Holliday junction DNA helicase RuvA [Escherichia coli E110019] gi|309702085|emb|CBJ01399.1| holliday junction ATP-dependent DNA helicase [Escherichia coli ETEC H10407] gi|323937119|gb|EGB33399.1| Holliday junction DNA helicase RuvA [Escherichia coli E1520] Length = 203 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 99/204 (48%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATNDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + A +IR ALRA Sbjct: 181 VSKIAR---PDASSETLIREALRA 201 >gi|84388519|ref|ZP_00991066.1| Holliday junction DNA helicase motor protein [Vibrio splendidus 12B01] gi|84377068|gb|EAP93939.1| Holliday junction DNA helicase motor protein [Vibrio splendidus 12B01] Length = 203 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 103/205 (50%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI+V GV Y + P+ L +G+ ++ +R+D L Sbjct: 1 MIGRLRGTLIEKQPPELLIEVSGVGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TA++ V+S+ ++ + ++PG+ K Sbjct: 61 YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVQSVEREDISTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + + + + ++ A+SAL+ LGY QA+ Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPATDAAPMDSMPTVHDAEEEAVSALLALGYKPTQASKV 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V K Q+IR AL+++ Sbjct: 181 VAQVAK---GGMTSEQLIREALKSM 202 >gi|300951483|ref|ZP_07165318.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 116-1] gi|300956626|ref|ZP_07168905.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 175-1] gi|300316608|gb|EFJ66392.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 175-1] gi|300449233|gb|EFK12853.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 116-1] Length = 203 Score = 189 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 99/204 (48%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPTADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + A +IR ALRA Sbjct: 181 VSKIAR---PDASSETLIREALRA 201 >gi|49082750|gb|AAT50775.1| PA0966 [synthetic construct] Length = 202 Score = 189 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 110/205 (53%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGTLAEKQPPHLILDVNGVGYEVEVPMTTLYRLPSVGEPVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFAEKRERELFRELIRLNGVGPKLALTLMSGLEVDELVRCVQAQDTSTLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + ++ ++ + E ++ S +A+SAL+ LG+ +A+ A Sbjct: 121 AERLLVELKDRFKAWENM--PTIAPLVMEPRASATVSSAEADAVSALIALGFKPQEASRA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +V ++IR AL+ + Sbjct: 179 VAAVP---GEDLSSEEMIRQALKGM 200 >gi|15802274|ref|NP_288298.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 EDL933] gi|15831825|ref|NP_310598.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. Sakai] gi|16129814|ref|NP_416375.1| component of RuvABC resolvasome, regulatory subunit [Escherichia coli str. K-12 substr. MG1655] gi|26248127|ref|NP_754167.1| Holliday junction DNA helicase RuvA [Escherichia coli CFT073] gi|82543694|ref|YP_407641.1| Holliday junction DNA helicase RuvA [Shigella boydii Sb227] gi|89108701|ref|AP_002481.1| component of RuvABC resolvasome, regulatory subunit [Escherichia coli str. K-12 substr. W3110] gi|91211086|ref|YP_541072.1| Holliday junction DNA helicase RuvA [Escherichia coli UTI89] gi|110641979|ref|YP_669709.1| Holliday junction DNA helicase RuvA [Escherichia coli 536] gi|117624013|ref|YP_852926.1| Holliday junction DNA helicase motor protein [Escherichia coli APEC O1] gi|157159402|ref|YP_001463164.1| Holliday junction DNA helicase RuvA [Escherichia coli E24377A] gi|168747889|ref|ZP_02772911.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4113] gi|168757895|ref|ZP_02782902.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4401] gi|168762345|ref|ZP_02787352.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4501] gi|168770844|ref|ZP_02795851.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4486] gi|168776592|ref|ZP_02801599.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4196] gi|168783161|ref|ZP_02808168.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4076] gi|168788281|ref|ZP_02813288.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC869] gi|168801903|ref|ZP_02826910.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC508] gi|170081517|ref|YP_001730837.1| component of RuvABC resolvasome, regulatory subunit [Escherichia coli str. K-12 substr. DH10B] gi|170683558|ref|YP_001743383.1| Holliday junction DNA helicase RuvA [Escherichia coli SMS-3-5] gi|187730219|ref|YP_001879638.1| Holliday junction DNA helicase RuvA [Shigella boydii CDC 3083-94] gi|191173018|ref|ZP_03034552.1| Holliday junction DNA helicase RuvA [Escherichia coli F11] gi|193066070|ref|ZP_03047127.1| Holliday junction DNA helicase RuvA [Escherichia coli E22] gi|194429662|ref|ZP_03062180.1| Holliday junction DNA helicase RuvA [Escherichia coli B171] gi|195940293|ref|ZP_03085675.1| Holliday junction DNA helicase motor protein [Escherichia coli O157:H7 str. EC4024] gi|208810719|ref|ZP_03252595.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4206] gi|208816922|ref|ZP_03258042.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4045] gi|209396228|ref|YP_002270944.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4115] gi|209919228|ref|YP_002293312.1| Holliday junction DNA helicase RuvA [Escherichia coli SE11] gi|215487074|ref|YP_002329505.1| Holliday junction DNA helicase RuvA [Escherichia coli O127:H6 str. E2348/69] gi|217328695|ref|ZP_03444776.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. TW14588] gi|218554449|ref|YP_002387362.1| Holliday junction DNA helicase RuvA [Escherichia coli IAI1] gi|218558726|ref|YP_002391639.1| Holliday junction DNA helicase RuvA [Escherichia coli S88] gi|218689799|ref|YP_002398011.1| Holliday junction DNA helicase RuvA [Escherichia coli ED1a] gi|218695427|ref|YP_002403094.1| Holliday junction DNA helicase RuvA [Escherichia coli 55989] gi|218699567|ref|YP_002407196.1| Holliday junction DNA helicase RuvA [Escherichia coli IAI39] gi|218705362|ref|YP_002412881.1| Holliday junction DNA helicase RuvA [Escherichia coli UMN026] gi|227885711|ref|ZP_04003516.1| Holliday junction DNA helicase motor protein [Escherichia coli 83972] gi|237705815|ref|ZP_04536296.1| holliday junction helicase subunit B [Escherichia sp. 3_2_53FAA] gi|238901076|ref|YP_002926872.1| component of RuvABC resolvasome, regulatory subunit [Escherichia coli BW2952] gi|254793485|ref|YP_003078322.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. TW14359] gi|256022473|ref|ZP_05436338.1| Holliday junction DNA helicase RuvA [Escherichia sp. 4_1_40B] gi|260844205|ref|YP_003221983.1| component of RuvABC resolvasome, regulatory subunit RuvA [Escherichia coli O103:H2 str. 12009] gi|261227638|ref|ZP_05941919.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. FRIK2000] gi|261258196|ref|ZP_05950729.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. FRIK966] gi|291283043|ref|YP_003499861.1| Holliday junction ATP-dependent DNA helicase ruvA [Escherichia coli O55:H7 str. CB9615] gi|293405356|ref|ZP_06649348.1| ruvA [Escherichia coli FVEC1412] gi|293410173|ref|ZP_06653749.1| Holliday junction DNA helicase RuvA [Escherichia coli B354] gi|293415176|ref|ZP_06657819.1| Holliday junction DNA helicase RuvA [Escherichia coli B185] gi|293446248|ref|ZP_06662670.1| Holliday junction DNA helicase RuvA [Escherichia coli B088] gi|298380998|ref|ZP_06990597.1| Holliday junction ATP-dependent DNA helicase ruvA [Escherichia coli FVEC1302] gi|300824197|ref|ZP_07104315.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 119-7] gi|300899111|ref|ZP_07117394.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 198-1] gi|300904745|ref|ZP_07122575.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 84-1] gi|300917562|ref|ZP_07134217.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 115-1] gi|300935836|ref|ZP_07150794.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 21-1] gi|300982165|ref|ZP_07175900.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 200-1] gi|300994110|ref|ZP_07180693.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 45-1] gi|301018303|ref|ZP_07182812.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 69-1] gi|301029311|ref|ZP_07192408.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 196-1] gi|301050785|ref|ZP_07197642.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 185-1] gi|301304450|ref|ZP_07210562.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 124-1] gi|306814309|ref|ZP_07448475.1| Holliday junction DNA helicase RuvA [Escherichia coli NC101] gi|307138524|ref|ZP_07497880.1| Holliday junction DNA helicase RuvA [Escherichia coli H736] gi|312967063|ref|ZP_07781281.1| holliday junction DNA helicase RuvA [Escherichia coli 2362-75] gi|331642475|ref|ZP_08343610.1| holliday junction DNA helicase RuvA [Escherichia coli H736] gi|331647458|ref|ZP_08348550.1| holliday junction DNA helicase RuvA [Escherichia coli M605] gi|331653270|ref|ZP_08354275.1| holliday junction DNA helicase RuvA [Escherichia coli M718] gi|331657910|ref|ZP_08358872.1| holliday junction DNA helicase RuvA [Escherichia coli TA206] gi|331673391|ref|ZP_08374159.1| holliday junction DNA helicase RuvA [Escherichia coli TA280] gi|331677742|ref|ZP_08378417.1| holliday junction DNA helicase RuvA [Escherichia coli H591] gi|331683367|ref|ZP_08383968.1| holliday junction DNA helicase RuvA [Escherichia coli H299] gi|67472389|sp|P0A809|RUVA_ECOLI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|67472390|sp|P0A810|RUVA_ECOL6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|67472391|sp|P0A811|RUVA_ECO57 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|90135806|sp|Q322E5|RUVA_SHIBS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|123343927|sp|Q0TGX1|RUVA_ECOL5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|123387921|sp|Q1RAS3|RUVA_ECOUT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230548|sp|A1AC22|RUVA_ECOK1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|167012658|sp|A7ZMY5|RUVA_ECO24 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226698730|sp|B5YR06|RUVA_ECO5E RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226698731|sp|B6IBU0|RUVA_ECOSE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226725440|sp|B7MBS0|RUVA_ECO45 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226725441|sp|B7NS57|RUVA_ECO7I RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226725442|sp|B7M2F2|RUVA_ECO8A RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226725443|sp|B7NBL2|RUVA_ECOLU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226725444|sp|B1LD10|RUVA_ECOSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560029|sp|B1XHC9|RUVA_ECODH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560128|sp|B2TWQ2|RUVA_SHIB3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254766959|sp|B7USN8|RUVA_ECO27 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254766960|sp|B7L7R4|RUVA_ECO55 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254766961|sp|B7MVP7|RUVA_ECO81 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|259495641|sp|C4ZQE5|RUVA_ECOBW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|5107494|pdb|1BDX|A Chain A, E. Coli Dna Helicase Ruva With Bound Dna Holliday Junction, Alpha Carbons And Phosphate Atoms Only gi|5107495|pdb|1BDX|B Chain B, E. Coli Dna Helicase Ruva With Bound Dna Holliday Junction, Alpha Carbons And Phosphate Atoms Only gi|5107496|pdb|1BDX|C Chain C, E. Coli Dna Helicase Ruva With Bound Dna Holliday Junction, Alpha Carbons And Phosphate Atoms Only gi|5107497|pdb|1BDX|D Chain D, E. Coli Dna Helicase Ruva With Bound Dna Holliday Junction, Alpha Carbons And Phosphate Atoms Only gi|9955149|pdb|1C7Y|A Chain A, E.Coli Ruva-Holliday Junction Complex gi|157831340|pdb|1HJP|A Chain A, Holliday Junction Binding Protein Ruva From E. Coli gi|12515917|gb|AAG56851.1|AE005408_9 Holliday junction helicase subunit B; branch migration; repair [Escherichia coli O157:H7 str. EDL933] gi|26108530|gb|AAN80732.1|AE016761_307 Holliday junction DNA helicase ruvA [Escherichia coli CFT073] gi|147782|gb|AAA24612.1| ruvA protein (gtg start) [Escherichia coli] gi|1736508|dbj|BAA15672.1| component of RuvABC resolvasome, regulatory subunit [Escherichia coli str. K12 substr. W3110] gi|1788168|gb|AAC74931.1| component of RuvABC resolvasome, regulatory subunit [Escherichia coli str. K-12 substr. MG1655] gi|13362039|dbj|BAB35994.1| Holliday junction helicase subunit B [Escherichia coli O157:H7 str. Sakai] gi|81245105|gb|ABB65813.1| Holliday junction helicase subunit B [Shigella boydii Sb227] gi|91072660|gb|ABE07541.1| RuvA protein, Holliday junction helicase subunit B [Escherichia coli UTI89] gi|110343571|gb|ABG69808.1| holliday junction DNA helicase RuvA [Escherichia coli 536] gi|115513137|gb|ABJ01212.1| Holliday junction DNA helicase motor protein [Escherichia coli APEC O1] gi|157081432|gb|ABV21140.1| Holliday junction DNA helicase RuvA [Escherichia coli E24377A] gi|169889352|gb|ACB03059.1| component of RuvABC resolvasome, regulatory subunit [Escherichia coli str. K-12 substr. DH10B] gi|170521276|gb|ACB19454.1| Holliday junction DNA helicase RuvA [Escherichia coli SMS-3-5] gi|187427211|gb|ACD06485.1| Holliday junction DNA helicase RuvA [Shigella boydii CDC 3083-94] gi|187768087|gb|EDU31931.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4196] gi|188017456|gb|EDU55578.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4113] gi|188999499|gb|EDU68485.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4076] gi|189355165|gb|EDU73584.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4401] gi|189360288|gb|EDU78707.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4486] gi|189367348|gb|EDU85764.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4501] gi|189372002|gb|EDU90418.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC869] gi|189376026|gb|EDU94442.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC508] gi|190906729|gb|EDV66334.1| Holliday junction DNA helicase RuvA [Escherichia coli F11] gi|192926307|gb|EDV80944.1| Holliday junction DNA helicase RuvA [Escherichia coli E22] gi|194412304|gb|EDX28608.1| Holliday junction DNA helicase RuvA [Escherichia coli B171] gi|195182923|dbj|BAG66491.1| Holliday junction helicase subunit B [Escherichia coli O111:H-] gi|208725235|gb|EDZ74942.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4206] gi|208731265|gb|EDZ79954.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4045] gi|209157628|gb|ACI35061.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC4115] gi|209767468|gb|ACI82046.1| Holliday junction helicase subunit B [Escherichia coli] gi|209767470|gb|ACI82047.1| Holliday junction helicase subunit B [Escherichia coli] gi|209767472|gb|ACI82048.1| Holliday junction helicase subunit B [Escherichia coli] gi|209767474|gb|ACI82049.1| Holliday junction helicase subunit B [Escherichia coli] gi|209767476|gb|ACI82050.1| Holliday junction helicase subunit B [Escherichia coli] gi|209912487|dbj|BAG77561.1| holliday junction helicase subunit RuvA [Escherichia coli SE11] gi|215265146|emb|CAS09534.1| RuvA component of RuvABC resolvasome, regulatory subunit [Escherichia coli O127:H6 str. E2348/69] gi|217318042|gb|EEC26469.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. TW14588] gi|218352159|emb|CAU97898.1| component of RuvABC resolvasome, regulatory subunit [Escherichia coli 55989] gi|218361217|emb|CAQ98801.1| component of RuvABC resolvasome, regulatory subunit [Escherichia coli IAI1] gi|218365495|emb|CAR03222.1| component of RuvABC resolvasome, regulatory subunit [Escherichia coli S88] gi|218369553|emb|CAR17322.1| component of RuvABC resolvasome, regulatory subunit [Escherichia coli IAI39] gi|218427363|emb|CAR08163.1| component of RuvABC resolvasome, regulatory subunit [Escherichia coli ED1a] gi|218432459|emb|CAR13352.1| component of RuvABC resolvasome, regulatory subunit [Escherichia coli UMN026] gi|222033610|emb|CAP76351.1| Holliday junction ATP-dependent DNA helicase ruvA [Escherichia coli LF82] gi|226900572|gb|EEH86831.1| holliday junction helicase subunit B [Escherichia sp. 3_2_53FAA] gi|227837284|gb|EEJ47750.1| Holliday junction DNA helicase motor protein [Escherichia coli 83972] gi|238860169|gb|ACR62167.1| component of RuvABC resolvasome, regulatory subunit [Escherichia coli BW2952] gi|254592885|gb|ACT72246.1| component of RuvABC resolvasome, regulatory subunit [Escherichia coli O157:H7 str. TW14359] gi|257759352|dbj|BAI30849.1| component of RuvABC resolvasome, regulatory subunit RuvA [Escherichia coli O103:H2 str. 12009] gi|260449016|gb|ACX39438.1| Holliday junction DNA helicase RuvA [Escherichia coli DH1] gi|281178931|dbj|BAI55261.1| holliday junction helicase subunit RuvA [Escherichia coli SE15] gi|284921781|emb|CBG34854.1| holliday junction ATP-dependent DNA helicase [Escherichia coli 042] gi|290762916|gb|ADD56877.1| Holliday junction ATP-dependent DNA helicase ruvA [Escherichia coli O55:H7 str. CB9615] gi|291323078|gb|EFE62506.1| Holliday junction DNA helicase RuvA [Escherichia coli B088] gi|291427564|gb|EFF00591.1| ruvA [Escherichia coli FVEC1412] gi|291432824|gb|EFF05803.1| Holliday junction DNA helicase RuvA [Escherichia coli B185] gi|291470641|gb|EFF13125.1| Holliday junction DNA helicase RuvA [Escherichia coli B354] gi|294493531|gb|ADE92287.1| Holliday junction DNA helicase RuvA [Escherichia coli IHE3034] gi|298278440|gb|EFI19954.1| Holliday junction ATP-dependent DNA helicase ruvA [Escherichia coli FVEC1302] gi|299877737|gb|EFI85948.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 196-1] gi|300297540|gb|EFJ53925.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 185-1] gi|300307321|gb|EFJ61841.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 200-1] gi|300357268|gb|EFJ73138.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 198-1] gi|300399739|gb|EFJ83277.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 69-1] gi|300403329|gb|EFJ86867.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 84-1] gi|300406372|gb|EFJ89910.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 45-1] gi|300415216|gb|EFJ98526.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 115-1] gi|300458948|gb|EFK22441.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 21-1] gi|300523268|gb|EFK44337.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 119-7] gi|300840301|gb|EFK68061.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 124-1] gi|305852468|gb|EFM52919.1| Holliday junction DNA helicase RuvA [Escherichia coli NC101] gi|307553880|gb|ADN46655.1| holliday junction ATP-dependent DNA helicase RuvA [Escherichia coli ABU 83972] gi|307626656|gb|ADN70960.1| Holliday junction DNA helicase RuvA [Escherichia coli UM146] gi|312288527|gb|EFR16429.1| holliday junction DNA helicase RuvA [Escherichia coli 2362-75] gi|312946461|gb|ADR27288.1| Holliday junction DNA helicase RuvA [Escherichia coli O83:H1 str. NRG 857C] gi|315136504|dbj|BAJ43663.1| Holliday junction DNA resolvasome [Escherichia coli DH1] gi|315257307|gb|EFU37275.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 85-1] gi|315286570|gb|EFU46005.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 110-3] gi|315290340|gb|EFU49716.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 153-1] gi|315296552|gb|EFU55849.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 16-3] gi|320173573|gb|EFW48768.1| Holliday junction DNA helicase RuvA [Shigella dysenteriae CDC 74-1112] gi|320182601|gb|EFW57490.1| Holliday junction DNA helicase RuvA [Shigella boydii ATCC 9905] gi|320187795|gb|EFW62469.1| Holliday junction DNA helicase RuvA [Shigella flexneri CDC 796-83] gi|320188562|gb|EFW63224.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. EC1212] gi|320194423|gb|EFW69054.1| Holliday junction DNA helicase RuvA [Escherichia coli WV_060327] gi|320641715|gb|EFX11103.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. G5101] gi|320647075|gb|EFX15908.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H- str. 493-89] gi|320652358|gb|EFX20656.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H- str. H 2687] gi|320657959|gb|EFX25721.1| Holliday junction DNA helicase RuvA [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658532|gb|EFX26226.1| Holliday junction DNA helicase RuvA [Escherichia coli O55:H7 str. USDA 5905] gi|320668430|gb|EFX35257.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. LSU-61] gi|323158654|gb|EFZ44668.1| holliday junction DNA helicase RuvA [Escherichia coli E128010] gi|323174753|gb|EFZ60369.1| holliday junction DNA helicase RuvA [Escherichia coli LT-68] gi|323186868|gb|EFZ72187.1| holliday junction DNA helicase RuvA [Escherichia coli RN587/1] gi|323940471|gb|EGB36662.1| Holliday junction DNA helicase RuvA [Escherichia coli E482] gi|323948253|gb|EGB44241.1| Holliday junction DNA helicase RuvA [Escherichia coli H120] gi|323952363|gb|EGB48236.1| Holliday junction DNA helicase RuvA [Escherichia coli H252] gi|323956492|gb|EGB52234.1| Holliday junction DNA helicase RuvA [Escherichia coli H263] gi|323968281|gb|EGB63688.1| Holliday junction DNA helicase RuvA [Escherichia coli M863] gi|323977955|gb|EGB73041.1| Holliday junction DNA helicase RuvA [Escherichia coli TW10509] gi|324007232|gb|EGB76451.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 57-2] gi|324012870|gb|EGB82089.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 60-1] gi|324018004|gb|EGB87223.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 117-3] gi|325496996|gb|EGC94855.1| Holliday junction DNA helicase RuvA [Escherichia fergusonii ECD227] gi|326342241|gb|EGD66022.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. 1044] gi|326343791|gb|EGD67553.1| Holliday junction DNA helicase RuvA [Escherichia coli O157:H7 str. 1125] gi|327252987|gb|EGE64641.1| holliday junction DNA helicase RuvA [Escherichia coli STEC_7v] gi|330911671|gb|EGH40181.1| holliday junction DNA helicase RuvA [Escherichia coli AA86] gi|331039273|gb|EGI11493.1| holliday junction DNA helicase RuvA [Escherichia coli H736] gi|331043182|gb|EGI15320.1| holliday junction DNA helicase RuvA [Escherichia coli M605] gi|331049368|gb|EGI21440.1| holliday junction DNA helicase RuvA [Escherichia coli M718] gi|331056158|gb|EGI28167.1| holliday junction DNA helicase RuvA [Escherichia coli TA206] gi|331069589|gb|EGI40976.1| holliday junction DNA helicase RuvA [Escherichia coli TA280] gi|331074202|gb|EGI45522.1| holliday junction DNA helicase RuvA [Escherichia coli H591] gi|331079582|gb|EGI50779.1| holliday junction DNA helicase RuvA [Escherichia coli H299] gi|332090038|gb|EGI95138.1| holliday junction DNA helicase RuvA [Shigella boydii 5216-82] gi|332096672|gb|EGJ01663.1| holliday junction DNA helicase RuvA [Shigella boydii 3594-74] gi|332343587|gb|AEE56921.1| holliday junction DNA helicase RuvA [Escherichia coli UMNK88] gi|333003565|gb|EGK23105.1| holliday junction DNA helicase RuvA [Shigella flexneri VA-6] gi|333004714|gb|EGK24237.1| holliday junction DNA helicase RuvA [Shigella flexneri K-272] gi|333018434|gb|EGK37732.1| holliday junction DNA helicase RuvA [Shigella flexneri K-227] Length = 203 Score = 189 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 99/204 (48%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + A +IR ALRA Sbjct: 181 VSKIAR---PDASSETLIREALRA 201 >gi|296390675|ref|ZP_06880150.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa PAb1] Length = 201 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 110/205 (53%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGTLAEKQPPHLILDVNGVGYEVEVPMTTLYRLPSVGEPVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFAEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSTLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + ++ ++ + E ++ S +A+SAL+ LG+ +A+ A Sbjct: 121 AERLLVELKDRFKAWQNM--PTIAPLVMEPRGSATVSSAEADAVSALIALGFKPQEASRA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +V ++IR AL+ + Sbjct: 179 VAAVP---GEDLSSEEMIRQALKGM 200 >gi|191168085|ref|ZP_03029884.1| Holliday junction DNA helicase RuvA [Escherichia coli B7A] gi|256017935|ref|ZP_05431800.1| Holliday junction DNA helicase RuvA [Shigella sp. D9] gi|260855801|ref|YP_003229692.1| component of RuvABC resolvasome, regulatory subunit RuvA [Escherichia coli O26:H11 str. 11368] gi|260868396|ref|YP_003234798.1| component of RuvABC resolvasome, regulatory subunit RuvA [Escherichia coli O111:H- str. 11128] gi|300816247|ref|ZP_07096469.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 107-1] gi|300924950|ref|ZP_07140877.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 182-1] gi|301327650|ref|ZP_07220858.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 78-1] gi|307314227|ref|ZP_07593837.1| Holliday junction DNA helicase RuvA [Escherichia coli W] gi|309794242|ref|ZP_07688666.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 145-7] gi|332278969|ref|ZP_08391382.1| holliday junction helicase subunit B [Shigella sp. D9] gi|190901883|gb|EDV61633.1| Holliday junction DNA helicase RuvA [Escherichia coli B7A] gi|257754450|dbj|BAI25952.1| component of RuvABC resolvasome, regulatory subunit RuvA [Escherichia coli O26:H11 str. 11368] gi|257764752|dbj|BAI36247.1| component of RuvABC resolvasome, regulatory subunit RuvA [Escherichia coli O111:H- str. 11128] gi|300418886|gb|EFK02197.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 182-1] gi|300530937|gb|EFK51999.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 107-1] gi|300845798|gb|EFK73558.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 78-1] gi|306906196|gb|EFN36714.1| Holliday junction DNA helicase RuvA [Escherichia coli W] gi|308122147|gb|EFO59409.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 145-7] gi|315061167|gb|ADT75494.1| component of RuvABC resolvasome, regulatory subunit [Escherichia coli W] gi|320198055|gb|EFW72663.1| Holliday junction DNA helicase RuvA [Escherichia coli EC4100B] gi|323152650|gb|EFZ38926.1| holliday junction DNA helicase RuvA [Escherichia coli EPECa14] gi|323180658|gb|EFZ66203.1| holliday junction DNA helicase RuvA [Escherichia coli 1180] gi|323378256|gb|ADX50524.1| Holliday junction DNA helicase RuvA [Escherichia coli KO11] gi|324113597|gb|EGC07572.1| Holliday junction DNA helicase RuvA [Escherichia fergusonii B253] gi|324118921|gb|EGC12810.1| Holliday junction DNA helicase RuvA [Escherichia coli E1167] gi|332101321|gb|EGJ04667.1| holliday junction helicase subunit B [Shigella sp. D9] Length = 203 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 99/204 (48%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPTTDDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + A +IR ALRA Sbjct: 181 VSKIAR---PDASSETLIREALRA 201 >gi|148977429|ref|ZP_01814029.1| Holliday junction DNA helicase motor protein [Vibrionales bacterium SWAT-3] gi|145963381|gb|EDK28646.1| Holliday junction DNA helicase motor protein [Vibrionales bacterium SWAT-3] Length = 203 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 104/205 (50%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI+V GV Y + P+ L +G+ ++ +R+D L Sbjct: 1 MIGRLRGTLIEKQPPELLIEVSGVGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TA++ V+S+ ++ + ++PG+ K Sbjct: 61 YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVQSVEREDISTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + + + + ++ A+SAL+ LGY QA+ Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPATDAAPIDSMPTVHDAEEEAVSALLALGYKPTQASKV 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V K+ Q+IR AL+++ Sbjct: 181 VSQVAKE---GMTSEQLIRDALKSM 202 >gi|74311809|ref|YP_310228.1| Holliday junction DNA helicase RuvA [Shigella sonnei Ss046] gi|90135833|sp|Q3Z2L9|RUVA_SHISS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|73855286|gb|AAZ87993.1| Holliday junction helicase subunit B [Shigella sonnei Ss046] Length = 203 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 100/204 (49%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + + A +IR ALRA Sbjct: 181 VSKIARTD---ASSETLIREALRA 201 >gi|30063272|ref|NP_837443.1| Holliday junction DNA helicase RuvA [Shigella flexneri 2a str. 2457T] gi|30041524|gb|AAP17252.1| Holliday junction helicase subunit B [Shigella flexneri 2a str. 2457T] gi|313650643|gb|EFS15045.1| holliday junction DNA helicase RuvA [Shigella flexneri 2a str. 2457T] gi|332757632|gb|EGJ87965.1| holliday junction DNA helicase RuvA [Shigella flexneri 2747-71] gi|332758049|gb|EGJ88375.1| holliday junction DNA helicase RuvA [Shigella flexneri K-671] gi|333004779|gb|EGK24301.1| holliday junction DNA helicase RuvA [Shigella flexneri K-218] gi|333018630|gb|EGK37924.1| holliday junction DNA helicase RuvA [Shigella flexneri K-304] Length = 203 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 98/204 (48%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + +IR ALRA Sbjct: 181 VSKIAR---PDTSSETLIREALRA 201 >gi|301645623|ref|ZP_07245552.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 146-1] gi|301076155|gb|EFK90961.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 146-1] Length = 203 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 99/204 (48%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + A +IR ALRA Sbjct: 181 VSKIAR---PDASSESLIREALRA 201 >gi|261340247|ref|ZP_05968105.1| holliday junction DNA helicase RuvA [Enterobacter cancerogenus ATCC 35316] gi|288317332|gb|EFC56270.1| holliday junction DNA helicase RuvA [Enterobacter cancerogenus ATCC 35316] Length = 203 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 59/204 (28%), Positives = 100/204 (49%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++V GV Y ++ P+ L G +F + +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLEVGGVGYEVHMPMTCFYELPDAGKEAIVFTQFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ ++ + ++PGI K Sbjct: 61 YGFNNKQERMLFRELIKTNGVGPKLALAILSGMSAPQFVNAVEREDPAALIKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + S A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPGAPSSDDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V V K A +IR ALRA Sbjct: 181 VSKVAK---PDAGSETLIREALRA 201 >gi|15596163|ref|NP_249657.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa PAO1] gi|107100423|ref|ZP_01364341.1| hypothetical protein PaerPA_01001448 [Pseudomonas aeruginosa PACS2] gi|116048891|ref|YP_792308.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa UCBPP-PA14] gi|152985106|ref|YP_001349891.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa PA7] gi|218893063|ref|YP_002441932.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa LESB58] gi|254239314|ref|ZP_04932637.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa C3719] gi|254245249|ref|ZP_04938571.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa 2192] gi|313105853|ref|ZP_07792116.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa 39016] gi|2498872|sp|Q51425|RUVA_PSEAE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|122257998|sp|Q02IC8|RUVA_PSEAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230585|sp|A6VA06|RUVA_PSEA7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226725446|sp|B7UXW6|RUVA_PSEA8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|9946873|gb|AAG04355.1|AE004530_8 Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa PAO1] gi|1183841|dbj|BAA11818.1| Holliday junction binding protein [Pseudomonas aeruginosa] gi|115584112|gb|ABJ10127.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa UCBPP-PA14] gi|126171245|gb|EAZ56756.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa C3719] gi|126198627|gb|EAZ62690.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa 2192] gi|150960264|gb|ABR82289.1| holliday junction DNA helicase RuvA [Pseudomonas aeruginosa PA7] gi|218773291|emb|CAW29103.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa LESB58] gi|310878618|gb|EFQ37212.1| Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa 39016] Length = 201 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 110/205 (53%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGTLAEKQPPHLILDVNGVGYEVEVPMTTLYRLPSVGEPVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFAEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSTLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + ++ ++ + E ++ S +A+SAL+ LG+ +A+ A Sbjct: 121 AERLLVELKDRFKAWENM--PTIAPLVMEPRASATVSSAEADAVSALIALGFKPQEASRA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +V ++IR AL+ + Sbjct: 179 VAAVP---GEDLSSEEMIRQALKGM 200 >gi|297170981|gb|ADI21996.1| holliday junction resolvasome, DNA-binding subunit [uncultured myxobacterium HF0200_01L06] Length = 202 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 107/206 (51%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + +++DV GV Y + P+ T + L G +L+V TH+R+D L Sbjct: 1 MIARLEGTLFEKTPTRIVVDVSGVGYELSVPLSTFATLPDEGKTVSLWVHTHVREDAFLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F LL VG R+A +LS I L +++ + KV+ +PGI K+ Sbjct: 61 YGFATTRERDVFHLLLRANRVGPRLAQTILSGIDPAALCDALGRGDVKVLRGVPGIGPKM 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ A L+ + + P A A+SAL+NLGY + +A Sbjct: 121 AERMVVELRDAASELAGALGSAGPSEGR-----PVRPDPAEEALSALLNLGYPRSKAERT 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + + A Q+IR ALR++S Sbjct: 176 IEAAIGETGEDASIEQVIRAALRSLS 201 >gi|170769415|ref|ZP_02903868.1| Holliday junction DNA helicase RuvA [Escherichia albertii TW07627] gi|170121739|gb|EDS90670.1| Holliday junction DNA helicase RuvA [Escherichia albertii TW07627] Length = 203 Score = 188 bits (477), Expect = 4e-46, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++V GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEPAALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPATDLVLTSPASPATEDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + A +IR ALRA Sbjct: 181 VSKIAR---PDASSETLIREALRA 201 >gi|269967685|ref|ZP_06181735.1| Holliday junction DNA helicase motor protein [Vibrio alginolyticus 40B] gi|269827772|gb|EEZ82056.1| Holliday junction DNA helicase motor protein [Vibrio alginolyticus 40B] Length = 234 Score = 187 bits (476), Expect = 5e-46, Method: Composition-based stats. Identities = 53/204 (25%), Positives = 98/204 (48%), Gaps = 3/204 (1%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 IG+++G + VLI+V G+ Y + P+ L +G+ ++ +R+D L+ Sbjct: 33 IGRLRGILIEKQPPEVLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLLY 92 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF + +R F + GVG ++ +G+LS +TAT+ V + ++ + ++PG+ K A Sbjct: 93 GFNTVKERALFREVIKANGVGPKLGLGILSGMTATQFVTCVEHEDVSTLVKLPGVGKKTA 152 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 R++ E+K + + + + AISAL+ LGY QA+ V Sbjct: 153 ERLVVEMKDRLKGWGAGDLFTPFTDAAPADSSATSNNAEEEAISALLALGYKPTQASKVV 212 Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205 + K Q+IR AL+++ Sbjct: 213 SQIAK---PDMSSEQMIREALKSM 233 >gi|229592301|ref|YP_002874420.1| Holliday junction DNA helicase RuvA [Pseudomonas fluorescens SBW25] gi|312962759|ref|ZP_07777247.1| Holliday junction ATP-dependent DNA helicase [Pseudomonas fluorescens WH6] gi|259495652|sp|C3JYS8|RUVA_PSEFS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229364167|emb|CAY51821.1| holliday junction helicase subunit B [Pseudomonas fluorescens SBW25] gi|311282976|gb|EFQ61569.1| Holliday junction ATP-dependent DNA helicase [Pseudomonas fluorescens WH6] Length = 203 Score = 187 bits (476), Expect = 5e-46, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 109/205 (53%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV G+ Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGTLAEKQPPHLILDVNGLGYELEVPMTTLYRLPSVGEPITLHTHLVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ DR +F L + GVG ++A+ ++S + ELV ++ Q++ + ++PG+ K Sbjct: 61 YGFIGKRDRDFFRELIRLNGVGPKLALALMSSLEVDELVRAVSAQDTSALTKVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + V N+ + S +A+SAL++LGY +A+ A Sbjct: 121 AERLLVELKDRFKAWEVVPSMFALVPNQPDMPAGQVASAESDAVSALISLGYKPQEASKA 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ K +IR AL+ + Sbjct: 181 VSAIKDKN---LSSEDMIRRALKGM 202 >gi|24113211|ref|NP_707721.1| Holliday junction DNA helicase RuvA [Shigella flexneri 2a str. 301] gi|110805805|ref|YP_689325.1| Holliday junction DNA helicase RuvA [Shigella flexneri 5 str. 8401] gi|44888467|sp|Q83KR4|RUVA_SHIFL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|123342783|sp|Q0T3U5|RUVA_SHIF8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|24052207|gb|AAN43428.1| Holliday junction helicase subunit B [Shigella flexneri 2a str. 301] gi|110615353|gb|ABF04020.1| Holliday junction helicase [Shigella flexneri 5 str. 8401] Length = 203 Score = 187 bits (476), Expect = 5e-46, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 98/204 (48%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGPLVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + +IR ALRA Sbjct: 181 VSKIAR---PDTSSETLIREALRA 201 >gi|77460629|ref|YP_350136.1| Holliday junction DNA helicase RuvA [Pseudomonas fluorescens Pf0-1] gi|90135610|sp|Q3K7V9|RUVA_PSEPF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|77384632|gb|ABA76145.1| holliday junction helicase subunit B [Pseudomonas fluorescens Pf0-1] Length = 202 Score = 187 bits (476), Expect = 6e-46, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 108/205 (52%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV G+ Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGTLAEKQPPHLILDVNGLGYELEVPMTTLYRLPSVGEPLTLHTHLVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R +F L + GVG ++A+ ++S + EL+ + Q++ + ++PG+ K Sbjct: 61 YGFAGKRERDFFRELIRLNGVGPKLALALMSSLEVDELIRCVQSQDTSALTKVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + + V + + + +A+SAL++LGY +A+ A Sbjct: 121 AERLLVELKNRFKAW-ETSPAMFALVPNQPDGPAPVNTAENDAVSALISLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ +K +IR AL+ + Sbjct: 180 ISAIKEK---GLSSEDMIRRALKGM 201 >gi|82776447|ref|YP_402796.1| Holliday junction DNA helicase RuvA [Shigella dysenteriae Sd197] gi|309789257|ref|ZP_07683850.1| holliday junction DNA helicase RuvA [Shigella dysenteriae 1617] gi|90135814|sp|Q32HA0|RUVA_SHIDS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|81240595|gb|ABB61305.1| Holliday junction helicase subunit B [Shigella dysenteriae Sd197] gi|308923011|gb|EFP68525.1| holliday junction DNA helicase RuvA [Shigella dysenteriae 1617] Length = 203 Score = 187 bits (476), Expect = 6e-46, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 98/204 (48%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + +IR ALRA Sbjct: 181 VSKIAR---PDVSSETLIREALRA 201 >gi|194433948|ref|ZP_03066220.1| Holliday junction DNA helicase RuvA [Shigella dysenteriae 1012] gi|194417820|gb|EDX33917.1| Holliday junction DNA helicase RuvA [Shigella dysenteriae 1012] gi|332095232|gb|EGJ00259.1| holliday junction DNA helicase RuvA [Shigella dysenteriae 155-74] Length = 203 Score = 187 bits (476), Expect = 6e-46, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 99/204 (48%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYVLPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + A +IR ALRA Sbjct: 181 VSKIAR---PDASSETLIREALRA 201 >gi|92113970|ref|YP_573898.1| Holliday junction DNA helicase subunit RuvA [Chromohalobacter salexigens DSM 3043] gi|91797060|gb|ABE59199.1| Holliday junction DNA helicase subunit RuvA [Chromohalobacter salexigens DSM 3043] Length = 206 Score = 187 bits (476), Expect = 6e-46, Method: Composition-based stats. Identities = 52/207 (25%), Positives = 98/207 (47%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV GV Y + + TL L G+ L +R+D L Sbjct: 3 MIGRLRGTLLEKQPPWIVVDVGGVGYELETSMTTLLALPGPGEEVQLHTHLAVREDAHLL 62 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +RQ F L V GVG ++A+ +LS + + ++ + K + ++PG+ K Sbjct: 63 YGFARGDERQLFRALIKVNGVGPKLALAILSGMDQEAFIRCVMEDDIKALTRLPGVGKKT 122 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ + + + + + + P +A SALV LGY +A+ Sbjct: 123 AERLVVEMRDRFPHWQLEQENGLHALELGASPTTAAPDPQADAESALVALGYKPTEASRM 182 Query: 181 VVSVLKKEKNIADDSQIIRLAL-RAIS 206 L + +I+ AL R ++ Sbjct: 183 ----LSGLDDGLSTEGLIKAALARKLA 205 >gi|194439064|ref|ZP_03071147.1| Holliday junction DNA helicase RuvA [Escherichia coli 101-1] gi|253773182|ref|YP_003036013.1| Holliday junction DNA helicase RuvA [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161921|ref|YP_003045029.1| Holliday junction DNA helicase RuvA [Escherichia coli B str. REL606] gi|300928892|ref|ZP_07144397.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 187-1] gi|194422023|gb|EDX38027.1| Holliday junction DNA helicase RuvA [Escherichia coli 101-1] gi|242377582|emb|CAQ32337.1| branch migration of Holliday structures; repair, subunit of resolvasome [Escherichia coli BL21(DE3)] gi|253324226|gb|ACT28828.1| Holliday junction DNA helicase RuvA [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973822|gb|ACT39493.1| Holliday junction DNA helicase motor protein [Escherichia coli B str. REL606] gi|253978016|gb|ACT43686.1| Holliday junction DNA helicase motor protein [Escherichia coli BL21(DE3)] gi|300463120|gb|EFK26613.1| Holliday junction DNA helicase RuvA [Escherichia coli MS 187-1] gi|323961916|gb|EGB57515.1| Holliday junction DNA helicase RuvA [Escherichia coli H489] gi|323972631|gb|EGB67834.1| Holliday junction DNA helicase RuvA [Escherichia coli TA007] Length = 203 Score = 187 bits (476), Expect = 6e-46, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 98/204 (48%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y + P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVLMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATNDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + A +IR ALRA Sbjct: 181 VSKIAR---PDASSETLIREALRA 201 >gi|119504258|ref|ZP_01626338.1| Holliday junction DNA helicase motor protein [marine gamma proteobacterium HTCC2080] gi|119459766|gb|EAW40861.1| Holliday junction DNA helicase motor protein [marine gamma proteobacterium HTCC2080] Length = 209 Score = 187 bits (475), Expect = 7e-46, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 101/204 (49%), Gaps = 2/204 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + +L+DV G+ Y + P+ TL L ++G+ TL +R+D L Sbjct: 1 MIGYLRGRLIVKRPPELLVDVGGIGYELQVPMTTLFDLPEVGEEVTLLTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + DR+ F L V GVG ++A+ +LS + A + + + + +PG+ K Sbjct: 61 YGFREEADRRLFRELIKVSGVGPKLALALLSGLDARAFAQCLQRDDVATLVALPGVGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ KA + + + + A ALV LGY +A+ Sbjct: 121 AERLLVEMRDKAGKWLEELSPAIPGTQGQFVSVAPAMDSRTEAEQALVALGYKLPEASRL 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V +V +++I ++IR AL+A Sbjct: 181 VAAV--DDESIESSEELIRRALKA 202 >gi|29654859|ref|NP_820551.1| Holliday junction DNA helicase RuvA [Coxiella burnetii RSA 493] gi|153208743|ref|ZP_01946981.1| Holliday junction DNA helicase RuvA [Coxiella burnetii 'MSU Goat Q177'] gi|161831144|ref|YP_001597405.1| Holliday junction DNA helicase RuvA [Coxiella burnetii RSA 331] gi|165918688|ref|ZP_02218774.1| Holliday junction DNA helicase RuvA [Coxiella burnetii RSA 334] gi|212219280|ref|YP_002306067.1| Holliday junction DNA helicase RuvA [Coxiella burnetii CbuK_Q154] gi|44888458|sp|Q83BE2|RUVA_COXBU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189045751|sp|A9N9A2|RUVA_COXBR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226698727|sp|B6J505|RUVA_COXB1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|29542128|gb|AAO91065.1| holliday junction DNA helicase [Coxiella burnetii RSA 493] gi|120575775|gb|EAX32399.1| Holliday junction DNA helicase RuvA [Coxiella burnetii 'MSU Goat Q177'] gi|161763011|gb|ABX78653.1| Holliday junction DNA helicase RuvA [Coxiella burnetii RSA 331] gi|165917623|gb|EDR36227.1| Holliday junction DNA helicase RuvA [Coxiella burnetii RSA 334] gi|212013542|gb|ACJ20922.1| holliday junction DNA helicase [Coxiella burnetii CbuK_Q154] Length = 200 Score = 187 bits (475), Expect = 7e-46, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 99/205 (48%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G I Y+L++V GV Y I P+ T L + + L+ +R+D L Sbjct: 1 MIGHLRGIIVEKQPPYLLLEVAGVGYEITAPLSTFYHLPEPQEEILLYTHLIVREDAHTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +D +R+ F L V GVG ++A+ +LS I E V ++ QN + +IPG+ K Sbjct: 61 YGFHNDHERRLFRALIKVNGVGPKLALAILSGIGPDEFVHCVLNQNIDQLVRIPGVGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E K + + S +AISAL+ LGY +A A Sbjct: 121 AERLVIETKDGLSRWH------TNDTPSPEGLRSSNTQPTQDAISALMALGYKPQEAKRA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ K +IRLAL+ + Sbjct: 175 IDAIQK---PDLSAETLIRLALKQM 196 >gi|330975328|gb|EGH75394.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 202 Score = 187 bits (475), Expect = 8e-46, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 114/205 (55%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G++ ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGSLAEKQPPHLVLDVNGVGYEVEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + S + + V+ + S +A+SAL++LG +A+ A Sbjct: 121 AERLLVELKDRFKAWES-LPGTFTLVSNGPNQAEPVASAESDAVSALISLGNKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ +K+ + AD +IR AL+ + Sbjct: 180 VSAIKEKDLSSAD---LIRRALKGM 201 >gi|27365489|ref|NP_761017.1| Holliday junction DNA helicase RuvA [Vibrio vulnificus CMCP6] gi|161486619|ref|NP_935078.2| Holliday junction DNA helicase motor protein [Vibrio vulnificus YJ016] gi|320155872|ref|YP_004188251.1| Holliday junction DNA helicase RuvA [Vibrio vulnificus MO6-24/O] gi|29611844|sp|Q8DAN4|RUVA_VIBVU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|44888369|sp|Q7MJ77|RUVA_VIBVY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|27361637|gb|AAO10544.1| Holliday junction DNA helicase RuvA [Vibrio vulnificus CMCP6] gi|319931184|gb|ADV86048.1| holliday junction DNA helicase RuvA [Vibrio vulnificus MO6-24/O] Length = 204 Score = 187 bits (474), Expect = 8e-46, Method: Composition-based stats. Identities = 54/206 (26%), Positives = 102/206 (49%), Gaps = 4/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI+V G+ Y + P+ L IG+ ++ +R+D L Sbjct: 1 MIGRLRGILLEKQPPELLIEVNGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ + +LS +TA++ V S+ ++ + ++PG+ K Sbjct: 61 YGFNTVKERALFREVIKANGVGPKLGLAILSGMTASQFVASVEREDISTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + + + + + S S A+SAL+ LGY QA+ Sbjct: 121 AERLVVEMKDRLKGWSAGDLFTPFTDAAPVDSGSTSSNSAEEEAVSALLALGYKPVQASK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 V + K Q+IR AL+++ Sbjct: 181 VVSQIAK---PDMTSEQLIREALKSM 203 >gi|330811393|ref|YP_004355855.1| Holliday junction ATP-dependent DNA helicase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379501|gb|AEA70851.1| Holliday junction ATP-dependent DNA helicase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 202 Score = 187 bits (474), Expect = 9e-46, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 109/205 (53%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV G+ Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGTLAEKQPPHLILDVNGLGYELEVPMTTLYRLPSVGEPLTLHTHLVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ +R +F L + GVG ++A+ ++S + ELV + Q++ + ++PG+ K Sbjct: 61 YGFVGKRERDFFRELIRLNGVGPKLALALMSSLEVDELVRCVQSQDTSALTKVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + V + V + S +A++AL++LGY +A+ A Sbjct: 121 AERLLVELKDRFKAW-EAVPAMFALVPNQPDAPAPAVSAESDAVTALISLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ +K +IR AL+ + Sbjct: 180 ISAIKEK---GLSTEDMIRRALKGM 201 >gi|311279238|ref|YP_003941469.1| Holliday junction DNA helicase RuvA [Enterobacter cloacae SCF1] gi|308748433|gb|ADO48185.1| Holliday junction DNA helicase RuvA [Enterobacter cloacae SCF1] Length = 203 Score = 187 bits (474), Expect = 9e-46, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 99/204 (48%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L G +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLEAGGVGYEVHMPMTCFYELPDQGKEAIIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L GVG ++A+ +LS ++A + V ++ ++ + ++PGI K Sbjct: 61 FGFNNKQERTLFRELIKTNGVGPKLALAILSGMSAAQFVNAVEREDPAALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPAADDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + + + A+ +IR ALRA Sbjct: 181 ISKIAR---PDANSETLIREALRA 201 >gi|149191831|ref|ZP_01870068.1| Holliday junction DNA helicase motor protein [Vibrio shilonii AK1] gi|148834349|gb|EDL51349.1| Holliday junction DNA helicase motor protein [Vibrio shilonii AK1] Length = 205 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 99/207 (47%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI+V GV Y I P+ L +IG ++ +R+D L Sbjct: 1 MIGRLRGTLIEKQPPELLIEVGGVGYEIQMPMSCFYELPEIGQEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS ++AT+ V + ++ + ++PG+ K Sbjct: 61 YGFNTVRERALFREVIKANGVGPKLGLGILSGMSATQFVACVEREDISTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + + + + + A+SAL+ LGY QA+ Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPATDAAPVDSVGAMNADNAEEEAVSALLALGYKPTQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 V V K +IR ALRA+ Sbjct: 181 KVVSQVAK---PDMTSEALIREALRAM 204 >gi|218548578|ref|YP_002382369.1| Holliday junction DNA helicase RuvA [Escherichia fergusonii ATCC 35469] gi|226725445|sp|B7LPI3|RUVA_ESCF3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|218356119|emb|CAQ88736.1| component of RuvABC resolvasome, regulatory subunit [Escherichia fergusonii ATCC 35469] Length = 203 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 55/202 (27%), Positives = 97/202 (48%), Gaps = 3/202 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 V + + A +IR AL Sbjct: 181 VSKIAR---PDASSETLIREAL 199 >gi|192360858|ref|YP_001981526.1| Holliday junction DNA helicase RuvA [Cellvibrio japonicus Ueda107] gi|229560014|sp|B3PB58|RUVA_CELJU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|190687023|gb|ACE84701.1| Holliday junction DNA helicase RuvA [Cellvibrio japonicus Ueda107] Length = 205 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 101/206 (49%), Gaps = 3/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++KG + Y+L+DV GV Y + P+ T L +G L + ++ +L Sbjct: 1 MIGRLKGILIEKQPPYLLLDVNGVGYELQAPMTTFYRLPSLGHEVVLHTHLSITENLHQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L V GVG ++A+ +LS + + ++ + N K + ++PGI K Sbjct: 61 FGFAEQRDRSLFRTLIKVNGVGPKLAVAILSGMESDDIARCVRDNNIKALTRVPGIGQKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ + + ++ + I S A SAL+ LGY A Sbjct: 121 AERLVIELRDRLKNWDLPQGDMLAHGEIQA--IASDNDIYAEAESALIALGYKPVDAAKM 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V S K++ ++IR+ALR+++ Sbjct: 179 VASAAKQKPEARS-EELIRIALRSLA 203 >gi|146312076|ref|YP_001177150.1| Holliday junction DNA helicase RuvA [Enterobacter sp. 638] gi|167012660|sp|A4WBL9|RUVA_ENT38 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|145318952|gb|ABP61099.1| Holliday junction DNA helicase subunit RuvA [Enterobacter sp. 638] Length = 203 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 101/204 (49%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L G +F + +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLETGGVGYEVHMPMTCFYELPDAGKEAIIFTQFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ ++ + ++PGI K Sbjct: 61 YGFNNKQERMLFRELIKTNGVGPKLALAILSGMSAHQFVNAVEREDPAALIKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPNGPTSDDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + K A+ +IR ALRA Sbjct: 181 VSKIAK---PDANSETLIREALRA 201 >gi|283785600|ref|YP_003365465.1| holliday junction ATP-dependent DNA helicase [Citrobacter rodentium ICC168] gi|282949054|emb|CBG88657.1| holliday junction ATP-dependent DNA helicase [Citrobacter rodentium ICC168] Length = 203 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 100/204 (49%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLEAGGVGYEVHMPMTCFYELPESGKEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ ++ + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREDPAALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + ++ A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPAVEDGEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V V + A +IR ALRA Sbjct: 181 VSKVAR---PDASSETLIREALRA 201 >gi|154707705|ref|YP_001423840.1| Holliday junction DNA helicase RuvA [Coxiella burnetii Dugway 5J108-111] gi|189045750|sp|A9KF41|RUVA_COXBN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|154356991|gb|ABS78453.1| holliday junction DNA helicase [Coxiella burnetii Dugway 5J108-111] Length = 200 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 98/205 (47%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G I Y+L++V GV Y I P+ T L + L+ +R+D L Sbjct: 1 MIGHLRGIIVEKQPPYLLLEVAGVGYEITAPLSTFYHLPEPQKEILLYTHLIVREDAHTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +D +R+ F L V GVG ++A+ +LS I E V ++ QN + +IPG+ K Sbjct: 61 YGFHNDHERRLFRALIKVNGVGPKLALAILSGIGPDEFVHCVLNQNIDQLVRIPGVGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E K + + S +AISAL+ LGY +A A Sbjct: 121 AERLVIETKDGLSRWH------TNDTPSPEGLRSSNTQPTQDAISALMALGYKPQEAKRA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ K +IRLAL+ + Sbjct: 175 IDAIQK---PDLSAETLIRLALKQM 196 >gi|220935403|ref|YP_002514302.1| DNA recombination protein, RuvA [Thioalkalivibrio sp. HL-EbGR7] gi|254767396|sp|B8GUJ5|RUVA_THISH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|219996713|gb|ACL73315.1| DNA recombination protein, RuvA [Thioalkalivibrio sp. HL-EbGR7] Length = 201 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 69/204 (33%), Positives = 110/204 (53%), Gaps = 6/204 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++L+DVQGV Y I P+ T L + G TL H+R+D L Sbjct: 1 MIGRLRGELVSKQPPFLLLDVQGVGYEIEAPLSTFYDLPEPGGQVTLHTHLHVREDAHVL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +R F L V GVGA++A+ +LS +TA+E ++ + + ++PGI K Sbjct: 61 YGFASESERALFRSLIKVTGVGAKMALAILSGMTASEFSRCVMDGDVASLVRLPGIGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ + SL + V K A P +A+SALV+LGY +A+ Sbjct: 121 AERLVVEMRDRLGSLPAAVTL---TGGKPAAAAARAPDPVSDAVSALVSLGYKPQEASRL 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + +V E +IRLAL+A Sbjct: 178 ISAV---EGEAERSEDLIRLALKA 198 >gi|153832528|ref|ZP_01985195.1| holliday junction DNA helicase RuvA [Vibrio harveyi HY01] gi|148871323|gb|EDL70195.1| holliday junction DNA helicase RuvA [Vibrio harveyi HY01] Length = 223 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 101/205 (49%), Gaps = 4/205 (1%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 IG+++G + VLI+V G+ Y + P+ L +G+ ++ +R+D L+ Sbjct: 21 IGRLRGTLLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLLY 80 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF + +R F + GVG ++ +G+LS +TA++ V + ++ + ++PG+ K A Sbjct: 81 GFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDISTLVKLPGVGKKTA 140 Query: 122 SRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 R++ E+K + + + + + + + AISAL+ LGY QA+ Sbjct: 141 ERLVVEMKDRLKGWGAGDLFTPFTDAAPADSGSAASNNAEEEAISALLALGYKPTQASKV 200 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + K Q+IR AL+++ Sbjct: 201 VSQIAK---PDMTSEQLIREALKSM 222 >gi|323496589|ref|ZP_08101642.1| Holliday junction DNA helicase RuvA [Vibrio sinaloensis DSM 21326] gi|323318335|gb|EGA71293.1| Holliday junction DNA helicase RuvA [Vibrio sinaloensis DSM 21326] Length = 205 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 53/207 (25%), Positives = 103/207 (49%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI+V G+ Y + P+ L +G+ ++ +R+D L Sbjct: 1 MIGRLRGILIEKQPPELLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TA++ V S+ ++ + ++PG+ K Sbjct: 61 YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVASVEREDISTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + + + A S A+SAL++LGY QA+ Sbjct: 121 AERLVVEMKDRLKGWSAGDLFTPFTDAAPVDSAPEVVQSSAEEEAVSALLSLGYKPTQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 V +L+ ++IR AL+++ Sbjct: 181 KVVSQILQ---PGMSSEELIREALKSM 204 >gi|269963130|ref|ZP_06177465.1| Holliday junction DNA helicase motor protein [Vibrio harveyi 1DA3] gi|269832094|gb|EEZ86218.1| Holliday junction DNA helicase motor protein [Vibrio harveyi 1DA3] Length = 223 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 100/205 (48%), Gaps = 4/205 (1%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 IG+++G + VLI+V G+ Y + P+ L +G+ ++ +R+D L+ Sbjct: 21 IGRLRGTLLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLLY 80 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF + +R F + GVG ++ +G+LS +TA++ V + ++ + ++PG+ K A Sbjct: 81 GFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDISTLVKLPGVGKKTA 140 Query: 122 SRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 R++ E+K + + + + + + AISAL+ LGY QA+ Sbjct: 141 ERLVVEMKDRLKGWGAGDLFTPFTDAAPADSGSAGSNNAEEEAISALLALGYKPTQASKV 200 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + K Q+IR AL+++ Sbjct: 201 VSQIAK---PDMTSEQLIREALKSM 222 >gi|156973890|ref|YP_001444797.1| Holliday junction DNA helicase motor protein [Vibrio harveyi ATCC BAA-1116] gi|156525484|gb|ABU70570.1| hypothetical protein VIBHAR_01600 [Vibrio harveyi ATCC BAA-1116] Length = 223 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 101/205 (49%), Gaps = 4/205 (1%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 IG+++G + VLI+V G+ Y + P+ L +G+ ++ +R+D L+ Sbjct: 21 IGRLRGTLLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLLY 80 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF + +R F + GVG ++ +G+LS +TA++ V + ++ + ++PG+ K A Sbjct: 81 GFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDISTLVKLPGVGKKTA 140 Query: 122 SRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 R++ E+K + + + + + + + AISAL+ LGY QA+ Sbjct: 141 ERLVVEMKDRLKGWGAGDLFTPFTDAAPADSGSAASNNAEEEAISALLALGYKPTQASKV 200 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + K Q+IR AL+++ Sbjct: 201 VSQIAK---PDMTSEQLIRKALKSM 222 >gi|56460194|ref|YP_155475.1| Holliday junction resolvasome, DNA-binding subunit [Idiomarina loihiensis L2TR] gi|81363131|sp|Q5QYU4|RUVA_IDILO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|56179204|gb|AAV81926.1| Holliday junction resolvasome, DNA-binding subunit [Idiomarina loihiensis L2TR] Length = 205 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 64/208 (30%), Positives = 107/208 (51%), Gaps = 5/208 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG I+G + V++DVQG+ Y I P+ L +G+ L +R+D L Sbjct: 1 MIGHIQGVLTSKQPPEVVLDVQGIGYEIQLPMTCFYQLPPVGETIKLITHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+S +R F LL QGVG ++A+ +LS ++A E V ++ + + ++PG+ K Sbjct: 61 YGFISASERSLFRLLLKTQGVGPKLALAILSGMSADEFVMAVNQNDVTRLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQ-QDMSCVNKEQAHICSMP-SFAINAISALVNLGYGQDQAT 178 A R++ E++ + D + ++ + P +AISAL +LGY ++QA Sbjct: 121 AERLVIEMRDRLKDWQPSTPFTDRAPLDSQGMDAREHPADARTDAISALQSLGYKENQAE 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ V E N +IRLAL+ +S Sbjct: 181 KALQKVYSAEHNS---ETLIRLALKQLS 205 >gi|323495172|ref|ZP_08100257.1| Holliday junction DNA helicase RuvA [Vibrio brasiliensis LMG 20546] gi|323310612|gb|EGA63791.1| Holliday junction DNA helicase RuvA [Vibrio brasiliensis LMG 20546] Length = 205 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 104/207 (50%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI+V G+ Y + P+ L IG+ ++ +R+D L Sbjct: 1 MIGRLRGILIEKQPPELLIEVNGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TA++ V S+ ++ + ++PG+ K Sbjct: 61 YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVASVEREDVSTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + + + A S S A+SAL+ LGY QA+ Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPYTDAAPVDSAVQASQSSAEEEAVSALLALGYKPTQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 V V+K E Q+IR AL+++ Sbjct: 181 KVVSQVMKPE---MTSEQLIREALKSM 204 >gi|114047572|ref|YP_738122.1| Holliday junction DNA helicase RuvA [Shewanella sp. MR-7] gi|117920401|ref|YP_869593.1| Holliday junction DNA helicase RuvA [Shewanella sp. ANA-3] gi|123326531|sp|Q0HUZ0|RUVA_SHESR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166200264|sp|A0KWL8|RUVA_SHESA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|113889014|gb|ABI43065.1| Holliday junction DNA helicase RuvA [Shewanella sp. MR-7] gi|117612733|gb|ABK48187.1| Holliday junction DNA helicase RuvA [Shewanella sp. ANA-3] Length = 205 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 113/207 (54%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLIDV GV Y + P+ + L ++ T++ +R+D L Sbjct: 1 MIGRLRGVLIEKQAPEVLIDVNGVGYELQMPLTSFYELPEVNQPTTVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ +R F LL GVG ++A+ +LS +TA+E V + + + ++PG+ K Sbjct: 61 YGFITKQERSLFRLLIKANGVGPKLALTILSGMTASEFVGCVERDDIVTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E++ K SL +SV + + + ++ S +AISAL++LGY QA+ Sbjct: 121 AERLLVEMRDKLKSLMEASVGSEREFVLQSNYSPAPTVNSAEEDAISALISLGYKPPQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 AV + K+ D +I+ AL+++ Sbjct: 181 KAVSAAYKE---GMDSETLIKAALKSM 204 >gi|91793239|ref|YP_562890.1| Holliday junction DNA helicase RuvA [Shewanella denitrificans OS217] gi|122968746|sp|Q12N09|RUVA_SHEDO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|91715241|gb|ABE55167.1| Holliday junction DNA helicase RuvA [Shewanella denitrificans OS217] Length = 203 Score = 186 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 107/205 (52%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + + +++DV GV Y + P+ + L ++ TL+ +R+D L Sbjct: 1 MIGRLNGILVEKHAPEIVLDVGGVGYELQVPMTSFYELPELEQSATLYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ +R F LL GVG ++A+ +LS +TA E V + + + ++PG+ K Sbjct: 61 YGFITKQERALFRLLIKTNGVGPKLALTILSGMTAGEFVSCVERDDIVTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ K SL + + + + +AISALV+LGY QA+ A Sbjct: 121 AERLVVEMRDKLKSLLEASVGNEREFMLQTNYTAPAANAEEDAISALVSLGYKPPQASRA 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V K+ D +I+LAL+++ Sbjct: 181 VSKAYKE---GMDTETLIKLALKSM 202 >gi|113970239|ref|YP_734032.1| Holliday junction DNA helicase RuvA [Shewanella sp. MR-4] gi|123029678|sp|Q0HIZ2|RUVA_SHESM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|113884923|gb|ABI38975.1| Holliday junction DNA helicase RuvA [Shewanella sp. MR-4] Length = 205 Score = 186 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 113/207 (54%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLIDV GV Y + P+ + L ++ T++ +R+D L Sbjct: 1 MIGRLRGVLIEKQAPEVLIDVNGVGYELQMPLTSFYELPEVNQPTTVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ +R F LL GVG ++A+ +LS +TA+E V + + + ++PG+ K Sbjct: 61 YGFITKKERSLFRLLIKANGVGPKLALTILSGMTASEFVGCVERDDIVTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E++ K SL +SV + + + ++ S +AISAL++LGY QA+ Sbjct: 121 AERLLVEMRDKLKSLMEASVGSEREFVLQSNYSPAPTVNSAEEDAISALLSLGYKPPQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 AV + K+ D +I+ AL+++ Sbjct: 181 KAVSAAYKE---GMDSETLIKAALKSM 204 >gi|296101800|ref|YP_003611946.1| Holliday junction DNA helicase RuvA [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056259|gb|ADF60997.1| Holliday junction DNA helicase RuvA [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 204 Score = 186 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 100/205 (48%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++V GV Y ++ P+ L G +F + +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLLEVGGVGYEVHMPMTCFYELPDAGKEAIVFTQFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ ++ + ++PGI K Sbjct: 61 YGFNNKQERTLFRELIKTNGVGPKLALAILSGMSAQQFVNAVEREDPAALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSC-VNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + L + + V S A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPGAPVSDDDAEQEAVAALVALGYKPQEASR 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V + K A +IR ALRA Sbjct: 181 MVSKIAK---PDASSETLIREALRA 202 >gi|24373977|ref|NP_718020.1| Holliday junction DNA helicase RuvA [Shewanella oneidensis MR-1] gi|38372487|sp|Q8EEF2|RUVA_SHEON RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|24348428|gb|AAN55464.1|AE015684_1 Holliday junction DNA helicase RuvA [Shewanella oneidensis MR-1] Length = 205 Score = 186 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 112/207 (54%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLIDV GV Y + P+ + L ++ T++ +R+D L Sbjct: 1 MIGRLRGVLIEKQAPEVLIDVNGVGYELQMPLTSFYELPELNQPTTVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ +R F LL GVG ++A+ +LS +TA+E V + + + ++PG+ K Sbjct: 61 YGFITKQERSLFRLLIKANGVGPKLALTILSGMTASEFVGCVERDDIVTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E++ K SL +SV + + + + S +AISAL++LGY QA+ Sbjct: 121 AERLLVEMRDKLKSLMEASVGSEREFVLQSNYSPAPVVNSAEEDAISALISLGYKPPQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 AV + K+ D +I+ AL+++ Sbjct: 181 KAVSAAFKE---GMDSETLIKAALKSM 204 >gi|157830735|pdb|1CUK|A Chain A, Escherichia Coli Ruva Protein At Ph 4.9 And Room Temperature gi|581226|emb|CAA30119.1| unnamed protein product [Escherichia coli] Length = 203 Score = 186 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 98/204 (48%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ LV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVARLVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + A +IR ALRA Sbjct: 181 VSKIAR---PDASSETLIREALRA 201 >gi|260772519|ref|ZP_05881435.1| holliday junction DNA helicase RuvA [Vibrio metschnikovii CIP 69.14] gi|260611658|gb|EEX36861.1| holliday junction DNA helicase RuvA [Vibrio metschnikovii CIP 69.14] Length = 205 Score = 186 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 53/207 (25%), Positives = 103/207 (49%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++I+V GV Y + P+ L I + ++ +R+D L Sbjct: 1 MIGRLRGLLIEKQPPQIVIEVNGVGYEVQMPMSCFYELPNINEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TA++ V + ++ + ++PG+ K Sbjct: 61 YGFNTVSERALFREVIKANGVGPKMGLGILSGMTASQFVACVEREDISTLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSS--VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + S + + + + + + AISAL++LGY QA+ Sbjct: 121 AERLLVEMKDRLKGWGSGDLFTPATDAAPLDHSPVTAEQNAQEEAISALLSLGYKPVQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 V + K Q+IR AL+++ Sbjct: 181 KVVSQMAK---PGMTSEQLIREALKSM 204 >gi|146283144|ref|YP_001173297.1| Holliday junction DNA helicase RuvA [Pseudomonas stutzeri A1501] gi|166230587|sp|A4VNA4|RUVA_PSEU5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|145571349|gb|ABP80455.1| Holliday junction DNA helicase RuvA [Pseudomonas stutzeri A1501] gi|327481497|gb|AEA84807.1| Holliday junction DNA helicase RuvA [Pseudomonas stutzeri DSM 4166] Length = 201 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 114/205 (55%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV G+ Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGTLAEKQPPHMILDVNGIGYEVEVPMTTLYRLPAVGEPVTLHTHLVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ V+ +IPG+ K Sbjct: 61 YGFAEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSVLVRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + S+ ++ + E ++ S +A+SAL++LG+ +A+ A Sbjct: 121 AERLLVELKDRFKAWESMPA--IATLVVEPGSKTAVTSAENDAVSALISLGFKPQEASRA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ ++ ++IR AL+ + Sbjct: 179 VSAIQEEN---LSSEEMIRRALKGM 200 >gi|261252501|ref|ZP_05945074.1| holliday junction DNA helicase RuvA [Vibrio orientalis CIP 102891] gi|260935892|gb|EEX91881.1| holliday junction DNA helicase RuvA [Vibrio orientalis CIP 102891] Length = 205 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 55/207 (26%), Positives = 102/207 (49%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI+V G+ Y + P+ L +G+ ++ +R+D L Sbjct: 1 MIGRLRGILIEKQPPELLIEVNGIGYEVQMPMSCFYELPNLGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TA++ V S+ ++ + ++PG+ K Sbjct: 61 YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVASVEREDISTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP--SFAINAISALVNLGYGQDQAT 178 A R++ E+K + S+ + S A+SAL+ LGY QA+ Sbjct: 121 AERLVVEMKDRLKGWSAGDLFTPFTDAAPADSVPQATQESAEEEAVSALLALGYKPTQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 V V K + Q+IR AL+++ Sbjct: 181 KVVSQVKKAD---MSSEQLIREALKSM 204 >gi|237731899|ref|ZP_04562380.1| holliday junction helicase subunit B [Citrobacter sp. 30_2] gi|226907438|gb|EEH93356.1| holliday junction helicase subunit B [Citrobacter sp. 30_2] Length = 203 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 98/204 (48%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLLETGGVGYEVHMPMTCFYELPEAGQEAIIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREELGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPTTDDTEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + A +IR ALRA Sbjct: 181 VSKIAR---PDASSETLIREALRA 201 >gi|15641848|ref|NP_231480.1| Holliday junction DNA helicase RuvA [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591344|ref|ZP_01678632.1| Holliday junction DNA helicase RuvA [Vibrio cholerae 2740-80] gi|121730273|ref|ZP_01682649.1| Holliday junction DNA helicase RuvA [Vibrio cholerae V52] gi|147675231|ref|YP_001217380.1| Holliday junction DNA helicase RuvA [Vibrio cholerae O395] gi|153824054|ref|ZP_01976721.1| Holliday junction DNA helicase RuvA [Vibrio cholerae B33] gi|227081975|ref|YP_002810526.1| Holliday junction DNA helicase RuvA [Vibrio cholerae M66-2] gi|229508057|ref|ZP_04397562.1| holliday junction DNA helicase RuvA [Vibrio cholerae BX 330286] gi|229511704|ref|ZP_04401183.1| holliday junction DNA helicase RuvA [Vibrio cholerae B33] gi|229518843|ref|ZP_04408286.1| holliday junction DNA helicase RuvA [Vibrio cholerae RC9] gi|229607618|ref|YP_002878266.1| Holliday junction DNA helicase RuvA [Vibrio cholerae MJ-1236] gi|254848932|ref|ZP_05238282.1| holliday junction DNA helicase motor protein [Vibrio cholerae MO10] gi|255745394|ref|ZP_05419343.1| holliday junction DNA helicase RuvA [Vibrio cholera CIRS 101] gi|298498115|ref|ZP_07007922.1| Holliday junction DNA helicase RuvA [Vibrio cholerae MAK 757] gi|20455267|sp|Q9KR01|RUVA_VIBCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|172047659|sp|A5F761|RUVA_VIBC3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254767399|sp|C3LNE9|RUVA_VIBCM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|9656374|gb|AAF94994.1| Holliday junction DNA helicase RuvA [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121546808|gb|EAX56974.1| Holliday junction DNA helicase RuvA [Vibrio cholerae 2740-80] gi|121627975|gb|EAX60536.1| Holliday junction DNA helicase RuvA [Vibrio cholerae V52] gi|126518426|gb|EAZ75649.1| Holliday junction DNA helicase RuvA [Vibrio cholerae B33] gi|146317114|gb|ABQ21653.1| Holliday junction DNA helicase RuvA [Vibrio cholerae O395] gi|227009863|gb|ACP06075.1| Holliday junction DNA helicase RuvA [Vibrio cholerae M66-2] gi|227013744|gb|ACP09954.1| Holliday junction DNA helicase RuvA [Vibrio cholerae O395] gi|229343532|gb|EEO08507.1| holliday junction DNA helicase RuvA [Vibrio cholerae RC9] gi|229351669|gb|EEO16610.1| holliday junction DNA helicase RuvA [Vibrio cholerae B33] gi|229355562|gb|EEO20483.1| holliday junction DNA helicase RuvA [Vibrio cholerae BX 330286] gi|229370273|gb|ACQ60696.1| holliday junction DNA helicase RuvA [Vibrio cholerae MJ-1236] gi|254844637|gb|EET23051.1| holliday junction DNA helicase motor protein [Vibrio cholerae MO10] gi|255737224|gb|EET92620.1| holliday junction DNA helicase RuvA [Vibrio cholera CIRS 101] gi|297542448|gb|EFH78498.1| Holliday junction DNA helicase RuvA [Vibrio cholerae MAK 757] Length = 204 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 52/206 (25%), Positives = 101/206 (49%), Gaps = 4/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI+V G+ Y + P+ + L IG+ ++ +R+D L Sbjct: 1 MIGRLRGTLIEKLPPQILIEVGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ + +LS +TA + V + ++ + ++PG+ K Sbjct: 61 YGFNTVSERALFREVIKANGVGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + + + + + + A+SAL+ LGY QA+ Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPATDAAPVDSTPVIAQNAQEEAMSALLALGYKPPQASK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 AV V K ++IR AL+++ Sbjct: 181 AVSQVAKA---GMSSEELIREALKSM 203 >gi|315180569|gb|ADT87483.1| Holliday junction DNA helicase motor protein [Vibrio furnissii NCTC 11218] Length = 205 Score = 185 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 54/207 (26%), Positives = 99/207 (47%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLI+V G+ Y + P+ L IGD ++ +R+D L Sbjct: 1 MIGRLRGTLIEKQPPQVLIEVGGIGYEVQMPMSCFYELANIGDEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ + +LS +TA++ V + ++ + ++PG+ K Sbjct: 61 YGFNTVNERALFREVIKANGVGPKMGLAILSGMTASQFVACVEREDISTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + + + + A+SAL+ LGY QA+ Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPATDAAPLDAMGASHDQNAEEEAVSALLALGYKPAQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 AV V + Q+IR AL+++ Sbjct: 181 KAVSQVSQ---PDMTSEQLIREALKSM 204 >gi|254482531|ref|ZP_05095770.1| Holliday junction DNA helicase RuvA [marine gamma proteobacterium HTCC2148] gi|214037222|gb|EEB77890.1| Holliday junction DNA helicase RuvA [marine gamma proteobacterium HTCC2148] Length = 204 Score = 185 bits (469), Expect = 4e-45, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 100/205 (48%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+GN+ +L++V GV Y + P+ TL L ++G +L +R+D L Sbjct: 1 MIGRIRGNLVHKQPPVILVEVGGVGYELQVPMTTLFQLPELGAEVSLVTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + DR F L V GVG ++A+ +LS + + + + + +PG+ K Sbjct: 61 YGFAQERDRALFRQLIKVSGVGPKLALTILSGMDSASFARCVQRDDISSLVALPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ K + ++ Q+ +A AL+ LGY +A Sbjct: 121 AERLLVEMRDKLKDWLGQLDGELPSSGPAQSAAPV--DRVADAEGALIALGYKPAEAARM 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +V + +I + +IR AL+++ Sbjct: 179 VAAV--NDDSIENSEDLIRRALKSM 201 >gi|315126271|ref|YP_004068274.1| Holliday junction DNA helicase motor protein [Pseudoalteromonas sp. SM9913] gi|315014785|gb|ADT68123.1| Holliday junction DNA helicase motor protein [Pseudoalteromonas sp. SM9913] Length = 205 Score = 185 bits (469), Expect = 4e-45, Method: Composition-based stats. Identities = 57/207 (27%), Positives = 105/207 (50%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L++V GV Y + P+ L K+GD ++ +R+D L Sbjct: 1 MIGRLNGVLVEKQPPEILLEVSGVGYEVQMPMTCFYDLPKVGDNAIVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L GVG ++ + +LS ++A + V + +++ + ++PG+ K Sbjct: 61 FGFNNKTERALFRELLKANGVGPKLGLAILSGMSAQQFVSCVNNEDATALVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDM--SCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + + + + S V + + + A +A+SALV LGY QA Sbjct: 121 AERLVLEMKDRLKNWGNDLFTPFSDSAVIEPASDATIANNAADDAVSALVALGYKLPQAQ 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 AV SV K +I+ +L+++ Sbjct: 181 KAVKSVSK---PDMSTEVLIKESLKSM 204 >gi|320539865|ref|ZP_08039524.1| component of RuvABC resolvasome, regulatory subunit [Serratia symbiotica str. Tucson] gi|320030051|gb|EFW12071.1| component of RuvABC resolvasome, regulatory subunit [Serratia symbiotica str. Tucson] Length = 204 Score = 185 bits (469), Expect = 4e-45, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 105/205 (51%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++GNI VL++ GV Y +Y P+ L ++G +F +R+D L Sbjct: 1 MIGRLRGNILEKQPPLVLLEANGVGYEVYMPMTCFYQLPELGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V ++ + + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAVEHEEITTLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI-CSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + L+ + + S + + + A+SALV LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFTNSSGSSLPATAVQTADNDTEAEAVSALVALGYKPQEASR 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V + K + AD +IR ALRA Sbjct: 181 MVSKIAK---SGADCETLIRDALRA 202 >gi|283832740|ref|ZP_06352481.1| holliday junction DNA helicase RuvA [Citrobacter youngae ATCC 29220] gi|291072423|gb|EFE10532.1| holliday junction DNA helicase RuvA [Citrobacter youngae ATCC 29220] Length = 203 Score = 185 bits (469), Expect = 4e-45, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 97/204 (47%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLETGGVGYEVHMPMTCFYELPEAGQEAIIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREELGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPVTDDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + A +IR ALRA Sbjct: 181 VSKIAR---PDASSETLIREALRA 201 >gi|330502219|ref|YP_004379088.1| Holliday junction DNA helicase RuvA [Pseudomonas mendocina NK-01] gi|328916505|gb|AEB57336.1| Holliday junction DNA helicase RuvA [Pseudomonas mendocina NK-01] Length = 202 Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 109/204 (53%), Gaps = 5/204 (2%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 IG+++G + ++L+DV GV Y + P+ TL L +G+ TL +R+D L+ Sbjct: 3 IGRLRGTLAEKQPPHLLLDVNGVGYELEVPMTTLYRLPAVGEPVTLHAHLVVREDAHLLY 62 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + ++PG+ K A Sbjct: 63 GFFEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTAALVKVPGVGKKTA 122 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 R++ ELK + + S+ V + A S S +A+SAL++LGY +A+ AV Sbjct: 123 ERLLVELKDRFKAWESIPSIAPLVVEPQLAQAVS--SAENDAVSALISLGYKPQEASRAV 180 Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205 +V + + +IR ALR + Sbjct: 181 AAVKE---DGMSSEDLIRRALRGM 201 >gi|317491787|ref|ZP_07950222.1| Holliday junction DNA helicase RuvA [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920221|gb|EFV41545.1| Holliday junction DNA helicase RuvA [Enterobacteriaceae bacterium 9_2_54FAA] Length = 204 Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L ++G +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPEVLLEANGVGYEVHMPMTCFYELPELGQEVIIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V GVG ++A+ +LS ++A + V +I + + ++PG+ K Sbjct: 61 YGFNNKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAIEREEVSTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA-HICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + L+ + + S + A S A+SAL+ LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLTGDLFNNHSDLPVPAAKKPASEIDAEGEAVSALIALGYKPQEASR 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + + K AD +IR ALRA Sbjct: 181 MISKIAK---PDADSETLIRDALRA 202 >gi|260768875|ref|ZP_05877809.1| holliday junction DNA helicase RuvA [Vibrio furnissii CIP 102972] gi|260616905|gb|EEX42090.1| holliday junction DNA helicase RuvA [Vibrio furnissii CIP 102972] Length = 205 Score = 184 bits (468), Expect = 5e-45, Method: Composition-based stats. Identities = 54/207 (26%), Positives = 99/207 (47%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLI+V G+ Y + P+ L IGD ++ +R+D L Sbjct: 1 MIGRLRGTLIEKQPPQVLIEVGGIGYEVQMPMSCFYELANIGDEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ + +LS +TA++ V + ++ + ++PG+ K Sbjct: 61 YGFNTVNERALFREVIKANGVGPKMGLAILSGMTASQFVACVEREDISTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + + + + A+SAL+ LGY QA+ Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPATDAAPLDAMGAIHDQNAEEEAVSALLALGYKPAQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 AV V + Q+IR AL+++ Sbjct: 181 KAVSQVAQ---PDMTSEQLIREALKSM 204 >gi|332305758|ref|YP_004433609.1| Holliday junction DNA helicase RuvA [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173087|gb|AEE22341.1| Holliday junction DNA helicase RuvA [Glaciecola agarilytica 4H-3-7+YE-5] Length = 207 Score = 184 bits (468), Expect = 5e-45, Method: Composition-based stats. Identities = 59/209 (28%), Positives = 103/209 (49%), Gaps = 7/209 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + VLIDV GV Y I P+ + L ++G+ +++ +R+D L Sbjct: 1 MIGRIRGTLIEKQPPEVLIDVSGVGYEIQIPMTSFYQLPEVGEQASVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L GVG ++A+ +LS ++ ++ + ++ + ++PG+ K Sbjct: 61 FGFADKNERAVFRELIKASGVGPKLALTILSGMSGQNFMQCVAHEDITALVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQ----DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ E++ + LS + N + + A+SAL+ LGY Q Sbjct: 121 AERLVIEMRDRFKKLSLEQSAGDDFTLQGSNGIENTFVTSTDAKEEALSALIALGYKAQQ 180 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ + SV K+ +IR ALRA+ Sbjct: 181 ASKVINSVYVKD---ITSEALIREALRAM 206 >gi|254780553|ref|YP_003064966.1| Holliday junction DNA helicase RuvA [Candidatus Liberibacter asiaticus str. psy62] gi|254040230|gb|ACT57026.1| Holliday junction DNA helicase RuvA [Candidatus Liberibacter asiaticus str. psy62] Length = 207 Score = 184 bits (468), Expect = 5e-45, Method: Composition-based stats. Identities = 207/207 (100%), Positives = 207/207 (100%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL Sbjct: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI Sbjct: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA Sbjct: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 VVSVLKKEKNIADDSQIIRLALRAISC Sbjct: 181 VVSVLKKEKNIADDSQIIRLALRAISC 207 >gi|119472454|ref|ZP_01614553.1| Holliday junction DNA helicase motor protein [Alteromonadales bacterium TW-7] gi|119444891|gb|EAW26190.1| Holliday junction DNA helicase motor protein [Alteromonadales bacterium TW-7] Length = 205 Score = 184 bits (467), Expect = 6e-45, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 104/207 (50%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L++V GV Y + P+ L K+G+ ++ +R+D L Sbjct: 1 MIGRLNGILVEKQPPEILLEVSGVGYEVQMPMTCFYDLPKVGENTIVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L GVG ++ + +LS ++A + V + +++ + ++PG+ K Sbjct: 61 FGFNNKTERALFRELLKANGVGPKLGLAILSGMSAQQFVSCVNNEDATSLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS--MPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + + + S + H + + A +A+SALV LGY QA Sbjct: 121 AERLVLEMKDRLKDWGNDLFTPFSDSAVIEPHSDALVANNAADDAVSALVALGYKLPQAQ 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 AV SV K +I+ +L+++ Sbjct: 181 KAVKSVSK---PDMSTEVLIKESLKSM 204 >gi|254516709|ref|ZP_05128768.1| Holliday junction DNA helicase RuvA [gamma proteobacterium NOR5-3] gi|219675132|gb|EED31499.1| Holliday junction DNA helicase RuvA [gamma proteobacterium NOR5-3] Length = 203 Score = 184 bits (467), Expect = 6e-45, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 101/204 (49%), Gaps = 6/204 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + + +L+DV GV Y I P+ TL L +GD TL +R+D L Sbjct: 1 MIGRISGTLLHKHPPEILVDVAGVGYEIQVPMTTLFQLPALGDAVTLLTHHAVREDAQTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+S+ DR+ F L V GVG ++A+ +LS + + ++ + + +PG+ K Sbjct: 61 YGFVSERDRELFRHLIKVSGVGPKLALTILSGMDSDSFARAVQADDLTALVALPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ + + + A +A ALV+LGY +A Sbjct: 121 AERLLIEMRDRLSGWLDKITDTGGGM----ARPIPASDKLSDAEEALVSLGYKPAEAARL 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V V +I D ++IRLALR+ Sbjct: 177 VARV--DNDDITDSEELIRLALRS 198 >gi|109899252|ref|YP_662507.1| Holliday junction DNA helicase RuvA [Pseudoalteromonas atlantica T6c] gi|109701533|gb|ABG41453.1| Holliday junction DNA helicase subunit RuvA [Pseudoalteromonas atlantica T6c] Length = 209 Score = 184 bits (467), Expect = 6e-45, Method: Composition-based stats. Identities = 59/209 (28%), Positives = 103/209 (49%), Gaps = 7/209 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + VLIDV GV Y I P+ + L ++G +++ +R+D L Sbjct: 3 MIGRIRGTVVEKQPPEVLIDVAGVGYEIQIPMTSFYQLPEVGAEASVYTHFVVREDAQLL 62 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L GVG ++A+ +LS ++ ++ + ++ + ++PG+ K Sbjct: 63 FGFADKNERAVFRELIKASGVGPKLALTILSGMSGQHFMQCVAHEDITALVKLPGVGKKT 122 Query: 121 ASRIMTELKGKAISLSSVVQQD----MSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ E++ + LS + N + + A+SAL+ LGY Q Sbjct: 123 AERLVIEMRDRFKKLSLEQSASDDFALQGNNSIENTFVTSSDAKEEALSALIALGYKAPQ 182 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ + SV K+ ++IR ALRA+ Sbjct: 183 ASKVINSVYVKD---ITSEELIREALRAM 208 >gi|254506186|ref|ZP_05118330.1| Holliday junction DNA helicase RuvA [Vibrio parahaemolyticus 16] gi|219551004|gb|EED27985.1| Holliday junction DNA helicase RuvA [Vibrio parahaemolyticus 16] Length = 223 Score = 184 bits (466), Expect = 7e-45, Method: Composition-based stats. Identities = 51/205 (24%), Positives = 103/205 (50%), Gaps = 4/205 (1%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 IG+++G + +LI+V G+ Y + P+ L +G+ ++ +R+D L+ Sbjct: 21 IGRLRGILIEKQPPELLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLLY 80 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF + +R F + GVG ++ +G+LS +TA++ V S+ ++ + ++PG+ K A Sbjct: 81 GFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVASVEREDISTLVKLPGVGKKTA 140 Query: 122 SRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 R++ E+K + + + + + + S A+SAL+ LGY QA+ Sbjct: 141 ERLVVEMKDRLKGWSAGDLFTPFTDAAPVDSTPTATNSAEEEAVSALLALGYKPTQASKV 200 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++K ++IR AL+++ Sbjct: 201 VAQIIK---PGMSSEELIRDALKSM 222 >gi|227111608|ref|ZP_03825264.1| Holliday junction DNA helicase RuvA [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 205 Score = 184 bits (466), Expect = 7e-45, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+ GV Y ++ P+ L ++ +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPQVLIEANGVGYEVHMPMTCFYELPELNQEAIIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L V GVG ++A+ +LS ++AT+ V ++ + + ++PG+ K Sbjct: 61 FGFNDKQERALFRELIKVNGVGPKLALAILSGMSATQFVSAVEREEIGALIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMS--CVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + LS + +S + A + A +ALV LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLSGDLFNPVSDIPLASPAAADSRVSDPETEAAAALVALGYKPQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 + + + AD +IR ALRA Sbjct: 181 RMISKIAR---PDADCETLIRDALRA 203 >gi|77360814|ref|YP_340389.1| Holliday junction DNA helicase motor protein [Pseudoalteromonas haloplanktis TAC125] gi|90135604|sp|Q3IIJ1|RUVA_PSEHT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|76875725|emb|CAI86946.1| Holliday junction helicase, subunit A [Pseudoalteromonas haloplanktis TAC125] Length = 205 Score = 184 bits (466), Expect = 8e-45, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 106/207 (51%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L++V GV Y + P+ L K+G+ ++ +R+D L Sbjct: 1 MIGRLNGILVEKQPPEILLEVSGVGYEVQMPMTCFYDLPKVGESAIVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++R F L GVG ++ + +LS ++A + V + ++S + ++PG+ K Sbjct: 61 FGFNNKVERALFRELLKANGVGPKLGLAILSGMSAQQFVSCVNNEDSTSLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQ--AHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + + + + S + + + A +A+SALV+LGY QA Sbjct: 121 AERLVLEMKDRLKNWGNDLFTPFSDSAVIEPFSDATIANNAADDAVSALVSLGYKLPQAQ 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 AV SV K +I+ +L+++ Sbjct: 181 KAVKSVSK---PDMSTEVLIKESLKSM 204 >gi|262171190|ref|ZP_06038868.1| holliday junction DNA helicase RuvA [Vibrio mimicus MB-451] gi|261892266|gb|EEY38252.1| holliday junction DNA helicase RuvA [Vibrio mimicus MB-451] Length = 204 Score = 184 bits (466), Expect = 8e-45, Method: Composition-based stats. Identities = 52/206 (25%), Positives = 101/206 (49%), Gaps = 4/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI++ G+ Y + P+ + L IG+ ++ +R+D L Sbjct: 1 MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ + +LS +TA + V + ++ + ++PG+ K Sbjct: 61 YGFNTVSERALFREVIKANGVGPKMGLAILSGMTANQFVFCVEKEDISTLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + + + + + + AISAL+ LGY QA+ Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPATDAAPIDSAPAIAQNAQEEAISALLALGYKPPQASK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 AV V K ++IR AL+++ Sbjct: 181 AVSQVAKA---GMSSEELIREALKSM 203 >gi|261211909|ref|ZP_05926196.1| holliday junction DNA helicase RuvA [Vibrio sp. RC341] gi|260839259|gb|EEX65891.1| holliday junction DNA helicase RuvA [Vibrio sp. RC341] Length = 204 Score = 184 bits (466), Expect = 8e-45, Method: Composition-based stats. Identities = 51/206 (24%), Positives = 100/206 (48%), Gaps = 4/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI+V G+ Y + P+ + L IG+ ++ +R+D L Sbjct: 1 MIGRLRGTLIEKLPPQILIEVGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ + +LS +TA + V + ++ + ++PG+ K Sbjct: 61 YGFNTVSERALFREVIKANGVGPKMGLAILSGMTANQFVSCVEKEDISTLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + + + + + + A+SAL+ LGY QA+ Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPATDAAPIDSVPMMAQNAQEEAVSALLALGYKPPQASK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 V V K ++IR AL+++ Sbjct: 181 VVSQVAKA---GMSCEELIREALKSM 203 >gi|295095544|emb|CBK84634.1| Holliday junction DNA helicase subunit RuvA [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 231 Score = 183 bits (465), Expect = 9e-45, Method: Composition-based stats. Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 4/204 (1%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 IG+++G I VL++V GV Y ++ P+ L + G +F + +R+D L+ Sbjct: 29 IGRLRGIIIEKQPPLVLLEVGGVGYEVHMPMTCFYELPEAGKEAVVFTQFVVREDAQLLY 88 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF + +R F L GVG ++A+ +LS ++A + V ++ ++ + ++PGI K A Sbjct: 89 GFNNKQERTLFRELIKTNGVGPKLALAILSGMSAPQFVNAVEREDPAALIKLPGIGKKTA 148 Query: 122 SRIMTELKGKAISLSSVVQQDMSC-VNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 R++ E+K + L + + V S A++ALV LGY +A+ Sbjct: 149 ERLIVEMKDRFKGLHGDLFTPAADLVLTSPGAPASDDDAEQEAVAALVALGYKPQEASRM 208 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + K A +IR ALRA Sbjct: 209 VSKIAK---PDASSETLIREALRA 229 >gi|117618993|ref|YP_858104.1| Holliday junction DNA helicase RuvA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|166229627|sp|A0KPA3|RUVA_AERHH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|117560400|gb|ABK37348.1| Holliday junction DNA helicase RuvA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 204 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 98/206 (47%), Gaps = 4/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VL++V GV Y + P+ L +IG T+ +R+D L Sbjct: 1 MIGRLRGVVIEKQPPEVLLEVGGVGYEVQMPMSCFYDLPEIGKEATIHTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L GVG ++A+ +LS +TAT+ V S+ + + ++PG+ K Sbjct: 61 YGFNHKQERALFRELIKTNGVGPKLALAILSGMTATQFVLSVEREEISSLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + S + + P + A SALV LGY QA+ Sbjct: 121 AERLVVEMKDRLKGWVSHDLFSPAEITLPARESALRAPDSSEEAASALVALGYKPQQASQ 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 V V + IIR ALR++ Sbjct: 181 IVSKVAA---DGMSVEDIIREALRSL 203 >gi|161502989|ref|YP_001570101.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864336|gb|ABX20959.1| hypothetical protein SARI_01051 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 228 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 55/203 (27%), Positives = 97/203 (47%), Gaps = 3/203 (1%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 IG+++G I VL++ GV Y ++ P+ L + G +F +R+D L+ Sbjct: 27 IGRLRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPESGKEAIIFTHFVVREDAQLLY 86 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF + +R F L GVG ++A+ +LS ++A + V ++ ++ + ++PGI K A Sbjct: 87 GFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREDPAALVKLPGIGKKTA 146 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 R++ E+K + L + + + A++ALV LGY +A+ V Sbjct: 147 ERLIVEMKDRFKGLHGDLFTPAVDLVLMSPASPTSEDAEQEAVAALVALGYKPQEASRMV 206 Query: 182 VSVLKKEKNIADDSQIIRLALRA 204 V + A +IR ALRA Sbjct: 207 SKVAHSD---ASSETLIRDALRA 226 >gi|229515226|ref|ZP_04404686.1| holliday junction DNA helicase RuvA [Vibrio cholerae TMA 21] gi|229347931|gb|EEO12890.1| holliday junction DNA helicase RuvA [Vibrio cholerae TMA 21] Length = 204 Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 51/206 (24%), Positives = 101/206 (49%), Gaps = 4/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI++ G+ Y + P+ + L IG+ ++ +R+D L Sbjct: 1 MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ + +LS +TA + V + ++ + ++PG+ K Sbjct: 61 YGFNTVNERALFREVIKANGVGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + + + + + + A+SAL+ LGY QA+ Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPTTDAAPVDSTPVIAQNAQEEAMSALLALGYKPPQASK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 AV V K ++IR AL+++ Sbjct: 181 AVSQVAKA---GMSSEELIREALKSM 203 >gi|297579365|ref|ZP_06941293.1| Holliday junction DNA helicase RuvA [Vibrio cholerae RC385] gi|297536959|gb|EFH75792.1| Holliday junction DNA helicase RuvA [Vibrio cholerae RC385] Length = 204 Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 51/206 (24%), Positives = 100/206 (48%), Gaps = 4/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI++ G+ Y + P+ + L IG+ ++ +R+D L Sbjct: 1 MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ + +LS +TA + V + ++ + ++PG+ K Sbjct: 61 YGFNTVNERALFREVIKANGVGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + + + + + A+SAL+ LGY QA+ Sbjct: 121 AERLVVEMKDRLKGWGVGDLFTPATDAAPVDSTPVIAQNAQEEAMSALLALGYKPPQASK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 AV V K ++IR AL+++ Sbjct: 181 AVSQVAKA---GMSSEELIREALKSM 203 >gi|328473203|gb|EGF44051.1| Holliday junction DNA helicase RuvA [Vibrio parahaemolyticus 10329] Length = 204 Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 102/206 (49%), Gaps = 4/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLI+V G+ Y + P+ L IG+ ++ +R+D L Sbjct: 1 MIGRLRGILLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TA++ V + ++ + ++PG+ K Sbjct: 61 YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDVSTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + + + + + S S A+SAL+ LGY QA+ Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPFTDAAPTDSASASSNSAEEEAVSALLALGYKPTQASK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 V + K Q+IR AL+++ Sbjct: 181 VVSQIAK---PDMSSEQLIREALKSM 203 >gi|28897825|ref|NP_797430.1| Holliday junction DNA helicase RuvA [Vibrio parahaemolyticus RIMD 2210633] gi|260876984|ref|ZP_05889339.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus AN-5034] gi|260901352|ref|ZP_05909747.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus AQ4037] gi|31076902|sp|Q87QU8|RUVA_VIBPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|28806038|dbj|BAC59314.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus RIMD 2210633] gi|308093747|gb|EFO43442.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus AN-5034] gi|308109588|gb|EFO47128.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus AQ4037] Length = 204 Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 102/206 (49%), Gaps = 4/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLI+V G+ Y + P+ L IG+ ++ +R+D L Sbjct: 1 MIGRLRGILLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TA++ V + ++ + ++PG+ K Sbjct: 61 YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDVSTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + + + + + S S A+SAL+ LGY QA+ Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPFTDAAPTDSAAASSNSAEEEAVSALLALGYKPTQASK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 V + K Q+IR AL+++ Sbjct: 181 VVSQIAK---PDMSSEQLIREALKSM 203 >gi|153217384|ref|ZP_01951135.1| Holliday junction DNA helicase RuvA [Vibrio cholerae 1587] gi|153830574|ref|ZP_01983241.1| Holliday junction DNA helicase RuvA [Vibrio cholerae 623-39] gi|229520306|ref|ZP_04409732.1| holliday junction DNA helicase RuvA [Vibrio cholerae TM 11079-80] gi|229523864|ref|ZP_04413269.1| holliday junction DNA helicase RuvA [Vibrio cholerae bv. albensis VL426] gi|229529131|ref|ZP_04418521.1| holliday junction DNA helicase RuvA [Vibrio cholerae 12129(1)] gi|124113602|gb|EAY32422.1| Holliday junction DNA helicase RuvA [Vibrio cholerae 1587] gi|148873936|gb|EDL72071.1| Holliday junction DNA helicase RuvA [Vibrio cholerae 623-39] gi|229332905|gb|EEN98391.1| holliday junction DNA helicase RuvA [Vibrio cholerae 12129(1)] gi|229337445|gb|EEO02462.1| holliday junction DNA helicase RuvA [Vibrio cholerae bv. albensis VL426] gi|229342672|gb|EEO07664.1| holliday junction DNA helicase RuvA [Vibrio cholerae TM 11079-80] gi|327484398|gb|AEA78805.1| Holliday junction DNA helicase RuvA [Vibrio cholerae LMA3894-4] Length = 204 Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 51/206 (24%), Positives = 101/206 (49%), Gaps = 4/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI++ G+ Y + P+ + L IG+ ++ +R+D L Sbjct: 1 MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ + +LS +TA + V + ++ + ++PG+ K Sbjct: 61 YGFNTVNERALFREVIKANGVGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + + + + + + A+SAL+ LGY QA+ Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPATDAAPVDSTPVIAQNAQEEAMSALLALGYKPPQASK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 AV V K ++IR AL+++ Sbjct: 181 AVSQVAKA---GMSSEELIREALKSM 203 >gi|258621408|ref|ZP_05716442.1| Holliday junction DNA helicase motor protein [Vibrio mimicus VM573] gi|258626836|ref|ZP_05721643.1| Holliday junction DNA helicase motor protein [Vibrio mimicus VM603] gi|262165955|ref|ZP_06033692.1| holliday junction DNA helicase RuvA [Vibrio mimicus VM223] gi|258580883|gb|EEW05825.1| Holliday junction DNA helicase motor protein [Vibrio mimicus VM603] gi|258586796|gb|EEW11511.1| Holliday junction DNA helicase motor protein [Vibrio mimicus VM573] gi|262025671|gb|EEY44339.1| holliday junction DNA helicase RuvA [Vibrio mimicus VM223] Length = 204 Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 52/206 (25%), Positives = 101/206 (49%), Gaps = 4/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI++ G+ Y + P+ + L IG+ ++ +R+D L Sbjct: 1 MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ + +LS +TA + V + ++ + ++PG+ K Sbjct: 61 YGFNTVSERALFREVIKANGVGPKMGLAILSGMTANQFVSCVEKEDISTLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + + + + + + AISAL+ LGY QA+ Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPATDAAPIDSAPAIAQNAQEEAISALLALGYKPPQASK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 AV V K ++IR AL+++ Sbjct: 181 AVSQVAKA---GMSSEELIREALKSM 203 >gi|110833613|ref|YP_692472.1| Holliday junction DNA helicase RuvA [Alcanivorax borkumensis SK2] gi|110646724|emb|CAL16200.1| Holliday junction DNA helicase RuvA [Alcanivorax borkumensis SK2] Length = 201 Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 99/206 (48%), Gaps = 7/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L+DV GV Y + P+ L + G TL +R+D L Sbjct: 2 MIGQLRGTLLEKRPPVLLLDVNGVGYEVEAPMTVFYDLPEAGAELTLHTHFVVREDAQLL 61 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L V GVG ++A+ +LS I A L I Q++ + ++PGI K Sbjct: 62 YGFADRYERELFRALIKVNGVGPKMALAILSGIEADRLARCIQDQDTTSLVKVPGIGKKT 121 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ + + V+ +Q +AI+AL LGY A A Sbjct: 122 AERLVIEMRDRLDKIDGGPVSVPGRVDTDQPD-----DARSDAIAALEALGYRNKDAAVA 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V ++ Q+IR AL++++ Sbjct: 177 VGKAA--DQEGMSSEQLIRKALKSLA 200 >gi|290475277|ref|YP_003468165.1| Holliday junction helicase subunit A [Xenorhabdus bovienii SS-2004] gi|289174598|emb|CBJ81392.1| Holliday junction helicase, subunit A [Xenorhabdus bovienii SS-2004] Length = 205 Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 104/206 (50%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VL++ GV Y ++ P+ L +IG TLF + +R+D L Sbjct: 1 MIGRLRGTVLEKQPPLVLLETNGVGYEVHMPMTCFYELPEIGQEATLFTQFIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V +I + + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAIEQEAITSLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN--KEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + L+ + + +N S A SALV+LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNQSNDINLPAVAKQANSNTDIEAEAASALVSLGYKLQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 V V K AD +IR ALRA Sbjct: 181 RMVSKVAK---PGADCETLIREALRA 203 >gi|146306303|ref|YP_001186768.1| Holliday junction DNA helicase motor protein [Pseudomonas mendocina ymp] gi|145574504|gb|ABP84036.1| Holliday junction DNA helicase subunit RuvA [Pseudomonas mendocina ymp] Length = 202 Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 108/205 (52%), Gaps = 5/205 (2%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 IG+++G + ++L+DV GV Y + P+ TL L +G+ TL +R+D L+ Sbjct: 3 IGRLRGTLAEKQPPHLLLDVNGVGYELEVPMTTLYRLPAVGETLTLHTHQVVREDAHLLY 62 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + ++PG+ K A Sbjct: 63 GFFEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTAALTKVPGVGKKTA 122 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 R++ ELK + + ++ V S S +A+SAL++LGY +A+ AV Sbjct: 123 ERLLVELKDRFKAWETMPAIATLVVEPRLGATVS--SAENDAVSALISLGYKPQEASRAV 180 Query: 182 VSVLKKEKNIADDSQIIRLALRAIS 206 +V + + +IR ALR ++ Sbjct: 181 AAVKE---DGLSSEDLIRRALRGMA 202 >gi|330721244|gb|EGG99343.1| Holliday junction DNA helicase RuvA [gamma proteobacterium IMCC2047] Length = 197 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 9/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+IKG + + +DVQGV Y + P+ T L + +L+ +R+D L Sbjct: 1 MIGRIKGVLIEKSPPDICVDVQGVGYELQVPMNTFYRLPDVDHPVSLYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F + + GVG ++ + +LS I A++ V + + + ++PGI K Sbjct: 61 YGFYEARERELFRAVIKINGVGPKLGLAILSGIEASDFVRVVHNNDVAALTKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ K + +N A A+SAL+ LGY A A Sbjct: 121 AERLVIEMRDKLKDWPEAPGDLQASLNSAAADGT------DEAVSALLALGYKPKDAEKA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + S+ ++IR AL++++ Sbjct: 175 IKSIA---VEGMSSQELIRQALKSMA 197 >gi|37199217|dbj|BAC95049.1| holliday junction resolvasome, DNA-binding subunit [Vibrio vulnificus YJ016] Length = 206 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 101/205 (49%), Gaps = 4/205 (1%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 IG+++G + +LI+V G+ Y + P+ L IG+ ++ +R+D L+ Sbjct: 4 IGRLRGILLEKQPPELLIEVNGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLLY 63 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF + +R F + GVG ++ + +LS +TA++ V S+ ++ + ++PG+ K A Sbjct: 64 GFNTVKERALFREVIKANGVGPKLGLAILSGMTASQFVASVEREDISTLVKLPGVGKKTA 123 Query: 122 SRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 R++ E+K + + + + + S S A+SAL+ LGY QA+ Sbjct: 124 ERLVVEMKDRLKGWSAGDLFTPFTDAAPVDSGSTSSNSAEEEAVSALLALGYKPVQASKV 183 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + K Q+IR AL+++ Sbjct: 184 VSQIAK---PDMTSEQLIREALKSM 205 >gi|152970923|ref|YP_001336032.1| Holliday junction DNA helicase RuvA [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206580323|ref|YP_002237747.1| Holliday junction DNA helicase RuvA [Klebsiella pneumoniae 342] gi|238895438|ref|YP_002920173.1| Holliday junction DNA helicase RuvA [Klebsiella pneumoniae NTUH-K2044] gi|262041978|ref|ZP_06015160.1| Holliday junction DNA helicase RuvA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288934605|ref|YP_003438664.1| Holliday junction DNA helicase RuvA [Klebsiella variicola At-22] gi|290508806|ref|ZP_06548177.1| Holliday junction DNA helicase RuvA [Klebsiella sp. 1_1_55] gi|330001163|ref|ZP_08303909.1| Holliday junction DNA helicase RuvA [Klebsiella sp. MS 92-3] gi|166230560|sp|A6TB31|RUVA_KLEP7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226698734|sp|B5XQ04|RUVA_KLEP3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|150955772|gb|ABR77802.1| Holliday junction DNA helicase motor protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206569381|gb|ACI11157.1| Holliday junction DNA helicase RuvA [Klebsiella pneumoniae 342] gi|238547755|dbj|BAH64106.1| Holliday junction DNA helicase motor protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259040676|gb|EEW41765.1| Holliday junction DNA helicase RuvA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288889314|gb|ADC57632.1| Holliday junction DNA helicase RuvA [Klebsiella variicola At-22] gi|289778200|gb|EFD86197.1| Holliday junction DNA helicase RuvA [Klebsiella sp. 1_1_55] gi|328537774|gb|EGF63974.1| Holliday junction DNA helicase RuvA [Klebsiella sp. MS 92-3] Length = 203 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 99/204 (48%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLETAGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVASLVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAADLVLTSPAGPTADDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + A+ +IR ALRA Sbjct: 181 VSKIAR---PDANSETLIREALRA 201 >gi|262404190|ref|ZP_06080745.1| holliday junction DNA helicase RuvA [Vibrio sp. RC586] gi|262349222|gb|EEY98360.1| holliday junction DNA helicase RuvA [Vibrio sp. RC586] Length = 204 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 51/206 (24%), Positives = 101/206 (49%), Gaps = 4/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI++ G+ Y + P+ + L IG+ ++ +R+D L Sbjct: 1 MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ + +LS +TA + V + ++ + ++PG+ K Sbjct: 61 YGFNTVSERALFREVIKANGVGPKMGLAILSGMTANQFVSCVEKEDISTLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + + + + + + AISAL+ LGY QA+ Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPATDAAPIDSVPALAQNAQDEAISALLALGYKPPQASK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 AV + K ++IR AL+++ Sbjct: 181 AVSQIAKA---GMSCEELIREALKSM 203 >gi|332993889|gb|AEF03944.1| Holliday junction DNA helicase motor protein [Alteromonas sp. SN2] Length = 206 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 99/207 (47%), Gaps = 6/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + +L+D GV Y I+ P+ + L +G+ ++ +R+D L Sbjct: 1 MIGRIRGTLAEKQPPEILVDANGVGYEIHMPMTSFYQLPAVGEEVVVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++R F L GVG ++ + +LS ++A + + ++ + + +PGI K Sbjct: 61 FGFADKMERGLFRELIKANGVGPKLGLTILSGMSAGQFLSAVQNADVSALVSLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLS---SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ ELK + S+ S + + +A SALV LGY QA Sbjct: 121 AERLVVELKDRLAKFGKVQSIAIPPPSGDLLNTNTLVEVNDTREDAQSALVALGYKPAQA 180 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRA 204 + + SV K+ +IR AL+A Sbjct: 181 SKLIDSVYKEGMES---ESLIREALKA 204 >gi|88861319|ref|ZP_01135950.1| Holliday junction DNA helicase motor protein [Pseudoalteromonas tunicata D2] gi|88816698|gb|EAR26522.1| Holliday junction DNA helicase motor protein [Pseudoalteromonas tunicata D2] Length = 205 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 102/207 (49%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L+DV GV Y ++ P+ L K G+ TL+ +R+D L Sbjct: 1 MIGRLSGILIEKQPPQILLDVAGVGYEVHLPMTCFYHLPKEGEKTTLYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L GVG ++ + +LS ++A + V+ + +++ + ++PG+ K Sbjct: 61 FGFNHKAERALFRELLKANGVGPKLGLAILSGMSADQFVQCVQHEDATSLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSC--VNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + + S V + Q S +AI+ALV LGY Q QA Sbjct: 121 AERLVLEMKDRLKDWGRDLFNPSSNELVLEMQNGPNVHDSAEDDAIAALVALGYKQAQAE 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 V S+ +IR AL+++ Sbjct: 181 KTVKSLRA---PGKTSEVLIREALKSM 204 >gi|149366014|ref|ZP_01888049.1| Holliday junction DNA helicase [Yersinia pestis CA88-4125] gi|153949523|ref|YP_001401004.1| Holliday junction DNA helicase RuvA [Yersinia pseudotuberculosis IP 31758] gi|161484795|ref|NP_669562.2| Holliday junction DNA helicase RuvA [Yersinia pestis KIM 10] gi|161511391|ref|NP_993241.2| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Microtus str. 91001] gi|161760577|ref|YP_070557.2| Holliday junction DNA helicase RuvA [Yersinia pseudotuberculosis IP 32953] gi|162420589|ref|YP_001606843.1| Holliday junction DNA helicase RuvA [Yersinia pestis Angola] gi|165928362|ref|ZP_02224194.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Orientalis str. F1991016] gi|165938889|ref|ZP_02227443.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Orientalis str. IP275] gi|166009183|ref|ZP_02230081.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Antiqua str. E1979001] gi|166210491|ref|ZP_02236526.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Antiqua str. B42003004] gi|167401440|ref|ZP_02306937.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420007|ref|ZP_02311760.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424505|ref|ZP_02316258.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470862|ref|ZP_02335566.1| Holliday junction DNA helicase motor protein [Yersinia pestis FV-1] gi|170024378|ref|YP_001720883.1| Holliday junction DNA helicase RuvA [Yersinia pseudotuberculosis YPIII] gi|186895407|ref|YP_001872519.1| Holliday junction DNA helicase RuvA [Yersinia pseudotuberculosis PB1/+] gi|218929164|ref|YP_002347039.1| Holliday junction DNA helicase RuvA [Yersinia pestis CO92] gi|229894771|ref|ZP_04509951.1| component of RuvABC resolvasome, regulatory subunit [Yersinia pestis Pestoides A] gi|229897474|ref|ZP_04512630.1| component of RuvABC resolvasome, regulatory subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229898120|ref|ZP_04513269.1| component of RuvABC resolvasome, regulatory subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229901979|ref|ZP_04517100.1| component of RuvABC resolvasome, regulatory subunit [Yersinia pestis Nepal516] gi|270490837|ref|ZP_06207911.1| Holliday junction DNA helicase RuvA [Yersinia pestis KIM D27] gi|294503877|ref|YP_003567939.1| Holliday junction DNA helicase motor protein [Yersinia pestis Z176003] gi|20455249|sp|Q8ZEU6|RUVA_YERPE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|90146256|sp|Q66AU0|RUVA_YERPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|167012664|sp|A7FIC6|RUVA_YERP3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560143|sp|B2K323|RUVA_YERPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560144|sp|A9QYX3|RUVA_YERPG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560145|sp|B1JLL1|RUVA_YERPY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|115347775|emb|CAL20692.1| Holliday junction DNA helicase [Yersinia pestis CO92] gi|149292427|gb|EDM42501.1| Holliday junction DNA helicase [Yersinia pestis CA88-4125] gi|152961018|gb|ABS48479.1| Holliday junction DNA helicase RuvA [Yersinia pseudotuberculosis IP 31758] gi|162353404|gb|ABX87352.1| Holliday junction DNA helicase RuvA [Yersinia pestis Angola] gi|165913252|gb|EDR31875.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Orientalis str. IP275] gi|165919645|gb|EDR36978.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Orientalis str. F1991016] gi|165991738|gb|EDR44039.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Antiqua str. E1979001] gi|166207671|gb|EDR52151.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Antiqua str. B42003004] gi|166961702|gb|EDR57723.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049136|gb|EDR60544.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056387|gb|EDR66156.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169750912|gb|ACA68430.1| Holliday junction DNA helicase RuvA [Yersinia pseudotuberculosis YPIII] gi|186698433|gb|ACC89062.1| Holliday junction DNA helicase RuvA [Yersinia pseudotuberculosis PB1/+] gi|229680875|gb|EEO76970.1| component of RuvABC resolvasome, regulatory subunit [Yersinia pestis Nepal516] gi|229688836|gb|EEO80903.1| component of RuvABC resolvasome, regulatory subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229693811|gb|EEO83860.1| component of RuvABC resolvasome, regulatory subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229702244|gb|EEO90263.1| component of RuvABC resolvasome, regulatory subunit [Yersinia pestis Pestoides A] gi|262362004|gb|ACY58725.1| Holliday junction DNA helicase motor protein [Yersinia pestis D106004] gi|262365859|gb|ACY62416.1| Holliday junction DNA helicase motor protein [Yersinia pestis D182038] gi|270339341|gb|EFA50118.1| Holliday junction DNA helicase RuvA [Yersinia pestis KIM D27] gi|294354336|gb|ADE64677.1| Holliday junction DNA helicase motor protein [Yersinia pestis Z176003] gi|320015265|gb|ADV98836.1| component of RuvABC resolvasome, regulatory subunit [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 204 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y + P+ L ++G +F + +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLETNGVGYEVQLPMTCFYELPELGQEAIIFTQFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V GVG ++A+ +LS ++A + V ++ ++ + ++PG+ K Sbjct: 61 YGFNNKQERALFRELIKVNGVGPKLALAILSGMSAQQFVGAVEREDITTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN-KEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + L+ + + ++ + S A SALV LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNTGDISLPTASPQTSDADIEAEAASALVALGYKPQEASR 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V + K AD +IR ALRA Sbjct: 181 LVSKIAK---PGADCETLIRDALRA 202 >gi|332534227|ref|ZP_08410072.1| holliday junction DNA helicase RuvA [Pseudoalteromonas haloplanktis ANT/505] gi|332036307|gb|EGI72778.1| holliday junction DNA helicase RuvA [Pseudoalteromonas haloplanktis ANT/505] Length = 205 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 57/207 (27%), Positives = 105/207 (50%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L++V GV Y + P+ L KIG+ ++ +R+D L Sbjct: 1 MIGRLNGILVEKQPPEILLEVSGVGYEVQMPMTCFYDLPKIGENAIVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++R F L GVG ++ + +LS ++A + V + ++S + ++PG+ K Sbjct: 61 FGFNNKVERALFRELLKANGVGPKLGLAILSGMSAKQFVSCVNNEDSTSLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDM--SCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + + + S V + + + A +A+SAL+ LGY QA Sbjct: 121 AERLVLEMKDRLKDWGNDLFTPFSDSAVIEPMSDATIANNAADDAVSALLALGYKLPQAQ 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 AV S+ K +IR +L+++ Sbjct: 181 KAVKSISK---PDMSTEVLIRESLKSM 204 >gi|62180473|ref|YP_216890.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161613551|ref|YP_001587516.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|224583600|ref|YP_002637398.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|75482773|sp|Q57NA2|RUVA_SALCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189045767|sp|A9MUX3|RUVA_SALPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254767385|sp|C0Q2F4|RUVA_SALPC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|62128106|gb|AAX65809.1| Holliday junction helicase subunit A [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161362915|gb|ABX66683.1| hypothetical protein SPAB_01271 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|224468127|gb|ACN45957.1| Holliday junction DNA helicase motor protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322714948|gb|EFZ06519.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 203 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 97/204 (47%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREELGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAVDLVLTSPASPTSEDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + A +IR ALRA Sbjct: 181 VNKIAR---PDASSETLIRDALRA 201 >gi|300717084|ref|YP_003741887.1| Holliday junction ATP-dependent DNA helicase [Erwinia billingiae Eb661] gi|299062920|emb|CAX60040.1| Holliday junction ATP-dependent DNA helicase [Erwinia billingiae Eb661] Length = 205 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 100/206 (48%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L ++ LF +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLEANGVGYEVHMPMTCFYELPELNQEAILFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L V GVG ++A+ +LS ++A + V ++ + + ++PG+ K Sbjct: 61 FGFNSKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVEREEIAALVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSV--VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + + + E + A++ALV+LGY +A+ Sbjct: 121 AERLVVEMKDRFKGMHGDLFAADAPFALTSEVQPADAANDAEGEAVAALVSLGYKPQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 + + + AD +IR ALRA Sbjct: 181 RMISKLGR---PDADCETLIREALRA 203 >gi|269138790|ref|YP_003295491.1| holliday junction resolvasome, DNA-binding subunit [Edwardsiella tarda EIB202] gi|267984451|gb|ACY84280.1| holliday junction resolvasome, DNA-binding subunit [Edwardsiella tarda EIB202] gi|304558782|gb|ADM41446.1| Holliday junction DNA helicase RuvA [Edwardsiella tarda FL6-60] Length = 202 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 4/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I V+++ GV Y + P+ L ++G +F +R+D L Sbjct: 1 MIGRLRGTILEKQPPQVVLETHGVGYEVQMPMTCFYELPQVGSEAVIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V GVG ++A+ +LS ++A + V ++ + + ++PG+ K Sbjct: 61 YGFNNKQERALFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREEVAALVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + LS + + + A++AL+ LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLSGDLFTPTDDL-PPSTQPQAQADAEGEAVAALIALGYKPQEASRL 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V V AD +IR ALRA Sbjct: 180 VNRVTVA---GADSETLIRDALRA 200 >gi|120554625|ref|YP_958976.1| Holliday junction DNA helicase RuvA [Marinobacter aquaeolei VT8] gi|166230564|sp|A1U1C0|RUVA_MARAV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|120324474|gb|ABM18789.1| Holliday junction DNA helicase subunit RuvA [Marinobacter aquaeolei VT8] Length = 209 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 60/208 (28%), Positives = 99/208 (47%), Gaps = 6/208 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + L++ G+ Y I P T L + G TL +R+D L Sbjct: 1 MIGRIRGMLIEKSPGQALVECSGLGYEIDIPYTTFFHLPETGQEVTLHTHFAVREDAQSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S LDR F LL V GVG ++A+G+LS + A + + + +++ + ++PG+ K Sbjct: 61 YGFASRLDRNLFRLLIKVNGVGPKLAVGILSGLDAQQFIRCVEARDANSLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSS---VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ E+ + L Q D+ + P A +AL+ LGY +A Sbjct: 121 AERLLIEMADRIGQLEGQFVPSQPDVPTGAGAATASQAGPDPREEAEAALIALGYKPQEA 180 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ V + +IRLAL+ + Sbjct: 181 AKAISKVA---GPDMNSETLIRLALKNM 205 >gi|16760845|ref|NP_456462.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16765237|ref|NP_460852.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29141463|ref|NP_804805.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56413186|ref|YP_150261.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|167994196|ref|ZP_02575288.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168234044|ref|ZP_02659102.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168241523|ref|ZP_02666455.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168259832|ref|ZP_02681805.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168462574|ref|ZP_02696505.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168820718|ref|ZP_02832718.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194446097|ref|YP_002041160.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451798|ref|YP_002045948.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194471309|ref|ZP_03077293.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197247981|ref|YP_002146128.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197263523|ref|ZP_03163597.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197362112|ref|YP_002141749.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198242475|ref|YP_002215191.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200389612|ref|ZP_03216223.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205352399|ref|YP_002226200.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856584|ref|YP_002243235.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213426405|ref|ZP_03359155.1| Holliday junction DNA helicase motor protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580455|ref|ZP_03362281.1| Holliday junction DNA helicase motor protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213609154|ref|ZP_03368980.1| Holliday junction DNA helicase motor protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213859991|ref|ZP_03385695.1| Holliday junction DNA helicase motor protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|238912045|ref|ZP_04655882.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289824023|ref|ZP_06543621.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|54039573|sp|P66747|RUVA_SALTI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|54042202|sp|P66746|RUVA_SALTY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|81361945|sp|Q5PN01|RUVA_SALPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226698738|sp|B5F3J6|RUVA_SALA4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226698739|sp|B5FSN7|RUVA_SALDC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226698740|sp|B5R1V8|RUVA_SALEP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226698741|sp|B5R8E2|RUVA_SALG2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560123|sp|B4T7Z3|RUVA_SALHS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560124|sp|B4SVE5|RUVA_SALNS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560125|sp|B5BH60|RUVA_SALPK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|25299990|pir||AC0743 Holliday junction DNA helicase [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16420431|gb|AAL20811.1| Holliday junction helicase subunit A [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16503142|emb|CAD05646.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica serovar Typhi] gi|29137090|gb|AAO68654.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56127443|gb|AAV76949.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|194404760|gb|ACF64982.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194410102|gb|ACF70321.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194457673|gb|EDX46512.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195634327|gb|EDX52679.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197093589|emb|CAR59052.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197211684|gb|ACH49081.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197241778|gb|EDY24398.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197936991|gb|ACH74324.1| holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199602057|gb|EDZ00603.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205272180|emb|CAR37038.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205327892|gb|EDZ14656.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205331994|gb|EDZ18758.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205339435|gb|EDZ26199.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205342743|gb|EDZ29507.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205350710|gb|EDZ37341.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206708387|emb|CAR32691.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261247066|emb|CBG24885.1| Holliday junction DNA helicase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993877|gb|ACY88762.1| Holliday junction DNA helicase motor protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158416|emb|CBW17923.1| Holliday junction DNA helicase ruvA [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912889|dbj|BAJ36863.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320085488|emb|CBY95269.1| Holliday junction ATP-dependent DNA helicase ruvA [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321224538|gb|EFX49601.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323130179|gb|ADX17609.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326627451|gb|EGE33794.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332988789|gb|AEF07772.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 203 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 97/204 (47%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREELGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAVDLVLTSPASPTSEDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + A +IR ALRA Sbjct: 181 VSKIAR---PDASSETLIRDALRA 201 >gi|168238525|ref|ZP_02663583.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194736016|ref|YP_002114930.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|204930984|ref|ZP_03221810.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|229560126|sp|B4TYR8|RUVA_SALSV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|194711518|gb|ACF90739.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288628|gb|EDY28003.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204320028|gb|EDZ05233.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322616895|gb|EFY13803.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618133|gb|EFY15025.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625804|gb|EFY22623.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626256|gb|EFY23066.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632670|gb|EFY29415.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639014|gb|EFY35707.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640454|gb|EFY37107.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644219|gb|EFY40764.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649542|gb|EFY45974.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655449|gb|EFY51757.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660228|gb|EFY56466.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662909|gb|EFY59116.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668094|gb|EFY64253.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674146|gb|EFY70240.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675500|gb|EFY71574.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683086|gb|EFY79102.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686780|gb|EFY82758.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195329|gb|EFZ80509.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199221|gb|EFZ84316.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204054|gb|EFZ89069.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207477|gb|EFZ92425.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210663|gb|EFZ95541.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217461|gb|EGA02180.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221952|gb|EGA06342.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224438|gb|EGA08726.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231483|gb|EGA15596.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235925|gb|EGA20004.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240495|gb|EGA24538.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245387|gb|EGA29387.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247807|gb|EGA31745.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253606|gb|EGA37434.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255035|gb|EGA38823.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260268|gb|EGA43889.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266859|gb|EGA50345.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269065|gb|EGA52521.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 203 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 96/204 (47%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREELGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAVDLVLTSPASPGSEDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + A +IR ALRA Sbjct: 181 VSKIAR---PDASSETLIRDALRA 201 >gi|237809451|ref|YP_002893891.1| Holliday junction DNA helicase RuvA [Tolumonas auensis DSM 9187] gi|259495658|sp|C4LBN1|RUVA_TOLAT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|237501712|gb|ACQ94305.1| Holliday junction DNA helicase RuvA [Tolumonas auensis DSM 9187] Length = 206 Score = 182 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 54/208 (25%), Positives = 98/208 (47%), Gaps = 6/208 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G I +L+DV GV Y + P+ L +G T+ +R+D L Sbjct: 1 MIGRLHGIIIEKSPPEILLDVGGVGYELQLPMTCFYELPAVGQEATIITHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ ++S ++A + V + ++ + ++PG+ K Sbjct: 61 YGFNTRQERTLFRELLKANGVGPKLALAIMSGMSANQFVSCVEREDVSSLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL---SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ E+K + + + + + A++AL+ LGY QA Sbjct: 121 AERLIVEMKDRLKGWISHDLFTPYTDAAPVDHEPSLAPADTVESEAVAALLALGYKPQQA 180 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 + V V+K E +IR ALR++ Sbjct: 181 SLVVSKVIKPE---MTVENVIREALRSM 205 >gi|167552471|ref|ZP_02346224.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205322886|gb|EDZ10725.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 203 Score = 182 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 98/204 (48%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G I VL++ GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRIRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREELGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L+ + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGLNGDLFTPAVDLVLTSPASPTSEDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + A +IR ALRA Sbjct: 181 VSKIAR---PDASSETLIRDALRA 201 >gi|89075787|ref|ZP_01162175.1| Holliday junction DNA helicase motor protein [Photobacterium sp. SKA34] gi|89048519|gb|EAR54094.1| Holliday junction DNA helicase motor protein [Photobacterium sp. SKA34] Length = 207 Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats. Identities = 59/209 (28%), Positives = 99/209 (47%), Gaps = 7/209 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VL++V G+ Y + P+ L +IG +F +R+D L Sbjct: 1 MIGRLRGIVIEKQPPEVLLEVGGIGYEVQMPMSCFYELPQIGQEAIIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F + GVG ++ + +LS +TA++ V S+ L++ + +IPG+ K Sbjct: 61 YGFNKKSERELFREVIKANGVGPKLGLAILSAMTASQFVRSVELEDVTTLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSS----VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ E+K + D + N + A+SALV LGY Sbjct: 121 AERLVVEMKDRLKGWGEGDLFTPTLDTAASNAPIQDPSNQARAEDEAVSALVALGYKPQI 180 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A V V + E IIR ALR++ Sbjct: 181 AAKVVSQVTQPE---MSSEAIIRDALRSM 206 >gi|90580117|ref|ZP_01235925.1| Holliday junction DNA helicase motor protein [Vibrio angustum S14] gi|90439002|gb|EAS64185.1| Holliday junction DNA helicase motor protein [Vibrio angustum S14] Length = 207 Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats. Identities = 59/209 (28%), Positives = 99/209 (47%), Gaps = 7/209 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VL++V G+ Y + P+ L +IG +F +R+D L Sbjct: 1 MIGRLRGIVIEKQPPEVLLEVGGIGYEVQMPMSCFYELPQIGQEAIIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F + GVG ++ + +LS +TA++ V S+ L++ + +IPG+ K Sbjct: 61 YGFNKKSERELFREVIKANGVGPKLGLAILSAMTASQFVRSVELEDVTTLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSS----VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ E+K + D + N + A+SALV LGY Sbjct: 121 AERLVVEMKDRLKGWGEGDLFTPALDTAASNAPIQDPSNQARAEDEAVSALVALGYKPQI 180 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A V V + E IIR ALR++ Sbjct: 181 AAKVVSQVTQPE---MSSEAIIRDALRSM 206 >gi|213649641|ref|ZP_03379694.1| Holliday junction DNA helicase motor protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 203 Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats. Identities = 54/204 (26%), Positives = 96/204 (47%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREELGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + + + + A++ALV LGY +A+ Sbjct: 121 AERLIVEMKDRFKGPHGDLFTPAVDLVLTSPASPTSEDAEQEAVAALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + + A +IR ALRA Sbjct: 181 VSKIAR---PDASSETLIRDALRA 201 >gi|197335439|ref|YP_002155714.1| holliday junction DNA helicase RuvA [Vibrio fischeri MJ11] gi|226698745|sp|B5FCQ1|RUVA_VIBFM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|197316929|gb|ACH66376.1| holliday junction DNA helicase RuvA [Vibrio fischeri MJ11] Length = 207 Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats. Identities = 55/209 (26%), Positives = 104/209 (49%), Gaps = 7/209 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++GN+ +LI+V G+ Y + P+ L ++G ++ +R+D L Sbjct: 1 MIGRLRGNLLEKQPPELLIEVSGIGYEVQMPMSCFYELPEVGSEAIIYTHYVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ + +LS +TA + V+S+ ++ + ++PG+ K Sbjct: 61 YGFNTKNERALFREVIKANGVGPKLGLAILSGMTAAQFVQSVEREDISTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSS----VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ E+K + + D + ++ I S S A+SAL+ LGY Q Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPATDAAPMDDGSEFITSPQSAVDEAVSALIALGYKPQQ 180 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ V V K +IR +L+++ Sbjct: 181 ASKTVSQVAK---PDMTSEVLIRESLKSM 206 >gi|260779157|ref|ZP_05888049.1| holliday junction DNA helicase RuvA [Vibrio coralliilyticus ATCC BAA-450] gi|260605321|gb|EEX31616.1| holliday junction DNA helicase RuvA [Vibrio coralliilyticus ATCC BAA-450] Length = 224 Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats. Identities = 52/206 (25%), Positives = 99/206 (48%), Gaps = 5/206 (2%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 IG+++G + +LI+V G+ Y + P+ L IG+ ++ +R+D L+ Sbjct: 21 IGRLRGILLEKQPPELLIEVNGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLLY 80 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF + +R F + GVG ++ +G+LS +TA++ V + ++ + ++PG+ K A Sbjct: 81 GFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDISTLVKLPGVGKKTA 140 Query: 122 SRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 R++ E+K + + + A + AISAL+ LGY QA+ Sbjct: 141 ERLVVEMKDRLKGWGAGDLFTPHTDAAPVDSAPQVDQANAEEEAISALLALGYKPTQASK 200 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 V V + ++IR AL+++ Sbjct: 201 VVSQVKTAD---MSSEELIREALKSM 223 >gi|254292161|ref|ZP_04962932.1| Holliday junction DNA helicase RuvA [Vibrio cholerae AM-19226] gi|150421924|gb|EDN13900.1| Holliday junction DNA helicase RuvA [Vibrio cholerae AM-19226] Length = 204 Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats. Identities = 50/206 (24%), Positives = 101/206 (49%), Gaps = 4/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI++ G+ Y + P+ + L IG+ ++ +R+D L Sbjct: 1 MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ + +LS +TA + V + ++ + ++PG+ K Sbjct: 61 YGFNTVNERALFREVIKANGVGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSV-VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + + + + + + A+SAL+ LGY QA+ Sbjct: 121 AERLVVEMKDRLKGWGAADLFTPATDAAPVDSTPVIAQNAQEEAMSALLALGYKPPQASK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 A+ V K ++IR AL+++ Sbjct: 181 ALSQVAKA---GMSSEELIREALKSM 203 >gi|330445532|ref|ZP_08309184.1| Holliday junction DNA helicase RuvA [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489723|dbj|GAA03681.1| Holliday junction DNA helicase RuvA [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 207 Score = 181 bits (459), Expect = 5e-44, Method: Composition-based stats. Identities = 58/209 (27%), Positives = 99/209 (47%), Gaps = 7/209 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VL++V G+ Y + P+ L +IG +F +R+D L Sbjct: 1 MIGRLRGIVIEKQPPEVLLEVGGIGYEVQMPMSCFYELPEIGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F + GVG ++ + +LS +TA++ V S+ L++ + +IPG+ K Sbjct: 61 YGFNKKSERELFREVIKANGVGPKLGLAILSAMTASQFVRSVELEDVTTLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSS----VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ E+K + D + N + A+SAL+ LGY Sbjct: 121 AERLVVEMKDRLKGWGEGDLFTPALDTAASNAPIQDPANQARAEDEAVSALIALGYKPQI 180 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A V V + E IIR ALR++ Sbjct: 181 AAKVVSQVTQPE---MSSEAIIRDALRSM 206 >gi|238756969|ref|ZP_04618157.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia aldovae ATCC 35236] gi|238704799|gb|EEP97328.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia aldovae ATCC 35236] Length = 205 Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 102/206 (49%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y + P+ L +G +F + +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLETNGVGYEVQLPMTCFYELPNVGQEAIIFTQFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V ++ ++ + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC--SMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + L+ + + + ++ S A SALV LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNTGDIQLPASNSSQISDADIEAEAASALVALGYKPQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 V + K AD +IR ALR+ Sbjct: 181 RLVSKIAK---PGADCETLIRDALRS 203 >gi|59711558|ref|YP_204334.1| Holliday junction DNA helicase motor protein [Vibrio fischeri ES114] gi|71649480|sp|Q5E6A0|RUVA_VIBF1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|59479659|gb|AAW85446.1| component of RuvABC resolvasome, regulatory subunit [Vibrio fischeri ES114] Length = 207 Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats. Identities = 54/209 (25%), Positives = 104/209 (49%), Gaps = 7/209 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++GN+ +LI+V G+ Y + P+ L ++G ++ +R+D L Sbjct: 1 MIGRLRGNLLEKQPPELLIEVSGIGYEVQMPMSCFYELPEVGSEAIIYTHYVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ + +LS +TA + V+S+ ++ + ++PG+ K Sbjct: 61 YGFNTKNERALFREVIKANGVGPKLGLAILSGMTAAQFVQSVEREDISTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSS----VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ E+K + + D + ++ I S S A+SAL+ LGY Q Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPATDAAPMDDGSEFITSPQSAVDEAVSALIALGYKPQQ 180 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ V + K +IR +L+++ Sbjct: 181 ASKTVSQIAK---PDMTSEVLIRESLKSM 206 >gi|308049716|ref|YP_003913282.1| Holliday junction DNA helicase subunit RuvA [Ferrimonas balearica DSM 9799] gi|307631906|gb|ADN76208.1| Holliday junction DNA helicase subunit RuvA [Ferrimonas balearica DSM 9799] Length = 207 Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats. Identities = 57/209 (27%), Positives = 106/209 (50%), Gaps = 7/209 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + V+++ GV Y + P+ + L ++G +F +R+D L Sbjct: 1 MIGRLRGLLVEKAAPEVVLECGGVGYEVQLPMTSFYQLPELGSEAVIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L GVG ++A+G+LS ++A + V+++ +N + ++PG+ K Sbjct: 61 YGFASKEERALFRELIKTNGVGPKMALGILSGMSAEQFVDAVQAENITGLTKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQD----MSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ E++ + + + ++ N + + S P +AI+ALV LGY Sbjct: 121 AERLVVEMRDRLKNFGGPLLTPYADRLAGTNPTENTLVSAPDPEEDAIAALVALGYKAPA 180 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ V V Q+IR AL+A+ Sbjct: 181 ASKVVAKVAA---PGMSSEQLIRDALKAM 206 >gi|256823080|ref|YP_003147043.1| Holliday junction DNA helicase RuvA [Kangiella koreensis DSM 16069] gi|256796619|gb|ACV27275.1| Holliday junction DNA helicase RuvA [Kangiella koreensis DSM 16069] Length = 205 Score = 181 bits (458), Expect = 7e-44, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 101/207 (48%), Gaps = 4/207 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG+I+G + +V+I+ GV Y I P+ T L + G+ L + ++ Sbjct: 1 MIGRIRGTLIEKIPPFVIIETTAGVGYEIQVPMTTFYQLPEEGEQAILSTHMSIAENLHA 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF+S DR F L V GVG ++A+ +LS + E V ++ N + ++PG+ K Sbjct: 61 LYGFISTKDRALFRELIKVNGVGPKLALAILSGMETDEFVMTVHDGNVDRLVKLPGVGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+ + S S ++ + + A+SAL+ LGY A+ Sbjct: 121 TAERLLVEMSDRLKDWSISAGLPSSQPSEASIAQTAKTDASQEAVSALIALGYKPQIASK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV V + A ++IRLALR ++ Sbjct: 181 AVTQVAH---DDAKSEELIRLALRQLA 204 >gi|229470526|sp|B4RTT9|RUVA_ALTMD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA Length = 206 Score = 181 bits (458), Expect = 7e-44, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 100/207 (48%), Gaps = 6/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + +L+DV GV Y I+ P+ + L +G+ ++ +R+D L Sbjct: 1 MIGRIRGTLAEKQPPEILVDVAGVGYEIHMPMTSFYQLPAVGEEVVVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++R F L GVG ++ + +LS ++A + + S+ ++ +A +PGI K Sbjct: 61 FGFADKMERGLFRELIKANGVGPKLGLAILSGMSAGQFLASVQNEDVSALASLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLS---SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ ELK + S+ S I + A SAL+ LGY QA Sbjct: 121 AERLVVELKDRLAKFGKAQSIAVPPPSGDLLSPNTIVEVNDAREEAQSALIALGYKPAQA 180 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRA 204 + V SV + +IR AL+A Sbjct: 181 SKLVESVYSEGMES---EALIREALKA 204 >gi|238754860|ref|ZP_04616210.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia ruckeri ATCC 29473] gi|238706871|gb|EEP99238.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia ruckeri ATCC 29473] Length = 204 Score = 181 bits (458), Expect = 7e-44, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G I VL++ GV Y I P+ L +IG +F + +R+D L Sbjct: 1 MIGRIRGIILEKQPPLVLLETNGVGYEIQLPMTCFYELPEIGQEAIIFTQFIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V ++ + + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAVEREEITTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN-KEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + L+ + + S + + S A+SALV+LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNTSDIPLPTTSAQVSAADAEAEAVSALVSLGYKPQEASR 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V + K D +IR ALR+ Sbjct: 181 LVSKIAK---PGTDCETLIRDALRS 202 >gi|209695355|ref|YP_002263284.1| Holliday junction DNA helicase RuvA [Aliivibrio salmonicida LFI1238] gi|226698724|sp|B6EGJ3|RUVA_ALISL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|208009307|emb|CAQ79573.1| holliday junction ATP-dependent DNA helicase RuvA [Aliivibrio salmonicida LFI1238] Length = 206 Score = 181 bits (458), Expect = 8e-44, Method: Composition-based stats. Identities = 56/208 (26%), Positives = 106/208 (50%), Gaps = 6/208 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++GN+ +LI+V G+ Y + P+ L IG +++ +R+D L Sbjct: 1 MIGRLRGNLLEKQPPELLIEVSGIGYEVQMPMSCFYELPPIGTEAIIYIHYVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ + +LS +TA++ V+S+ ++ + ++PG+ K Sbjct: 61 YGFNTKKERALFREVIKANGVGPKLGLAILSGMTASQFVQSVEREDISTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSS---VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ E+K + + D + ++ I S S A+SAL++LGY QA Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPADTTSMDDASDLISSPQSAQDEAVSALISLGYKPVQA 180 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 + V V K +IR +L+++ Sbjct: 181 SKMVSQVAK---PDMTSESLIRESLKSM 205 >gi|123442635|ref|YP_001006612.1| Holliday junction DNA helicase RuvA [Yersinia enterocolitica subsp. enterocolitica 8081] gi|166231457|sp|A1JRJ9|RUVA_YERE8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|122089596|emb|CAL12445.1| Holliday junction DNA helicase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 205 Score = 181 bits (458), Expect = 8e-44, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y + P+ L IG +F + +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLETNGVGYEVQLPMTCFYELPDIGQEAIIFTQFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V ++ ++ + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC--SMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + L+ + + + ++ S A SALV LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNTGDIQLPASNSSQISDADIEAEAASALVALGYKPQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 V + K AD +IR ALRA Sbjct: 181 RLVSKIAK---PGADCETLIRDALRA 203 >gi|153839740|ref|ZP_01992407.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus AQ3810] gi|149746738|gb|EDM57726.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus AQ3810] Length = 204 Score = 180 bits (457), Expect = 8e-44, Method: Composition-based stats. Identities = 54/206 (26%), Positives = 102/206 (49%), Gaps = 4/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLI++ G+ Y + P+ L IG+ ++ +R+D L Sbjct: 1 MIGRLRGILLEKQPPEVLIEINGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TA++ V + ++ + ++PG+ K Sbjct: 61 YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDVSTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + + + + + S S A+SAL+ LGY QA+ Sbjct: 121 AERLVVEMKDRLKGWGAGDLFTPFTDAAPTDSAAASSNSAEEEAVSALLALGYKPTQASK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 V + K Q+IR AL+++ Sbjct: 181 VVSQIAK---PDMSSEQLIREALKSM 203 >gi|90408541|ref|ZP_01216698.1| holliday junction DNA helicase RuvA [Psychromonas sp. CNPT3] gi|90310360|gb|EAS38488.1| holliday junction DNA helicase RuvA [Psychromonas sp. CNPT3] Length = 207 Score = 180 bits (457), Expect = 9e-44, Method: Composition-based stats. Identities = 59/209 (28%), Positives = 104/209 (49%), Gaps = 7/209 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VL+DV GV Y I P+ + L ++G ++ +R+D L Sbjct: 1 MIGRLRGVLLEKQPPEVLLDVSGVGYEIQLPMSSFYPLPEVGQEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F LL V GVG ++A+ +LS ++A E V I + + ++PG+ K Sbjct: 61 YGFADKHERAMFRLLIKVNGVGPKLALAILSGMSANEFVVCINNEAVSQLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSS----VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ E+K + + Q + + ++ S+ + AISAL+ LGY Sbjct: 121 AERLVVEMKDRLKNWVGTDLLSPQAESMDMQNGLSNTLSINTAKDEAISALLALGYKPAS 180 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A + +V + D +IR AL+++ Sbjct: 181 AEKCIRNVYQA---GMDCEDLIRSALKSM 206 >gi|238751590|ref|ZP_04613080.1| Holliday junction DNA helicase RuvA [Yersinia rohdei ATCC 43380] gi|238710152|gb|EEQ02380.1| Holliday junction DNA helicase RuvA [Yersinia rohdei ATCC 43380] Length = 204 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y + P+ L ++G +F + +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLETNGVGYEVQLPMTCFYELPELGQEAIIFTQFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V ++ ++ + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREDITTLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN-KEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + L+ + + + A S A SALV LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNTGDIQLPASAAKTSDADIEAEAASALVALGYKPQEASR 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V + K AD +IR ALRA Sbjct: 181 LVGKIAK---PGADCETLIRDALRA 202 >gi|126174263|ref|YP_001050412.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS155] gi|153000824|ref|YP_001366505.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS185] gi|160875532|ref|YP_001554848.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS195] gi|217973219|ref|YP_002357970.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS223] gi|304408864|ref|ZP_07390485.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS183] gi|307302867|ref|ZP_07582622.1| Holliday junction DNA helicase RuvA [Shewanella baltica BA175] gi|166200260|sp|A3D480|RUVA_SHEB5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166200261|sp|A6WNQ3|RUVA_SHEB8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189045769|sp|A9L3H8|RUVA_SHEB9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254767386|sp|B8EA74|RUVA_SHEB2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|125997468|gb|ABN61543.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS155] gi|151365442|gb|ABS08442.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS185] gi|160861054|gb|ABX49588.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS195] gi|217498354|gb|ACK46547.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS223] gi|304352685|gb|EFM17082.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS183] gi|306913227|gb|EFN43649.1| Holliday junction DNA helicase RuvA [Shewanella baltica BA175] gi|315267720|gb|ADT94573.1| Holliday junction DNA helicase RuvA [Shewanella baltica OS678] Length = 205 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 107/207 (51%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LIDV GV Y + P+ + L ++ ++ +R+D L Sbjct: 1 MIGRLRGVLVEKQAPEILIDVNGVGYELQMPLTSFYELPEVNHETMVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ +R F LL GVG ++A+ +LS +TA E V + + + ++PG+ K Sbjct: 61 YGFITKQERALFRLLIKTNGVGPKLALTILSGMTAGEFVGCVERDDIVTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQD--MSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E++ K SL + + ++ S +AISAL++LGY QA+ Sbjct: 121 AERLLVEMRDKLKSLMEASAGSEREFVLQSNYSPAPTVNSAEEDAISALISLGYKPPQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 +V + K+ D +I+ AL+++ Sbjct: 181 KSVSAAYKE---GMDSETLIKAALKSM 204 >gi|239995979|ref|ZP_04716503.1| Holliday junction DNA helicase motor protein [Alteromonas macleodii ATCC 27126] Length = 206 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 102/207 (49%), Gaps = 6/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + +L+DV GV Y I+ P+ + L +G+ ++ +R+D L Sbjct: 1 MIGRIRGTLAEKQPPEILVDVAGVGYEIHMPMTSFYQLPAVGEEVVVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++R F L GVG ++ + +LS ++A++ + S+ ++ + +PGI K Sbjct: 61 FGFADKMERGLFRELIKANGVGPKLGLAILSGMSASQFLASVQNEDVSALVSLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLS---SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ ELK + S+ S I ++ A SAL+ LGY QA Sbjct: 121 AERLVVELKDRLAKFGKAQSIAVPPPSGDLLSTNTIVAVNDAREEAQSALIALGYKPAQA 180 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRA 204 + V SV K+ +IR +L+A Sbjct: 181 SKLVDSVYKEGMES---EALIRESLKA 204 >gi|260598336|ref|YP_003210907.1| Holliday junction DNA helicase RuvA [Cronobacter turicensis z3032] gi|260217513|emb|CBA31691.1| Holliday junction ATP-dependent DNA helicase ruvA [Cronobacter turicensis z3032] Length = 203 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 58/204 (28%), Positives = 101/204 (49%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VL++ GV Y I+ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIVLEKQPPLVLLEAGGVGYEIHMPMTCFYELPETGKEAVVFTHFVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L V GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 FGFNNKQERTLFRELIKVNGVGPKLALAILSGMSAQQFVNAVEREEPAALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + ++ A++ALV+LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLHGDLFTPAADLVLTSPASPAVDDAEAEAVAALVSLGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V V + A +IR ALRA Sbjct: 181 VSKVAQ---PDASSETLIREALRA 201 >gi|292488538|ref|YP_003531422.1| Holliday junction ATP-dependent DNA helicase ruvA [Erwinia amylovora CFBP1430] gi|292899714|ref|YP_003539083.1| holliday junction DNA helicase [Erwinia amylovora ATCC 49946] gi|291199562|emb|CBJ46679.1| holliday junction DNA helicase [Erwinia amylovora ATCC 49946] gi|291553969|emb|CBA21014.1| Holliday junction ATP-dependent DNA helicase ruvA [Erwinia amylovora CFBP1430] gi|312172681|emb|CBX80937.1| Holliday junction ATP-dependent DNA helicase ruvA [Erwinia amylovora ATCC BAA-2158] Length = 204 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 96/205 (46%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+ GV Y + P+ L I +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPAVLIEASGVGYEVQMPMTCFYELPDIRQEAVIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L V GVG ++A+ +LS ++A + V ++ + ++PG+ K Sbjct: 61 FGFNSKPERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVERGEIAALVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVV-QQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + + + D + + A++AL LGY +A+ Sbjct: 121 AERLVVEMKDRFKGMHGDLFASDAPFALTSEMPKETGNDAESEAVAALTALGYKPQEASR 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + + K AD +IR ALRA Sbjct: 181 MIGKI---GKPDADCETLIREALRA 202 >gi|291617754|ref|YP_003520496.1| RuvA [Pantoea ananatis LMG 20103] gi|291152784|gb|ADD77368.1| RuvA [Pantoea ananatis LMG 20103] Length = 204 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 100/205 (48%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L + +F + +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLEAHGVGYEVHMPMTCFYELPDLNHEAVIFTQFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L V GVG ++A+ +LS ++A + V ++ + + ++PG+ K Sbjct: 61 FGFNSKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVEKEEIAALVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVV-QQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + + + D + A++ALV+LGY +A+ Sbjct: 121 AERLVVEMKDRFKGMHGDLFGGDSAFTLTTPGPEPETNDAESEAVAALVSLGYKPQEASR 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + V + AD +IR ALRA Sbjct: 181 MISKVGR---PDADCETLIREALRA 202 >gi|318605500|emb|CBY26998.1| holliday junction DNA helicase RuvA [Yersinia enterocolitica subsp. palearctica Y11] Length = 205 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y + P+ L IG +F + +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLETNGVGYEVQLPMTCFYELPDIGQEAIIFTQFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V ++ ++ + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC--SMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + L+ + + + ++ S A SALV LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNTGDIQLPASNSSQISEADIEAEAASALVALGYKPQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 V + K AD +IR ALRA Sbjct: 181 RLVSKIAK---PGADCEALIRDALRA 203 >gi|114563352|ref|YP_750865.1| Holliday junction DNA helicase RuvA [Shewanella frigidimarina NCIMB 400] gi|122299598|sp|Q081N8|RUVA_SHEFN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|114334645|gb|ABI72027.1| Holliday junction DNA helicase RuvA [Shewanella frigidimarina NCIMB 400] Length = 205 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 107/207 (51%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + V++DV GV Y + P+ + L + LF +R+D L Sbjct: 1 MIGRLSGILVEKQAPEVVLDVNGVGYELQVPMTSFYELPALNQAAMLFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ +R F LL GVG ++A+ +LS +TA+E V + + + ++PG+ K Sbjct: 61 YGFITKQERALFRLLIKTNGVGPKLALTILSGMTASEFVSCVERDDIATLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E++ K SL +S + + ++ S +AISAL++LGY QA+ Sbjct: 121 AERLVIEMRDKLKSLLEASAGSEREFMLQSNYTPAAAVDSAEEDAISALLSLGYKPAQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 +V + K+ +I+ AL+++ Sbjct: 181 KSVSAAFKE---GMSSETLIKAALKSM 204 >gi|145297804|ref|YP_001140645.1| Holliday junction DNA helicase RuvA [Aeromonas salmonicida subsp. salmonicida A449] gi|166229628|sp|A4SJ25|RUVA_AERS4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|142850576|gb|ABO88897.1| holliday junction DNA helicase RuvA [Aeromonas salmonicida subsp. salmonicida A449] Length = 204 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 101/206 (49%), Gaps = 4/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VL++V G+ Y + P+ L +IG T+ +R+D L Sbjct: 1 MIGRLRGVVIEKQPPEVLLEVGGLGYEVQMPMSCFYDLPEIGKEVTIHTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L GVG ++A+ +LS +TAT+ V S+ + + ++PG+ K Sbjct: 61 YGFNHKQERALFRELIKTNGVGPKLALAILSGMTATQFVLSVEREEISSLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQ-AHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + S + ++ + P + A SALV LGY QA+ Sbjct: 121 AERLVVEMKDRLKGWVSHDLFSPAEISLPARESVLRAPDSSEEAASALVALGYKPQQASQ 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 V + K+ IIR +LR++ Sbjct: 181 IVSKIAKE---GMSVEDIIRESLRSL 203 >gi|90411664|ref|ZP_01219674.1| Holliday junction DNA helicase motor protein [Photobacterium profundum 3TCK] gi|90327554|gb|EAS43907.1| Holliday junction DNA helicase motor protein [Photobacterium profundum 3TCK] Length = 206 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 58/208 (27%), Positives = 98/208 (47%), Gaps = 6/208 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G I VLIDV G+ Y + P+ L ++G + +R+D L Sbjct: 1 MIGRLSGTILEKQPPEVLIDVGGIGYEVQMPMSCFYELPEVGQAAVICTHFIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F + GVG ++ + +LS +TA++ V S+ ++ + +IPG+ K Sbjct: 61 YGFNKKSERELFREVIKANGVGPKLGLAILSAMTASQFVLSVENEDITTLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSS---VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ E++ + + + + S A+SAL+ LGY QA Sbjct: 121 AERLVIEMRDRLKGWGEGDLFTPASDAAASNAEVQQYSSARAEDEAVSALIALGYKAPQA 180 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 V V+K E IIR ALR++ Sbjct: 181 AKVVSQVVKPE---MSSENIIREALRSM 205 >gi|127513004|ref|YP_001094201.1| Holliday junction DNA helicase RuvA [Shewanella loihica PV-4] gi|166200262|sp|A3QEP4|RUVA_SHELP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|126638299|gb|ABO23942.1| Holliday junction DNA helicase RuvA [Shewanella loihica PV-4] Length = 205 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 57/207 (27%), Positives = 106/207 (51%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLI+ GV Y + P+ + L ++ ++ +R+D L Sbjct: 1 MIGRLRGLLVEKQAPEVLIETGGVGYEVQMPLTSFYELPELNQEAVIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ +R F LL GVG ++A+ +LS +TA E V+ + + + ++PG+ K Sbjct: 61 YGFITKQERALFRLLIKTNGVGPKLALTILSGMTAGEFVKCVEHDDIATLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQD--MSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E++ K SL + + + + +AISAL+ LGY QA+ Sbjct: 121 AERLLVEMRDKLKSLMEASHGNEREFVLQSNYTPAPVVNTAEEDAISALLALGYKPAQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 AV SV ++ D +I+ +L+++ Sbjct: 181 KAVSSVFEE---GMDSETLIKASLKSM 204 >gi|312882586|ref|ZP_07742326.1| Holliday junction DNA helicase RuvA [Vibrio caribbenthicus ATCC BAA-2122] gi|309369746|gb|EFP97258.1| Holliday junction DNA helicase RuvA [Vibrio caribbenthicus ATCC BAA-2122] Length = 205 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 53/207 (25%), Positives = 103/207 (49%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI+V G+ Y + P+ L IG+ ++ +R+D L Sbjct: 1 MIGRLRGILVEKQPPELLIEVNGLGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TA++ V S+ ++ + ++PG+ K Sbjct: 61 YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVASVEREDISTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + + ++ S+ + A+SAL+ LGY QA+ Sbjct: 121 AERLVVEMKDRLKGWSAGDLFTPYTDAAVADKLPESSVSNAEEEAVSALLALGYKPTQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 V V+ ++IR AL+++ Sbjct: 181 KVVSQVM---VEGMSSEKLIREALKSM 204 >gi|156933560|ref|YP_001437476.1| Holliday junction DNA helicase RuvA [Cronobacter sakazakii ATCC BAA-894] gi|166230549|sp|A7MEA2|RUVA_ENTS8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|156531814|gb|ABU76640.1| hypothetical protein ESA_01380 [Cronobacter sakazakii ATCC BAA-894] Length = 203 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 102/204 (50%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VL++ GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIVLEKQPPLVLLEAGGVGYEVHMPMTCFYELPETGKEAVVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L V GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 FGFNNKQERTLFRELIKVNGVGPKLALAILSGMSAQQFVNAVEREEPAALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L + + + ++ A++ALV+LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLHGDLFTPAADLVLTSPASPAVDDAEAEAVAALVSLGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V V + + A +IR ALRA Sbjct: 181 VSKVAQAD---ASSETLIREALRA 201 >gi|167623851|ref|YP_001674145.1| Holliday junction DNA helicase RuvA [Shewanella halifaxensis HAW-EB4] gi|189045770|sp|B0TSA6|RUVA_SHEHH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|167353873|gb|ABZ76486.1| Holliday junction DNA helicase RuvA [Shewanella halifaxensis HAW-EB4] Length = 205 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 109/207 (52%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + VL+DV GV Y I P+ + L ++G ++ +R+D L Sbjct: 1 MIGRIRGLLIEKQAPEVLVDVSGVGYEIQMPLTSFYELPELGQEAVIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+S +R F LL GVG ++ + +LS +TA E V + + + ++PG+ K Sbjct: 61 YGFISKQERSLFRLLIKANGVGPKLGLTILSGMTAREFVACVERDDIATLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E++ K SL +SV + + ++ + +AI+AL++LGY QA+ Sbjct: 121 AERLLVEMRDKLKSLMEASVGSEREFMLQSNYTAPEAVNTAEEDAIAALLSLGYKPAQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 AV SV + +I+ AL+++ Sbjct: 181 KAVSSVYT---DGMSSETLIKSALKSM 204 >gi|325274574|ref|ZP_08140632.1| Holliday junction DNA helicase RuvA [Pseudomonas sp. TJI-51] gi|324100301|gb|EGB98089.1| Holliday junction DNA helicase RuvA [Pseudomonas sp. TJI-51] Length = 205 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 111/205 (54%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +++IDV GV Y + P+ TL L K+G+ T+ +R+D L Sbjct: 1 MIGRLRGTLAEKQPPHLIIDVNGVGYELEVPMTTLYRLPKVGETVTVHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + ++PG+ K Sbjct: 61 YGFAEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALVRVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + + V+ S S +AISALV+LGY +A+ A Sbjct: 121 AERLLVELKDRFKAW-ETSPAMFTLVSDGPLPAASASSAEADAISALVSLGYKPQEASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ K+K ++IR +L+ + Sbjct: 180 IAAI--KDKAGLSSEELIRRSLKGM 202 >gi|119774975|ref|YP_927715.1| Holliday junction DNA helicase RuvA [Shewanella amazonensis SB2B] gi|166200259|sp|A1S6N9|RUVA_SHEAM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|119767475|gb|ABM00046.1| Holliday junction DNA helicase RuvA [Shewanella amazonensis SB2B] Length = 205 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 108/207 (52%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++KG + + VLIDV GV Y + P+ + L G ++ +R+D L Sbjct: 1 MIGRLKGILVEKHAPEVLIDVGGVGYELQMPLTSFYELPLPGAEVIVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ +R F LL GVG ++A+ +LS +TA E + + + + ++PG+ K Sbjct: 61 YGFIHKEERSLFRLLIKANGVGPKLALTILSGMTAKEFIGCLERDDIATLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E++ K SL +S+ + + + +AI+AL++LGY QA+ Sbjct: 121 AERLLVEMRDKLKSLMEASMGAEREFVLKSNFTPAPVAATVEEDAIAALLSLGYKPQQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 AV S ++ D Q+I+ AL+++ Sbjct: 181 KAVSSAFQE---GMDPEQLIKAALKSM 204 >gi|332161518|ref|YP_004298095.1| Holliday junction DNA helicase RuvA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325665748|gb|ADZ42392.1| Holliday junction DNA helicase RuvA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860793|emb|CBX71080.1| holliday junction ATP-dependent DNA helicase ruvA [Yersinia enterocolitica W22703] Length = 205 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y + P+ L IG +F + +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLETNGVGYEVQLPMTCFYELPDIGQEAIIFTQFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V ++ ++ + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC--SMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + L+ + ++ + ++ S A SALV LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNIGDIQLPASNSSQISEADIEAEAASALVALGYKPQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 V + K AD +IR ALRA Sbjct: 181 RLVSKIAK---PGADCEALIRDALRA 203 >gi|85059239|ref|YP_454941.1| Holliday junction DNA helicase motor protein [Sodalis glossinidius str. 'morsitans'] gi|123752615|sp|Q2NTI9|RUVA_SODGM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|84779759|dbj|BAE74536.1| holliday junction DNA helicase RuvA [Sodalis glossinidius str. 'morsitans'] Length = 205 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 98/206 (47%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPQVLLETHGVGYEVFMPMTCFYALPETGQEAVIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+ +R F L V GVG ++A+ +LS ++A + + ++ Q + ++PG+ K Sbjct: 61 FGFIHKQERVLFRELIKVNGVGPKLALAILSGMSAQQFISAVERQEINALVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM--PSFAINAISALVNLGYGQDQAT 178 A R++ E+K + LS + A A++ALV LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLSGDLFVPQGAGEIPAAIDAPAMPADPEGEAVAALVALGYKPQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 V V +D +IR ALRA Sbjct: 181 RMVSKVASA---GSDCEMLIRDALRA 203 >gi|300023944|ref|YP_003756555.1| Holliday junction DNA helicase RuvA [Hyphomicrobium denitrificans ATCC 51888] gi|299525765|gb|ADJ24234.1| Holliday junction DNA helicase RuvA [Hyphomicrobium denitrificans ATCC 51888] Length = 205 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 83/206 (40%), Positives = 124/206 (60%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ + E ++++DV GV Y + RTL L K GD TL ++TH+R+D IRL Sbjct: 1 MIGKLKGKVDAIGESFLIVDVHGVGYEVQASSRTLRNL-KPGDDVTLTIDTHVREDAIRL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S+ +R WF LQ++QGVGA+VA+ VL + E+ +++L N + + PG+ K+ Sbjct: 60 FGFQSEFERSWFRTLQTIQGVGAKVALSVLGVLGPQEIANAVVLGNWAAVEEAPGVGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK KA SL S+ + A + + A AISAL NLGY QA A Sbjct: 120 ALRIVAELKDKAPSL-SLAGLPATPGGGPAAAVAPVGLPAAEAISALTNLGYNPAQANQA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V ++ AD + +I+ AL+ ++ Sbjct: 179 VALASRELGEAADTAALIKRALKELA 204 >gi|259908219|ref|YP_002648575.1| Holliday junction DNA helicase RuvA [Erwinia pyrifoliae Ep1/96] gi|224963841|emb|CAX55343.1| Holliday junction ATP-dependent DNA helicase [Erwinia pyrifoliae Ep1/96] gi|283478149|emb|CAY74065.1| Holliday junction ATP-dependent DNA helicase ruvA [Erwinia pyrifoliae DSM 12163] gi|310767866|gb|ADP12816.1| Holliday junction DNA helicase RuvA [Erwinia sp. Ejp617] Length = 204 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 99/205 (48%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+ GV Y + P+ L ++ +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPAVLIEASGVGYEVQMPMTCFYELPELQQEAVIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L V GVG ++A+ +LS ++A + V ++ + ++PG+ K Sbjct: 61 FGFNSKPERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVERGEIAALVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVV-QQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + + + D + + A++AL+ LGY +A+ Sbjct: 121 AERLVVEMKDRFKGMHGDLFASDAPFALTSEMTKETGNDAESEAVAALIALGYKPQEASR 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + +K K AD +IR ALRA Sbjct: 181 MI---VKTGKPDADCETLIREALRA 202 >gi|121998991|ref|YP_001003778.1| Holliday junction DNA helicase RuvA [Halorhodospira halophila SL1] gi|166230558|sp|A1WZ64|RUVA_HALHL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|121590396|gb|ABM62976.1| Holliday junction DNA helicase RuvA [Halorhodospira halophila SL1] Length = 204 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 52/204 (25%), Positives = 88/204 (43%), Gaps = 6/204 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + ++++ G+ Y + P+ T+ L + G L +R+D L Sbjct: 1 MIARLRGTLLEKRPPTLVVEANGLGYEVEAPLSTIEALPETGREVILHTHLSVREDGQTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L V GVG ++ + +LS + ELV + + K + Q+PGI K Sbjct: 61 FGFRTRAERDLFRRLIRVSGVGPKLGLALLSGVDGEELVRCVRDDDPKRLTQVPGIGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ + + + AI LV LGY +A Sbjct: 121 AERLIVELRDRLDGVGGGSTAAPAAGADH---PTGENDPVSEAIEGLVALGYKPPEAARM 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + + E IIR AL+ Sbjct: 178 ARNAAEPELGC---EAIIRRALQR 198 >gi|116748437|ref|YP_845124.1| Holliday junction DNA helicase RuvA [Syntrophobacter fumaroxidans MPOB] gi|166231451|sp|A0LGY7|RUVA_SYNFM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|116697501|gb|ABK16689.1| Holliday junction DNA helicase subunit RuvA [Syntrophobacter fumaroxidans MPOB] Length = 197 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 68/206 (33%), Positives = 108/206 (52%), Gaps = 9/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + DY++IDV GV YI+Y P+ T L GD L + TH+R+D I+L Sbjct: 1 MIGHLEGRLRHKAPDYIVIDVHGVGYIVYVPLSTFYDLPGPGDTVALNIHTHIREDAIQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F+ L +V GVG R+A+ +LS +T +L I+ Q + IPG+ KI Sbjct: 61 YGFRTVAEKDMFLRLITVNGVGPRLAVNILSGLTPDDLHRIILQQEGFRLKSIPGVGKKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL+ K + + + S +A SALVNLGY +A A Sbjct: 121 AERILLELRDKMSVKKGREAEQPA---------PAAESSYGDAYSALVNLGYRPAEAEKA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +K ++++ LR ++ Sbjct: 172 LGKAIKSLGADPPVEKLLKETLRLLA 197 >gi|304396235|ref|ZP_07378117.1| Holliday junction DNA helicase RuvA [Pantoea sp. aB] gi|304356604|gb|EFM20969.1| Holliday junction DNA helicase RuvA [Pantoea sp. aB] Length = 204 Score = 179 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++GNI VL++ GV Y IY P+ L ++ +F +R+D L Sbjct: 1 MIGRLRGNILEKQPPLVLLEAHGVGYEIYMPMTCFYELPELQHEAVIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L V GVG ++A+ +LS ++A + V ++ + + ++PG+ K Sbjct: 61 FGFNSKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVEKEEIASLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVV-QQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + + + D + + A++ALV+LGY +A+ Sbjct: 121 AERLVVEMKDRFKGMHGDLFGGDSAFTLTTPSAEPETNDAESEAVAALVSLGYKPQEASR 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + V + AD +IR ALRA Sbjct: 181 MISKVGR---PDADCETLIREALRA 202 >gi|301155728|emb|CBW15196.1| component of RuvABC resolvasome, regulatory subunit [Haemophilus parainfluenzae T3T1] Length = 203 Score = 179 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 67/204 (32%), Positives = 100/204 (49%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++KG + +L+DVQGV Y + P+ + L +IG TLF +R+D L Sbjct: 1 MIGRLKGILLEKQPPEILLDVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ + +I + + +IPG+ K Sbjct: 61 FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVDQFAYAIEREELSKLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + S + + S A AI+AL+ LGY A Sbjct: 121 AERLLVELKGKFKDVRQSDFFVESKHIPSTSELRQAESSADEAIAALIALGYKPTDAEKM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V V K + Q+IR AL+A Sbjct: 181 VKKVAKAD---LSSEQLIREALKA 201 >gi|330828297|ref|YP_004391249.1| Holliday junction ATP-dependent DNA helicase ruvA [Aeromonas veronii B565] gi|328803433|gb|AEB48632.1| Holliday junction ATP-dependent DNA helicase ruvA [Aeromonas veronii B565] Length = 229 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 4/205 (1%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 IG+++G + VL++V GV Y + P+ L +IG T+ +R+D L+ Sbjct: 27 IGRLRGIVIEKQPPEVLLEVGGVGYEVQMPMSCFYDLPEIGKEATIHTHFVVREDAQLLY 86 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF +R F L GVG ++A+ +LS +TAT+ V S+ + + ++PG+ K A Sbjct: 87 GFNHKQERALFRELIKTNGVGPKLALAILSGMTATQFVLSVEREEISSLVKLPGVGKKTA 146 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC-SMPSFAINAISALVNLGYGQDQATTA 180 R++ E+K + S + V + P A SALV LGY QA+ Sbjct: 147 ERLVVEMKDRLKGWVSHDLFSPAMVTLPASEPELRAPDVTEEAASALVALGYKPQQASQI 206 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + K+ IIR +LR++ Sbjct: 207 VSKIAKE---GMSVEDIIRESLRSL 228 >gi|152979457|ref|YP_001345086.1| Holliday junction DNA helicase motor protein [Actinobacillus succinogenes 130Z] gi|171704337|sp|A6VQA4|RUVA_ACTSZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|150841180|gb|ABR75151.1| Holliday junction DNA helicase RuvA [Actinobacillus succinogenes 130Z] Length = 204 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 98/205 (47%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L+DVQG+ Y + P+ + L G CT+F +R+D L Sbjct: 1 MIGRLQGKLIEKQPPEILLDVQGIGYELLLPMTSFYNLPDTGQECTVFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + DR F L GVG ++A+ +LS ++ E +I + + +IPG+ K Sbjct: 61 FGFSTKTDRTLFRELIKTNGVGPKLALAILSAMSVHEFAYAIEREELSKLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKGK L + + + A++ALV LGY +A Sbjct: 121 AERLLVELKGKFKGLRQPDFFVESKHITVPDIVSAEKETPNDEAVAALVALGYKPPEAAK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V V + Q+IR AL+A Sbjct: 181 MVKKVANGD---LTSEQLIREALKA 202 >gi|153875446|ref|ZP_02003246.1| Holliday junction ATP-dependent DNA helicase ruvA [Beggiatoa sp. PS] gi|152068090|gb|EDN66754.1| Holliday junction ATP-dependent DNA helicase ruvA [Beggiatoa sp. PS] Length = 203 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 54/204 (26%), Positives = 105/204 (51%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + +++DVQGV Y ++ P+ T L +I +L +R+D L Sbjct: 1 MISRLRGLLIEKQPPLLVVDVQGVGYEVFAPMSTFYNLPEINAEISLLTHLSIREDAHVL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL++ +R F L V G+G ++A+ +LS + + V+ + ++ + +IPG+ K+ Sbjct: 61 YGFLNESERGLFRDLIRVSGIGPKLALSILSSMELSMFVQCVNNNDTARLIRIPGVGKKM 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ + + ++ S + + +AISAL+ LGY AT Sbjct: 121 AERLVVEMRDRLKNWNTTNNTAPSPTTTSSTLTLGIATPIEDAISALIALGYKPQDATRW 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V +V ++ +IR AL++ Sbjct: 181 VQAVAEE---GLTSEVLIRRALQS 201 >gi|254504698|ref|ZP_05116849.1| Holliday junction DNA helicase RuvA [Labrenzia alexandrii DFL-11] gi|222440769|gb|EEE47448.1| Holliday junction DNA helicase RuvA [Labrenzia alexandrii DFL-11] Length = 205 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 84/206 (40%), Positives = 133/206 (64%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ ED+V++DV GV Y ++CP R L L + G+ LF+ET +R+D IRL Sbjct: 1 MIGKLKGTIDSYGEDHVILDVHGVGYQVHCPSRILQALPRAGEAAVLFIETIVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ +R+WF +L +VQGVGA+VA+G+L + A+E+ +I L + I++ PG+ ++ Sbjct: 61 YGFAAEAEREWFRILMTVQGVGAKVALGILGILKASEVANAIALGDKATISRAPGVGKRV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI++ELK KA L+S+ Q ++ ++ + P A+SAL NLGYGQ QA+ A Sbjct: 121 AERILSELKDKAPGLASIDQDTIAVSQTVADNVAARP--VAEAVSALTNLGYGQPQASAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V ++ A +IRL L+ ++ Sbjct: 179 VAKAMQSAGEDATTETLIRLGLKELA 204 >gi|322832435|ref|YP_004212462.1| Holliday junction DNA helicase RuvA [Rahnella sp. Y9602] gi|321167636|gb|ADW73335.1| Holliday junction DNA helicase RuvA [Rahnella sp. Y9602] Length = 204 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 104/205 (50%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L ++G +F + +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLLETNGVGYEVHMPMTCFYELPELGQEAIIFTQFIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V ++ + + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAVEKEEITALIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN-KEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + L+ + + + + A A++AL++LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNHTDITLPASASKAKESDAEGEAVAALISLGYKPPEASR 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + V K A+ +IR ALRA Sbjct: 181 MISKVAK---PGAESETLIREALRA 202 >gi|325579043|ref|ZP_08148999.1| crossover junction ATP-dependent DNA helicase RuvA [Haemophilus parainfluenzae ATCC 33392] gi|325159278|gb|EGC71412.1| crossover junction ATP-dependent DNA helicase RuvA [Haemophilus parainfluenzae ATCC 33392] Length = 203 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 65/203 (32%), Positives = 98/203 (48%), Gaps = 3/203 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L+DVQGV Y + P+ + L +IG TLF +R+D L Sbjct: 1 MIGRLTGILLEKQPPEILLDVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ + +I + + +IPG+ K Sbjct: 61 FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + S + + S A A++ALV LGY A Sbjct: 121 AERLLVELKGKFKDVRQSDFFVESKHIPSTSELRQAESSADEAVAALVALGYKPTDAEKM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V V K + Q+IR AL+ Sbjct: 181 VKKVAKAD---LTSEQLIREALK 200 >gi|261493369|ref|ZP_05989895.1| crossover junction endonuclease RuvA [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496635|ref|ZP_05993015.1| crossover junction endonuclease RuvA [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307838|gb|EEY09161.1| crossover junction endonuclease RuvA [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311013|gb|EEY12190.1| crossover junction endonuclease RuvA [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 201 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 67/203 (33%), Positives = 103/203 (50%), Gaps = 5/203 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G I +L+DVQGV Y + P+ + L +IG+ T+F +R+D L Sbjct: 1 MIGRLHGKIIEKQPPEILLDVQGVGYELLLPMTSFYSLPQIGEEATIFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ ++ +I + + +IPGI K Sbjct: 61 FGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFATAIENEELAKLTKIPGIGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK ++ V+ EQ + P A A+ AL+ LGY A Sbjct: 121 AERLLVELKGKFKRMAQ--SDFFVEVSHEQIVASNTPDPANEALDALIALGYKPADAEKM 178 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 + V K+ A Q+IR AL+ Sbjct: 179 IKKV---NKSGATSEQLIREALK 198 >gi|308125357|ref|ZP_05774780.2| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus K5030] gi|308113231|gb|EFO50771.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus K5030] Length = 223 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 101/205 (49%), Gaps = 4/205 (1%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 IG+++G + VLI+V G+ Y + P+ L IG+ ++ +R+D L+ Sbjct: 21 IGRLRGILLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLLY 80 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF + +R F + GVG ++ +G+LS +TA++ V + ++ + ++PG+ K A Sbjct: 81 GFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDVSTLVKLPGVGKKTA 140 Query: 122 SRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 R++ E+K + + + + + S S A+SAL+ LGY QA+ Sbjct: 141 ERLVVEMKDRLKGWGAGDLFTPFTDAAPTDSAAASSNSAEEEAVSALLALGYKPTQASKV 200 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + K Q+IR AL+++ Sbjct: 201 VSQIAK---PDMSSEQLIREALKSM 222 >gi|119944489|ref|YP_942169.1| Holliday junction DNA helicase RuvA [Psychromonas ingrahamii 37] gi|166230588|sp|A1SSV5|RUVA_PSYIN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|119863093|gb|ABM02570.1| Holliday junction DNA helicase subunit RuvA [Psychromonas ingrahamii 37] Length = 207 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 56/209 (26%), Positives = 99/209 (47%), Gaps = 7/209 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLI+V G+ Y + P+ + L G ++ +R+D L Sbjct: 1 MIGRLRGVLLEKQPPEVLIEVSGIGYEVQLPMSSFYALPDAGQEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V+ I + ++PG+ K Sbjct: 61 YGFADKHERAMFRELIKVNGVGPKLALAILSGMSANQFVQCIHNDAVTTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSV----VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ E+K + + + D E + + + AISALV+LGY Sbjct: 121 AERLVVEMKDRLKNWTGADLLTPASDKMVFENEFTNSAASGNAKDEAISALVSLGYKPVL 180 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A A+ V D +IR +L+++ Sbjct: 181 AEKAIQQVY---VEGMDCEALIRSSLKSM 206 >gi|254360614|ref|ZP_04976763.1| crossover junction endonuclease RuvA [Mannheimia haemolytica PHL213] gi|153091154|gb|EDN73159.1| crossover junction endonuclease RuvA [Mannheimia haemolytica PHL213] Length = 201 Score = 178 bits (451), Expect = 4e-43, Method: Composition-based stats. Identities = 67/203 (33%), Positives = 103/203 (50%), Gaps = 5/203 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G I +L+DVQGV Y + P+ + L +IG+ T+F +R+D L Sbjct: 1 MIGRLHGKIIEKQPPEILLDVQGVGYELLLPMTSFYSLPQIGEEATIFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ ++ +I + + +IPGI K Sbjct: 61 FGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFATAIENEELAKLTKIPGIGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK ++ V+ EQ + P A A+ AL+ LGY A Sbjct: 121 AERLLVELKGKFKGMAQ--SDFFVEVSHEQIVASNTPDPANEALDALIALGYKPADAEKM 178 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 + V K+ A Q+IR AL+ Sbjct: 179 IKKV---NKSGATSEQLIREALK 198 >gi|88811437|ref|ZP_01126692.1| Holliday junction DNA helicase motor protein [Nitrococcus mobilis Nb-231] gi|88791326|gb|EAR22438.1| Holliday junction DNA helicase motor protein [Nitrococcus mobilis Nb-231] Length = 203 Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 101/204 (49%), Gaps = 6/204 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LIDVQGV Y + P+ T L G+ TL +++D L Sbjct: 1 MIGRLRGILLEKQPPRLLIDVQGVGYEVEAPMSTFYELPAQGEAITLRTHLAIKEDGHTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ +R F L V GVG ++A+ LS + E + + +++ + ++PG+ K Sbjct: 61 YGFHTEQERALFRSLIRVSGVGPKMALAFLSGMRTEEFLWCVRQRDTAALIRLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ + +L+ Q + + A+SAL+ LGY +A Sbjct: 121 AERLIVEMQDRLSALA---TQASTAAGASFSAAGGANEAFTEAMSALLALGYKTPEAQQL 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + + + E ++IRLALR Sbjct: 178 LAGLAEAE---LSSEELIRLALRK 198 >gi|161936318|ref|YP_129329.2| Holliday junction DNA helicase RuvA [Photobacterium profundum SS9] gi|90135510|sp|Q6LT49|RUVA_PHOPR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA Length = 206 Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats. Identities = 58/208 (27%), Positives = 98/208 (47%), Gaps = 6/208 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G I VLIDV G+ Y + P+ L ++G + +R+D L Sbjct: 1 MIGRLSGTILEKQPPEVLIDVGGIGYEVQMPMSCFYELPEVGQAAVICTHFIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F + GVG ++ + +LS +TA++ V S+ ++ + +IPG+ K Sbjct: 61 YGFNKKSERELFREVIKANGVGPKLGLAILSAMTASQFVLSVENEDITTLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSS---VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ E++ + + + + S A+SAL+ LGY QA Sbjct: 121 AERLVIEMRDRLKGWGEGDLFTPASDAAASNAEIQKYSSARAEDEAVSALIALGYKALQA 180 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 V V+K E IIR ALR++ Sbjct: 181 AKVVSQVVKPE---MSSENIIREALRSM 205 >gi|307545151|ref|YP_003897630.1| Holliday junction DNA helicase motor protein [Halomonas elongata DSM 2581] gi|307217175|emb|CBV42445.1| Holliday junction DNA helicase motor protein [Halomonas elongata DSM 2581] Length = 203 Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats. Identities = 52/207 (25%), Positives = 98/207 (47%), Gaps = 6/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV GV Y + + TL L G+ +L+ +R D L Sbjct: 1 MIGRLRGTLLEKQPPWLVVDVAGVGYELEASMTTLVALPGCGEDVSLYTHLSVRDDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+G ++A+ +LS + + ++ + K + ++PG+ K Sbjct: 61 YGFAREQERSLFRALIKVNGIGPKLALAILSGMDEDAFIRCVMDDDIKALTRLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ + Q A S +A +ALV+LGY +AT Sbjct: 121 AERLVIEMRDRFPHWQDSTQVSAGDAG-MGATTPSPKDPLADAEAALVSLGYKPSEATRM 179 Query: 181 VVSVLKKEKNIADDSQIIRLAL-RAIS 206 L ++ +I+ AL R ++ Sbjct: 180 ----LSGLEDEGSTEAMIKAALARRMA 202 >gi|238919502|ref|YP_002933017.1| Holliday junction DNA helicase RuvA [Edwardsiella ictaluri 93-146] gi|238869071|gb|ACR68782.1| holliday junction DNA helicase RuvA, putative [Edwardsiella ictaluri 93-146] Length = 204 Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats. Identities = 56/203 (27%), Positives = 99/203 (48%), Gaps = 4/203 (1%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 IG+++G I V+++ GV Y + P+ L ++G +F +R+D L+ Sbjct: 4 IGRLRGTILEKQPPQVVLEAHGVGYEVQMPMTCFYELPQVGSEAVIFTHFVVREDAQLLY 63 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF + +R F L V GVG ++A+ +LS ++A + V ++ + + ++PG+ K A Sbjct: 64 GFNNKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVEREEVAALVKLPGVGKKTA 123 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 R++ E+K + LS + + A + A++AL+ LGY +A+ V Sbjct: 124 ERLVVEMKDRFKGLSGDLFTP-ADAQLPSAQPQAQADAEGEAVAALIALGYKPQEASRLV 182 Query: 182 VSVLKKEKNIADDSQIIRLALRA 204 V AD +IR ALRA Sbjct: 183 NRVAVA---GADSETLIRDALRA 202 >gi|157962184|ref|YP_001502218.1| Holliday junction DNA helicase RuvA [Shewanella pealeana ATCC 700345] gi|189045771|sp|A8H546|RUVA_SHEPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|157847184|gb|ABV87683.1| Holliday junction DNA helicase RuvA [Shewanella pealeana ATCC 700345] Length = 205 Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 108/207 (52%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + VL+DV GV Y + P+ + L ++G ++ +R+D L Sbjct: 1 MIGRIRGILIEKQAPEVLVDVSGVGYELQMPLTSFYELPELGQEAVIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+S +R F LL GVG ++ + +LS +TA E V + + + ++PG+ K Sbjct: 61 YGFVSKQERSLFRLLIKANGVGPKLGLTILSGMTAGEFVACVERDDIATLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E++ K SL +SV + + + + +AI+AL++LGY QA+ Sbjct: 121 AERLLVEMRDKLKSLMEASVGSEREFMLQSNYKASEVVNTAEEDAIAALLSLGYKPAQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 AV SV + +I+ AL+++ Sbjct: 181 KAVSSVYT---DGMSSETLIKSALKSM 204 >gi|188533631|ref|YP_001907428.1| Holliday junction DNA helicase RuvA [Erwinia tasmaniensis Et1/99] gi|229560030|sp|B2VJ94|RUVA_ERWT9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|188028673|emb|CAO96535.1| Holliday junction ATP-dependent DNA helicase [Erwinia tasmaniensis Et1/99] Length = 204 Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+ GV Y + P+ L I +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPVVLIEASGVGYEVQMPMTCFYELPDIQHEAIIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L V GVG ++A+ +LS ++A + V ++ + + ++PG+ K Sbjct: 61 FGFNSKPERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVEREEIAALVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVV-QQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + + + D + + A++AL LGY +A+ Sbjct: 121 AERLVVEMKDRFKGMHGDLFASDAPFALTSEMPKETANDAEGEAVAALTALGYKPQEASR 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 +V V K AD +IR ALRA Sbjct: 181 MIVKV---GKPDADCETLIREALRA 202 >gi|329893679|ref|ZP_08269813.1| Holliday junction DNA helicase RuvA [gamma proteobacterium IMCC3088] gi|328923606|gb|EGG30918.1| Holliday junction DNA helicase RuvA [gamma proteobacterium IMCC3088] Length = 205 Score = 177 bits (450), Expect = 6e-43, Method: Composition-based stats. Identities = 61/204 (29%), Positives = 96/204 (47%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG I+G + ++++ GV Y I P+ TL L +GD + +R+D L Sbjct: 1 MIGSIRGRLIVKQPPDIVVEAAGVGYEIQVPMTTLFQLPALGDDVLILTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ D DRQ F L V GVG ++A+ +LS + A + + + +PG+ K Sbjct: 61 YGFVDDTDRQLFRQLIKVNGVGPKLALAILSGMDAVAFARCVGRNDVSALVALPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ + S + + A +A SALV LGY +A+ Sbjct: 121 AERLIVEMRDRLGDWLSQLSPQGENAGGIVGATIAHDPIA-DAESALVALGYKPQEASRL 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V SV D +IRLALR+ Sbjct: 180 VQSVAGD--QDLDSETLIRLALRS 201 >gi|126668399|ref|ZP_01739356.1| Holliday junction DNA helicase motor protein [Marinobacter sp. ELB17] gi|126627108|gb|EAZ97748.1| Holliday junction DNA helicase motor protein [Marinobacter sp. ELB17] Length = 209 Score = 177 bits (450), Expect = 6e-43, Method: Composition-based stats. Identities = 58/208 (27%), Positives = 105/208 (50%), Gaps = 6/208 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + +++ QG+ Y + P+ T L G TL +R+D L Sbjct: 1 MIGRIRGILLEKKPAQAMVECQGLGYEVDIPLSTFLNLPDPGQELTLHTHFVVREDAQSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S LDR F LL V GVG ++A+G+LS ++A++ + S+ +++ + ++PG+ K Sbjct: 61 FGFSSRLDRDLFRLLIKVNGVGPKLAVGILSGLSASQFIRSVQARDTSALVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNK---EQAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ E+ + L + + + + A +AL+ LGY +A Sbjct: 121 AERLLIEMTDRIGQLEGQFELTAASAPGATLPANGMPAANDPREEAEAALIALGYKPQEA 180 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ + + + + Q+IR+ALR + Sbjct: 181 AKAISRIAE---DGMTNEQLIRMALRNM 205 >gi|34499678|ref|NP_903893.1| Holliday junction DNA helicase RuvA [Chromobacterium violaceum ATCC 12472] gi|44888390|sp|Q7NQB7|RUVA_CHRVO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|34105529|gb|AAQ61883.1| holliday junction DNA helicase [Chromobacterium violaceum ATCC 12472] Length = 197 Score = 177 bits (450), Expect = 6e-43, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 105/205 (51%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + V++DV GV Y + P+ T L +G CTLF +R+D L Sbjct: 1 MIGRLSGKLIEKLPPQVVVDVNGVGYEVDVPMTTFYQLPALGQPCTLFTHLAVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +RQ F L V G+GA++A+ +LS +TA EL ++ ++ K ++ +PGI K Sbjct: 61 YGFASKEERQTFRQLIKVTGIGAKIALAILSGMTADELAIAVASEDIKRLSAVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK + + P + ++AL+ LGY + +A A Sbjct: 121 AERLVLELRGKL-------ATGGNLTVPGGLPFAATPDEKSDIVNALLALGYNEKEAAAA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 K S+ +RLAL+++ Sbjct: 174 ----TKSLPADVTVSEGVRLALKSL 194 >gi|118588334|ref|ZP_01545743.1| Holliday junction DNA helicase motor protein [Stappia aggregata IAM 12614] gi|118439040|gb|EAV45672.1| Holliday junction DNA helicase motor protein [Stappia aggregata IAM 12614] Length = 205 Score = 177 bits (450), Expect = 6e-43, Method: Composition-based stats. Identities = 85/206 (41%), Positives = 132/206 (64%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ ED+V++DV GV Y ++CP R L L + G+ LF+ET +R+D IRL Sbjct: 1 MIGKLKGTIDSYGEDHVILDVHGVGYQVHCPSRILQGLPRPGEAAVLFIETIVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+WF +L +VQGVGA+VA+G+L + A+E+ +I L + VI++ PG+ ++ Sbjct: 61 YGFGIEAEREWFRILMTVQGVGAKVALGILGILKASEVANAIALGDKAVISRAPGVGKRV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI++ELK KA L++V Q ++ ++ + P A+SAL NLGY Q QA+ A Sbjct: 121 AERIISELKDKAPGLATVDQGTIAVSQTIADNVAARP--VAEAVSALTNLGYAQAQASGA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V L+ A +IRL L+ ++ Sbjct: 179 VAKALQSAGEDATTETLIRLGLKELA 204 >gi|262276112|ref|ZP_06053921.1| holliday junction DNA helicase RuvA [Grimontia hollisae CIP 101886] gi|262219920|gb|EEY71236.1| holliday junction DNA helicase RuvA [Grimontia hollisae CIP 101886] Length = 209 Score = 177 bits (449), Expect = 7e-43, Method: Composition-based stats. Identities = 55/211 (26%), Positives = 103/211 (48%), Gaps = 9/211 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L++V GV Y + P+ L ++G+ ++ +R+D L Sbjct: 1 MIGRLRGILLEKQPPEILLEVNGVGYEVSMPMSCFYELPEVGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++R F + GVG ++ + +LS +TAT+ V+S+ ++ + +IPG+ K Sbjct: 61 YGFNTTVERALFREVIKANGVGPKLGLAILSGMTATQFVDSVEREDVSTLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLS------SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 A R++ E++ + + + N + + + AISAL+ LGY Sbjct: 121 AERLVIEMRDRLKNWHAFDLFTPHADAAVRRANGTETVVAASTDPKDEAISALIALGYKA 180 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 QA V V + IIR ALR++ Sbjct: 181 AQAEKVVKQVA---VDGMKSEAIIRDALRSM 208 >gi|183599000|ref|ZP_02960493.1| hypothetical protein PROSTU_02444 [Providencia stuartii ATCC 25827] gi|188021215|gb|EDU59255.1| hypothetical protein PROSTU_02444 [Providencia stuartii ATCC 25827] Length = 205 Score = 177 bits (449), Expect = 8e-43, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 103/206 (50%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VL+++QGV Y ++ P+ L +IG +F +R+D L Sbjct: 1 MIGRLRGIVLEKQPPIVLLELQGVGYEVHMPMTCFYELPEIGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V +I + + ++PGI K Sbjct: 61 YGFNDKQERALFKELIKVNGVGPKLALAILSGMSAQQFVSAIEQEAISSLVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCV--NKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + L+ + S + + S A +ALV LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNQHSDIKLPDVNVKVSSRADIEAEAATALVALGYKPQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 V V K +D +IR ALRA Sbjct: 181 RMVSKVAK---PDSDCESLIRDALRA 203 >gi|120598878|ref|YP_963452.1| Holliday junction DNA helicase RuvA [Shewanella sp. W3-18-1] gi|146293036|ref|YP_001183460.1| Holliday junction DNA helicase RuvA [Shewanella putrefaciens CN-32] gi|166200263|sp|A4Y6S8|RUVA_SHEPC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166200265|sp|A1RJQ3|RUVA_SHESW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|120558971|gb|ABM24898.1| Holliday junction DNA helicase RuvA [Shewanella sp. W3-18-1] gi|145564726|gb|ABP75661.1| Holliday junction DNA helicase RuvA [Shewanella putrefaciens CN-32] gi|319426434|gb|ADV54508.1| Holliday junction DNA helicase RuvA [Shewanella putrefaciens 200] Length = 205 Score = 177 bits (449), Expect = 8e-43, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 108/207 (52%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L+DV GV Y + P+ + L +I ++ +R+D L Sbjct: 1 MIGRLRGVLVEKQAPEILMDVNGVGYELQMPLTSFYELPEIDHETVVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ +R F LL GVG ++A+ +LS +TA+E V + + + ++PG+ K Sbjct: 61 YGFITKQERALFRLLIKTNGVGPKLALTILSGMTASEFVGCVERDDIVTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQD--MSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E++ K SL + + ++ S +AISAL++LGY QA+ Sbjct: 121 AERLLVEMRDKLKSLMEASAGSEREFVLQSNYSPTPTVNSAEEDAISALISLGYKPPQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 +V + K+ D +I+ AL+++ Sbjct: 181 KSVSAAYKE---GMDSETLIKAALKSM 204 >gi|254490165|ref|ZP_05103356.1| Holliday junction DNA helicase RuvA [Methylophaga thiooxidans DMS010] gi|224464651|gb|EEF80909.1| Holliday junction DNA helicase RuvA [Methylophaga thiooxydans DMS010] Length = 198 Score = 177 bits (449), Expect = 8e-43, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 99/204 (48%), Gaps = 7/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I +++DV GV Y + P+ T L + D TLF +R+D L Sbjct: 1 MIGRLRGIILEKQPPELVLDVHGVGYELSAPMSTFFNLPALNDEVTLFTHMVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 + F ++ +R F L V GVGA++A+ +LS S+ ++ + ++PG+ K Sbjct: 61 YAFATERERLLFRSLLKVNGVGAKLALTILSGSDVDTFARSVQEGDTASLTRLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ + +SS + D + H+ A+ ALV LGY +A Sbjct: 121 AERLIVEMRDRLKEVSSAMGLDAIVTD----HVKPAAGAKSEAVEALVALGYKAAEADKM 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + S + + Q+IR AL+ Sbjct: 177 LRSF---DTEGMNTEQLIRQALQR 197 >gi|253989949|ref|YP_003041305.1| Holliday junction DNA helicase RuvA [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211639070|emb|CAR67683.1| holliday junction atp-dependent dna helicase ruva (ec 3.6.1.-) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781399|emb|CAQ84562.1| holliday junction ATP-dependent DNA helicase RuvA [Photorhabdus asymbiotica] Length = 205 Score = 177 bits (449), Expect = 8e-43, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 102/206 (49%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VL++ GV Y ++ P+ L IG LF +R+D L Sbjct: 1 MIGRLRGIVLEKQPPLVLLETNGVGYEVHMPMTCFYELPDIGQETVLFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V +I + + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAIEQEAIASLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN--KEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + L+ + S +N S A +ALV+LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNQNSDINLPATAKQTTSDADIEAEAAAALVSLGYKPQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 V V+K AD +IR ALRA Sbjct: 181 RMVSKVVK---PGADCETLIREALRA 203 >gi|92118982|ref|YP_578711.1| Holliday junction DNA helicase RuvA [Nitrobacter hamburgensis X14] gi|91801876|gb|ABE64251.1| Holliday junction DNA helicase subunit RuvA [Nitrobacter hamburgensis X14] Length = 206 Score = 177 bits (449), Expect = 8e-43, Method: Composition-based stats. Identities = 90/206 (43%), Positives = 132/206 (64%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ EDYV++DV GV Y ++C RTL L G L +ET++R+DQI+L Sbjct: 2 MIGKLKGIIDSYGEDYVILDVGGVGYQVHCASRTLQALPSPGAAAVLSIETYVREDQIKL 61 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +D +R+WF LLQ+VQGVGARVA+ VL ++ +L +I L++ +A+ PG+ K+ Sbjct: 62 YGFRTDHEREWFRLLQTVQGVGARVALAVLGTLSPADLANAIALRDKASVARTPGVGPKV 121 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA + ++V + P +AISALVNLGYGQ QAT A Sbjct: 122 AERIVTELKDKAPAFANVDPAVVHLAG--AIDDARAPRPVRDAISALVNLGYGQPQATAA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + A+ +Q+IRL L+ ++ Sbjct: 180 IAVASRSAGDDAETAQLIRLGLKELA 205 >gi|108807436|ref|YP_651352.1| Holliday junction DNA helicase RuvA [Yersinia pestis Antiqua] gi|108811697|ref|YP_647464.1| Holliday junction DNA helicase RuvA [Yersinia pestis Nepal516] gi|145598360|ref|YP_001162436.1| Holliday junction DNA helicase RuvA [Yersinia pestis Pestoides F] gi|21959100|gb|AAM85813.1|AE013828_4 Holliday junction helicase subunit B [Yersinia pestis KIM 10] gi|45436564|gb|AAS62118.1| Holliday junction helicase subunit B [Yersinia pestis biovar Microtus str. 91001] gi|51589648|emb|CAH21278.1| Holliday junction DNA helicase [Yersinia pseudotuberculosis IP 32953] gi|108775345|gb|ABG17864.1| Holliday junction DNA helicase subunit RuvA [Yersinia pestis Nepal516] gi|108779349|gb|ABG13407.1| Holliday junction DNA helicase subunit RuvA [Yersinia pestis Antiqua] gi|145210056|gb|ABP39463.1| Holliday junction DNA helicase subunit RuvA [Yersinia pestis Pestoides F] Length = 226 Score = 177 bits (449), Expect = 9e-43, Method: Composition-based stats. Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 4/204 (1%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 IG+++G I VL++ GV Y + P+ L ++G +F + +R+D L+ Sbjct: 24 IGRLRGIILEKQPPLVLLETNGVGYEVQLPMTCFYELPELGQEAIIFTQFVVREDAQLLY 83 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF + +R F L V GVG ++A+ +LS ++A + V ++ ++ + ++PG+ K A Sbjct: 84 GFNNKQERALFRELIKVNGVGPKLALAILSGMSAQQFVGAVEREDITTLVKLPGVGKKTA 143 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVN-KEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 R++ E+K + L+ + + ++ + S A SALV LGY +A+ Sbjct: 144 ERLVVEMKDRFKGLNGDLFNNTGDISLPTASPQTSDADIEAEAASALVALGYKPQEASRL 203 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + K AD +IR ALRA Sbjct: 204 VSKIAK---PGADCETLIRDALRA 224 >gi|315122880|ref|YP_004063369.1| Holliday junction DNA helicase RuvA [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496282|gb|ADR52881.1| Holliday junction DNA helicase RuvA [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 208 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 166/208 (79%), Positives = 193/208 (92%), Gaps = 1/208 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGKIKGNIEGLYEDYVLIDVQG+CYI+YCPIRTLSCLGKIGDFCTLFVETH+RQDQIRL Sbjct: 1 MIGKIKGNIEGLYEDYVLIDVQGICYIVYCPIRTLSCLGKIGDFCTLFVETHVRQDQIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLSDL+R+WF+LLQSVQGVGARVAMGVLSRIT ELV+SIILQN+K++AQIPGI K+ Sbjct: 61 FGFLSDLERKWFVLLQSVQGVGARVAMGVLSRITPVELVDSIILQNNKILAQIPGIGAKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI-CSMPSFAINAISALVNLGYGQDQATT 179 ++RIM ELKGKA+SLSS ++++SC+N E++++ SM S AI+AISALVNLGYGQDQAT Sbjct: 121 SNRIMIELKGKAVSLSSSEKKEISCLNGEKSNVCESMSSSAIDAISALVNLGYGQDQATV 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAISC 207 AVVS+LKKEKNI DDSQIIRLALR ++C Sbjct: 181 AVVSILKKEKNITDDSQIIRLALREMTC 208 >gi|254449000|ref|ZP_05062454.1| Holliday junction DNA helicase RuvA [gamma proteobacterium HTCC5015] gi|198261394|gb|EDY85685.1| Holliday junction DNA helicase RuvA [gamma proteobacterium HTCC5015] Length = 205 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 105/204 (51%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + ++L+DV GV Y + P+ T+ L G + + TH+R+D I+L Sbjct: 1 MIGRLSGTLISKQAPHLLVDVNGVGYEVEAPLSTVFELPAEGQAVVVLIHTHVREDAIQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 F F +D++R++F L + GVGA++A+ ++S +A + + +++ + ++PG+ K Sbjct: 61 FAFGTDIERRFFRSLIKINGVGAKMALAIMSGASAETFAQWVDQEDTAALTKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ + + A + S A++AL LGY +A Sbjct: 121 AERLVIEMRDRLDKEVFMGAVPSLPKAGVSATASAPMSREDEAVAALEGLGYRAAEARKM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V V + + ++IRLAL+ Sbjct: 181 VAKVAQ---DDLPTEEMIRLALQQ 201 >gi|114321641|ref|YP_743324.1| Holliday junction DNA helicase RuvA [Alkalilimnicola ehrlichii MLHE-1] gi|122310889|sp|Q0A5Q3|RUVA_ALHEH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|114228035|gb|ABI57834.1| Holliday junction DNA helicase subunit RuvA [Alkalilimnicola ehrlichii MLHE-1] Length = 208 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 97/207 (46%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + + +L+DV GV Y + P+ T L TL+ +R D L Sbjct: 1 MIGRLHGTVAERHPPALLLDVGGVGYELEAPMSTFYALPAGDQAVTLWTHLAVRDDGQAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F +L + GVG ++A+ +LS + A L I ++ + ++PG+ K Sbjct: 61 YGFASRAERDLFRVLIRISGVGPKLALALLSGMNAEGLQRCIEREDVATLTRLPGVGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSC---VNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ EL+ + L + ++ +A+SALV LGY +A Sbjct: 121 AQRLIVELRDRLDGLLPAASGGVPARTGSGEQLDAPAGPQGSREDAVSALVALGYKPAEA 180 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRA 204 V +V N ++IR AL+A Sbjct: 181 GRLVNAV--PGANDLPSEELIRRALQA 205 >gi|149375111|ref|ZP_01892883.1| Holliday junction DNA helicase motor protein [Marinobacter algicola DG893] gi|149360475|gb|EDM48927.1| Holliday junction DNA helicase motor protein [Marinobacter algicola DG893] Length = 210 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 58/209 (27%), Positives = 100/209 (47%), Gaps = 7/209 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + L++ G+ Y + P T L + G L +R+D L Sbjct: 1 MIGRIRGILIEKSPAQALVECAGLGYEVDIPYTTFFNLPETGAELVLHTHFVVREDAQSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S LDR F LL V GVG ++A G+LS + A + + + +++ + ++PG+ K Sbjct: 61 YGFSSRLDRDLFRLLIKVNGVGPKLAAGILSGLDANQFIRCVEARDANALVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSS----VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ E+ + L + A + + A +AL+ LGY + Sbjct: 121 AERLLIEMTDRIGQLEGQFIPASPNATVTSDSANAGVVAGHDPREEAEAALIALGYKPQE 180 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ A+ V ++ ++IRLALRA+ Sbjct: 181 ASKAISKVAEE---SMSSQELIRLALRAM 206 >gi|228473784|ref|ZP_04058529.1| holliday junction DNA helicase RuvA [Capnocytophaga gingivalis ATCC 33624] gi|228274805|gb|EEK13628.1| holliday junction DNA helicase RuvA [Capnocytophaga gingivalis ATCC 33624] Length = 196 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 96/205 (46%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + Y++ID GV Y + + T S L ++ +++D L Sbjct: 1 MITHLQGRLVEKTPTYLVIDCNGVGYWVNISLHTFSQLSDT-QQLKIYTYLQIKEDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R+ F LL SV GVGA A +LS ++ +L +I+ + + I + GI K Sbjct: 60 FGFFDKFEREIFSLLISVSGVGANTARVMLSSLSPAQLQSAIVNSDVRTIQSVKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + L+ ++ PS A++AL LGY + A Sbjct: 120 AQRIILDLKEKMVKLTGDNASLVAA--------SQSPSNKEEALAALEVLGYPRKAAEAV 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +L + Q+I+ AL+ + Sbjct: 172 VNKILTQSGQEFSVEQLIKQALKQL 196 >gi|46143844|ref|ZP_00133975.2| COG0632: Holliday junction resolvasome, DNA-binding subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207771|ref|YP_001052996.1| Holliday junction DNA helicase RuvA [Actinobacillus pleuropneumoniae L20] gi|303252521|ref|ZP_07338684.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247270|ref|ZP_07529319.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307249498|ref|ZP_07531486.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307256311|ref|ZP_07538094.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307260744|ref|ZP_07542433.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|166229626|sp|A3MZ05|RUVA_ACTP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|126096563|gb|ABN73391.1| holliday junction ATP-dependent DNA helicase RuvA [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|302648489|gb|EFL78682.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306856243|gb|EFM88397.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306858491|gb|EFM90559.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306865137|gb|EFM97037.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306869583|gb|EFN01371.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 201 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 66/204 (32%), Positives = 100/204 (49%), Gaps = 5/204 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G I ++IDVQGV Y + P+ + L ++G+ T+F +R+D L Sbjct: 1 MIGRLHGKIIEKQPPEMVIDVQGVGYEVLLPMTSFYSLPQVGEEATIFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ ++ ++ + + +IPGI K Sbjct: 61 FGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFANAVENEELAKLTKIPGIGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK ++ + V A P A A ALV LGY A Sbjct: 121 AERLLVELKGKFKGVAQSDFFEEHSVETIVATHSHDP--ADEARDALVALGYKLADAEKM 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + V K A Q+IR AL+A Sbjct: 179 IKKV---NKAGATSEQLIREALKA 199 >gi|300723091|ref|YP_003712389.1| Holliday junction helicase subunit A [Xenorhabdus nematophila ATCC 19061] gi|297629606|emb|CBJ90209.1| Holliday junction helicase, subunit A [Xenorhabdus nematophila ATCC 19061] Length = 205 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 105/206 (50%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VL++ GV Y ++ P+ L +IG LF + +R+D L Sbjct: 1 MIGRLRGTVLEKQPPLVLLETNGVGYEVHMPMTCFYELPEIGQQAILFTQFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V +I + + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAIEQEAIASLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA--HICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + L+ + S +N A S A +ALV+LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNQSSDINLPAAAKQTNSDADIEAEAAAALVSLGYKPQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 V V+K AD +IR ALRA Sbjct: 181 RMVSKVVK---PGADCETLIREALRA 203 >gi|288939916|ref|YP_003442156.1| Holliday junction DNA helicase RuvA [Allochromatium vinosum DSM 180] gi|288895288|gb|ADC61124.1| Holliday junction DNA helicase RuvA [Allochromatium vinosum DSM 180] Length = 211 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 60/210 (28%), Positives = 102/210 (48%), Gaps = 9/210 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I + +L+DV GV Y + P+ T L +G+ TL +R+D L Sbjct: 1 MIGRLQGRILAKHPPQLLLDVNGVGYELEAPMSTFYGLPAVGETATLLTHLAVREDAWTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ + DR F L V GVGAR+A+ +LS + A + + +++ + ++PGI K Sbjct: 61 YGFIRERDRALFRALIKVTGVGARMALAILSGMDAARFAQCVEQEDATALTRLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDM------SCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 A R++ E++ + + + A + + +A+SALV LGY Sbjct: 121 AERLIIEMRDRLGGVMIAPGAALPSAAGQPASGTTTADVVAEDQALADAVSALVALGYKP 180 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRA 204 A +V + +IIR ALR+ Sbjct: 181 PDANRMARAV---DDGAKTAEEIIRAALRS 207 >gi|260912903|ref|ZP_05919388.1| crossover junction endoribonuclease subunit A [Pasteurella dagmatis ATCC 43325] gi|260632893|gb|EEX51059.1| crossover junction endoribonuclease subunit A [Pasteurella dagmatis ATCC 43325] Length = 204 Score = 176 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 101/205 (49%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + +L+DVQGV Y + P+ + L +IG +LF +R+D L Sbjct: 1 MIGHLTGRLVEKQPPEILLDVQGVGYELLLPMTSFYNLPEIGQKTSLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ E V +I + + +IPG+ K Sbjct: 61 FGFSQKTDRTLFRELIKTNGVGPKLALAILSAMSVNEFVYAIEREELSKLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKGK ++ + + + + S + A+SALV LGY +A Sbjct: 121 AERLLVELKGKFKDVTQGDFFIESKHLPDVKVSMQSSDAPNDEAVSALVALGYKPVEAEK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V + K Q+IR AL+A Sbjct: 181 MVKRITK---PDLSSEQLIREALKA 202 >gi|298370450|ref|ZP_06981766.1| holliday junction DNA helicase RuvA [Neisseria sp. oral taxon 014 str. F0314] gi|298281910|gb|EFI23399.1| holliday junction DNA helicase RuvA [Neisseria sp. oral taxon 014 str. F0314] Length = 193 Score = 176 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 106/205 (51%), Gaps = 14/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++KG + +IDV GV Y + ++T L G+ L+ + +R+D L Sbjct: 1 MIGRLKGILVEKNPPQAVIDVNGVGYEVDVSMQTFYRLPATGEAVQLYTQLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L V G+GA+ A+G+LS ++A EL +++ ++ K ++ PGI K Sbjct: 61 FGFATADERATFRQLVKVSGIGAKTALGILSAMSADELAQAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK +S V+ A + + + +S L+ LGY + +A A Sbjct: 121 AERMVLELRGKL----------VSAVSDGPAALSAAADGTDDIVSTLLALGYSEREAKAA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V K D + +RLAL+ + Sbjct: 171 V----KGLPKGTDVGEGVRLALKNL 191 >gi|46912737|emb|CAG19527.1| Putative holliday junction DNA helicase RuvA [Photobacterium profundum SS9] Length = 228 Score = 176 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 57/207 (27%), Positives = 97/207 (46%), Gaps = 6/207 (2%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 IG++ G I VLIDV G+ Y + P+ L ++G + +R+D L+ Sbjct: 24 IGRLSGTILEKQPPEVLIDVGGIGYEVQMPMSCFYELPEVGQAAVICTHFIVREDAQLLY 83 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF +R+ F + GVG ++ + +LS +TA++ V S+ ++ + +IPG+ K A Sbjct: 84 GFNKKSERELFREVIKANGVGPKLGLAILSAMTASQFVLSVENEDITTLVKIPGVGKKTA 143 Query: 122 SRIMTELKGKAISLSS---VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 R++ E++ + + + + S A+SAL+ LGY QA Sbjct: 144 ERLVIEMRDRLKGWGEGDLFTPASDAAASNAEIQKYSSARAEDEAVSALIALGYKALQAA 203 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 V V+K E IIR ALR++ Sbjct: 204 KVVSQVVKPE---MSSENIIREALRSM 227 >gi|261855148|ref|YP_003262431.1| Holliday junction DNA helicase RuvA [Halothiobacillus neapolitanus c2] gi|261835617|gb|ACX95384.1| Holliday junction DNA helicase RuvA [Halothiobacillus neapolitanus c2] Length = 206 Score = 176 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 63/203 (31%), Positives = 104/203 (51%), Gaps = 3/203 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++KG + ++L+DVQGV Y + P+ TL L G TL + T +R+D L Sbjct: 1 MIGRLKGILVNKQPPWILLDVQGVGYEVEVPLSTLFDLPANGQEATLLIHTVVREDAFLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +++R+ F L V GVGA++A+GVLS + A E +I + + ++PG+ K Sbjct: 61 YGFSREVERKLFRHLLKVTGVGAKLALGVLSGMNAEEFAGAIARNDIAALIRLPGVGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ + ++ + + + A+SAL LGY ++ Sbjct: 121 AERLVIEMRDRLAE-GFFDGATLATAAGKMGDVVPLAGADQEAMSALEALGYKPAESQRM 179 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V +V QIIRLAL+ Sbjct: 180 VKAV--PGAETLPVEQIIRLALK 200 >gi|170726918|ref|YP_001760944.1| Holliday junction DNA helicase RuvA [Shewanella woodyi ATCC 51908] gi|229560127|sp|B1KGY0|RUVA_SHEWM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|169812265|gb|ACA86849.1| Holliday junction DNA helicase RuvA [Shewanella woodyi ATCC 51908] Length = 205 Score = 176 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 51/207 (24%), Positives = 102/207 (49%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L++V G+ Y + P+ + L + ++ +R+D L Sbjct: 1 MIGRLRGVLVEKQAPEILLEVAGLGYEVQMPLTSFYELPDLNQEAQIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ +R F LL GVG ++ + +LS +TA E V + + + ++PG+ K Sbjct: 61 YGFITKQERALFRLLIKTNGVGPKLGLTILSGMTAGEFVACVERDDIATLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQD--MSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E++ K SL + + + +AI+AL++LGY QA+ Sbjct: 121 AERLLVEMRDKLKSLLETSAGSEREFMLKSNYTPAPVVNTAEEDAIAALLSLGYKPAQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 AV + K+ +I+ +L+++ Sbjct: 181 KAVSAAFKE---GMSSEDLIKSSLKSM 204 >gi|226942024|ref|YP_002797098.1| RuvA [Laribacter hongkongensis HLHK9] gi|254766965|sp|C1D5S2|RUVA_LARHH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226716951|gb|ACO76089.1| RuvA [Laribacter hongkongensis HLHK9] Length = 202 Score = 176 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 104/206 (50%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + + +L+D GV Y + P+ T L + + L+ +R+D L Sbjct: 1 MIGRLSGTLLEKHPPQILVDAGGVGYEVDVPMSTFCRLPGLNEPVVLWTHMAVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R+ F L + GVG ++A+ +LS + EL ++ ++ K ++++PGI K Sbjct: 61 FGFAGRAERELFRQLIRISGVGGKLALALLSSLEPDELARAVAQEDIKTLSRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK SL S +S A + + AL LGY +A A Sbjct: 121 AERLILELRGKLGSLPS--ADLLSPAPAAGAALLVENDERADISQALQALGYSAREAEAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + SV + D + IRLAL+A++ Sbjct: 179 LKSV----PDGTDVATGIRLALKALA 200 >gi|332878178|ref|ZP_08445907.1| Holliday junction DNA helicase RuvA [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683916|gb|EGJ56784.1| Holliday junction DNA helicase RuvA [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 194 Score = 176 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + V+ID QGV Y + + T + L + G+ L+ +++D L Sbjct: 1 MITQLQGKLVEKNPTNVVIDCQGVGYFVNISLNTYAALPE-GEAIKLYTYLQIKEDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R+ F+LL SV GVGA A +LS +TA ++ +I+ I + GI K Sbjct: 60 YGFLTKAEREVFVLLISVSGVGAGTARTMLSSLTAAQVRNAIVNGEVATIQSVKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + L +S V+ A+SAL LG+ + QA Sbjct: 120 AQRVVLDLKDKMLKLQDFADAPISAVSTH----------KEEALSALEVLGFVRKQAEKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +++ + II+ AL+++ Sbjct: 170 VDKIVQAAPDSLSVEDIIKQALKSL 194 >gi|90417110|ref|ZP_01225038.1| Holliday junction DNA helicase RuvA [marine gamma proteobacterium HTCC2207] gi|90331126|gb|EAS46382.1| Holliday junction DNA helicase RuvA [marine gamma proteobacterium HTCC2207] Length = 199 Score = 176 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 104/205 (50%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LIDVQGV Y + + T + +G+ TL +R+D +L Sbjct: 1 MIGRLQGKVIEKQAPDLLIDVQGVGYEVLVSLNTFFGVPGVGEITTLHTHFVVREDVQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +RQ F L V GVG ++A+ +LS ++A + + + + ++PG+ K Sbjct: 61 YGFGTQSERQLFRHLIKVNGVGPKMALAILSGMSANDFAICVHNNDIATLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ K + D + + P + A SAL+ LGY A Sbjct: 121 AERLLIEMRDKIGDM------DATAAGSATGAQEAKPDISQEAESALIALGYKPADAAKI 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + V + ++ D ++IRLAL+++ Sbjct: 175 ISRVATE--SVNDAGELIRLALKSM 197 >gi|307245098|ref|ZP_07527191.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254053|ref|ZP_07535900.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258509|ref|ZP_07540246.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853987|gb|EFM86199.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862978|gb|EFM94925.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867413|gb|EFM99264.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 201 Score = 176 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 66/204 (32%), Positives = 100/204 (49%), Gaps = 5/204 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G I ++IDVQGV Y + P+ + L ++G+ T+F +R+D L Sbjct: 1 MIGRLHGKIIEKQPPEMVIDVQGVGYEVLLPMTSFYSLPQVGEEATIFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ ++ ++ + + +IPGI K Sbjct: 61 FGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFANAVEHEELAKLTKIPGIGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK ++ + V A P A A ALV LGY A Sbjct: 121 AERLLVELKGKFKGVAQSDFFEEHSVETIVATHSHDP--ADEARDALVALGYKLADAEKM 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + V K A Q+IR AL+A Sbjct: 179 IKKV---NKAGATSEQLIREALKA 199 >gi|304393330|ref|ZP_07375258.1| holliday junction DNA helicase RuvA [Ahrensia sp. R2A130] gi|303294337|gb|EFL88709.1| holliday junction DNA helicase RuvA [Ahrensia sp. R2A130] Length = 205 Score = 176 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 86/206 (41%), Positives = 131/206 (63%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ ED+V++DVQGV Y ++C RT+ L G+ L +ETH+R+ +I+L Sbjct: 1 MIGKLKGTVDSFGEDWVILDVQGVGYQVHCSTRTMGTLPAAGEAAQLAIETHVRETEIKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +DL+R WF LLQ+VQGVGARVA+ +L +T E+ +I LQ+ +A+ PG+ K+ Sbjct: 61 YGFTADLERNWFRLLQNVQGVGARVALAILGTLTPGEIASAIALQDKATVARAPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK KA +LS + +++ + S +A+SAL NLGY QA+ A Sbjct: 121 AQRIVAELKDKAPALSGDATGTIGL--QQELGAGAASSAVQDAVSALTNLGYSSQQASAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V L K + A + +IR+ L+ +S Sbjct: 179 VKLALDKAGDDAPSATLIRMGLKELS 204 >gi|212635161|ref|YP_002311686.1| Holliday junction DNA helicase RuvA [Shewanella piezotolerans WP3] gi|226725447|sp|B8CNY0|RUVA_SHEPW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|212556645|gb|ACJ29099.1| DNA recombination protein, RuvA [Shewanella piezotolerans WP3] Length = 205 Score = 176 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 66/207 (31%), Positives = 109/207 (52%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + VLIDV GV Y I P+ + L +IG +F +R+D L Sbjct: 1 MIGRIRGLLVEKQAPEVLIDVSGVGYEIQMPLTSFYELPEIGLEAVVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+S +R F LL GVG ++A+ +LS +TA E V + + + ++PG+ K Sbjct: 61 YGFISKQERALFRLLIKTNGVGPKLALTILSGMTAGEFVACVERDDIATLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E++ K SL +SV + + + +AI+AL++LGY QA+ Sbjct: 121 AERLLVEMRDKLKSLMEASVGSEREFMLQSNYTAPVVANTAEEDAIAALLSLGYKPAQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 AV +V + D +I+ AL+++ Sbjct: 181 KAVSAVY---VDGIDSESLIKSALKSM 204 >gi|302671008|ref|YP_003830968.1| holliday junction DNA helicase RuvA [Butyrivibrio proteoclasticus B316] gi|302395481|gb|ADL34386.1| holliday junction DNA helicase RuvA [Butyrivibrio proteoclasticus B316] Length = 207 Score = 176 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 103/206 (50%), Gaps = 1/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E L + +IDV G+ Y + T+ + IG+ L+ T++++D L Sbjct: 1 MIAYVNGILENLEDGNAVIDVNGIGYNVNISGSTMDRMPGIGEMVKLYTYTNVKEDAFTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLS + F LL +V G+G + + +LS +T +L +I+ +SK +++ PGI K Sbjct: 61 FGFLSRDELNLFKLLITVNGIGPKGGLAILSVMTPDDLRFAILAGDSKSLSKAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI EL+ K + S + + S A++ALV LGY A A Sbjct: 121 AERITLELRDKLKLSEDELLGGTSASAADIGSMDGDNSARDEAVAALVALGYNSSDAMKA 180 Query: 181 VVSVLKKEKN-IADDSQIIRLALRAI 205 V VL K D +++LAL+ + Sbjct: 181 VRKVLASSKEAGEDTEILLKLALKEM 206 >gi|190149554|ref|YP_001968079.1| holliday junction ATP-dependent DNA helicase RuvA [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303249558|ref|ZP_07335765.1| holliday junction ATP-dependent DNA helicase RuvA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307251815|ref|ZP_07533717.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307262875|ref|ZP_07544499.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|229470525|sp|B3H0C5|RUVA_ACTP7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189914685|gb|ACE60937.1| holliday junction ATP-dependent DNA helicase RuvA [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302651632|gb|EFL81781.1| holliday junction ATP-dependent DNA helicase RuvA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860722|gb|EFM92733.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306871780|gb|EFN03500.1| Holliday junction DNA helicase motor protein [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 201 Score = 176 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 67/204 (32%), Positives = 100/204 (49%), Gaps = 5/204 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G I ++IDVQGV Y + P+ + L +IG+ T+F +R+D L Sbjct: 1 MIGRLHGKIIEKQPPEMVIDVQGVGYEVLLPMTSFYSLPQIGEEATIFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ ++ ++ + + +IPGI K Sbjct: 61 FGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFANAVEHEELAKLTKIPGIGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK ++ + V A P A A ALV LGY A Sbjct: 121 AERLLVELKGKFKGVAQSDFFEEHSVETIVATHSHDP--ADEARDALVALGYKLADAEKM 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + V K A Q+IR AL+A Sbjct: 179 IKKV---NKAGATSEQLIREALKA 199 >gi|88800180|ref|ZP_01115748.1| Holliday junction DNA helicase motor protein [Reinekea sp. MED297] gi|88777026|gb|EAR08233.1| Holliday junction DNA helicase motor protein [Reinekea sp. MED297] Length = 201 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 103/205 (50%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + +L+DV G+ Y I CP+ T+ L G+ TL +R+D L Sbjct: 1 MIGRIQGTLLENKAPELLVDVHGLGYEIQCPLSTIFALPATGEIVTLHTHLAIREDAHVL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L + GVG ++A+ +LS + ++SI Q+ + +IPG+ K Sbjct: 61 YGFATQKERTLFRTLIKISGVGPKLALAILSGMETNRFIQSIQDQDPGALVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K K L S ++ + S +A AL+ LGY QA+ A Sbjct: 121 AERLIVEMKDKLAQLGSQ-GAELITPMEALVEKNSRTDALQDAEGALIALGYKPTQASKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +V + IIR AL+A+ Sbjct: 180 VSNVAA---DGMSSEDIIRAALKAM 201 >gi|56477680|ref|YP_159269.1| Holliday junction DNA helicase RuvA [Aromatoleum aromaticum EbN1] gi|81357290|sp|Q5P2U6|RUVA_AZOSE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|56313723|emb|CAI08368.1| Holliday junction DNA helicase [Aromatoleum aromaticum EbN1] Length = 199 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 99/206 (48%), Gaps = 9/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + +++D GV Y I P+ T L G+ +LF +R+D L Sbjct: 1 MIGRITGILLEKNPPQIVVDTHGVGYEIDVPMSTFYGLPATGESLSLFTHLAIREDGHFL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L V G+GAR A+ VLS ++ ++L +++ LQ + + +IPGI K Sbjct: 61 YGFASADERAAFRQLLKVSGIGARTALSVLSGLSVSDLAQAVALQETGRLVKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K + + ++AL+ LGY +A +A Sbjct: 121 AERLLLELRDKLGR-----ALPGFGASTVPGAAAQPADSRSDILNALLALGYSDKEAQSA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + ++ S IR AL+ +S Sbjct: 176 LKAI----PPETGVSDGIRQALKLLS 197 >gi|149910565|ref|ZP_01899204.1| Holliday junction DNA helicase motor protein [Moritella sp. PE36] gi|149806408|gb|EDM66381.1| Holliday junction DNA helicase motor protein [Moritella sp. PE36] Length = 206 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 98/205 (47%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L+DV GV Y I P+ LG + ++ +R+D L Sbjct: 1 MIGRLRGTLLEKQPPEILLDVNGVGYEIKLPMSCFYELGDVDKEVIVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++R F L V GVG ++ + +LS +TA + + + + ++PG+ K Sbjct: 61 YGFNNKMERLMFRELIKVNGVGPKLGLAILSGMTANQFAHCVEHDDINSLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E++ + + + + + + Q + + + A AL+ LGY Q Sbjct: 121 AERLLVEMRDRLKNWVTQDLFTPEADKAQLQGYGNTASNAIEEAEEALIGLGYKPAQVAK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + V + +IIRL+LRA Sbjct: 181 MIKQVAQ---PSMSCEEIIRLSLRA 202 >gi|331007236|ref|ZP_08330443.1| Holliday junction DNA helicase RuvA [gamma proteobacterium IMCC1989] gi|330418952|gb|EGG93411.1| Holliday junction DNA helicase RuvA [gamma proteobacterium IMCC1989] Length = 207 Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 101/205 (49%), Gaps = 2/205 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + Y+LIDV GV Y + P+ + L G+ L + ++ +L Sbjct: 1 MIGRLSGVLIEKQAPYLLIDVAGVGYEVQAPMTSFYPLPVTGEKVILHTHLSVSENAHQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 F F + +R+ F L V GVG ++A+ +LS + E V+ + N + ++PG+ K Sbjct: 61 FAFYTLEERRLFRTLIKVSGVGPKMALAILSGMPVNEFVQCVKGDNVAALVRVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC-SMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + L+ + VN E A + +A SAL+ LGY A Sbjct: 121 AERLIIEVKDRLGDLAEWESGGAANVNAESATPELLSNAVVADAESALIALGYKPTVAAQ 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + + K E ++ +IRLAL++ Sbjct: 181 MISAAQKIE-SVTSSEALIRLALKS 204 >gi|145632564|ref|ZP_01788298.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae 3655] gi|229845014|ref|ZP_04465151.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae 6P18H1] gi|144986759|gb|EDJ93311.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae 3655] gi|229812148|gb|EEP47840.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae 6P18H1] Length = 204 Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 104/204 (50%), Gaps = 4/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L++VQGV Y + P+ + L +IG TLF +R+D L Sbjct: 1 MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHFVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ + +I + + +IPG+ K Sbjct: 61 FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKGK + S + + + + S+ + + AISAL+ LGY +A Sbjct: 121 AERLLVELKGKFKGVKQSDFFVESTHIPSVPSIEPSVENSSDEAISALIALGYKPSEAEK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 V V K E Q+IR AL+ Sbjct: 181 MVKRVAKPE---LTSEQVIREALK 201 >gi|157375170|ref|YP_001473770.1| Holliday junction DNA helicase RuvA [Shewanella sediminis HAW-EB3] gi|189045772|sp|A8FUW9|RUVA_SHESH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|157317544|gb|ABV36642.1| Holliday junction DNA helicase RuvA [Shewanella sediminis HAW-EB3] Length = 205 Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 54/207 (26%), Positives = 108/207 (52%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L++VQG+ Y + P+ + L ++ ++ +R+D L Sbjct: 1 MIGRLRGLLVEKQAPEILLEVQGLGYEVQMPLTSFYELPELNQEAIVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ +R F LL GVG ++A+ +LS +TA+E V + + + ++PG+ K Sbjct: 61 YGFITKQERALFRLLIKTNGVGPKLALTILSGMTASEFVACVERDDIATLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQD--MSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E++ K SL + + + +AI+AL++LGY QA+ Sbjct: 121 AERLLVEMRDKLKSLMEASAGSEREFMLKSNYTPAPVINTAEEDAIAALLSLGYKPAQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 AV +V + + D +I+ +L+++ Sbjct: 181 KAVSAVYQ---DGMDSETLIKSSLKSM 204 >gi|37526027|ref|NP_929371.1| Holliday junction DNA helicase motor protein [Photorhabdus luminescens subsp. laumondii TTO1] gi|44888380|sp|Q7N548|RUVA_PHOLL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|36785457|emb|CAE14404.1| Holliday junction DNA helicase [Photorhabdus luminescens subsp. laumondii TTO1] Length = 205 Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 100/206 (48%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VL++ GV Y ++ P+ L G LF +R+D L Sbjct: 1 MIGRLRGIVLEKQPPLVLLETNGVGYEVHMPMTCFYELPDAGQEAVLFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V +I + + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAIEREAIVSLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN--KEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + L+ + S +N S A +ALV+LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNQSSDINLPATAKQTTSDADSEAEAAAALVSLGYKPQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 V + K AD +IR ALRA Sbjct: 181 RMVSKIAK---PGADCETLIREALRA 203 >gi|326795234|ref|YP_004313054.1| Holliday junction ATP-dependent DNA helicase ruvA [Marinomonas mediterranea MMB-1] gi|326545998|gb|ADZ91218.1| Holliday junction ATP-dependent DNA helicase ruvA [Marinomonas mediterranea MMB-1] Length = 199 Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 108/205 (52%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +I G + +L+DV G+ Y +Y + T+ L IG+ L +++D L Sbjct: 1 MISRIVGTLIEKMPPELLVDVNGIGYEVYASMTTIYDLASIGETVVLHTHLQVKEDSHTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F +L V G+G ++A+ +LS ++ +EL+E++ N + +IPG+ K Sbjct: 61 YGFHSKDERAVFRVLIKVNGIGPKMALAILSSMSTSELIENVQESNVDALVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K L +QD+ K + + P A +ALV LGY +A+ A Sbjct: 121 AERLIIELRDK---LGQAAKQDLFSTPKVLKQVQADP--RQEAEAALVALGYKPQEASKA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V + + +D II+ AL+ + Sbjct: 176 VAKVPQ---DGSDSETIIKAALKGM 197 >gi|225374901|ref|ZP_03752122.1| hypothetical protein ROSEINA2194_00524 [Roseburia inulinivorans DSM 16841] gi|225213284|gb|EEG95638.1| hypothetical protein ROSEINA2194_00524 [Roseburia inulinivorans DSM 16841] Length = 203 Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 106/206 (51%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +E EDY++++ G+ Y I+ +T L +G+ ++ H+R+D + L Sbjct: 1 MYAYIKGTLEETGEDYIVVEAGGIGYQIFTTGQTFQYLPSMGEEVKVYTYLHVREDAMIL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ D F LL V G+G + A+ +LS +T +L +++ ++K IA+ PG+ K Sbjct: 61 FGFLTKDDLFVFRLLLGVSGIGPKGALAILSVMTTDDLRFAVLGDDAKAIAKAPGVGAKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + Q+ N Q AI ALV LGY +A A Sbjct: 121 AQRLILELKDKLSLEDAFEQKLAKNDNPVQNKA---KGAKNEAIEALVALGYSSSEALKA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + + D I++ AL+ ++ Sbjct: 178 LNGI--EITDDTDVEDILKAALKNMA 201 >gi|296313720|ref|ZP_06863661.1| holliday junction DNA helicase RuvA [Neisseria polysaccharea ATCC 43768] gi|296839643|gb|EFH23581.1| holliday junction DNA helicase RuvA [Neisseria polysaccharea ATCC 43768] Length = 194 Score = 174 bits (441), Expect = 6e-42, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 103/205 (50%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL +++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK ++ V S + +S L+ LGY + +A A Sbjct: 121 AERMVLELRGKLVA---------HTVTDGLFAAPSENDETNDIVSTLLALGYSEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V D + +RLAL+ + Sbjct: 172 VKGV----PKGTDVGEGVRLALKNL 192 >gi|240949538|ref|ZP_04753878.1| Holliday junction DNA helicase RuvA [Actinobacillus minor NM305] gi|240296111|gb|EER46772.1| Holliday junction DNA helicase RuvA [Actinobacillus minor NM305] Length = 200 Score = 174 bits (441), Expect = 6e-42, Method: Composition-based stats. Identities = 65/203 (32%), Positives = 100/203 (49%), Gaps = 6/203 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G I +L+DVQGV Y + P+ + L +IG+ T+F +R+D L Sbjct: 1 MIGRLHGKIIEKQPPEMLLDVQGVGYELLLPMTSFYNLPQIGEETTIFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ ++ ++ + + +IPGI K Sbjct: 61 FGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFANAVENEELAKLTKIPGIGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK LS Q D+ + + S + A AL+ LGY A Sbjct: 121 AERLLVELKGKFKGLS---QTDLFIEQPHETIMASSVEPSDEARDALIALGYKPADAEKM 177 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 + V A Q+IR AL+ Sbjct: 178 IKKV---NLVGATSEQLIREALK 197 >gi|86574402|gb|ABD08959.1| Holliday junction DNA helicase subunit RuvA [Rhodopseudomonas palustris HaA2] Length = 222 Score = 174 bits (441), Expect = 6e-42, Method: Composition-based stats. Identities = 90/206 (43%), Positives = 131/206 (63%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ EDYV++DV GV Y ++C RTL L G+ L +ET++R+DQI+L Sbjct: 18 MIGKLKGIIDSYGEDYVVLDVHGVGYQVHCASRTLQALPAPGEAAVLSIETYVREDQIKL 77 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +D +R+WF LLQ+VQ VGA+VA+ VLS + +L +I L++ +A+ PG+ K+ Sbjct: 78 FGFRTDTEREWFRLLQTVQSVGAKVALAVLSTLPPNDLANAIALRDKAAVARTPGVGPKV 137 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK K +L +V + H P +AISALVNLGYGQ QA A Sbjct: 138 AERIVTELKDKVPALGNVDPAVVHLSGALDDHRAPRP--VTDAISALVNLGYGQPQAAAA 195 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + + A +Q+I+L L+ +S Sbjct: 196 IAAASRAAGDDAATAQLIKLGLKELS 221 >gi|189424313|ref|YP_001951490.1| Holliday junction DNA helicase RuvA [Geobacter lovleyi SZ] gi|229560034|sp|B3E790|RUVA_GEOLS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189420572|gb|ACD94970.1| Holliday junction DNA helicase RuvA [Geobacter lovleyi SZ] Length = 200 Score = 174 bits (441), Expect = 6e-42, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 100/205 (48%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G I D+V++DV GV Y + P T L + G TL + T +R+D I L Sbjct: 1 MIALLTGQIAHKSPDHVILDVHGVGYRVMIPFSTYYELPEEGQ-ATLHIHTSVREDAILL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ +F LL SV G+G ++A +LS I +L ++ + ++ IPGI K Sbjct: 60 YGFRTRTEKSFFQLLISVSGIGPKLARDILSNIQPPQLAAALQQGDLHKLSAIPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK KA L S V + S + SALVNLGY Q Sbjct: 120 AERLVLELKDKAGKLDSGSIPAGDAVGR----SLPAGSVLDDVSSALVNLGYKDPQVRKV 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + A ++++ AL+ + Sbjct: 176 LAEL--DCAGSASVEEVLKQALKIL 198 >gi|257465001|ref|ZP_05629372.1| Holliday junction DNA helicase RuvA [Actinobacillus minor 202] gi|257450661|gb|EEV24704.1| Holliday junction DNA helicase RuvA [Actinobacillus minor 202] Length = 200 Score = 174 bits (441), Expect = 7e-42, Method: Composition-based stats. Identities = 65/203 (32%), Positives = 100/203 (49%), Gaps = 6/203 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G I +L+DVQGV Y + P+ + L +IG+ T+F +R+D L Sbjct: 1 MIGRLHGKIIEKQPPEMLLDVQGVGYELLLPMTSFYNLPQIGEDTTIFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ ++ ++ + + +IPGI K Sbjct: 61 FGFAQKQDRMLFRELIKTNGVGPKLALAILSAMSVSQFASAVENEELAKLTKIPGIGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK LS Q D+ + + S + A AL+ LGY A Sbjct: 121 AERLLVELKGKFKGLS---QTDLFIEQPHETIMTSSAEPSDEARDALIALGYKPADAEKM 177 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 + V A Q+IR AL+ Sbjct: 178 IKKV---NLVGATSEQLIREALK 197 >gi|332290325|ref|YP_004421177.1| Holliday junction DNA helicase RuvA [Gallibacterium anatis UMN179] gi|330433221|gb|AEC18280.1| Holliday junction DNA helicase RuvA [Gallibacterium anatis UMN179] Length = 202 Score = 174 bits (440), Expect = 8e-42, Method: Composition-based stats. Identities = 60/204 (29%), Positives = 98/204 (48%), Gaps = 4/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + +L++V G+ Y + P+ + L ++ ++ +R+D L Sbjct: 1 MIGHLRGILLEKSPPEILLEVNGIGYEVLLPMTSFYHLPEVNMEAAIYTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ +E +I + + +IPG+ K Sbjct: 61 FGFYHKQDRTLFRELIKTNGVGPKLALAILSAMSVSEFSYAIEREELSKLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + + + S +AISALV LGY +A Sbjct: 121 AERLIVELKGKFKAYQHDDFF-IEQTTTQSGIDTEKVSATDDAISALVALGYKPAEAEKM 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V V K E D Q+IR AL++ Sbjct: 180 VKRVAKPEW---DSEQLIREALKS 200 >gi|284007614|emb|CBA73228.1| Holliday junction ATP-dependent DNA helicase [Arsenophonus nasoniae] Length = 204 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 101/205 (49%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL+++ GV Y ++ P+ L +IG L + +R+D L Sbjct: 1 MIGRLRGTILEKQPPIVLLELNGVGYEVHMPMTCFYELPEIGQEVVLLTQFIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V +I + + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAYQFVSAIEQEAIASLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCV-NKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + L+ + + + A + A+SAL++LGY A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFKQSAIDLPGSSAAKQNSHDIEAEAVSALISLGYKPQDASR 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + V + +IR ALRA Sbjct: 181 MIGRVAN---GATNCEALIREALRA 202 >gi|145636553|ref|ZP_01792221.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae PittHH] gi|145270378|gb|EDK10313.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae PittHH] Length = 204 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 103/205 (50%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L++VQGV Y + P+ + L +IG TLF +R+D L Sbjct: 1 MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHFVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ + +I + + +IPG+ K Sbjct: 61 FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKGK + S + + + + + + AISAL+ LGY +A Sbjct: 121 AERLLVELKGKFKGIKQSDFFVESTHIRSVPSIEPHTENSSDEAISALIALGYKPSEAEK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V V K E Q+IR AL+A Sbjct: 181 MVKRVAKPE---LTSEQVIREALKA 202 >gi|254674127|emb|CBA09911.1| holliday junction DNA helicase [Neisseria meningitidis alpha275] gi|325145258|gb|EGC67537.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis M01-240013] Length = 194 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL +++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK ++ V + +S L+ LGY + +A A Sbjct: 121 AERMVLELRGKLVA---------HTVTDGLFAAAPAADETEDIVSTLLALGYSEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V D + +RLAL+ + Sbjct: 172 VKGV----PEGTDVGEGVRLALKNL 192 >gi|192289700|ref|YP_001990305.1| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris TIE-1] gi|229560122|sp|B3QHS2|RUVA_RHOPT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|192283449|gb|ACE99829.1| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris TIE-1] Length = 205 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 93/206 (45%), Positives = 133/206 (64%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ EDYV++DVQGV Y ++C RTL L G+ TL +ET++R+DQI+L Sbjct: 1 MIGKLKGIIDSYGEDYVILDVQGVGYQVHCASRTLQALPSPGEAATLSIETYVREDQIKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +D +R+WF LLQ+VQ VGA+VA+ VLS + +L +I L++ +A+ PG+ K+ Sbjct: 61 FGFRTDTEREWFRLLQTVQSVGAKVALAVLSTLPPHDLANAIALRDKAAVARTPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK K +LS+V + P +AISALVNLGYGQ QA A Sbjct: 121 AERIVTELKDKVPALSAVDPAVVKLSG--AIDDNRAPRAVTDAISALVNLGYGQPQAAAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + + A+ +Q+I+L L+ +S Sbjct: 179 VATASRTAGEDAETAQLIKLGLKELS 204 >gi|162138516|ref|YP_487870.2| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris HaA2] Length = 205 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 90/206 (43%), Positives = 131/206 (63%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ EDYV++DV GV Y ++C RTL L G+ L +ET++R+DQI+L Sbjct: 1 MIGKLKGIIDSYGEDYVVLDVHGVGYQVHCASRTLQALPAPGEAAVLSIETYVREDQIKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +D +R+WF LLQ+VQ VGA+VA+ VLS + +L +I L++ +A+ PG+ K+ Sbjct: 61 FGFRTDTEREWFRLLQTVQSVGAKVALAVLSTLPPNDLANAIALRDKAAVARTPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK K +L +V + H P +AISALVNLGYGQ QA A Sbjct: 121 AERIVTELKDKVPALGNVDPAVVHLSGALDDHRAPRP--VTDAISALVNLGYGQPQAAAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + + A +Q+I+L L+ +S Sbjct: 179 IAAASRAAGDDAATAQLIKLGLKELS 204 >gi|150397836|ref|YP_001328303.1| Holliday junction DNA helicase RuvA [Sinorhizobium medicae WSM419] gi|166200266|sp|A6UCT8|RUVA_SINMW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|150029351|gb|ABR61468.1| Holliday junction DNA helicase RuvA [Sinorhizobium medicae WSM419] Length = 205 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 95/206 (46%), Positives = 140/206 (67%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + ED+V++DV GV Y+ +C RTL+ LG+ G+ LF+ET++R+DQ++L Sbjct: 1 MIGKLKGTIDEIGEDHVVLDVHGVGYVAHCSARTLAKLGRAGEAAVLFIETYVREDQLKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLS L+R+WF LLQSVQGVG++VA+ VLS +T EL +I LQ+ I++ PG+ K+ Sbjct: 61 FGFLSALEREWFRLLQSVQGVGSKVALAVLSTLTPGELANAIALQDKTSISRAPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA + + + + + + P +A+SAL NLGY +DQA A Sbjct: 121 AVRIVTELKNKAPAFVGEMAPSIGLKQELGEGVAAAP--VSDAVSALTNLGYSRDQAANA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + LK AD +++IRL L+ +S Sbjct: 179 VAAALKNGGEGADSARLIRLGLKELS 204 >gi|311694932|gb|ADP97805.1| Holliday junction ATP-dependent DNA helicase RuvA [marine bacterium HP15] Length = 209 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 60/209 (28%), Positives = 98/209 (46%), Gaps = 7/209 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + L++ G+ Y + P T L + GD TL +R+D L Sbjct: 1 MIGRIRGILVEKAPGQALVECAGLGYEVDIPYTTFFHLPETGDEVTLHTHFAVREDAQSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S LDR F LL V GVG ++A+G+LS + A + + + ++S + ++PG+ K Sbjct: 61 YGFASSLDRDLFRLLIKVNGVGPKLAVGILSGLDAQQFIRCVENRDSASLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSS----VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ E+ + L + P A +AL+ LGY + Sbjct: 121 AERLLIEMADRIGQLEGQFVPTSPEATGVGQPGGQGPAGGPVATEEAEAALIALGYKPQE 180 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A A+ V ++ +IRLALR + Sbjct: 181 AAKAISKVAEE---GMSSETLIRLALRNM 206 >gi|304312895|ref|YP_003812493.1| Holliday junction resolvasome DNA-binding subunit [gamma proteobacterium HdN1] gi|301798628|emb|CBL46860.1| Holliday junction resolvasome DNA-binding subunit [gamma proteobacterium HdN1] Length = 208 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 53/207 (25%), Positives = 90/207 (43%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + ++IDV GV Y + P+ T L +G+ L +R+D L Sbjct: 1 MITHLSGTLRHKQAPQLVIDVSGVGYELDAPMTTFYRLPSLGERVELLTHLVVREDAHVL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L V G+G +VA+ +LS I + V I + + +IPG+ K Sbjct: 61 FGFATQEERSLFRALIKVTGIGPKVALAILSGIEVPQFVRCINCHDVSALIRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN--KEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E++ + + + E A +AL+ LGY +A Sbjct: 121 AERLIVEMQDRLPRTLETSLTALQEESLLGENTRPQQAHRPLDEAEAALIALGYKPQEAA 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 + ++ Q+IR AL+ + Sbjct: 181 RCLNAL---NTEGLSSEQLIRQALKNM 204 >gi|39934175|ref|NP_946451.1| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris CGA009] gi|81563776|sp|Q6NAT0|RUVA_RHOPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|39648023|emb|CAE26543.1| RuvA; Holliday branch migration protein [Rhodopseudomonas palustris CGA009] Length = 205 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 93/206 (45%), Positives = 133/206 (64%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ EDYV++DVQGV Y ++C RTL L G+ TL +ET++R+DQI+L Sbjct: 1 MIGKLKGIIDSYGEDYVILDVQGVGYQVHCASRTLQALPSPGEAATLSIETYVREDQIKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +D +R+WF LLQ+VQ VGA+VA+ VLS + +L +I L++ +A+ PG+ K+ Sbjct: 61 FGFRTDTEREWFRLLQTVQSVGAKVALAVLSTLPPHDLANAIALRDKAAVARTPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK K +LS+V + P +AISALVNLGYGQ QA A Sbjct: 121 AERIVTELKDKVPALSAVDPAVVKLSG--AIDDNRAPRAVADAISALVNLGYGQPQAAAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + + A+ +Q+I+L L+ +S Sbjct: 179 VATASRTAGEDAETAQLIKLGLKELS 204 >gi|118581082|ref|YP_902332.1| Holliday junction DNA helicase RuvA [Pelobacter propionicus DSM 2379] gi|166230581|sp|A1ASF4|RUVA_PELPD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|118503792|gb|ABL00275.1| Holliday junction DNA helicase subunit RuvA [Pelobacter propionicus DSM 2379] Length = 198 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 108/205 (52%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G I D++++DV GV Y + P T L + G +L + T +R+D I+L Sbjct: 1 MIALLTGQIAQKSPDHIILDVNGVGYRVQIPFSTYYDLPEEG-TVSLHIHTSVREDAIQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + L++ +F LL SV GVG R+A +LS I +L +++ + ++++ +PGI K Sbjct: 60 YGFRTSLEKSFFQLLLSVSGVGPRLARDILSNIQPAQLAQALGQGDIRMLSAVPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K L D+S V + + +SAL+NLGY + Q Sbjct: 120 AERLVLELKEKVGKL------DLSSVVVPEPRQMPEDDLLEDVVSALLNLGYKEPQVRKV 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + A +++ AL+++ Sbjct: 174 LAGL--NPGSDASLEGVLKQALKSL 196 >gi|158422139|ref|YP_001523431.1| Holliday junction DNA helicase RuvA [Azorhizobium caulinodans ORS 571] gi|172048036|sp|A8IM99|RUVA_AZOC5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|158329028|dbj|BAF86513.1| DNA recombination protein [Azorhizobium caulinodans ORS 571] Length = 206 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 80/206 (38%), Positives = 135/206 (65%), Gaps = 1/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ ED++++DV GV Y+++C RTL L ++G+ LF+ETH+R+DQIRL Sbjct: 1 MIGKLKGTVDSFGEDHLILDVHGVGYLVHCSGRTLQALPRVGEAAVLFIETHVREDQIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+++ +R+WF LLQ +QG+G + A+ +LS + ++L +++ L + +A+ G+ ++ Sbjct: 61 FGFVTEAEREWFRLLQGIQGIGTKTALAILSTLKPSDLAQAVALGDKTALARANGVGPRV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+TELK K + ++ +A + + A +A+SALVNLGYGQ QA TA Sbjct: 121 ATRIVTELKDKVPAFTAADPGLARLAADVEATEAAGGALA-DAVSALVNLGYGQAQAHTA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + +K A +IRL L+ ++ Sbjct: 180 IAAAGRKAGEDATTETLIRLGLKELA 205 >gi|161510997|ref|YP_087904.2| Holliday junction DNA helicase motor protein [Mannheimia succiniciproducens MBEL55E] gi|88941980|sp|Q65UP1|RUVA_MANSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA Length = 204 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 98/205 (47%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L+DV G+ Y + P+ + L +IG LF +R+D L Sbjct: 1 MIGRLQGILLEKQPPEILLDVHGIGYELLLPMTSFYNLPEIGQETVLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + DR F L GVG ++A+ +LS ++ E +I + + +IPG+ K Sbjct: 61 FGFSAKTDRTLFRELIKTNGVGPKLALAILSAMSVNEFAYAIEHEELSKLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKGK + + S V S A A++AL+ LGY A Sbjct: 121 AERLLVELKGKFKGIKQPDFFVESSHVGAVDPVTTSPEVPAEEAVAALMALGYKASDAEK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V + K Q+IR AL+A Sbjct: 181 MVKRIAKPH---LTSEQLIREALKA 202 >gi|86134376|ref|ZP_01052958.1| Holliday junction ATP-dependent DNA helicase RuvA [Polaribacter sp. MED152] gi|85821239|gb|EAQ42386.1| Holliday junction ATP-dependent DNA helicase RuvA [Polaribacter sp. MED152] Length = 193 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 106/205 (51%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + V+ID GV Y+++ + T S L + + L+ +R D L Sbjct: 1 MITQVRGRLVEKSPTEVVIDCNGVGYLLHISLNTFSGLPE-DENVVLYTHLSIRDDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF++ +R+ F LL SV GVG +A + S +T+ E+ ++I +N VI + GI K Sbjct: 60 FGFINKTEREVFKLLISVSGVGPSIARTMCSSMTSDEIQQAIASENVAVIQSVKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + ++ + +S N A+SAL LG+ + Q+ Sbjct: 120 AQRVIVDLKDKILKTFNIDEVSVSASNTN----------KDEALSALEVLGFNRKQSDKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +VLK + A II+LAL+ + Sbjct: 170 VNTVLKANPD-ASVENIIKLALKNL 193 >gi|222055417|ref|YP_002537779.1| Holliday junction DNA helicase RuvA [Geobacter sp. FRC-32] gi|254766963|sp|B9LZC5|RUVA_GEOSF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|221564706|gb|ACM20678.1| Holliday junction DNA helicase RuvA [Geobacter sp. FRC-32] Length = 199 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + D++++DV GV Y + P T L + G +L + TH+++D I L Sbjct: 1 MIALLTGKLAHKSPDFIILDVNGVGYRVQIPFSTYYALPEGGSSVSLNIFTHVKEDAINL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +++ F LL SV G+G ++ G+LS I A L +++I + +A IPGI K Sbjct: 61 YGFRTMEEKEMFQLLISVSGIGPKLGNGILSNIEAQNLSDALIRGDLARLATIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K L + ++ A + + +SALVNLGY + Sbjct: 121 AERLVLELREKVKKLGH------GPLQQDVAPADAHNDMRDDVVSALVNLGYKEAVVQKT 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + A +++ AL+ + Sbjct: 175 VDEI--GVAADATVESLLKQALKKL 197 >gi|261378519|ref|ZP_05983092.1| holliday junction DNA helicase RuvA [Neisseria cinerea ATCC 14685] gi|269145069|gb|EEZ71487.1| holliday junction DNA helicase RuvA [Neisseria cinerea ATCC 14685] Length = 194 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ +F + +R+D L Sbjct: 1 MISRLTGKLVEKTPPQIVIDVNGVGYEADVSMQTFYNLPPLGETVQVFTQLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL +++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK I V S + +S L+ LGY + +A A Sbjct: 121 AERMVLELRGKLI---------THTVTDGLFATPSENDETNDIVSTLLALGYSEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + D + +RLAL+ + Sbjct: 172 VKGI----PKGTDVGEGVRLALKNL 192 >gi|52306819|gb|AAU37319.1| RuvA protein [Mannheimia succiniciproducens MBEL55E] Length = 215 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 98/205 (47%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L+DV G+ Y + P+ + L +IG LF +R+D L Sbjct: 12 MIGRLQGILLEKQPPEILLDVHGIGYELLLPMTSFYNLPEIGQETVLFTHLVVREDAHLL 71 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + DR F L GVG ++A+ +LS ++ E +I + + +IPG+ K Sbjct: 72 FGFSAKTDRTLFRELIKTNGVGPKLALAILSAMSVNEFAYAIEHEELSKLVKIPGVGKKT 131 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKGK + + S V S A A++AL+ LGY A Sbjct: 132 AERLLVELKGKFKGIKQPDFFVESSHVGAVDPVTTSPEVPAEEAVAALMALGYKASDAEK 191 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V + K Q+IR AL+A Sbjct: 192 MVKRIAKPH---LTSEQLIREALKA 213 >gi|316932642|ref|YP_004107624.1| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris DX-1] gi|315600356|gb|ADU42891.1| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris DX-1] Length = 205 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 92/206 (44%), Positives = 132/206 (64%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ EDYV++DV GV Y ++C RTL L G+ TL +ET++R+DQI+L Sbjct: 1 MIGKLKGVIDSYGEDYVILDVHGVGYQVHCASRTLQALPSPGEAATLSIETYVREDQIKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +D +R+WF LLQ+VQ VGA+VA+ VLS + +L +I L++ +A+ PG+ K+ Sbjct: 61 FGFRTDTEREWFRLLQTVQSVGAKVALAVLSTLPPHDLANAIALRDKAAVARTPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK K +LS+V + + P +AISALVNLGYGQ QA A Sbjct: 121 AERIVTELKDKVPALSNVDPAVVHLSGAIDDNTA--PRAVADAISALVNLGYGQPQAAAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + + A +Q+I+L L+ +S Sbjct: 179 VAAASRSAGEDAATAQLIKLGLKELS 204 >gi|325205349|gb|ADZ00802.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis M04-240196] Length = 194 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL +++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK ++ V + +S L+ LGY + +A A Sbjct: 121 AERMVLELRGKLVA---------HTVTDGLFAAAPAADETEDIVSTLLALGYSEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V D + +RLAL+ + Sbjct: 172 VKGV----PKGTDVGEGVRLALKNL 192 >gi|325135068|gb|EGC57696.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis M13399] Length = 194 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL ++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK ++ V + +S L+ LGY + +A A Sbjct: 121 AERMVLELRGKLVA---------HAVTDGLFAAAPAADETEDIVSTLLALGYSEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V D + +RLAL+ + Sbjct: 172 VKGV----PEGTDVGEGVRLALKNL 192 >gi|322514922|ref|ZP_08067937.1| crossover junction ATP-dependent DNA helicase RuvA [Actinobacillus ureae ATCC 25976] gi|322119110|gb|EFX91264.1| crossover junction ATP-dependent DNA helicase RuvA [Actinobacillus ureae ATCC 25976] Length = 201 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 99/204 (48%), Gaps = 5/204 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G I ++IDVQGV Y + P+ + L ++G+ T+F +R+D L Sbjct: 1 MIGRLHGKIIEKQPPEMVIDVQGVGYEVLLPMTSFYSLPQVGEEATIFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ ++ ++ + + +IP I K Sbjct: 61 FGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFANAVENEELAKLTKIPSIGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK ++ + V A P A A ALV LGY A Sbjct: 121 AERLLVELKGKFKGVAQSDFFEEHSVEMIVATHSHDP--ADEAQDALVALGYKLADADKM 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + V K A Q+IR AL+A Sbjct: 179 IKKV---NKAGATSEQLIREALKA 199 >gi|260467057|ref|ZP_05813237.1| Holliday junction DNA helicase RuvA [Mesorhizobium opportunistum WSM2075] gi|259029166|gb|EEW30462.1| Holliday junction DNA helicase RuvA [Mesorhizobium opportunistum WSM2075] Length = 206 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 84/207 (40%), Positives = 132/207 (63%), Gaps = 3/207 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ + ED+ L+D+ GV Y+ YC RTL+ L G+ LF+ET++R+D +RL Sbjct: 1 MIGKLKGTLDEIDEDHCLVDIHGVGYVAYCSARTLAALPSPGEAVVLFIETYVREDMLRL 60 Query: 61 FGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GF S L+R+WF LL +V GVGA+VA+ +LS +T +L +I L++ ++++ PG+ K Sbjct: 61 YGFQSQLEREWFRLLMNNVPGVGAKVALAILSTLTPADLANAIALRDIAMVSRAPGVGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 +A RI+TELK KA + + + + + P +A+SALVNLGY +D A Sbjct: 121 VAERIVTELKNKAPAYAGAASGTIGLKQELGDGVAPAP--ITDAVSALVNLGYSRDTAAN 178 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV + LK AD S++IR L+ ++ Sbjct: 179 AVSAALKTAGEDADASKLIRFGLKELA 205 >gi|15676189|ref|NP_273321.1| Holliday junction DNA helicase motor protein [Neisseria meningitidis MC58] gi|20455266|sp|Q9K1A2|RUVA_NEIMB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|7225489|gb|AAF40719.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis MC58] gi|261391796|emb|CAX49251.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis 8013] gi|316985194|gb|EFV64146.1| holliday junction DNA helicase RuvA [Neisseria meningitidis H44/76] gi|325137090|gb|EGC59686.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis M0579] gi|325139154|gb|EGC61700.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis ES14902] gi|325141101|gb|EGC63604.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis CU385] gi|325199468|gb|ADY94923.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis H44/76] gi|325202908|gb|ADY98362.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis M01-240149] gi|325207293|gb|ADZ02745.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis NZ-05/33] Length = 194 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL ++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK ++ V + +S L+ LGY + +A A Sbjct: 121 AERMVLELRGKLVA---------HTVTDGLFAAAPAADETEDIVSTLLALGYSEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V D + +RLAL+ + Sbjct: 172 VKGV----PEGTDVGEGVRLALKNL 192 >gi|152996211|ref|YP_001341046.1| Holliday junction DNA helicase RuvA [Marinomonas sp. MWYL1] gi|189045756|sp|A6VXD2|RUVA_MARMS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|150837135|gb|ABR71111.1| Holliday junction DNA helicase RuvA [Marinomonas sp. MWYL1] Length = 200 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 100/205 (48%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + +++DV G+ Y + + T+ L +IG TLF +++D L Sbjct: 1 MIGRIVGTLIEKTPPELMVDVNGIGYEVSASMTTIYDLPQIGGQVTLFTHLLVKEDSHTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ +R F +L V G+G ++A+ +LS +++ EL+ ++ + + +IPG+ K Sbjct: 61 YGFIDKNERALFRVLIKVNGIGPKMALAILSSMSSEELITNVQESDVTALTRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K + A +AL++LGY +A A Sbjct: 121 AERLIIELRDKLGQ-----AAKTDLFSAPAVLRQVQADPRQEAEAALISLGYKPQEAAKA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + V + A+ +I+ AL+ + Sbjct: 176 IAGVP---VDAANSEDVIKAALKGM 197 >gi|113460415|ref|YP_718477.1| Holliday junction DNA helicase RuvA [Haemophilus somnus 129PT] gi|170717663|ref|YP_001783495.1| Holliday junction DNA helicase RuvA [Haemophilus somnus 2336] gi|123131938|sp|Q0I1M4|RUVA_HAES1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189045755|sp|B0UVK3|RUVA_HAES2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|112822458|gb|ABI24547.1| Holliday junction DNA helicase subunit RuvA [Haemophilus somnus 129PT] gi|168825792|gb|ACA31163.1| Holliday junction DNA helicase RuvA [Haemophilus somnus 2336] Length = 204 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 67/205 (32%), Positives = 101/205 (49%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L+DVQGV Y + P+ + L ++G TLF +R+D L Sbjct: 1 MIGRVTGILVEKQAPEILLDVQGVGYELLLPMTSFYNLPEVGQETTLFTHFVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ E V +I + + +IPG+ K Sbjct: 61 FGFSHKQDRSLFRELIKTNGVGPKLALAILSAMSVNEFVYAIEQEELSKLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKGK L + S + + A+SAL+ LGY +A Sbjct: 121 AERLLVELKGKFKGLQQTDFFIKSSHLPGIKCSKLDQSLQLDEAVSALIALGYKPIEAEK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V VLK + Q+IR AL+A Sbjct: 181 MVKKVLKAD---LTSEQLIREALKA 202 >gi|161870798|ref|YP_001599971.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis 053442] gi|189045759|sp|A9M3B7|RUVA_NEIM0 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|161596351|gb|ABX74011.1| Holliday junction DNA helicase [Neisseria meningitidis 053442] gi|308388484|gb|ADO30804.1| Holliday junction DNA helicase [Neisseria meningitidis alpha710] gi|325130991|gb|EGC53718.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis OX99.30304] gi|325131591|gb|EGC54298.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis M6190] gi|325143104|gb|EGC65451.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis 961-5945] gi|325143174|gb|EGC65520.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis 961-5945] gi|325197549|gb|ADY93005.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis G2136] Length = 194 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL +++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK ++ V + +S L+ LGY + +A A Sbjct: 121 AERMVLELRGKLVA---------HTVTDGLFAAAPAADETEDIVSTLLALGYSEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V D + +RLAL+ + Sbjct: 172 VKGV----PEGTDVGEGVRLALKNL 192 >gi|309379780|emb|CBX21556.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 194 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 103/205 (50%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFCNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +RQ F L V G+GA+ A+G+LS +TA EL ++ ++ K ++ PGI K Sbjct: 61 FGFATNEERQTFRQLIKVSGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK ++ V + +S L+ LGY + +A A Sbjct: 121 AERMVLELRGKLVA---------HTVTDGLFAAAPAADETEDIVSTLLALGYSEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V AD + +RLAL+ + Sbjct: 172 VKGV----PKGADVGEGVRLALKNL 192 >gi|77163677|ref|YP_342202.1| DNA recombination protein, RuvA [Nitrosococcus oceani ATCC 19707] gi|254435109|ref|ZP_05048616.1| Holliday junction DNA helicase RuvA [Nitrosococcus oceani AFC27] gi|90135436|sp|Q3JES4|RUVA_NITOC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|76881991|gb|ABA56672.1| Holliday junction DNA helicase subunit RuvA [Nitrosococcus oceani ATCC 19707] gi|207088220|gb|EDZ65492.1| Holliday junction DNA helicase RuvA [Nitrosococcus oceani AFC27] Length = 199 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 102/205 (49%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++L+DVQGV Y + P+ T L +G L+ +R D L Sbjct: 1 MIGRLRGILLEKRAPFLLLDVQGVGYELEAPLSTFYVLPAMGAEVILYTHLVVRDDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 + F S+ +R F L V GVGA++ +G+LS I A + ++ + ++PG+ K Sbjct: 61 YAFASEKERGLFRSLIRVNGVGAKLGLGILSGIEAESFTRCVQEGDTVSLTRLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ + + + M + S P A+SALV LGY ++A+ A Sbjct: 121 AERLIVEMRDRLLDMPESGVAGM----RPDRVDGSAPGTVAEAVSALVALGYKPNEASRA 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + + +IIR AL+ + Sbjct: 177 VRRL---DTEALTTEEIIRQALQRM 198 >gi|78221965|ref|YP_383712.1| Holliday junction DNA helicase RuvA [Geobacter metallireducens GS-15] gi|123729330|sp|Q39XN7|RUVA_GEOMG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|78193220|gb|ABB30987.1| Holliday junction DNA helicase subunit RuvA [Geobacter metallireducens GS-15] Length = 199 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 107/205 (52%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + D ++IDV GV Y + P T L G +L + TH+++D I L Sbjct: 1 MIARLTGMLAHKSPDAIIIDVNGVGYRVQIPFSTYYELPDEGKTVSLSIYTHVKEDAISL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++F +L SV G+G ++A +LS I EL +I+ N ++ IPGI K Sbjct: 61 FGFRTVAEKEFFQVLISVSGIGPKMARDILSNIQPDELAGAILQGNLVRLSSIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + D++ KE A + P A + SALVNLGY + Sbjct: 121 AERLVLELKEKVRKM------DVAPSTKEAAPSEAPPEVADDVASALVNLGYKEAVVRKV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + + A ++R AL+ + Sbjct: 175 LAEMAIE--SGASTEAVLRQALKIL 197 >gi|304413290|ref|ZP_07394763.1| DNA-binding subunit of Holliday junction resolvasome [Candidatus Regiella insecticola LSR1] gi|304284133|gb|EFL92526.1| DNA-binding subunit of Holliday junction resolvasome [Candidatus Regiella insecticola LSR1] Length = 202 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 104/204 (50%), Gaps = 4/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y I PI L + G +F + +R++ L Sbjct: 1 MIGRLRGIILEKQPPQVLLETHGVGYEIQLPISCFYQLPEAGQEAIIFTQFVVREEAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V ++ + + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAPQFVHAVEQEEISTLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L+ + + + + + ++ + A A+SAL+ LGY +A+ Sbjct: 121 AERLVVEMKDRIKGLNGDLFTNSTAAPLSASLLTTVNNEA-EAVSALITLGYKPQEASRL 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + + E D +IR ALRA Sbjct: 180 INKIATAE---MDCETLIREALRA 200 >gi|75676909|ref|YP_319330.1| Holliday junction DNA helicase motor protein [Nitrobacter winogradskyi Nb-255] gi|90135442|sp|Q3SP13|RUVA_NITWN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|74421779|gb|ABA05978.1| Holliday junction DNA helicase subunit RuvA [Nitrobacter winogradskyi Nb-255] Length = 205 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 94/206 (45%), Positives = 132/206 (64%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ EDYV++DV GV Y ++C RTL L G L +ET++R+DQI+L Sbjct: 1 MIGKLKGVIDSYGEDYVILDVGGVGYQVHCASRTLQALPSPGQAAVLSIETYVREDQIKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +D +R+WF LLQ+VQGVGARVA+ VL ++ +L +I L++ +A+ PGI K+ Sbjct: 61 FGFRTDHEREWFRLLQTVQGVGARVALAVLGTLSPADLASAIALRDKASVARTPGIGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA S ++V + P +AISALVNLGYGQ QAT A Sbjct: 121 AERIVTELKDKAPSFANVDPTVVHLAGDLDDQRAPRP--VRDAISALVNLGYGQPQATAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + A+ +Q+IRL L+ +S Sbjct: 179 IAAASRGAGENAETAQLIRLGLKELS 204 >gi|154246996|ref|YP_001417954.1| Holliday junction DNA helicase RuvA [Xanthobacter autotrophicus Py2] gi|229560140|sp|A7IJV4|RUVA_XANP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|154161081|gb|ABS68297.1| Holliday junction DNA helicase RuvA [Xanthobacter autotrophicus Py2] Length = 205 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 87/206 (42%), Positives = 132/206 (64%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ L ED+V++DV GV Y+++C RTLS L + G+ LF+ETH+R+DQIRL Sbjct: 1 MIGKLKGVVDTLEEDHVILDVHGVGYLVHCSGRTLSALPRAGEAAALFIETHVREDQIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R WF LLQ +QG+G + A+ VLS ++A+EL ++I L + +A+ PG+ ++ Sbjct: 61 FGFSSAAERDWFRLLQGIQGIGTKTALAVLSTLSASELTQAIALGDKTTVARAPGVGPRV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+TELK K S + ++ + A +A+SALVNLGYG QA A Sbjct: 121 ATRIITELKDKMPGFS--ASEPLAAQLGGGGVASAQGGAAADAVSALVNLGYGVPQANAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + L+ A +IRL L+ ++ Sbjct: 179 IAAALRGAGEGAKTEVLIRLGLKELA 204 >gi|82703833|ref|YP_413399.1| Holliday junction DNA helicase RuvA [Nitrosospira multiformis ATCC 25196] gi|123740585|sp|Q2Y5G4|RUVA_NITMU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|82411898|gb|ABB76007.1| Holliday junction DNA helicase subunit RuvA [Nitrosospira multiformis ATCC 25196] Length = 197 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 103/206 (50%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + + VL+DVQGV Y I P+ T L +G TL +R+D L Sbjct: 1 MIGRISGLLLEKFPPLVLVDVQGVGYEIDVPMSTFYNLPAVGTQITLHTHFVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +RQ F L + GVGAR A+ +LS ++ +L +++ Q+ + +IPGI K Sbjct: 61 FGFATEGERQAFRQLVKISGVGARTALALLSGLSVADLHQTVSNQDPARLIRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K S + A + + ++AL++LGY +A A Sbjct: 121 AERLLLELRDKLDLGVSAIPG--------AAGARRPSTMGSDVLNALLSLGYNDREANWA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + S IR AL+ +S Sbjct: 173 VSQLSVDL----SVSDGIRQALKFLS 194 >gi|224827243|ref|ZP_03700337.1| Holliday junction DNA helicase RuvA [Lutiella nitroferrum 2002] gi|224600532|gb|EEG06721.1| Holliday junction DNA helicase RuvA [Lutiella nitroferrum 2002] Length = 197 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +++DV GV Y + P+ T L +G+ TL+ +R+D L Sbjct: 1 MIGRLTGQLIEKLPPQIVVDVGGVGYEVDVPMSTFYLLPALGEKTTLYTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R+ F L V G+GA++A+ +LS ++A EL ++ ++ K ++ +PGI K Sbjct: 61 FGFASKGERETFRQLIKVGGIGAKIALAILSGLSADELALAVASEDLKRLSSVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK + + P + ++AL+ LGY +A A Sbjct: 121 AERLVLELRGKL-------ATGGAVTTPGGLPFAATPDDKSDIVNALLALGYNDKEAAAA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 K S +RLAL+++ Sbjct: 174 ----TKCLPPEVTVSDGVRLALKSL 194 >gi|325203380|gb|ADY98833.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis M01-240355] Length = 194 Score = 172 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL ++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK ++ V + +S L+ LGY + +A A Sbjct: 121 AERMVLELRGKLVA---------HTVTDGLFAAAPAADETEDIVSTLLALGYSEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V D + +RLAL+ + Sbjct: 172 VKGV----PKGTDVGEGVRLALKNL 192 >gi|39996178|ref|NP_952129.1| Holliday junction DNA helicase RuvA [Geobacter sulfurreducens PCA] gi|81702836|sp|Q74E87|RUVA_GEOSL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|39982943|gb|AAR34402.1| Holliday junction DNA helicase RuvA [Geobacter sulfurreducens PCA] gi|298505192|gb|ADI83915.1| Holliday junction DNA helicase RuvA [Geobacter sulfurreducens KN400] Length = 199 Score = 172 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 104/205 (50%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + D ++IDV GV Y + P T L + G +L + TH+++D I L Sbjct: 1 MIALLTGRLAHKSPDAIIIDVNGVGYRVQIPFSTYYELPEEGKTVSLSIHTHVKEDSISL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++F LL SV G+G ++A +LS I EL +I+ N ++ IPGI K Sbjct: 61 FGFRTLAEKEFFQLLISVSGIGPKMARDILSNIQPEELAAAIVQGNLVRLSSIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + D++ +E + A + SALVNLGY + Sbjct: 121 AERLVLELKEKVRKM------DVAPSAQEAPSSEAPAEVADDVASALVNLGYKEAVVRKV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + A ++R AL+ + Sbjct: 175 LAEMSIE--PDASTEAVLRQALKVL 197 >gi|260060653|ref|YP_003193733.1| Holliday junction DNA helicase RuvA [Robiginitalea biformata HTCC2501] gi|88784783|gb|EAR15952.1| Holliday junction DNA helicase motor protein [Robiginitalea biformata HTCC2501] Length = 193 Score = 172 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 101/205 (49%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + +++I+ GV Y + + T S L + ++ +R+D L Sbjct: 1 MIEHLTGRLIEKHPTHLVIECAGVGYFVNISLNTFSALPDE-EQLRIYTHLQVREDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R+ F LL SV GVGA A +LS +T +L E+I + I + GI K Sbjct: 60 FGFYSVAEREAFRLLISVSGVGASTARTMLSSMTPAQLREAIASGDVPAIQAVKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +L+ K + + + + + + A+SAL LGY + Q+ A Sbjct: 120 AQRVILDLRDKILKIYDLDEVSL----------KPDNTNKEEALSALEVLGYSRKQSEKA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +VL+++ + A II+ L+ + Sbjct: 170 VDTVLRQDPS-ASVEGIIKQTLKNL 193 >gi|163751784|ref|ZP_02159001.1| Holliday junction DNA helicase RuvA [Shewanella benthica KT99] gi|161328348|gb|EDP99508.1| Holliday junction DNA helicase RuvA [Shewanella benthica KT99] Length = 205 Score = 172 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 51/207 (24%), Positives = 104/207 (50%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI+V G+ Y + P+ + L ++ ++ +R+D L Sbjct: 1 MIGRLRGVLLEKQAPEILIEVSGLGYEVQMPLTSFYELPELNQEAIVYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ +R F LL GVG ++A+ +LS +T+ E V + + + ++PG+ K Sbjct: 61 YGFMTKQERALFRLLIKTNGVGPKLALTILSGMTSVEFVACVERDDIATLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQD--MSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E++ K SL + + + +AI+AL+ LGY QA+ Sbjct: 121 AERLLVEMRDKLKSLMEASAGSEREFMLKSNYRPAKIVNTAEDDAIAALLALGYKPAQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 +V + K + ++I+ +L+++ Sbjct: 181 KSVSAAYK---DGMSSQELIKASLKSM 204 >gi|73540190|ref|YP_294710.1| Holliday junction DNA helicase motor protein [Ralstonia eutropha JMP134] gi|90135661|sp|Q475R7|RUVA_RALEJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|72117603|gb|AAZ59866.1| Holliday junction DNA helicase subunit RuvA [Ralstonia eutropha JMP134] Length = 193 Score = 172 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 68/206 (33%), Positives = 105/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L G TL + +R+D L Sbjct: 1 MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGQPVTLLTQLIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L + G+GAR+A+ VLS ++ +EL ++I LQ + + ++PGI K Sbjct: 61 YGFGSAAERNTFRELIKITGIGARMALAVLSGMSVSELAQAITLQEAGRLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+M ELKGK + A++ ++AL+ LGY + +A TA Sbjct: 121 AERLMLELKGKL-----------GAELGHAPGAAPVHDSAVDILNALLALGYSEKEAATA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + V S I+LAL+A+S Sbjct: 170 IKQV----PAGTGVSDGIKLALKALS 191 >gi|240017426|ref|ZP_04723966.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae FA6140] gi|240081568|ref|ZP_04726111.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae FA19] gi|240113847|ref|ZP_04728337.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae MS11] gi|240126556|ref|ZP_04739442.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae SK-92-679] gi|240129018|ref|ZP_04741679.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae SK-93-1035] gi|268597664|ref|ZP_06131831.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae FA19] gi|268599915|ref|ZP_06134082.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae MS11] gi|268685136|ref|ZP_06151998.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae SK-92-679] gi|268687398|ref|ZP_06154260.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae SK-93-1035] gi|268551452|gb|EEZ46471.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae FA19] gi|268584046|gb|EEZ48722.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae MS11] gi|268625420|gb|EEZ57820.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae SK-92-679] gi|268627682|gb|EEZ60082.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae SK-93-1035] Length = 194 Score = 172 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL ++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK ++ V + +S L+ LGY + +A A Sbjct: 121 AERMVLELRGKLVA---------HTVTDRLFAASPAADETEDIVSTLLALGYNEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V D + +RLAL+ + Sbjct: 172 VKGV----PKGTDVGEGVRLALKNL 192 >gi|295132466|ref|YP_003583142.1| Holliday junction ATP-dependent DNA helicase RuvA [Zunongwangia profunda SM-A87] gi|294980481|gb|ADF50946.1| Holliday junction ATP-dependent DNA helicase RuvA [Zunongwangia profunda SM-A87] Length = 193 Score = 172 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 98/205 (47%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + YV++D GV Y ++ + T S + + +F +++D L Sbjct: 1 MIHHLKGKLVEKNPTYVVVDCNGVGYFVHISLNTFSKIKDE-EQIAIFTHLQVKEDSHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R+ F LL SV G+GA A +LS + T++ ++I + I I GI K Sbjct: 60 FGFQEKSEREIFRLLISVSGIGASTARTMLSSLDPTQIRDAIASGDVATIQSIKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + + + + + + A+SAL LGY + QA Sbjct: 120 AQRVILDLKDKIVKIFGIDE----------VFVEQSNTIKEEALSALETLGYARKQADKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++K+ +I+LAL+ + Sbjct: 170 LNKLIKEI-EDPTVETLIKLALKNL 193 >gi|95931133|ref|ZP_01313858.1| Holliday junction DNA helicase RuvA [Desulfuromonas acetoxidans DSM 684] gi|95132823|gb|EAT14497.1| Holliday junction DNA helicase RuvA [Desulfuromonas acetoxidans DSM 684] Length = 199 Score = 172 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 115/206 (55%), Gaps = 8/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G I D V++DV GV Y + P+ + L + TL + TH+R+D ++L Sbjct: 1 MIARLCGTIVSKTIDQVIVDVNGVGYQVSVPLSSFYQL-EENQTATLQIYTHVREDALQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S ++Q F+LL S+ G+G +VA+ +LS + L + ++ +++K +A +PGI K Sbjct: 60 FGFQSLDEKQMFILLLSISGIGPKVALNILSHMDCHALRDCLLQEDAKRLATLPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K L Q + H + +A+SAL+NLGY + QA+ A Sbjct: 120 ADRLILELREKVRKLYPEQPQTTQAAPEGVLH----NNHHDDALSALINLGYKEKQASAA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + ++ + ++++ AL+ +S Sbjct: 176 LSRLTRE---FSSMEEMLKAALQQLS 198 >gi|182677007|ref|YP_001831153.1| Holliday junction DNA helicase RuvA [Beijerinckia indica subsp. indica ATCC 9039] gi|229560003|sp|B2IAW4|RUVA_BEII9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|182632890|gb|ACB93664.1| Holliday junction DNA helicase RuvA [Beijerinckia indica subsp. indica ATCC 9039] Length = 205 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 88/206 (42%), Positives = 131/206 (63%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ ED+V++DVQGV YI++C RTL L K G L +E +R+D IRL Sbjct: 1 MIGKLTGLVDSQGEDHVILDVQGVGYIVFCSSRTLRLLPKPGASTALLIEMQVREDAIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S+++R WF LLQSVQGVGA+VA+ + ++ATEL ++I LQ+ + + PG+ K+ Sbjct: 61 FGFPSEVERDWFRLLQSVQGVGAKVALALQGLLSATELAQAIALQDKASLGRAPGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+R++TELK K +L V ++ + P A +AI+ALVNLGYG+ QA A Sbjct: 121 AARLITELKDKMPALGPV--DSLTAKLTIAEAEGTAPVAAQDAITALVNLGYGRPQAAAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + L+ A + +IR L+ ++ Sbjct: 179 VATSLEALGETAPLADLIRRGLKELA 204 >gi|271500732|ref|YP_003333757.1| Holliday junction DNA helicase RuvA [Dickeya dadantii Ech586] gi|270344287|gb|ACZ77052.1| Holliday junction DNA helicase RuvA [Dickeya dadantii Ech586] Length = 205 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 101/206 (49%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++V GV Y ++ P+ L +G +F +R+D L Sbjct: 1 MIGRLRGIIVEKQPPQVLLEVGGVGYEVHMPMTCFYELPDLGQEAVIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L V GVG ++A+ +LS ++A + V ++ Q + ++PG+ K Sbjct: 61 FGFNNKQERSLFRELIKVNGVGPKLALAILSGMSAQQFVSAVERQEINALVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA--HICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + L+ + S + A + A +ALV LGY +A Sbjct: 121 AERLVVEMKDRFKGLNGDLFNAASDIALPAATGNTTPETDPLAEAEAALVALGYKPQEAG 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 V V + AD +IR ALRA Sbjct: 181 RMVSKVSR---PGADCETLIRDALRA 203 >gi|121634135|ref|YP_974380.1| Holliday junction DNA helicase motor protein [Neisseria meningitidis FAM18] gi|166230574|sp|A1KRU4|RUVA_NEIMF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|120865841|emb|CAM09573.1| Holliday junction DNA helicase [Neisseria meningitidis FAM18] Length = 194 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL +++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK ++ V + + L+ LGY + +A A Sbjct: 121 AERMVLELRGKLVA---------HAVTDGLFAAAPAADETEDIVGTLLALGYSEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V D + +RLAL+ + Sbjct: 172 VKGV----PKGTDVGEGVRLALKNL 192 >gi|285808235|gb|ADC35769.1| Holliday junction DNA helicase RuvA [uncultured bacterium 293] Length = 198 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 100/206 (48%), Gaps = 9/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G I +IDV GV Y + P+ T LG GD TL V TH+R+D I L Sbjct: 1 MIAQLTGRIARKEPQEAVIDVGGVGYRVTIPVSTFYRLGVDGDTITLRVHTHLREDTIAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F L +V VG ++A+ +LS I EL++++ + + +IPG+ K Sbjct: 61 FGFATASEHDLFEKLITVANVGPKLAVNILSGIETDELIQALRGGDLARLTRIPGVGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + + +SALV+LGY + +A A Sbjct: 121 AERLVLELKDKMPK--------PGTAAAAPDAPPDGGAEREDVLSALVHLGYSRAEAERA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V ++ + ++R LR++S Sbjct: 173 VERATREGGSHR-FEDLLRQVLRSLS 197 >gi|119477229|ref|ZP_01617465.1| Holliday junction DNA helicase motor protein [marine gamma proteobacterium HTCC2143] gi|119449592|gb|EAW30830.1| Holliday junction DNA helicase motor protein [marine gamma proteobacterium HTCC2143] Length = 202 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + +L+DV GV Y I P+ T+ L ++G L +R+D L Sbjct: 1 MIGRITGVLLEKQAPELLVDVNGVGYEIQAPMTTIYQLPEVGQVVVLHTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L V GVG ++A+ +LS I E V + ++ + ++PG+ K Sbjct: 61 YGFAELQERRLFRALIKVNGVGPKLALTILSGIETDEFVRCVRDGDTLSLVRLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + D V+ S A SAL+ LGY +A Sbjct: 121 AERLLVEMKDRLKDWQIDSITDEFRVSGMGFS----NSITAEAESALIALGYKPQEAAK- 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 ++ Q+IR AL+ + Sbjct: 176 -AIAAANNDSMTSSEQLIRAALKNM 199 >gi|304389092|ref|ZP_07371136.1| crossover junction ATP-dependent DNA helicase RuvA [Neisseria meningitidis ATCC 13091] gi|304336965|gb|EFM03155.1| crossover junction ATP-dependent DNA helicase RuvA [Neisseria meningitidis ATCC 13091] Length = 194 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL +++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK ++ V + + L+ LGY + +A A Sbjct: 121 AERMVLELRGKLVA---------HTVTDGLFAAAPAADETEDIVGTLLALGYSEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V D + +RLAL+ + Sbjct: 172 VKGV----PKGTDVGEGVRLALKNL 192 >gi|299134170|ref|ZP_07027363.1| Holliday junction DNA helicase RuvA [Afipia sp. 1NLS2] gi|298590917|gb|EFI51119.1| Holliday junction DNA helicase RuvA [Afipia sp. 1NLS2] Length = 205 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 94/206 (45%), Positives = 136/206 (66%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ EDYV++DVQGV Y++ C RTL L G+ L +ET++R+DQIRL Sbjct: 1 MIGKLKGLIDSYGEDYVVLDVQGVGYLVSCSARTLQALPSPGEAAVLSIETYVREDQIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF SD++R+WF LLQ+VQGVGA+VA+ VLS + ++L +I L++ +A+ PG+ K+ Sbjct: 61 FGFRSDIEREWFRLLQTVQGVGAKVALAVLSTLPPSDLANAIALRDKAAVARTPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA + +SV + + P +AISALVNLGYGQ QA A Sbjct: 121 AERIVTELKDKAPAFASVDPAVVHLASAVDDDRAPGP--VRDAISALVNLGYGQPQAAAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + S + A+ +++IRL L+ ++ Sbjct: 179 IASASRDAGEGAETTKLIRLGLKELA 204 >gi|293390518|ref|ZP_06634852.1| holliday junction DNA helicase RuvA [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951052|gb|EFE01171.1| holliday junction DNA helicase RuvA [Aggregatibacter actinomycetemcomitans D7S-1] Length = 204 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 99/205 (48%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + +L+DVQG+ Y + P+ + L ++G LF +R+D L Sbjct: 1 MIGHLTGILMEKQPPEILLDVQGIGYELLLPMTSFYNLPEVGKQTRLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ E +I + + +IPGI K Sbjct: 61 FGFAQKADRTLFRELIKTNGVGPKLALAILSAMSVDEFAYAIEREELSRLVKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKGK + ++ + + I + + A++ALV LGY A Sbjct: 121 AERLLVELKGKFKEVKTNDFFVQADHLPRFSTEISATVEPSNEAVAALVALGYKPLDAEK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V V K E QIIR AL+A Sbjct: 181 MVKKVSKPE---LSSEQIIREALKA 202 >gi|148263482|ref|YP_001230188.1| Holliday junction DNA helicase RuvA [Geobacter uraniireducens Rf4] gi|146396982|gb|ABQ25615.1| Holliday junction DNA helicase subunit RuvA [Geobacter uraniireducens Rf4] Length = 199 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + D++++D+ GV Y + P T L G TL + TH+++D I L Sbjct: 1 MIALLAGKLAHKSPDFIILDIGGVGYRVQIPFSTYYALPDAGGVVTLNIYTHVKEDAINL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +++ F LL SV GVG ++ G+LS I A L +++I + ++ IPGI K Sbjct: 61 YGFRTMAEKEMFQLLISVSGVGPKLGNGILSNIEAENLSDALIRGDLARLSAIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K + + ++ + ISALVNLGY + A Sbjct: 121 AERLVLELREKVKKMGP------FSIREDAPPSPGRQDIRDDVISALVNLGYKEAVVQKA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ A I++ AL+ + Sbjct: 175 LEAI--DIPADASVESILKQALKKL 197 >gi|218768952|ref|YP_002343464.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis Z2491] gi|20455265|sp|Q9JSM5|RUVA_NEIMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|121052960|emb|CAM09314.1| Holliday junction DNA helicase [Neisseria meningitidis Z2491] gi|254671573|emb|CBA09225.1| holliday junction DNA helicase [Neisseria meningitidis alpha153] gi|319411250|emb|CBY91657.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis WUE 2594] Length = 194 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL +++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK ++ V + + L+ LGY + +A A Sbjct: 121 AERMVLELRGKLVA---------HAVTDGLFAAAPAADETEDIVGTLLALGYSEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V D + +RLAL+ + Sbjct: 172 VKGV----PEGTDVGEGVRLALKNL 192 >gi|59802051|ref|YP_208763.1| Holliday junction DNA helicase motor protein [Neisseria gonorrhoeae FA 1090] gi|194099623|ref|YP_002002754.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae NCCP11945] gi|239999822|ref|ZP_04719746.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae 35/02] gi|240014978|ref|ZP_04721891.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae DGI18] gi|240116581|ref|ZP_04730643.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae PID18] gi|240118805|ref|ZP_04732867.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae PID1] gi|240122047|ref|ZP_04735009.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae PID24-1] gi|240124344|ref|ZP_04737300.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae PID332] gi|254494604|ref|ZP_05107775.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae 1291] gi|260439658|ref|ZP_05793474.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae DGI2] gi|268595632|ref|ZP_06129799.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae 35/02] gi|268602250|ref|ZP_06136417.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae PID18] gi|268604516|ref|ZP_06138683.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae PID1] gi|268682971|ref|ZP_06149833.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae PID332] gi|291042899|ref|ZP_06568640.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae DGI2] gi|293398091|ref|ZP_06642296.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae F62] gi|75355491|sp|Q5F636|RUVA_NEIG1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560109|sp|B4RPG0|RUVA_NEIG2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|59718946|gb|AAW90351.1| putative Holliday junction DNA helicase [Neisseria gonorrhoeae FA 1090] gi|193934913|gb|ACF30737.1| Holliday junction DNA helicase motor protein [Neisseria gonorrhoeae NCCP11945] gi|226513644|gb|EEH62989.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae 1291] gi|268549021|gb|EEZ44439.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae 35/02] gi|268586381|gb|EEZ51057.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae PID18] gi|268588647|gb|EEZ53323.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae PID1] gi|268623255|gb|EEZ55655.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae PID332] gi|291013333|gb|EFE05299.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae DGI2] gi|291611354|gb|EFF40424.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae F62] gi|317165112|gb|ADV08653.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae TCDC-NG08107] Length = 194 Score = 171 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL ++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK ++ V + +S L+ LGY + +A A Sbjct: 121 AERMVLELRGKLVA---------HTVTDGLFAASPAADETEDIVSTLLALGYNEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V D + +RLAL+ + Sbjct: 172 VKGV----PKGTDVGEGVRLALKNL 192 >gi|190575569|ref|YP_001973414.1| Holliday junction DNA helicase RuvA [Stenotrophomonas maltophilia K279a] gi|254522833|ref|ZP_05134888.1| Holliday junction DNA helicase RuvA [Stenotrophomonas sp. SKA14] gi|229560132|sp|B2FRN6|RUVA_STRMK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|190013491|emb|CAQ47126.1| putative Holliday junction DNA helicase [Stenotrophomonas maltophilia K279a] gi|219720424|gb|EED38949.1| Holliday junction DNA helicase RuvA [Stenotrophomonas sp. SKA14] Length = 197 Score = 171 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 97/204 (47%), Gaps = 10/204 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV GV Y + P+ T L ++G TL+ ++D + L Sbjct: 1 MIGRLRGIVAYKAPPWLVVDVNGVGYELEAPMSTFYDLPELGREVTLYTHYSQKEDSVSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + +R+ F +Q V G+GA++A+ VLS +T E + + + +IPGI K Sbjct: 61 YGFLREGERRLFRDVQKVSGIGAKIALAVLSGVTVEEFARMVQAGDITALTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ +A + + +A AL LGY +A Sbjct: 121 AERMVLELRDRAAQFGAGGALPTGSG-------PAPADPLSDATVALQQLGYKPAEAARM 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + +A IR AL++ Sbjct: 174 ARDAFNEGDEVATV---IRKALQS 194 >gi|146338241|ref|YP_001203289.1| Holliday junction DNA helicase RuvA [Bradyrhizobium sp. ORS278] gi|166230522|sp|A4YMC6|RUVA_BRASO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|146191047|emb|CAL75052.1| Holliday junction DNA helicase ruvA [Bradyrhizobium sp. ORS278] Length = 205 Score = 171 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 89/206 (43%), Positives = 135/206 (65%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK++G I+ ED+V+IDV GV Y ++C RTL L G+ TL +ET++R+DQI+L Sbjct: 1 MIGKLRGLIDSYAEDFVIIDVGGVGYQVHCSARTLQALPSPGEAATLSIETYVREDQIKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF SD++R+WF LLQ+VQGVGA+VA+ VL + +L +I L++ +A+ PG+ K+ Sbjct: 61 FGFRSDVEREWFRLLQTVQGVGAKVALAVLGTLPPADLGNAIALRDKAAVARTPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA + ++V + + P +AISAL+NLGYGQ QA A Sbjct: 121 AERIVTELKDKAPAFANVDPGVVRLSGAIEESRAPQP--VADAISALINLGYGQPQAAAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + + A+ +Q+IRL L+ ++ Sbjct: 179 IAAASRAAGDKAETAQLIRLGLKELA 204 >gi|145590058|ref|YP_001156655.1| Holliday junction DNA helicase RuvA [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|189045760|sp|A4T027|RUVA_POLSQ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|145048464|gb|ABP35091.1| Holliday junction DNA helicase RuvA [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 193 Score = 171 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 105/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + ++ +L+D QGV Y I P+ TL L ++ TL +R+D +L Sbjct: 1 MIGRIQGTLVSVHPPRLLVDCQGVGYEIDVPMSTLYQLPEVNQKITLLTHFQVREDAQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++++R+ F L + GVG+R A+ VLS ++ EL ++I LQ + + Q+PGI K Sbjct: 61 FGFATEIEREAFRQLIKISGVGSRTALAVLSGMSVNELAQAIALQEAGRLTQVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ELKGK + + + AL++LGY + +A A Sbjct: 121 AERLCLELKGKLAPDLGITGGKPQAI-----------EATSEVLQALLSLGYSEKEALLA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + S IR+ L+ +S Sbjct: 170 LKQI----PPETSVSDGIRMGLKYLS 191 >gi|326335182|ref|ZP_08201379.1| crossover junction ATP-dependent DNA helicase RuvA [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692712|gb|EGD34654.1| crossover junction ATP-dependent DNA helicase RuvA [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 196 Score = 171 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 96/205 (46%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G++ YV+ID G+ Y + + T S L + L+ +++D L Sbjct: 1 MITQLQGHLVEKTPTYVIIDCNGIGYWVNISLNTFSQLSDS-EQIKLYTYLQIKEDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R+ F LL SV GVGA A +LS ++ +L +I+ + + I + GI K Sbjct: 60 FGFFEKFEREIFSLLISVSGVGANTARVMLSSLSPAQLQSAIVNNDVRTIQSVKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +L+ K + L S + + A+SAL LGY Q A Sbjct: 120 AQRIILDLREKMLKL--------SSEGNIAPTVSQQQHYKEEALSALEVLGYPQKIAENV 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +L ++I+ AL+ + Sbjct: 172 VNKILSHATGEVSVEELIKQALKQL 196 >gi|297539687|ref|YP_003675456.1| Holliday junction DNA helicase RuvA [Methylotenera sp. 301] gi|297259034|gb|ADI30879.1| Holliday junction DNA helicase RuvA [Methylotenera sp. 301] Length = 192 Score = 171 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 108/206 (52%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + VLID GV Y P+ T L IG+ + +R+D L Sbjct: 1 MIGRLNGILLEKTPPLVLIDCNGVGYECEVPMSTFYNLPAIGEKVVMLTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF SD +R F L V G+GA+ A+ +LS ++ +LV+++ +Q++ ++ ++PG+ K Sbjct: 61 YGFGSDQERATFRQLLKVNGIGAKSALSILSGLSIDDLVQAVAMQDTAMLTRVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + ++ S + + ++AL++LGY + +A A Sbjct: 121 AERLLLELKDKF-----------TVAGLSPSNSNQPKSASSDVLNALISLGYNEREALAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + A ++ I+LAL+++S Sbjct: 170 VKLL----PADATVAEGIKLALKSLS 191 >gi|261400495|ref|ZP_05986620.1| holliday junction DNA helicase RuvA [Neisseria lactamica ATCC 23970] gi|269209755|gb|EEZ76210.1| holliday junction DNA helicase RuvA [Neisseria lactamica ATCC 23970] Length = 194 Score = 171 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 102/205 (49%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFCNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL ++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK ++ V + +S L+ LGY + +A A Sbjct: 121 AERMVLELRGKLVA---------HTVTDGLFAAAPAADETEDIVSTLLALGYSEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V AD + +RLAL+ + Sbjct: 172 VKGV----PKGADVGEGVRLALKNL 192 >gi|87118957|ref|ZP_01074855.1| Holliday junction DNA helicase RuvA [Marinomonas sp. MED121] gi|86165348|gb|EAQ66615.1| Holliday junction DNA helicase RuvA [Marinomonas sp. MED121] Length = 199 Score = 171 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 104/205 (50%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +++DV GV Y + + T L IG+ TL+ +++D L Sbjct: 1 MIGRLVGYLVEKVPPELMLDVNGVGYELTASMTTFYELPAIGEKVTLYTHFQVKEDAQSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 + F +R F +L V GVG ++A+ VLS +++ EL+ ++ + + +IPG+ K Sbjct: 61 YAFKQKDERALFRILIKVNGVGPKMALSVLSSMSSDELIANVQDSDVTALTRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K L +QD+ + + + P A +ALV+LGY +A A Sbjct: 121 AERLIIELRDK---LGQAAKQDLFATPEVLRQVQADP--RQEAEAALVSLGYKPQEAAKA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + V + Q+I+ AL+ + Sbjct: 176 IAKVP---VSSDSSEQVIKSALKNM 197 >gi|226329884|ref|ZP_03805402.1| hypothetical protein PROPEN_03797 [Proteus penneri ATCC 35198] gi|225200679|gb|EEG83033.1| hypothetical protein PROPEN_03797 [Proteus penneri ATCC 35198] Length = 206 Score = 171 bits (433), Expect = 6e-41, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 99/207 (47%), Gaps = 6/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG+I+G I VLI+ GV Y I P+ L IG ++ + +R+D Sbjct: 1 MIGRIRGIILEKQPPVVLIEAGSGVGYEINMPMTCFYELPDIGQEAIIYTQFIVREDAQL 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +R F L V GVG ++A+ +LS ++A + V +I ++ + ++PG+ K Sbjct: 61 LYGFNQKQERALFRELIKVNGVGPKLALAILSGMSARQFVTAIENESISSLVKLPGVGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQ--DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ E+K + L+ + + D+ + A +AL+ LGY +A Sbjct: 121 TAERLVVEMKDRFKGLNGDLFENSDIELPESTPSKAPKAADIEAEASAALIALGYKPQEA 180 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRA 204 + V K D +IR ALRA Sbjct: 181 AKMISKVAK---LGTDSETLIREALRA 204 >gi|188580172|ref|YP_001923617.1| Holliday junction DNA helicase RuvA [Methylobacterium populi BJ001] gi|229560102|sp|B1Z924|RUVA_METPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|179343670|gb|ACB79082.1| Holliday junction DNA helicase RuvA [Methylobacterium populi BJ001] Length = 208 Score = 171 bits (433), Expect = 6e-41, Method: Composition-based stats. Identities = 88/209 (42%), Positives = 133/209 (63%), Gaps = 5/209 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ ED+V++DV GV Y+++C RTL L K G+ L +ETH+R+D IRL Sbjct: 1 MIGKLKGIVDSYGEDFVILDVNGVGYVVHCSARTLQRLPKPGEATDLAIETHVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF SD +R+WF LLQ+VQGVG RVA+GVLS + +L +I + +A+ PG+ ++ Sbjct: 61 YGFRSDAEREWFRLLQTVQGVGTRVALGVLSVLEPAQLATAIATGDKGAVARAPGVGPRL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+R++ ELK KA + + V ++ + P +AISALVNLGY Q QA+ A Sbjct: 121 AARLVAELKDKAPAFAPVDPALVALTGAVEDRTAPQP--VADAISALVNLGYPQVQASAA 178 Query: 181 VVSVLKKEKNIADDSQ---IIRLALRAIS 206 + + LK + A+ + +IRL LR ++ Sbjct: 179 IAAALKGLGDGAETVEAKTLIRLGLRELA 207 >gi|325128974|gb|EGC51825.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis N1568] Length = 194 Score = 171 bits (433), Expect = 6e-41, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKNPPQIIIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL +++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK ++ V + + L+ LGY + +A A Sbjct: 121 AERMVLELRGKLVA---------HAVTDGLFAAAPAADETEDIVGTLLALGYSEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V D + +RLAL+ + Sbjct: 172 VKGV----PKGTDVGEGVRLALKNL 192 >gi|313669264|ref|YP_004049548.1| Holliday junction DNA helicase [Neisseria lactamica ST-640] gi|313006726|emb|CBN88196.1| Holliday junction DNA helicase [Neisseria lactamica 020-06] Length = 194 Score = 171 bits (432), Expect = 7e-41, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFCNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL ++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK ++ V S + + L+ LGY + +A A Sbjct: 121 AERMVLELRGKLVA---------HTVTDGLFAAPSENDETNDIVGTLLALGYSEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V D + +RLAL+ + Sbjct: 172 VKGV----PKGTDVGEGVRLALKNL 192 >gi|197301661|ref|ZP_03166731.1| hypothetical protein RUMLAC_00387 [Ruminococcus lactaris ATCC 29176] gi|197299101|gb|EDY33631.1| hypothetical protein RUMLAC_00387 [Ruminococcus lactaris ATCC 29176] Length = 205 Score = 171 bits (432), Expect = 7e-41, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 99/207 (47%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + + E ++DV GV Y IY P + LS L +G + ++R+D ++L Sbjct: 1 MISYIRGELCDIEEQKAIVDVNGVGYGIYMPQQALSLLPPMGQQVKIHTYLNIREDAMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ D F LL V G+G + + +LS ++ EL +++ ++K I+ PGI K Sbjct: 61 FGFLTKEDLNVFRLLIGVNGIGPKAGLNILSCLSPDELRFAVLSGDAKAISATPGIGKKT 120 Query: 121 ASRIMTELKGKA--ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A +++ ELK K + + + + A+ AL LGYG ++ Sbjct: 121 AEKLILELKDKLNIEDMLEHAAHGGDSEDLASGTDTASNTMQAEAVQALTALGYGSAESL 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 AV + I++ AL+ + Sbjct: 181 RAVKK---SSPECSSVEDILKEALKFL 204 >gi|54294187|ref|YP_126602.1| holliday junction DNA helicase [Legionella pneumophila str. Lens] gi|54297206|ref|YP_123575.1| Holliday junction DNA helicase RuvA [Legionella pneumophila str. Paris] gi|148358830|ref|YP_001250037.1| Holliday junction DNA helicase RuvA [Legionella pneumophila str. Corby] gi|296106875|ref|YP_003618575.1| holliday junction DNA helicase RuvA [Legionella pneumophila 2300/99 Alcoy] gi|81368758|sp|Q5WX47|RUVA_LEGPL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|81370703|sp|Q5X5R9|RUVA_LEGPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230562|sp|A5IBE1|RUVA_LEGPC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|53750991|emb|CAH12402.1| holliday junction DNA helicase [Legionella pneumophila str. Paris] gi|53754019|emb|CAH15490.1| holliday junction DNA helicase [Legionella pneumophila str. Lens] gi|148280603|gb|ABQ54691.1| Holliday junction DNA helicase RuvA [Legionella pneumophila str. Corby] gi|295648776|gb|ADG24623.1| holliday junction DNA helicase RuvA [Legionella pneumophila 2300/99 Alcoy] gi|307610000|emb|CBW99532.1| holliday junction DNA helicase [Legionella pneumophila 130b] Length = 199 Score = 171 bits (432), Expect = 7e-41, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 93/207 (44%), Gaps = 11/207 (5%) Query: 1 MIGKIKGNIEGL-YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG + G I +++DV GV Y + + T + L + T +R+D + Sbjct: 1 MIGWLHGQIIDKHQPGKLVLDVNGVGYDVETSLNTFFQIENGNQPIGLHIHTIVREDALL 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL +R F L V GVG ++AM VLS I+ E ++ I +N+ ++ ++PGI K Sbjct: 61 LYGFLDKEERSLFRSLIKVNGVGPKLAMTVLSSISPKEFIQCIHQENAALLTKLPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E++ V AISAL LGY +A Sbjct: 121 TAERLVVEMRDSIKQFDGSVSDTF-------QKQAGSTHSQQEAISALEALGYKPQEAWK 173 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 V + + Q+IR AL+ +S Sbjct: 174 VVNKI---DNGNKSCEQLIREALQILS 197 >gi|226324735|ref|ZP_03800253.1| hypothetical protein COPCOM_02521 [Coprococcus comes ATCC 27758] gi|225207183|gb|EEG89537.1| hypothetical protein COPCOM_02521 [Coprococcus comes ATCC 27758] Length = 203 Score = 171 bits (432), Expect = 7e-41, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 104/205 (50%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + L ED V++DV GV Y I+ + + L +G + ++++D ++L Sbjct: 1 MISYIRGELVALEEDKVIVDVGGVGYGIFMSGQAMGQLPPVGSKVKIHTYLNVKEDAMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ F LL V G+G + +G+L+++T EL +++ ++ K I+ PGI K Sbjct: 61 YGFLNRDALSVFKLLIGVSGIGPKGGLGILAQLTPDELRFAVMSKDIKAISTAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK K + V+ + N + +A+ AL LGYG +A A Sbjct: 121 AEKLIVELKDKL-KIEDVLDHQVEAANGADEDTVNAQGLQADAVQALTALGYGSTEALQA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V + +++ AL+ + Sbjct: 180 VRKV--EMDESTTVEDLLKGALKYL 202 >gi|257095744|ref|YP_003169385.1| Holliday junction DNA helicase RuvA [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048268|gb|ACV37456.1| Holliday junction DNA helicase RuvA [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 191 Score = 171 bits (432), Expect = 7e-41, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 100/206 (48%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + V++DV G+ Y + P+ T L G+ +L +R+D L Sbjct: 1 MIGRLSGILLEKNPPQVVLDVHGIGYELDVPMSTFYNLPANGEQVSLLTHFVVREDGQFL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +R F L + GVGAR+A+ VLS ++ ++L + + Q + ++PGI K Sbjct: 61 YGFASEPERFAFRQLLKISGVGARLALSVLSGLSVSDLAQVVARQEVGRLTKVPGIGTKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + A I + ++AL+ LGY +A A Sbjct: 121 AERLLLELKGKL-------------ADALPASIAPADGARSDILNALLALGYNDREAAAA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + S IR AL+ +S Sbjct: 168 MKLL----PDETTTSDGIRQALKLLS 189 >gi|163753887|ref|ZP_02161010.1| Holliday junction DNA helicase [Kordia algicida OT-1] gi|161326101|gb|EDP97427.1| Holliday junction DNA helicase [Kordia algicida OT-1] Length = 193 Score = 171 bits (432), Expect = 7e-41, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 97/205 (47%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + V+I+ GV Y I + T S + + LF H+R+D L Sbjct: 1 MITHIQGKLVEKNPTDVVIECNGVGYFINISLTTYSQIPNQ-ENIKLFTHLHVREDAQTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F LL SV G+G A +LS +T+ ++ E+I + I + GI K Sbjct: 60 YGFFQKAERAVFRLLISVSGIGTSTARTMLSSLTSEQICEAIGSGDVPTIQGVKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + L + + MS + +SAL LGY + Q+ Sbjct: 120 AQRVIIELKDKVLKLYDLDEVSMS----------QNNTNKEETLSALEVLGYTRKQSERV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++K+ Q+I++AL+ + Sbjct: 170 LDKIIKEMPAG-SVEQLIKMALKNL 193 >gi|299533018|ref|ZP_07046405.1| Holliday junction DNA helicase RuvA [Comamonas testosteroni S44] gi|298719242|gb|EFI60212.1| Holliday junction DNA helicase RuvA [Comamonas testosteroni S44] Length = 191 Score = 171 bits (432), Expect = 8e-41, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 99/205 (48%), Gaps = 16/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G + VL+D GV Y + P+ T L G L +R+D L Sbjct: 1 MIGKLTGTLLEKNPPEVLVDCAGVGYEVQVPMSTFYNLPANGAKVALLTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +RQ F L + G+G R+A+ VLS ++ +L +++ Q + + ++PGI K Sbjct: 61 FGFATARERQTFRELIKITGIGPRMALAVLSGMSIDDLADAVSQQQAGRLVKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + + + + + + AL+ LGY +A+ A Sbjct: 121 AERLLLELKGKI------------GADTGAQSLFANNNDQNDILQALMALGYSDKEASAA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + S+ I+LAL+A+ Sbjct: 169 LKKL----PPDVGVSEGIKLALKAL 189 >gi|251793066|ref|YP_003007792.1| Holliday junction DNA helicase RuvA [Aggregatibacter aphrophilus NJ8700] gi|247534459|gb|ACS97705.1| holliday junction DNA helicase RuvA [Aggregatibacter aphrophilus NJ8700] Length = 204 Score = 171 bits (432), Expect = 8e-41, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 98/205 (47%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + +L+DVQGV Y + P+ + L ++G +LF +R+D L Sbjct: 1 MIGHLTGILMEKQPPEILLDVQGVGYELLLPMTSFYNLPEVGKQTSLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ E +I + + +IPGI K Sbjct: 61 FGFSQKTDRTLFRELIKTNGVGPKLALAILSAMSVDEFAYAIEREELSRLVKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSS-VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKGK + + + A + + A++AL+ LGY A Sbjct: 121 AERLLVELKGKFKEVKTHDFFVQGDHLPSVNAETVATIEPSNEAVAALIALGYKPLDAEK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V V K E Q+IR AL+A Sbjct: 181 MVKKVSKPE---LSSEQLIREALKA 202 >gi|71279553|ref|YP_268842.1| Holliday junction DNA helicase RuvA [Colwellia psychrerythraea 34H] gi|90134812|sp|Q483C5|RUVA_COLP3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|71145293|gb|AAZ25766.1| Holliday junction DNA helicase RuvA [Colwellia psychrerythraea 34H] Length = 211 Score = 171 bits (432), Expect = 8e-41, Method: Composition-based stats. Identities = 58/213 (27%), Positives = 107/213 (50%), Gaps = 11/213 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI+ GV Y + P+ ++ L ++ T++ +R+D L Sbjct: 1 MIGRLRGMLVEKNSPEILIECAGVGYEVTMPMTSIYALPELEQQATIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++R+ F LL V GVG ++A+ +LS ++A + V + + I +IPG+ K Sbjct: 61 YGFANKVERKLFRLLIKVNGVGPKLALAILSNMSADQFVSCVRHDDISAIVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM--------PSFAINAISALVNLGY 172 A R++ E++ + + +S + + +AI+AL++LGY Sbjct: 121 AERLLIEMRDRLKDWQAQQIHLVSDDGVIPEQLSAELSQETTFVNDNKGDAINALLSLGY 180 Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 Q QA AV SV + IIR AL+++ Sbjct: 181 KQVQADKAVKSVYNR---GMSSENIIRDALKSM 210 >gi|328542537|ref|YP_004302646.1| Holliday junction ATP-dependent DNA helicase ruvA [polymorphum gilvum SL003B-26A1] gi|326412283|gb|ADZ69346.1| Holliday junction ATP-dependent DNA helicase ruvA [Polymorphum gilvum SL003B-26A1] Length = 205 Score = 171 bits (432), Expect = 8e-41, Method: Composition-based stats. Identities = 84/206 (40%), Positives = 125/206 (60%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ ED+V++DV GV Y ++CP R L L + G+ LF+ET +R+D IRL Sbjct: 1 MIGKLKGIVDSYGEDHVVLDVHGVGYQVHCPSRVLQGLPRTGEAAVLFIETLVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+WF LL +VQGVGA+VA+ VL + A E+ +I L + I++ PG+ ++ Sbjct: 61 YGFAQEAEREWFRLLMTVQGVGAKVALAVLGVLKAGEIANAIALGDKATISRAPGVGKRV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK KA +S+ ++ + + P A+SAL NLGY Q QA+ A Sbjct: 121 AERILAELKDKAPGYASIDADTLAVAQAVGDDVAARP--VAEAVSALTNLGYAQPQASAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V LK A +IRL LR ++ Sbjct: 179 VARALKAAGEAATTETLIRLGLRELA 204 >gi|261868502|ref|YP_003256424.1| Holliday junction DNA helicase RuvA [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413834|gb|ACX83205.1| holliday junction DNA helicase RuvA [Aggregatibacter actinomycetemcomitans D11S-1] Length = 204 Score = 171 bits (432), Expect = 8e-41, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 99/205 (48%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + +L+DVQG+ Y + P+ + L ++G LF +R+D L Sbjct: 1 MIGHLTGILMEKQPPEILLDVQGIGYELLLPMTSFYNLPEVGKQTCLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ E +I + + +IPGI K Sbjct: 61 FGFAQKADRTLFRELIKTNGVGPKLALAILSAMSVDEFAYAIEREELSRLVKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKGK + ++ + + I + + A++ALV LGY A Sbjct: 121 AERLLVELKGKFKEVKTNDFFVQADHLPRFSTEISATVEPSNEAVAALVALGYKPLDAEK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V V K E QIIR AL+A Sbjct: 181 MVKKVSKPE---LSSEQIIREALKA 202 >gi|27376647|ref|NP_768176.1| Holliday junction DNA helicase RuvA [Bradyrhizobium japonicum USDA 110] gi|44888480|sp|Q89U81|RUVA_BRAJA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|27349788|dbj|BAC46801.1| holliday junction DNA helicase [Bradyrhizobium japonicum USDA 110] Length = 205 Score = 171 bits (432), Expect = 8e-41, Method: Composition-based stats. Identities = 89/206 (43%), Positives = 132/206 (64%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ ED+V++DV GV Y ++C RTL L G+ L +ET++R+DQI+L Sbjct: 1 MIGKLKGLIDSYGEDFVILDVGGVGYQVHCSTRTLQHLPSPGEAAVLSIETYVREDQIKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +D +R+WF LLQ+VQGVGA+VA+ VL + ++L +I L++ +A+ PG+ K+ Sbjct: 61 FGFRTDQEREWFRLLQTVQGVGAKVALAVLGTLAPSDLANAIALRDKAAVARTPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA + ++V + P +AISALVNLGYGQ QA A Sbjct: 121 AERIVTELKDKAPAFANVDPAVVHLAGAVDDQRAPRP--VADAISALVNLGYGQPQAAAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + S + A+ +Q+IRL L+ ++ Sbjct: 179 IASASRSAGEGAETAQLIRLGLKELA 204 >gi|213963573|ref|ZP_03391826.1| holliday junction DNA helicase RuvA [Capnocytophaga sputigena Capno] gi|213953853|gb|EEB65182.1| holliday junction DNA helicase RuvA [Capnocytophaga sputigena Capno] Length = 194 Score = 170 bits (431), Expect = 9e-41, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + +V+ID GV Y + + T S L + G+ L+ +++D L Sbjct: 1 MITQLQGKLIEKNPTHVVIDCHGVGYFVNISLNTYSALPE-GEAIKLYTYLQIKEDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R+ F+LL SV GVGA A +LS +TA + +II + I + GI K Sbjct: 60 YGFLTKAEREVFVLLLSVSGVGASTARTMLSSLTAAHVRSAIINGDVATIQAVKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + L + ++ +N A++AL LG+ + QA Sbjct: 120 AQRVVLDLKDKMLKLQDFEEVSINTLNTN----------KEEALAALEVLGFVRKQAEKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +++K +II+ AL+ + Sbjct: 170 VDTIVKLNNEELSVEEIIKQALKRL 194 >gi|294054968|ref|YP_003548626.1| Holliday junction DNA helicase RuvA [Coraliomargarita akajimensis DSM 45221] gi|293614301|gb|ADE54456.1| Holliday junction DNA helicase RuvA [Coraliomargarita akajimensis DSM 45221] Length = 199 Score = 170 bits (431), Expect = 9e-41, Method: Composition-based stats. Identities = 59/204 (28%), Positives = 102/204 (50%), Gaps = 6/204 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++KG ++ V++DV+GV Y ++ P+ T + +G+ C LF+ + R+D L Sbjct: 1 MIARLKGTVDESTPLLVVLDVKGVGYEVHIPVTTAEQIPAVGETCNLFIHSVYREDSATL 60 Query: 61 FGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GF S DR +F LL V G+G ++ + +LSR++ L +I + ++++ PGI K Sbjct: 61 YGFASREDRDFFRLLVEKVSGIGPKIGISILSRMSVNVLQAAIASSDVALLSKCPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELK K Q S + + S +A+ +L LGY A Sbjct: 121 TAERLVIELKDKV-----YTQAPSSNTSSKHNANPDTSSAFQDAVGSLTTLGYKNADADK 175 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 + ++ A +IR AL+ Sbjct: 176 LIRKAAQRIGTDASVEDLIREALK 199 >gi|242239574|ref|YP_002987755.1| Holliday junction DNA helicase RuvA [Dickeya dadantii Ech703] gi|242131631|gb|ACS85933.1| Holliday junction DNA helicase RuvA [Dickeya dadantii Ech703] Length = 204 Score = 170 bits (431), Expect = 9e-41, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLI+ GV Y ++ P+ L ++G +F +R+D L Sbjct: 1 MIGRLRGIVLEKQPPLVLIEAAGVGYEVHMPMTCFYELPELGQESVIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L V GVG ++A+ +LS ++A + V ++ + + ++PG+ K Sbjct: 61 FGFNNKQERSLFRELIKVNGVGPKLALAILSGMSAQQFVFAVEREEIGALVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN-KEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + L+ + S ++ A P A +ALV LGY +A Sbjct: 121 AERLVVEMKDRFKGLNGDLFTAASDISLPATAGKADEPDPQAEAEAALVALGYKPQEAAR 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V V + AD +IR ALRA Sbjct: 181 MVSKVAR---PDADCETLIREALRA 202 >gi|91978630|ref|YP_571289.1| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris BisB5] gi|123735096|sp|Q130V1|RUVA_RHOPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|91685086|gb|ABE41388.1| Holliday junction DNA helicase subunit RuvA [Rhodopseudomonas palustris BisB5] Length = 205 Score = 170 bits (431), Expect = 9e-41, Method: Composition-based stats. Identities = 90/206 (43%), Positives = 133/206 (64%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ EDYV++DV GV Y ++C RTL L G+ TL +ET++R+DQI+L Sbjct: 1 MIGKLKGLIDSYGEDYVILDVHGVGYQVHCSSRTLQALPSPGEAATLSIETYVREDQIKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +D +R+WF LLQ+VQ VGA+VA+ VLS + +L +I L++ +A+ PG+ K+ Sbjct: 61 FGFRTDHEREWFRLLQTVQSVGAKVALAVLSTLPPNDLANAIALRDKAAVARTPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI++ELK K +LS+V + + P +AISALVNLGYGQ QA A Sbjct: 121 AERIVSELKDKVPALSNVDPAVVQLSGALDDNRAPRP--VTDAISALVNLGYGQPQAAAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + + A +Q+I+L L+ +S Sbjct: 179 IAAAARAAGDDAATAQLIKLGLKELS 204 >gi|305665237|ref|YP_003861524.1| Holliday junction DNA helicase motor protein [Maribacter sp. HTCC2170] gi|88709990|gb|EAR02222.1| Holliday junction DNA helicase motor protein [Maribacter sp. HTCC2170] Length = 193 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 102/205 (49%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + +V+I+ GV Y + + T S L + + +L+ +++D L Sbjct: 1 MITHLKGKLVEKNPTHVIIECAGVGYFVNISLHTFSNLKDV-ENISLYTHLQVKEDSHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R+ F LL SV G+G+ A +LS ++ ++ ++I + I I GI K Sbjct: 60 FGFAEKSEREIFRLLLSVSGIGSSTARTMLSSLSPAQIRDAIANGDVATIQGIKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +L+ K + + + + +S S + A+SAL LG+ + QA Sbjct: 120 AQRVILDLRDKILKVYDIDEVSLS----------SNNTNKEEALSALEVLGFARRQAEKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V VL ++ ++ II+ AL+ + Sbjct: 170 VDKVLSQDSSL-SVENIIKHALKNL 193 >gi|148258116|ref|YP_001242701.1| Holliday junction DNA helicase RuvA [Bradyrhizobium sp. BTAi1] gi|166230521|sp|A5ERK1|RUVA_BRASB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|146410289|gb|ABQ38795.1| Holliday junction DNA helicase subunit RuvA [Bradyrhizobium sp. BTAi1] Length = 205 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 89/206 (43%), Positives = 134/206 (65%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ ED+V++DV GV Y ++C RTL L G+ TL +ET++R+DQI+L Sbjct: 1 MIGKLKGLIDSYAEDFVILDVGGVGYQVHCSARTLQALPSPGEAATLSIETYVREDQIKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF SD++R+WF LLQ+VQGVGA+VA+ VL + +L +I L++ +A+ PG+ K+ Sbjct: 61 FGFRSDVEREWFRLLQTVQGVGAKVALAVLGTLPPADLANAIALRDKAAVARTPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA + + V + + P +AISAL+NLGYGQ QA A Sbjct: 121 AERIVTELKDKAPAFADVDPGVIRLSGAIEDSRAPQP--IADAISALINLGYGQPQAAAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + + A+ +Q+IRL L+ ++ Sbjct: 179 IAAASRAAGDKAETAQLIRLGLKELA 204 >gi|227823320|ref|YP_002827292.1| Holliday junction DNA helicase RuvA [Sinorhizobium fredii NGR234] gi|254767382|sp|C3MIH6|RUVA_RHISN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|227342321|gb|ACP26539.1| holliday junction DNA helicase RuvA [Sinorhizobium fredii NGR234] Length = 205 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 92/206 (44%), Positives = 139/206 (67%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + ED+V++DV GV Y+ YC RTL+ LG G+ LF+ET++R+DQ+RL Sbjct: 1 MIGKLKGTIDEIGEDFVVLDVHGVGYVAYCSARTLAKLGSAGEAAVLFIETYVREDQLRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLS L+R+WF LLQ+VQGVG++VA+ +L+ +T EL +I LQ+ +A+ PG+ K+ Sbjct: 61 FGFLSALEREWFRLLQTVQGVGSKVALALLTTLTPGELANAIALQDKTSVARAPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA + + + + + + + P +A+SAL NLGY +DQA A Sbjct: 121 AVRIVTELKNKAPAFAGEMSASIGLKQELGEGVAAAP--VSDAVSALTNLGYSRDQAANA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + LK D +++IRL L+ ++ Sbjct: 179 VAAALKNGGEGGDSAKLIRLGLKELA 204 >gi|254805692|ref|YP_003083913.1| holliday junction DNA helicase [Neisseria meningitidis alpha14] gi|254669234|emb|CBA08082.1| holliday junction DNA helicase [Neisseria meningitidis alpha14] Length = 194 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 100/205 (48%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ LF + +R+D L Sbjct: 1 MISRLTGKLVEKTPPQIVIDVNGVGYEADVSMQTFCNLPPVGESVQLFTQLIIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L V G+GA+ A+G+LS +TA EL ++ ++ K ++ PGI K Sbjct: 61 FGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK ++ V + + L+ LGY + +A A Sbjct: 121 AERMVLELRGKLVA---------HTVTDGLFAAAPAADETEDIVGTLLALGYSEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V D + +RLAL+ + Sbjct: 172 VKGV----PKGTDVGEGVRLALKNL 192 >gi|91216982|ref|ZP_01253945.1| Holliday junction DNA helicase motor protein [Psychroflexus torquis ATCC 700755] gi|91184853|gb|EAS71233.1| Holliday junction DNA helicase motor protein [Psychroflexus torquis ATCC 700755] Length = 193 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 99/205 (48%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + ++++D G+ Y + + T S L K + T++ +++D L Sbjct: 1 MITQLRGRLLEKNPTHIVVDCNGIGYEVNISLHTFSRL-KGEEQITIYTHLQVKEDSHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ +R F L SV G+GA A +LS +T ++VE+I ++S I I GI K Sbjct: 60 YGFMEKAERLVFRQLLSVSGIGANTARMMLSSLTPEQVVEAISTEDSDTIQSIKGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K S + S A+SAL LGY + Q+ Sbjct: 120 AQRVILDLKDKIR----------SSEEYSEIVNTPSNSNKEEALSALETLGYTRKQSGKI 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + A+ II+LAL+ + Sbjct: 170 ISKICNNNPD-ANVEDIIKLALKNL 193 >gi|322420882|ref|YP_004200105.1| Holliday junction DNA helicase RuvA [Geobacter sp. M18] gi|320127269|gb|ADW14829.1| Holliday junction DNA helicase RuvA [Geobacter sp. M18] Length = 199 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 100/205 (48%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G I D+V++DV GV Y ++ P T L G TL + T +++D I L Sbjct: 1 MIALLTGKIAYKAPDHVILDVNGVGYHVFIPFSTYYALPAEGGTATLQIHTSVKEDAINL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +++ F LL V GVG ++A +LS EL ES++ + ++ IPGI K Sbjct: 61 YGFRTQQEKELFQLLIGVSGVGPKLANSILSNSEPAELAESLVSGDLARLSAIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K L ++ A + +SAL+NLGY + A Sbjct: 121 AERLVLELKEKIRKLG------IAQPATSAAAAPVRQETREDVLSALINLGYKESVVQKA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + K A +++ AL+ + Sbjct: 175 LGEL--KFPEDATVEALLKQALKVL 197 >gi|332184195|gb|AEE26449.1| Holliday junction DNA helicase RuvA [Francisella cf. novicida 3523] Length = 216 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 59/212 (27%), Positives = 103/212 (48%), Gaps = 12/212 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + +LIDV G+ Y ++ P+ T LG I +L+ +R+D +L Sbjct: 1 MISFIKGVLIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQISLYTHFVVREDAQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +D++ F L V G+GAR A+ +LS + + L+ I ++ ++A +PGI K Sbjct: 61 YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSC---------VNKEQAHICSMPSFAINAISALVNLG 171 A R++ E+ K + +++ + S + S ++ AL+ LG Sbjct: 121 AERLVVEIYDKLLKMANEIYAQSSGTKVANLDSQAPQVPTPTVLANSIFNESVDALLALG 180 Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 Y Q A S + + +++IR AL+ Sbjct: 181 YKQKDAEKMARSAM---GDATTAAEVIRKALQ 209 >gi|120434550|ref|YP_860244.1| Holliday junction ATP-dependent DNA helicase RuvA [Gramella forsetii KT0803] gi|166230555|sp|A0LXS4|RUVA_GRAFK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|117576700|emb|CAL65169.1| Holliday junction ATP-dependent DNA helicase RuvA [Gramella forsetii KT0803] Length = 193 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 100/205 (48%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + YV+I+ G+ Y I + T S + + +++ +++D L Sbjct: 1 MIHHLKGQLIEKNPTYVVIECNGIGYYINISLHTFSLIPDS-EAVSVYTHLQVKEDSHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F LL SV GVG A +LS + E+ E+I ++ I + GI K Sbjct: 60 YGFAEKSEREIFRLLISVSGVGTSTARMMLSSLQPREVTEAIASEDVATIQSVKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + + + ++ + + A+SAL LGY + QA Sbjct: 120 AQRVILDLKDKVLKV----------LGDDEVFVSQSNTNKEEALSALEILGYNRRQAGKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +LK++ + II++AL+ + Sbjct: 170 VEKILKEDPE-STVESIIKMALKKL 193 >gi|254429429|ref|ZP_05043136.1| Holliday junction DNA helicase RuvA [Alcanivorax sp. DG881] gi|196195598|gb|EDX90557.1| Holliday junction DNA helicase RuvA [Alcanivorax sp. DG881] Length = 200 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 96/206 (46%), Gaps = 7/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L+DV GV Y + P+ L G TL +R+D L Sbjct: 1 MIGQLRGTLLEKRPPVLLLDVGGVGYEVEAPMTVFYDLPDAGAELTLHTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L V GVG ++A+ +LS I A L I Q++ + ++PGI K Sbjct: 61 YGFADRYERELFRALIKVNGVGPKMALAILSGIEADRLARCIQDQDTTSLVKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+ + + V+ Q +AI+AL LGY A A Sbjct: 121 AERLVIEMSDRLDKIDGGPVSLPGRVDTRQPD-----DARSDAIAALEALGYRNKDAAAA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V ++ Q+IR AL++++ Sbjct: 176 VAKAADEDG--LSSEQLIRKALKSLA 199 >gi|160896673|ref|YP_001562255.1| Holliday junction DNA helicase RuvA [Delftia acidovorans SPH-1] gi|229560027|sp|A9BUG7|RUVA_DELAS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|160362257|gb|ABX33870.1| Holliday junction DNA helicase RuvA [Delftia acidovorans SPH-1] Length = 190 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 99/206 (48%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G + VL+D GV Y + P+ T L G +L +R+D L Sbjct: 1 MIGKLTGTLLEKNPPEVLVDCGGVGYEVQVPMSTFYNLPASGAKVSLLTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +RQ F L + G+G R+A+ VLS ++ +L +++ LQ + ++PGI K Sbjct: 61 YGFGTHSERQAFRELIKITGIGPRMALSVLSGMSVEDLAQAVTLQEVGRLVKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + A + + + + AL+ LGY A A Sbjct: 121 AERLLLELKGKIGA-------------DTGAQSLFVNNDQNDIVQALMALGYSDKDAAAA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + ++ I+LAL+A++ Sbjct: 168 LKKL----PPDVGVTEGIKLALKALA 189 >gi|147677361|ref|YP_001211576.1| holliday junction resolvasome, DNA-binding subunit [Pelotomaculum thermopropionicum SI] gi|146273458|dbj|BAF59207.1| holliday junction resolvasome, DNA-binding subunit [Pelotomaculum thermopropionicum SI] Length = 211 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 98/205 (47%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + + V++DV G+ Y + P+ L+ L G+ L+ +R++ L Sbjct: 16 MISYIKGKLAEVQAGAVVLDVGGIGYRVQVPLSVLNKLPARGEDVLLYTHLAVREEGFFL 75 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +F+ L V G+G +VA+ +L+ + EL II ++ + ++PG+ K Sbjct: 76 YGFSDQNELGFFLKLLGVSGIGPKVALAILTIFSPDELGRIIIGGDTAALTRVPGVGKKT 135 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + + + +A+ AL LGY +A A Sbjct: 136 AGRIILELKDKVTETTLERE-----------PLSGRSGVEADAVEALEALGYTAAEALKA 184 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V VLK ++I+R ALR + Sbjct: 185 VKEVLKG-PGQPSAAEIVREALRLL 208 >gi|251789856|ref|YP_003004577.1| Holliday junction DNA helicase RuvA [Dickeya zeae Ech1591] gi|247538477|gb|ACT07098.1| Holliday junction DNA helicase RuvA [Dickeya zeae Ech1591] Length = 205 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 100/206 (48%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLI+ GV Y ++ P+ L +G +F +R+D L Sbjct: 1 MIGRLRGIVLEKQPPLVLIEAGGVGYEVHMPMTCFYELPDLGQEAVIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L V GVG ++A+ +LS ++A + V ++ Q + ++PG+ K Sbjct: 61 FGFNNKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAVERQEINTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMS--CVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + L+ + S + + A +ALV LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNADSDMALPAQTGEAAPQADPQAEAEAALVALGYKPQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 V V + AD +IR ALRA Sbjct: 181 RMVNKVSR---PGADCETLIRDALRA 203 >gi|209886413|ref|YP_002290270.1| holliday junction DNA helicase RuvA [Oligotropha carboxidovorans OM5] gi|226698735|sp|B6JIZ6|RUVA_OLICO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|209874609|gb|ACI94405.1| holliday junction DNA helicase RuvA [Oligotropha carboxidovorans OM5] Length = 205 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 94/206 (45%), Positives = 137/206 (66%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ EDYV++DVQGV Y+++C RTL L G+ L +ET++R+DQI+L Sbjct: 1 MIGKLKGVIDSYGEDYVILDVQGVGYLVHCATRTLQALPSSGEAAVLSIETYVREDQIKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF SD++R+WF LLQ+VQGVGA+VA+ VLS + ++L +I L++ +A+ PG+ K+ Sbjct: 61 FGFRSDIEREWFRLLQTVQGVGAKVALAVLSTLPPSDLANAIALRDKAAVARTPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA + ++V + P +AISALVNLGYGQ QA A Sbjct: 121 AERIVTELKDKAPAFANVDPAVVHLAGAVDDDRAPRP--VKDAISALVNLGYGQPQAAAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + SV + A+ +Q+IRL L+ ++ Sbjct: 179 IASVARDAGEGAETAQLIRLGLKELA 204 >gi|52841519|ref|YP_095318.1| Holliday junction DNA helicase RuvA [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|81377601|sp|Q5ZW00|RUVA_LEGPH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|52628630|gb|AAU27371.1| Holliday junction DNA helicase RuvA [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 199 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 93/207 (44%), Gaps = 11/207 (5%) Query: 1 MIGKIKGNIEGL-YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG + G I +++DV GV Y + + T + L + T +R+D + Sbjct: 1 MIGWLHGQIIDKHQPGKLVLDVNGVGYDVETSLNTFFQIENGNQPVGLHIHTIVREDALL 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL +R F L V GVG ++AM VLS I+ E ++ I +N+ ++ ++PGI K Sbjct: 61 LYGFLDKEERSLFRSLIKVNGVGPKLAMTVLSSISPKEFIQCIHQENAALLTKLPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E++ V AISAL LGY +A Sbjct: 121 TAERLVVEMRDSIKQFDGSVSDTF-------QKQAGSTHSQQEAISALEALGYKPQEAWK 173 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 + + + Q+IR AL+ +S Sbjct: 174 VMNKI---DNGNKSCEQLIREALQILS 197 >gi|15602842|ref|NP_245914.1| Holliday junction DNA helicase motor protein [Pasteurella multocida subsp. multocida str. Pm70] gi|13431841|sp|P57893|RUVA_PASMU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|12721303|gb|AAK03061.1| RuvA [Pasteurella multocida subsp. multocida str. Pm70] Length = 204 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 67/205 (32%), Positives = 98/205 (47%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + + +L+DVQGV Y + P+ + L IG LF +R+D L Sbjct: 1 MIGHLTGRLVEKHPPEILLDVQGVGYELLLPMTSFYQLPDIGQQTALFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ E +I + + +IPG+ K Sbjct: 61 FGFSQKTDRTLFRELIKTNGVGPKLALAILSAMSVEEFAYAIEREELSKLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF-AINAISALVNLGYGQDQATT 179 A R++ ELKGK + S K+ H + A AISAL+ LGY +A Sbjct: 121 AERLLVELKGKFKGIQQEDFFIESQHLKQPEHALNEQDIPASEAISALIALGYKAAEAEK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V + K Q+IR AL+A Sbjct: 181 LVKKISK---PALSSEQLIREALKA 202 >gi|224456850|ref|ZP_03665323.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp. tularensis MA00-2987] gi|254370278|ref|ZP_04986283.1| holliday junction DNA helicase [Francisella tularensis subsp. tularensis FSC033] gi|254874591|ref|ZP_05247301.1| holliday junction DNA helicase [Francisella tularensis subsp. tularensis MA00-2987] gi|90135024|sp|Q5NH17|RUVA_FRATT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|151568521|gb|EDN34175.1| holliday junction DNA helicase [Francisella tularensis subsp. tularensis FSC033] gi|254840590|gb|EET19026.1| holliday junction DNA helicase [Francisella tularensis subsp. tularensis MA00-2987] gi|282158951|gb|ADA78342.1| holliday junction DNA helicase, subunit A [Francisella tularensis subsp. tularensis NE061598] Length = 216 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 12/212 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + +LIDV G+ Y ++ P+ T LG I +L+ +R+D +L Sbjct: 1 MISFIKGVLIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQVSLYTHFVVREDAQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +D++ F L V G+GAR A+ +LS + + L+ I ++ ++A +PGI K Sbjct: 61 YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDM---------SCVNKEQAHICSMPSFAINAISALVNLG 171 A R++ E+ K + +++ + S + + S ++ AL+ LG Sbjct: 121 AERLVVEIYDKLLKMANEIYAQTSGTTTTSQDSQAQQAPTSVVLANSIFNESVDALLALG 180 Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 Y Q A S + + +++IR AL+ Sbjct: 181 YKQKDAEKMARSAM---GDATTVAEVIRKALQ 209 >gi|83312317|ref|YP_422581.1| Holliday junction DNA helicase RuvA [Magnetospirillum magneticum AMB-1] gi|123726899|sp|Q2W2A3|RUVA_MAGMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|82947158|dbj|BAE52022.1| Holliday junction resolvasome, DNA-binding subunit [Magnetospirillum magneticum AMB-1] Length = 212 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 80/207 (38%), Positives = 121/207 (58%), Gaps = 3/207 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+KG I+ L +D+ ++D GV Y++ C +TL+ L + G LFVET +R+D I L Sbjct: 1 MIAKLKGLIDSLGDDWAVVDCNGVGYLVACSSKTLARL-ETGTAAALFVETQVREDAISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL +R WF LL +VQGVGA+VA+ +LS + +L++ I Q+ + + G+ K+ Sbjct: 60 FGFLETGERDWFRLLTTVQGVGAKVALAILSVASPDQLLQIIAAQDKAGLTRANGVGPKL 119 Query: 121 ASRIMTELKGKAIS--LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A RI+TELK KA L + A + + +A+SALVNLGY + +A Sbjct: 120 AVRILTELKDKAGKIALGGFSPGGIKDALSASAPLPAASGRMEDAVSALVNLGYKRLEAF 179 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 AV ++ + AD S +IR AL+ + Sbjct: 180 QAVGETARELGDEADSSALIRAALKHL 206 >gi|33594301|ref|NP_881945.1| Holliday junction DNA helicase motor protein [Bordetella pertussis Tohama I] gi|33602977|ref|NP_890537.1| Holliday junction DNA helicase motor protein [Bordetella bronchiseptica RB50] gi|44888431|sp|Q7VTT9|RUVA_BORPE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|44888438|sp|Q7WGB6|RUVA_BORBR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|33564376|emb|CAE43681.1| holliday junction DNA helicase [Bordetella pertussis Tohama I] gi|33568608|emb|CAE34366.1| holliday junction DNA helicase [Bordetella bronchiseptica RB50] gi|332383712|gb|AEE68559.1| Holliday junction DNA helicase RuvA [Bordetella pertussis CS] Length = 190 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 67/205 (32%), Positives = 104/205 (50%), Gaps = 17/205 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + V +DV GV Y I P+ TL L + G TLF +R+D L Sbjct: 1 MIGRITGTLIEKSPPVVCVDVNGVGYEIDVPMSTLYALPETGARVTLFTHLVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L V G+GAR A+ VLS ++ EL ++I LQ + + ++PGI K Sbjct: 61 YGFGSSAERSTFRELIKVTGIGARTALAVLSGLSVAELSQAITLQETGRLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++GK + A + + ++AL+ LGY ++ A Sbjct: 121 AERLLLEMRGKLGA-------------DIGATPHAASGHQSDILNALLALGYSDKESQAA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + D S+ IRLAL+A+ Sbjct: 168 LKKL----PDGVDVSEGIRLALKAL 188 >gi|163758803|ref|ZP_02165890.1| Holliday junction DNA helicase motor protein [Hoeflea phototrophica DFL-43] gi|162284093|gb|EDQ34377.1| Holliday junction DNA helicase motor protein [Hoeflea phototrophica DFL-43] Length = 205 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 101/206 (49%), Positives = 141/206 (68%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG IE + ED+VLIDV GVCY+ +C RTLS LG G+ LF+ET++R+DQ++L Sbjct: 1 MIGKLKGTIEEIDEDHVLIDVHGVCYVAFCSSRTLSRLGSAGEAAVLFIETYVREDQLKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + L+R+WF LLQSVQGVGA+VA+ VLS +T +EL +I LQ+ ++A+ PGI K+ Sbjct: 61 FGFETALEREWFRLLQSVQGVGAKVALAVLSTLTTSELANAIALQDKAMVARAPGIGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK KA +LS M + + S P +A+SAL NLGY +DQA A Sbjct: 121 AQRIVAELKNKAPALSGDAGSTMGLKQELGEGVASAP--IADAVSALCNLGYSRDQAANA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + +K AD +++IRL L+ ++ Sbjct: 179 VAAAMKTAGEDADSAKLIRLGLKELA 204 >gi|153855299|ref|ZP_01996465.1| hypothetical protein DORLON_02479 [Dorea longicatena DSM 13814] gi|149752298|gb|EDM62229.1| hypothetical protein DORLON_02479 [Dorea longicatena DSM 13814] Length = 204 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 100/205 (48%), Gaps = 2/205 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G +EG+ ED V++DV GV Y IY + L +G + H+++D ++L Sbjct: 1 MITYIRGILEGMEEDKVIVDVGGVGYGIYMAGTAMGRLPALGKEVKIHTHLHVKEDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + + F LL V G+G + +G+LS + +L ++ + K I PGI K Sbjct: 61 YGFLTRDELRVFRLLIGVSGIGPKGGLGILSALGPDDLRFAVASNDVKAIQAAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK K ++ + N A+ ALV LGYG +A A Sbjct: 121 AEKLILELKDKLKLEDALENAANAVQNTADTSAGMANEMTGEAVQALVALGYGNTEALKA 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V + ++R +L+ + Sbjct: 181 VRQV--EITEEMSVEDVLRQSLKYM 203 >gi|332519991|ref|ZP_08396455.1| Holliday junction DNA helicase RuvA [Lacinutrix algicola 5H-3-7-4] gi|332044550|gb|EGI80744.1| Holliday junction DNA helicase RuvA [Lacinutrix algicola 5H-3-7-4] Length = 193 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 97/205 (47%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + V+ID GV Y++ + T S + + LF +++D L Sbjct: 1 MITHIKGKMVEKNPTDVVIDCNGVGYLLNISLNTFSQIPDQ-ESIHLFTHLQVKEDAHSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F LL SV G+G A +LS +T ++ E I + +I I GI K Sbjct: 60 YGFFTKGEREVFRLLISVSGIGTNTARTMLSSLTPKQIREGIATADVALIQSIKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + + + + + + A+SAL LG+ + QA Sbjct: 120 AQRVILDLKDKILKIYDIDE----------VSVNRNNTNKDEALSALEVLGFAKKQAERV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ + A II+LAL+ + Sbjct: 170 VDKIVVAQPE-ASVEAIIKLALKNL 193 >gi|264680422|ref|YP_003280332.1| Holliday junction DNA helicase RuvA [Comamonas testosteroni CNB-2] gi|262210938|gb|ACY35036.1| Holliday junction DNA helicase RuvA [Comamonas testosteroni CNB-2] Length = 191 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 98/205 (47%), Gaps = 16/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G + VL+D GV Y + P+ T L G L +R+D L Sbjct: 1 MIGKLTGTLLEKNPPEVLVDCAGVGYEVQVPMSTFYNLPANGAKVALLTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +RQ F L + G+G R+A+ VLS ++ +L +++ Q + + ++PGI K Sbjct: 61 FGFGTARERQTFRELIKITGIGPRMALAVLSGMSIDDLADAVSQQQAGRLVKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + + + + + AL+ LGY +A+ A Sbjct: 121 AERLLLELKGKI------------GADTGAQSLFANNNDQNDIQQALMALGYSDKEASAA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + S+ I+LAL+A+ Sbjct: 169 LKKL----PPDVGVSEGIKLALKAL 189 >gi|325267123|ref|ZP_08133791.1| crossover junction ATP-dependent DNA helicase RuvA [Kingella denitrificans ATCC 33394] gi|324981361|gb|EGC17005.1| crossover junction ATP-dependent DNA helicase RuvA [Kingella denitrificans ATCC 33394] Length = 194 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 100/205 (48%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + ++IDVQGV Y + ++T L G+ L+ + +R+D L Sbjct: 1 MIGRLHGILAEKQPPQIVIDVQGVGYEVEVSMQTFYTLPAAGEAVRLYTQLIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L V G+GA+ A+G+LS +++ EL +++ ++ K ++ +PGI K Sbjct: 61 FGFADAGERATFRQLIKVSGIGAKTALGILSALSSDELAQAVAQEDVKRLSSVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK S + + + L+ LGY + +A A Sbjct: 121 AERMILELRGKLAG---------SSAADTALFAAAAQDSRQDVVQTLMALGYSEKEAQAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 K + + + +R AL+ + Sbjct: 172 ----CKSLPDDVEVGEGVRQALKLM 192 >gi|187925318|ref|YP_001896960.1| Holliday junction DNA helicase RuvA [Burkholderia phytofirmans PsJN] gi|229560013|sp|B2SYK1|RUVA_BURPP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|187716512|gb|ACD17736.1| Holliday junction DNA helicase RuvA [Burkholderia phytofirmans PsJN] Length = 193 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 107/206 (51%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++LID GV Y + P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGVLLEKNPPHLLIDCNGVGYEVDVPMSTFYNLPSTGERVVLLTQMIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L + G+GAR+A+ VLS ++ EL +++ +Q++ + ++PGI K Sbjct: 61 YGFGTAEERSTFRELLKISGIGARMALAVLSGMSVHELAQTVTMQDAARLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK A S A + ++AL+ LGY + +A TA Sbjct: 121 AERLLLELKGKI-----------GADLGAMAGAASASDHASDILNALLALGYSEKEALTA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V +V S+ I+LAL+A+S Sbjct: 170 VKNV----PAGTGVSEGIKLALKALS 191 >gi|56707779|ref|YP_169675.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp. tularensis SCHU S4] gi|110670250|ref|YP_666807.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp. tularensis FSC198] gi|56604271|emb|CAG45291.1| holliday junction DNA helicase, subunit A [Francisella tularensis subsp. tularensis SCHU S4] gi|110320583|emb|CAL08674.1| holliday junction DNA helicase, subunit A [Francisella tularensis subsp. tularensis FSC198] Length = 217 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 12/212 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + +LIDV G+ Y ++ P+ T LG I +L+ +R+D +L Sbjct: 2 MISFIKGVLIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQVSLYTHFVVREDAQQL 61 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +D++ F L V G+GAR A+ +LS + + L+ I ++ ++A +PGI K Sbjct: 62 YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 121 Query: 121 ASRIMTELKGKAISLSSVVQQDM---------SCVNKEQAHICSMPSFAINAISALVNLG 171 A R++ E+ K + +++ + S + + S ++ AL+ LG Sbjct: 122 AERLVVEIYDKLLKMANEIYAQTSGTTTTSQDSQAQQAPTSVVLANSIFNESVDALLALG 181 Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 Y Q A S + + +++IR AL+ Sbjct: 182 YKQKDAEKMARSAM---GDATTVAEVIRKALQ 210 >gi|167627795|ref|YP_001678295.1| Holliday junction DNA helicase RuvA [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597796|gb|ABZ87794.1| Holliday junction DNA helicase, subunit A [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 218 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 12/212 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + +LIDV G+ Y ++ P+ T LG+I +L+ +R+D +L Sbjct: 2 MISFIKGTLIEKDPTALLIDVNGLGYEVFVPMTTFYSLGEINSQVSLYTHFVVREDAQQL 61 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +D++ F L V G+GAR A+ +LS + +T L+ I ++ ++A +PGI K Sbjct: 62 YGFKTKVDKKVFQELIKVSGIGARTAIAILSGMDSTTLLHCIENKDYGLLATVPGIGKKT 121 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKE---------QAHICSMPSFAINAISALVNLG 171 A R++ E+ K + +++ + S + Q S ++ AL+ LG Sbjct: 122 AERLVVEIYDKLLKMANEIYSQSSNTSASINANSVQHAQTPAAISNSIFSESVDALLALG 181 Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 Y Q A + + ++ IR AL+ Sbjct: 182 YKQKDAEKMIRGTI---GESTTAAEAIRKALQ 210 >gi|209965101|ref|YP_002298016.1| Holliday junction DNA helicase RuvA [Rhodospirillum centenum SW] gi|226698737|sp|B6ITI5|RUVA_RHOCS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|209958567|gb|ACI99203.1| holliday junction DNA helicase RuvA [Rhodospirillum centenum SW] Length = 206 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 76/206 (36%), Positives = 113/206 (54%), Gaps = 1/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+ G ++ D+ ++DV GV Y++ RTL L G+ +L E + +D I+L Sbjct: 1 MIAKLTGLLDSTGLDWAIVDVGGVGYLVSASARTLRRLAAPGEAVSLLTEMWVSEDNIQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R WF LL +VQGVGARVA+ +LS ++ EL SI Q+ + Q G+ K+ Sbjct: 61 FGFADTEERDWFRLLTTVQGVGARVALNLLSALSPAELTNSIAAQDRTALCQADGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ ELK K S + + A +A+SALVNLGY + +A TA Sbjct: 121 AARILNELKEKVASFGAPAPAAATAGKG-GAAPAGPAGAVADAVSALVNLGYRRVEAFTA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V +V ++ A S +IR L+ +S Sbjct: 180 VNAVAQRLGPEAGVSDLIRAGLKELS 205 >gi|222149652|ref|YP_002550609.1| Holliday junction DNA helicase RuvA [Agrobacterium vitis S4] gi|254766936|sp|B9JRI6|RUVA_AGRVS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|221736634|gb|ACM37597.1| Holliday junction DNA helicase RuvA [Agrobacterium vitis S4] Length = 205 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 94/206 (45%), Positives = 141/206 (68%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + +D+VL+DV GVCY+ +C RTL+ LG G+ LF+ET++R+DQ++L Sbjct: 1 MIGKLKGTIDEIGDDHVLVDVHGVCYVAHCSSRTLARLGSPGEAIVLFIETYVREDQLKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+S L+R+WF LLQSVQGVGA+VA+ +L+ +T +EL +I LQ+ IA+ PG+ K+ Sbjct: 61 FGFMSALEREWFNLLQSVQGVGAKVALAILATLTPSELANAIALQDKPAIARAPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++TELK KA + + + + + S P +A+SAL NLGY +DQA A Sbjct: 121 ALRLVTELKNKAPAFTGDAGSAIGLKQELGEGVASAP--VSDAVSALTNLGYSRDQAANA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + LK AD +++IRL L+ +S Sbjct: 179 IAAALKNGGEGADSAKLIRLGLKELS 204 >gi|220921373|ref|YP_002496674.1| Holliday junction DNA helicase RuvA [Methylobacterium nodulans ORS 2060] gi|254767374|sp|B8IM27|RUVA_METNO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|219945979|gb|ACL56371.1| Holliday junction DNA helicase RuvA [Methylobacterium nodulans ORS 2060] Length = 205 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 88/206 (42%), Positives = 130/206 (63%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ ED+V++DV GV Y+++C RTL L +G+ L +ETH+R+D IRL Sbjct: 1 MIGKLKGVVDSYGEDFVILDVHGVGYVVHCSARTLQRLPPVGEAADLAIETHVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF SD +R+WF LLQ+VQGVG RVA+GVLS + +L +I + IA+ PG+ ++ Sbjct: 61 YGFRSDAEREWFRLLQTVQGVGTRVALGVLSVLEPADLATAIATGDKGAIARAPGVGPRL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+R++ ELK KA + + V + + P +AISALVNLGY Q QA+ A Sbjct: 121 AARLVAELKDKAPAFAPVDPALIRLAGAVEERTAPQP--VADAISALVNLGYPQIQASAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + L+ A+ +IRL LR ++ Sbjct: 179 VAAALQGAGEGAEAKTLIRLGLRELA 204 >gi|117923791|ref|YP_864408.1| Holliday junction DNA helicase RuvA [Magnetococcus sp. MC-1] gi|166230563|sp|A0L4V9|RUVA_MAGSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|117607547|gb|ABK43002.1| Holliday junction DNA helicase subunit RuvA [Magnetococcus sp. MC-1] Length = 204 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 106/206 (51%), Gaps = 4/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++KG++ + D+V++DV GV Y ++ + T + L +G+ C L+ TH+R+D L Sbjct: 1 MIAQLKGSLAAKHPDHVVMDVHGVGYRVFISLATYNELPTVGEACLLYTVTHVREDAFLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ R+ F LL SV G+G ++A+ LS T L+ ++ ++ ++ IPG+ K Sbjct: 61 YGFHSESQRKVFNLLTSVNGIGTKLALAALSSHTPEALLTALSREDLTLLCTIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ELK K +L A+ SAL+NLGY Q A Sbjct: 121 AQRMAMELKDKLGALPMAAPTTAIGAATMAANPA---GLREEVASALLNLGYKPPQVDAA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + I D S ++ AL+ ++ Sbjct: 178 LAKLFSA-GEITDISVALKGALKLLA 202 >gi|91785164|ref|YP_560370.1| Holliday junction DNA helicase motor protein [Burkholderia xenovorans LB400] gi|296157351|ref|ZP_06840187.1| Holliday junction DNA helicase RuvA [Burkholderia sp. Ch1-1] gi|123358465|sp|Q13UC1|RUVA_BURXL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|91689118|gb|ABE32318.1| DNA recombination protein, RuvA [Burkholderia xenovorans LB400] gi|295892687|gb|EFG72469.1| Holliday junction DNA helicase RuvA [Burkholderia sp. Ch1-1] Length = 193 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 106/206 (51%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y + P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGVLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPSTGERVVLLTQMIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L + G+GAR+A+ VLS ++ EL +++ +Q++ + ++PGI K Sbjct: 61 YGFGTAEERSTFRELLKISGIGARMALAVLSGMSVHELAQTVTMQDAARLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK A S A + ++AL+ LGY + +A A Sbjct: 121 AERLLLELKGKI-----------GADLGAMAGAASASDHASDILNALLALGYSEKEALAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V +V S+ I+LAL+A+S Sbjct: 170 VKNV----PAGTGVSEGIKLALKALS 191 >gi|85714394|ref|ZP_01045382.1| Holliday junction DNA helicase motor protein [Nitrobacter sp. Nb-311A] gi|85698841|gb|EAQ36710.1| Holliday junction DNA helicase motor protein [Nitrobacter sp. Nb-311A] Length = 205 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 93/206 (45%), Positives = 134/206 (65%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ EDYV++DV GV Y ++C RTL L G+ L +ET++R+DQI+L Sbjct: 1 MIGKLKGIIDSYGEDYVILDVGGVGYQVHCASRTLQALPSPGEAAVLSIETYVREDQIKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +D +R+WF LLQSVQGVGARVA+ VL ++ +L ++ L++ +A+ PG+ K+ Sbjct: 61 FGFRTDHEREWFRLLQSVQGVGARVALAVLGTLSPADLASAVALRDKASVARTPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA S ++V + V P +AISALVNLGYGQ QAT A Sbjct: 121 AERIVTELKDKAPSFANVDPAVVHLVGAVDDRRAPGP--VTDAISALVNLGYGQPQATAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + A+ +Q+IRL L+ ++ Sbjct: 179 IAAAARGAGENAETAQLIRLGLKELA 204 >gi|332292213|ref|YP_004430822.1| Holliday junction DNA helicase RuvA [Krokinobacter diaphorus 4H-3-7-5] gi|332170299|gb|AEE19554.1| Holliday junction DNA helicase RuvA [Krokinobacter diaphorus 4H-3-7-5] Length = 193 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 97/205 (47%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + +V++D GV Y I + T LG + L +++D L Sbjct: 1 MITHLSGRLIEKNPTHVVLDCNGVGYFINISLHTFGRLGDS-EALKLHTHLQVKEDSHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+ ++R+ F LL SV G+GA A +LS + ++ ++I + I I GI K Sbjct: 60 FGFVEVMEREIFRLLLSVSGIGASTARTMLSSLDPHQIKQAIASNDVATIQSIKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + + + + + A+SAL LG+ + QA Sbjct: 120 AQRVILDLKDKILKVYDMSSE----------SAVQSNTSKEEALSALETLGFARKQAEKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 +++K++ + A II+ AL+ + Sbjct: 170 CTAIVKEKPD-ASVETIIKEALKKL 193 >gi|296535992|ref|ZP_06898136.1| crossover junction ATP-dependent DNA helicase RuvA [Roseomonas cervicalis ATCC 49957] gi|296263678|gb|EFH10159.1| crossover junction ATP-dependent DNA helicase RuvA [Roseomonas cervicalis ATCC 49957] Length = 207 Score = 169 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 68/206 (33%), Positives = 113/206 (54%), Gaps = 1/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ ++ + DV GV Y++ C RTL+ L +L +ET +R+D I L Sbjct: 1 MIGKLTGKLDSQFDGGCIFDVNGVGYLVACSARTLAALPAPPGIGSLLIETVVREDAILL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R W+ L +QGVG +VA+G+LS ++ +L ++I + I + PG+ K+ Sbjct: 61 YGFADATERDWYRTLTGIQGVGPKVALGLLSTLSPADLARALIAGDKGAINRAPGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+R++ EL+ K +L + V A + +AISAL NLG+ + +A A Sbjct: 121 AARLVAELRDKVGALPTGPGLSAGTV-TIAAQLPPADRAQADAISALTNLGWKRPEAAGA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V V +K A +IR AL+ ++ Sbjct: 180 VQRVAEKLGEGAGLESLIREALKELA 205 >gi|317131997|ref|YP_004091311.1| Holliday junction DNA helicase RuvA [Ethanoligenens harbinense YUAN-3] gi|315469976|gb|ADU26580.1| Holliday junction DNA helicase RuvA [Ethanoligenens harbinense YUAN-3] Length = 199 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 91/206 (44%), Gaps = 9/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + +I GV + TL L G+ L+ ++R+D + L Sbjct: 1 MIYSLKGTLTHTGPGMAVISCGGVGFKCLTTANTLGALPPPGEEAFLYTHLNVREDALDL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ + F +L V GVG + A+ +LS T + S+ ++K + + PGI KI Sbjct: 61 YGFGSEEELHCFRMLIGVSGVGPKAALSILSGTTPAQFAFSVASGDAKALTRAPGIGSKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K +Q + A A+SALV LGY +A A Sbjct: 121 AQRIVLELKDKING-----EQAAANFTGGTPVPAVSGGSAAEAVSALVVLGYSGTEAQGA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V IIR ALR ++ Sbjct: 176 VNRC----DPAQSVEDIIRQALRLLA 197 >gi|258593140|emb|CBE69451.1| Holliday junction DNA helicase ruvA [NC10 bacterium 'Dutch sediment'] Length = 208 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 104/206 (50%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + ++IDV GV Y ++ P+ T L +I L + TH+R+D I+L Sbjct: 1 MIAQLRGLLASKDPGQIVIDVNGVGYQVFVPLSTFYQLPEIQQEVHLRIYTHVREDAIQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F LL V G+G R+A +LS I E + +++ ++ + IPG+ K Sbjct: 61 YGFHAIEERITFELLTGVSGIGPRLAANILSGIAVEEFIPAVLEGDTARLKAIPGVGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + V ++ + +SAL+NLG + +A+ A Sbjct: 121 AERIILELKDKVTEVPCR-----GRVVVDRQPSPERDRTIEDVVSALLNLGCSRKEASAA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + D +++ AL+ +S Sbjct: 176 AEAAHHTVGDGTDFETLVKQALKHLS 201 >gi|221064959|ref|ZP_03541064.1| Holliday junction DNA helicase RuvA [Comamonas testosteroni KF-1] gi|220709982|gb|EED65350.1| Holliday junction DNA helicase RuvA [Comamonas testosteroni KF-1] Length = 191 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 16/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G + VL+D GV Y + P+ T L G L +R+D L Sbjct: 1 MIGKLTGTLLEKNPPEVLVDCAGVGYEVQVPMSTFYNLPANGAKVALLTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +RQ F L + G+G R+A+ VLS ++ +L +++ Q + + ++PGI K Sbjct: 61 FGFATARERQTFRELIKITGIGPRMALAVLSGMSIDDLADAVSQQQAGRLVKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + + + S + AL+ LGY +A+ A Sbjct: 121 AERLLLELKGKI------------GADTGAQSLFANNSEQNDIQQALMALGYSDKEASAA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + S+ I+LAL+A+ Sbjct: 169 LKKL----PPEVGVSEGIKLALKAL 189 >gi|113866527|ref|YP_725016.1| Holliday junction DNA helicase RuvA [Ralstonia eutropha H16] gi|123033276|sp|Q0KEC3|RUVA_RALEH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|113525303|emb|CAJ91648.1| holliday junction resolvasome, DNA-binding subunit RuvA [Ralstonia eutropha H16] Length = 193 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 103/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y + P+ T L +G TL + +R+D L Sbjct: 1 MIGRIAGTLIEKNPPHLLVDCHGVGYEVDVPMSTFYNLPAVGQPVTLLTQLIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L + G+GAR+A+ VLS ++ EL ++I LQ + + +IPGI K Sbjct: 61 YGFGTASERNTFRELIKITGIGARMALAVLSGMSVPELAQAITLQEAGRLTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ++ + ++P A++ ++AL+ LGY + +A A Sbjct: 121 AERL-----------LLELKGKLGAELGHVPGTPAVPDSAVDVLNALLALGYSEKEAAAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + V S I+LAL+A+S Sbjct: 170 IKQV----PAGTGVSDGIKLALKALS 191 >gi|315634723|ref|ZP_07890007.1| crossover junction ATP-dependent DNA helicase RuvA [Aggregatibacter segnis ATCC 33393] gi|315476671|gb|EFU67419.1| crossover junction ATP-dependent DNA helicase RuvA [Aggregatibacter segnis ATCC 33393] Length = 204 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 97/205 (47%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + +L+DVQGV Y + P+ + L ++G +LF +R+D L Sbjct: 1 MIGHLTGILMEKQPPEILLDVQGVGYELLLPMTSFYHLPEVGKQTSLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ E +I + + +IPG+ K Sbjct: 61 FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVDEFAYAIEREELSKLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKGK + ++ + + + A++AL+ LGY A Sbjct: 121 AERLLVELKGKFKGVKNNDFFMQADHLPSLSMETIATAEPSNEAVAALIALGYKPVDAEK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V V K Q+IR AL+A Sbjct: 181 MVKKVSK---PALSSEQLIREALKA 202 >gi|225568080|ref|ZP_03777105.1| hypothetical protein CLOHYLEM_04153 [Clostridium hylemonae DSM 15053] gi|225163033|gb|EEG75652.1| hypothetical protein CLOHYLEM_04153 [Clostridium hylemonae DSM 15053] Length = 205 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 2/205 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + + ED V++DV GV Y IY +++S L G + ++++D ++L Sbjct: 1 MISYIRGELAAVEEDKVIVDVGGVGYGIYMSGQSMSLLPSAGREVKIHTYLNVKEDAMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ D F L+ V G+G + +G+LS ++ +L ++I + K I PGI K Sbjct: 61 FGFLTRDDLDIFRLIIGVNGIGPKGGLGILSALSPDDLRFAVISNDVKAIQAAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK K + N A S+ A+ ALV LGYG ++ A Sbjct: 121 AEKLILELKDKLRIEDVLEHAAHGSENTSAAAAASVNEVQSEAVQALVALGYGSTESLKA 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V + + +++ AL+ + Sbjct: 181 VKQV--EIAEHMEVEDVLKSALKHM 203 >gi|86140746|ref|ZP_01059305.1| Holliday junction DNA helicase motor protein [Leeuwenhoekiella blandensis MED217] gi|85832688|gb|EAQ51137.1| Holliday junction DNA helicase motor protein [Leeuwenhoekiella blandensis MED217] Length = 193 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 101/205 (49%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + V+I+ GV Y + + T S L + G+ L+ H+++D L Sbjct: 1 MITFLRGKLIEKNHTDVVIECHGVGYFVNISLHTFSLLPE-GESIMLYTYLHIKEDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F LL SV GVG +A +LS + +++ ++I + K I + GI K Sbjct: 60 YGFAHKSEREIFKLLISVSGVGTSIARTMLSSLEPSQVKQAIATGDVKTIQGVKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + + + + + + A+SAL LG+ + QA Sbjct: 120 AQRVILDLKDKILKVYDI----------NEVSPIADNTNKEEALSALETLGFARKQAEKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 ++++ E A II+LAL+ + Sbjct: 170 CTTIVRDEPQ-ASVETIIKLALKKL 193 >gi|253688206|ref|YP_003017396.1| Holliday junction DNA helicase RuvA [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259495651|sp|C6DFF1|RUVA_PECCP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|251754784|gb|ACT12860.1| Holliday junction DNA helicase RuvA [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 205 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+ GV Y ++ P+ L ++ +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPQVLIEANGVGYEVHMPMTCFYELPELNQEAIIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L V GVG ++A+ +LS ++AT+ V ++ + + ++PG+ K Sbjct: 61 FGFNDKQERALFRELIKVNGVGPKLALAILSGMSATQFVSAVEREEIGALIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMS--CVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + LS + +S + + A +ALV LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLSGDLFNPVSDIPLASPASAESRASDPEAEAAAALVALGYKPQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 + + + E AD +IR ALRA Sbjct: 181 RMISKIARPE---ADCETLIRDALRA 203 >gi|241668355|ref|ZP_04755933.1| Holliday junction DNA helicase RuvA [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876888|ref|ZP_05249598.1| holliday junction DNA helicase ruvA [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842909|gb|EET21323.1| holliday junction DNA helicase ruvA [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 217 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 59/212 (27%), Positives = 105/212 (49%), Gaps = 12/212 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + +LIDV G+ Y ++ P+ T LG+I +L+ +R+D +L Sbjct: 1 MISFIKGTLIEKDPTALLIDVNGLGYEVFVPMTTFYSLGEINSQISLYTHFVVREDAQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +D++ F L V G+GAR A+ +LS + +T L+ I ++ ++A +PGI K Sbjct: 61 YGFKTKVDKKVFQELIKVSGIGARTAIAILSGMDSTTLLHCIENKDYGLLATVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVV---------QQDMSCVNKEQAHICSMPSFAINAISALVNLG 171 A R++ E+ K + +++ + + + V Q S ++ AL+ LG Sbjct: 121 AERLVVEIYDKLLKMANEIYSQSSSTSASVNANSVQHTQTPAAISNSIFSESVDALLALG 180 Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 Y Q A + + ++ IR AL+ Sbjct: 181 YKQKDAEKMIRGTI---GESTTAAEAIRKALQ 209 >gi|208779418|ref|ZP_03246764.1| holliday junction DNA helicase RuvA [Francisella novicida FTG] gi|254372980|ref|ZP_04988469.1| hypothetical protein FTCG_00553 [Francisella tularensis subsp. novicida GA99-3549] gi|151570707|gb|EDN36361.1| hypothetical protein FTCG_00553 [Francisella novicida GA99-3549] gi|208745218|gb|EDZ91516.1| holliday junction DNA helicase RuvA [Francisella novicida FTG] gi|332678321|gb|AEE87450.1| Holliday junction DNA helicase RuvA [Francisella cf. novicida Fx1] Length = 216 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 59/212 (27%), Positives = 103/212 (48%), Gaps = 12/212 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + +LIDV G+ Y ++ P+ T LG I +L+ +R+D +L Sbjct: 1 MISFIKGVLIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQVSLYTHFVVREDAQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +D++ F L V G+GAR A+ +LS + + L+ I ++ ++A +PGI K Sbjct: 61 YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDM---------SCVNKEQAHICSMPSFAINAISALVNLG 171 A R++ E+ K + +++ + S + S ++ AL+ LG Sbjct: 121 AERLVVEIYDKLLKMANEIYAQTSGTTTTSQDSQAQQAPTSAVLANSIFNESVDALLALG 180 Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 Y Q A S + + +++IR AL+ Sbjct: 181 YKQKDAEKMARSAM---GDATTAAEVIRKALQ 209 >gi|33152771|ref|NP_874124.1| Holliday junction DNA helicase motor protein [Haemophilus ducreyi 35000HP] gi|38372436|sp|Q7VKV4|RUVA_HAEDU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|33148995|gb|AAP96513.1| Holliday junction DNA helicase RuvA [Haemophilus ducreyi 35000HP] Length = 201 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 61/204 (29%), Positives = 97/204 (47%), Gaps = 5/204 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G I ++IDVQG+ Y + P+ + L ++G+ T+F +R+D L Sbjct: 1 MIGRLYGKIIEKQPPEMVIDVQGIGYEVLLPMTSFYHLPQVGEEATIFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ + ++ + + +IPG+ K Sbjct: 61 FGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVVQFANAVENEELVKLTKIPGVGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK ++ A S A AL+ LGY A Sbjct: 121 AERLLVELKGKFKGIAQTDFFVEHSHETMVATYEIDAS--EEARDALLALGYKLTDAEKM 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + V K+ A Q+IR AL+A Sbjct: 179 IKKV---HKSGATSEQLIRDALKA 199 >gi|33598084|ref|NP_885727.1| Holliday junction DNA helicase motor protein [Bordetella parapertussis 12822] gi|44888435|sp|Q7W4T9|RUVA_BORPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|33566642|emb|CAE38852.1| holliday junction DNA helicase [Bordetella parapertussis] Length = 190 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 67/205 (32%), Positives = 103/205 (50%), Gaps = 17/205 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + V +DV GV Y I P+ TL L + G TLF +R+D L Sbjct: 1 MIGRITGTLIEKSPPVVCVDVNGVGYEIDVPMSTLYALPETGARVTLFTHLVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L V G+GAR A+ VLS ++ EL ++I LQ + + ++PGI K Sbjct: 61 YGFGSSAERSTFRELIKVTGIGARTALAVLSGLSVAELSQAITLQETGRLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++GK + A + + ++AL+ LGY ++ A Sbjct: 121 AERLLLEMRGKLGA-------------DIGATPHAAGGHQSDILNALLALGYSDKESQAA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + D S+ IRLAL+A+ Sbjct: 168 LKKL----PEGVDVSEGIRLALKAL 188 >gi|291612984|ref|YP_003523141.1| Holliday junction DNA helicase RuvA [Sideroxydans lithotrophicus ES-1] gi|291583096|gb|ADE10754.1| Holliday junction DNA helicase RuvA [Sideroxydans lithotrophicus ES-1] Length = 192 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 107/206 (51%), Gaps = 16/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +++DVQGV Y + P+ T L + + L + +R+D L Sbjct: 1 MIGRLSGTLLEKNPPQIVLDVQGVGYEVDVPMSTFYNLPALHEKVVLHTQLIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ +R F L + GVG ++A+ VLS ++ +L ++ +++ + +IPG+ K Sbjct: 61 FGFLTHEERVAFRQLLKISGVGPKLALSVLSGLSLADLALAVANKDASRLTRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK + A S+PS + + ++AL+ LGY + +A A Sbjct: 121 AERLLLELQGKFAVAGA------------GAMAGSVPSSSSDIVNALLGLGYNEKEADWA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + K+ A + IR AL+ +S Sbjct: 169 AKQLPKE----AGVADGIRQALKLLS 190 >gi|226945719|ref|YP_002800792.1| Holliday junction DNA helicase RuvA [Azotobacter vinelandii DJ] gi|226720646|gb|ACO79817.1| holliday junction DNA helicase RuvA [Azotobacter vinelandii DJ] Length = 204 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 108/205 (52%), Gaps = 5/205 (2%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 IG+++G + ++L++ GV Y + P+ TL L + + TL +R+D L+ Sbjct: 5 IGRLRGILVEKQPPHLLVEANGVGYEVEVPMTTLYRLPSLNEPVTLHTHLVVREDAHLLY 64 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF +R+ F L + GVG ++A+ ++S + ELV + + K + ++PG+ K A Sbjct: 65 GFCERRERELFRELIRLNGVGPKLALALMSSLELDELVRCVQAGDIKALTRVPGVGKKTA 124 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 R++ ELK + + S+ ++ + E + S +A+SALV LG+ +A+ AV Sbjct: 125 ERLLIELKDRFKAWESL--PTVASLTLESNPDIGIASAESDALSALVALGFKPQEASRAV 182 Query: 182 VSVLKKEKNIADDSQIIRLALRAIS 206 +V ++ ++IR ALR ++ Sbjct: 183 AAVQEE---GLSSEELIRRALRGMA 204 >gi|134302038|ref|YP_001122007.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp. tularensis WY96-3418] gi|166230553|sp|A4IY85|RUVA_FRATW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|134049815|gb|ABO46886.1| holliday junction DNA helicase RuvA [Francisella tularensis subsp. tularensis WY96-3418] Length = 216 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 12/212 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + +LIDV G+ Y ++ P+ T LG I +L+ +R+D +L Sbjct: 1 MISFIKGVLIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQVSLYTHFIVREDAQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +D++ F L V G+GAR A+ +LS + + L+ I ++ ++A +PGI K Sbjct: 61 YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDM---------SCVNKEQAHICSMPSFAINAISALVNLG 171 A R++ E+ K + +++ + S + + S ++ AL+ LG Sbjct: 121 AERLVVEIYDKLLKMANEIYAQTSGTTTTSQDSQAQQAPTSVVLANSIFNESVDALLALG 180 Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 Y Q A S + + +++IR AL+ Sbjct: 181 YKQKDAEKMARSAM---GDATTAAEVIRKALQ 209 >gi|307130888|ref|YP_003882904.1| component of RuvABC resolvasome, regulatory subunit [Dickeya dadantii 3937] gi|306528417|gb|ADM98347.1| component of RuvABC resolvasome, regulatory subunit [Dickeya dadantii 3937] Length = 205 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 100/206 (48%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLI+ GV Y ++ P+ L +G +F +R+D L Sbjct: 1 MIGRLRGIVLEKQPPLVLIEASGVGYEVHMPMTCFYELPDLGQEAVIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L V GVG ++A+ +LS ++A + V ++ Q + ++PG+ K Sbjct: 61 FGFNNKQERSLFRELIKVNGVGPKLALAILSGMSAQQFVSAVERQEINALVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAH--ICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + L+ + S + +A A +ALV LGY +A Sbjct: 121 AERLVVEMKDRFKGLNGDLFNAASDIALPEAAGKAEPEADPQAEAEAALVALGYKPQEAG 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 V V + AD +IR ALRA Sbjct: 181 RMVSKVAR---PGADCETLIREALRA 203 >gi|85858586|ref|YP_460788.1| holliday junction DNA helicase [Syntrophus aciditrophicus SB] gi|123725225|sp|Q2LRA9|RUVA_SYNAS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|85721677|gb|ABC76620.1| holliday junction DNA helicase [Syntrophus aciditrophicus SB] Length = 204 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 107/206 (51%), Gaps = 3/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +I+G + V+ID G+ Y + P+ T L +G +LFV T +QD I L Sbjct: 1 MIAQIRGKLILKTVSMVIIDNHGIGYEVMIPLSTYYELPDVGSEVSLFVYTFFKQDSILL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF ++ ++Q F L+ SV G+G R+A+ VLS I ++EL+ +I + + ++PG+ K+ Sbjct: 61 VGFCTENEKQLFKLMISVSGIGPRLAVNVLSGINSSELIHAIANNDLNRLLKVPGLGRKM 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K +S Q + +AISAL+NLGY A A Sbjct: 121 AQRVILELRDKVSGWTSKEQITF---INNKKDAIDQSVMEEDAISALINLGYKSQAAKDA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + V+ + I++ AL+ ++ Sbjct: 178 IDRVISEGGENKSLDVILKKALKVLA 203 >gi|307944538|ref|ZP_07659878.1| holliday junction DNA helicase RuvA [Roseibium sp. TrichSKD4] gi|307772287|gb|EFO31508.1| holliday junction DNA helicase RuvA [Roseibium sp. TrichSKD4] Length = 205 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 86/206 (41%), Positives = 127/206 (61%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ D+V+IDV GV Y ++CP R L L + G+ LF+ET +R+D IRL Sbjct: 1 MIGKLKGTIDSYGGDHVIIDVHGVGYQVHCPSRILQSLPRAGEAAVLFIETVVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+WF LL +VQGVGA+VA+G+L + A+E+ +I L + I + PG+ ++ Sbjct: 61 FGFGDEAEREWFRLLTTVQGVGAKVALGILGILKASEIANAIALSDKATITRAPGVGKRV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI++ELK KA S +SV ++ + + P A+SAL NLGYGQ QA A Sbjct: 121 AERILSELKDKAPSYASVDDATVAVSQSVSDDVAARP--VAEAVSALTNLGYGQPQAAAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V ++ A +IRL L+ ++ Sbjct: 179 VARAVQSAGEDATTETLIRLGLKELA 204 >gi|125972705|ref|YP_001036615.1| Holliday junction DNA helicase subunit RuvA [Clostridium thermocellum ATCC 27405] gi|256004864|ref|ZP_05429838.1| Holliday junction DNA helicase RuvA [Clostridium thermocellum DSM 2360] gi|281416893|ref|ZP_06247913.1| Holliday junction DNA helicase RuvA [Clostridium thermocellum JW20] gi|166230544|sp|A3DBU3|RUVA_CLOTH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|125712930|gb|ABN51422.1| Holliday junction DNA helicase subunit RuvA [Clostridium thermocellum ATCC 27405] gi|255991174|gb|EEU01282.1| Holliday junction DNA helicase RuvA [Clostridium thermocellum DSM 2360] gi|281408295|gb|EFB38553.1| Holliday junction DNA helicase RuvA [Clostridium thermocellum JW20] gi|316941059|gb|ADU75093.1| Holliday junction DNA helicase RuvA [Clostridium thermocellum DSM 1313] Length = 202 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 108/206 (52%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I+G +E D+++++ GV Y I+ + T+S +G+IG ++ ++R+D I L Sbjct: 1 MFAYIRGRLEYKNNDFLIVESNGVGYRIFTSLSTISGIGEIGQEVKVYTYLYVREDVISL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + F LL SV GVG + A+ VLS I+ + ++I + K + + GI KI Sbjct: 61 YGFLTQEELNVFELLISVSGVGPKAAVSVLSAISPSRFSLAVITDDVKTLTKAQGIGKKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K K + + S A+SAL+ LGY +A A Sbjct: 121 AQRIILELKDKIKKEQLTEYAQSEEGGKV---LDTDSSKMAEAVSALMVLGYSPAEANKA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V +V +++ D II+ AL+ ++ Sbjct: 178 VSAVYRED---MDIETIIKNALKGLA 200 >gi|325981222|ref|YP_004293624.1| Holliday junction ATP-dependent DNA helicase ruvA [Nitrosomonas sp. AL212] gi|325530741|gb|ADZ25462.1| Holliday junction ATP-dependent DNA helicase ruvA [Nitrosomonas sp. AL212] Length = 193 Score = 168 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 107/206 (51%), Gaps = 16/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + + VL++VQGV Y I P+ T L IG TL+ +R+D L Sbjct: 1 MIGRLTGKLLEKHPPQVLLEVQGVGYEIDVPMSTFYDLPTIGVEITLYTHLVIREDMHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +RQ F L + G+GAR A+ +LS ++ +L ++ +Q+S + ++PGI K Sbjct: 61 FGFATEPERQTFRQLIKISGIGARTALALLSGLSVADLHHAVSIQDSARLVKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K + +S ++ + ++AL++LGY +A+ A Sbjct: 121 AERLLLELRDKLDLALLSSDRVLSSTSE------------SDILNALLSLGYSDREASWA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + S IR AL+ +S Sbjct: 169 IKQISSNAM----VSDGIRQALQLLS 190 >gi|170746561|ref|YP_001752821.1| Holliday junction DNA helicase RuvA [Methylobacterium radiotolerans JCM 2831] gi|229560103|sp|B1M6A3|RUVA_METRJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|170653083|gb|ACB22138.1| Holliday junction DNA helicase RuvA [Methylobacterium radiotolerans JCM 2831] Length = 205 Score = 168 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 88/206 (42%), Positives = 130/206 (63%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ ED+V++DV GV YI++C RTL + K+G+ L +ETH+R+D IRL Sbjct: 1 MIGKLKGVVDSFGEDFVILDVSGVGYIVHCSARTLQRMPKVGEPAELSIETHVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF SD +R+WF LLQ+VQGVGARVA+GVLS + L +I + I++ PG+ ++ Sbjct: 61 YGFRSDAEREWFRLLQTVQGVGARVALGVLSVLEPEALASAIATGDKGSISRAPGVGPRL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+R+ ELK KA + + V ++ + P +A+SALVNLGY Q QA A Sbjct: 121 AARLAAELKDKAPAFAPVDPALVALAGAVEEGAAPQP--VADAVSALVNLGYPQVQAAAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + LK A+ +IRL LR ++ Sbjct: 179 IAAALKGAGEGAEAKVLIRLGLRELA 204 >gi|187931869|ref|YP_001891854.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp. mediasiatica FSC147] gi|229560033|sp|B2SH67|RUVA_FRATM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|187712778|gb|ACD31075.1| holliday junction DNA helicase, subunit A [Francisella tularensis subsp. mediasiatica FSC147] Length = 216 Score = 168 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 12/212 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + +LIDV G+ Y ++ P+ T LG I +L+ +R+D +L Sbjct: 1 MISFIKGVLIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQVSLYTHFVVREDAQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +D++ F L V G+GAR A+ +LS + + L+ I ++ ++A +PGI K Sbjct: 61 YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDM---------SCVNKEQAHICSMPSFAINAISALVNLG 171 A R++ E+ K + +++ + S + + S ++ AL+ LG Sbjct: 121 AERLVIEIYDKLLKMANEIYAQTSGTTTTSQDSQAQQAPTSVVLANSIFNESVDALLALG 180 Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 Y Q A S + + +++IR AL+ Sbjct: 181 YKQKDAEKMARSAM---GDATTAAEVIRKALQ 209 >gi|89256283|ref|YP_513645.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp. holarctica LVS] gi|115314735|ref|YP_763458.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp. holarctica OSU18] gi|156502349|ref|YP_001428414.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp. holarctica FTNF002-00] gi|167011087|ref|ZP_02276018.1| holliday junction DNA helicase RuvA [Francisella tularensis subsp. holarctica FSC200] gi|254367618|ref|ZP_04983639.1| holliday junction DNA helicase subunit A [Francisella tularensis subsp. holarctica 257] gi|254369266|ref|ZP_04985278.1| holliday junction DNA helicase [Francisella tularensis subsp. holarctica FSC022] gi|290953118|ref|ZP_06557739.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp. holarctica URFT1] gi|295313646|ref|ZP_06804230.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp. holarctica URFT1] gi|122325244|sp|Q0BM63|RUVA_FRATO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|123094517|sp|Q2A3Q7|RUVA_FRATH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230551|sp|A7NBV5|RUVA_FRATF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|89144114|emb|CAJ79371.1| holliday junction DNA helicase, subunit A [Francisella tularensis subsp. holarctica LVS] gi|115129634|gb|ABI82821.1| crossover junction endodeoxyribonuclease [Francisella tularensis subsp. holarctica OSU18] gi|134253429|gb|EBA52523.1| holliday junction DNA helicase subunit A [Francisella tularensis subsp. holarctica 257] gi|156252952|gb|ABU61458.1| holliday junction DNA helicase RuvA [Francisella tularensis subsp. holarctica FTNF002-00] gi|157122216|gb|EDO66356.1| holliday junction DNA helicase [Francisella tularensis subsp. holarctica FSC022] Length = 216 Score = 168 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 12/212 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + +LIDV G+ Y ++ P+ T LG I +L+ +R+D +L Sbjct: 1 MISFIKGVLIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQVSLYTHFVVREDAQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +D++ F L V G+GAR A+ +LS + + L+ I ++ ++A +PGI K Sbjct: 61 YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDM---------SCVNKEQAHICSMPSFAINAISALVNLG 171 A R++ E+ K + +++ + S + + S ++ AL+ LG Sbjct: 121 AERLVVEIYDKLLKMANEIYAQTSGTTTTSQDSQAQQAPTSVVLANSIFNESVDALLALG 180 Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 Y Q A S + + +++IR AL+ Sbjct: 181 YKQKDAEKMARSAM---GDATTAAEVIRKALQ 209 >gi|154252563|ref|YP_001413387.1| Holliday junction DNA helicase RuvA [Parvibaculum lavamentivorans DS-1] gi|171769603|sp|A7HUZ7|RUVA_PARL1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|154156513|gb|ABS63730.1| Holliday junction DNA helicase RuvA [Parvibaculum lavamentivorans DS-1] Length = 205 Score = 168 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 86/206 (41%), Positives = 121/206 (58%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK++G ++ ED+ +IDV GV Y + C RTL L G TL +ET + + IRL Sbjct: 1 MIGKLRGIVDSTGEDWAVIDVGGVGYHVTCSSRTLRNLPPAGGAVTLSIETKVSDEAIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF +D +R+WF LL +VQGVG RVA+GVL + +L +I L + K ++ PG+ K+ Sbjct: 61 IGFTTDSEREWFRLLLAVQGVGTRVALGVLGTLAPADLARAIALDDKKAVSAAPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+TELK K + VN E S P A +A+SALVNLGY Q QA A Sbjct: 121 AARIVTELKDKVPDSMGLSAALEVGVNGEAVSSVSAP--ARDAVSALVNLGYPQAQAMGA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + K+ + A Q+IR L+ ++ Sbjct: 179 VAAAAKRLDDAASTEQLIRHGLKELA 204 >gi|227329529|ref|ZP_03833553.1| Holliday junction DNA helicase RuvA [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 205 Score = 168 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 101/206 (49%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+ GV Y ++ P+ L ++ +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPQVLIEANGVGYEVHMPMTCFYELPELNQEAVIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L V GVG ++A+ +LS ++AT+ V ++ + + ++PG+ K Sbjct: 61 FGFNDKQERALFRELIKVNGVGPKLALAILSGMSATQFVSAVEREEIGALIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMS--CVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + LS + +S + + A +ALV LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLSGDLFNPVSDIPLASPATADSRVGEPEAEAAAALVALGYKPQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 + + + AD +IR ALRA Sbjct: 181 RMISKIAR---PDADCETLIRDALRA 203 >gi|188591242|ref|YP_001795842.1| holliday junction DNA helicase ruva [Cupriavidus taiwanensis LMG 19424] gi|229560026|sp|B2AH73|RUVA_CUPTR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|170938136|emb|CAP63122.1| subunit A of RuvABC Holliday junction resolvasome, regulatory subunit [Cupriavidus taiwanensis LMG 19424] Length = 193 Score = 168 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 104/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L +G TL + +R+D L Sbjct: 1 MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPAVGQPVTLLTQLIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L + G+GAR+A+ VLS ++ EL ++I LQ + + +IPGI K Sbjct: 61 YGFGSAAERNTFRELIKITGIGARMALAVLSGMSVPELAQAITLQEAGRLTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ++ + ++P A++ ++AL+ LGY + +A A Sbjct: 121 AERL-----------LLELKGKLGAELGHAPGTPAVPDSAVDVLNALLALGYSEKEAAAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + V S+ I+LAL+A+S Sbjct: 170 IKQV----PAGTGVSEGIKLALKALS 191 >gi|238788520|ref|ZP_04632313.1| Holliday junction DNA helicase RuvA [Yersinia frederiksenii ATCC 33641] gi|238723433|gb|EEQ15080.1| Holliday junction DNA helicase RuvA [Yersinia frederiksenii ATCC 33641] Length = 194 Score = 168 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 54/194 (27%), Positives = 93/194 (47%), Gaps = 3/194 (1%) Query: 11 GLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQ 70 VL++ GV Y + P+ L +G +F + +R+D L+GF +R Sbjct: 2 EKQPPLVLLETNGVGYEVQLPMTCFYELPDLGQEAIIFTQFVVREDAQLLYGFNDKQERA 61 Query: 71 WFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 F L V GVG ++A+ +LS ++A + V ++ ++ + ++PG+ K A R++ E+K Sbjct: 62 LFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKTAERLVVEMKD 121 Query: 131 KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKN 190 + L+ + + + A A+SALV LGY +A+ V + K Sbjct: 122 RFKGLNGDLFNNTGDIQLPSASQTPDADIEAEAVSALVALGYKPQEASRLVSKIAK---P 178 Query: 191 IADDSQIIRLALRA 204 AD +IR ALRA Sbjct: 179 GADCETLIRDALRA 192 >gi|296447311|ref|ZP_06889239.1| Holliday junction DNA helicase RuvA [Methylosinus trichosporium OB3b] gi|296255176|gb|EFH02275.1| Holliday junction DNA helicase RuvA [Methylosinus trichosporium OB3b] Length = 204 Score = 168 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 90/206 (43%), Positives = 133/206 (64%), Gaps = 3/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ +D+V++DVQGV Y+++C RTL L + G+ +L +ET +R+D IRL Sbjct: 1 MIGKLKGVVDSYGDDFVILDVQGVGYVVHCSTRTLQKLPRAGEAASLAIETQVREDSIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +D +R WF LLQSVQGVGA+VA+ +LS + EL +I Q+ ++A+ G+ K+ Sbjct: 61 FGFSADAERDWFRLLQSVQGVGAKVALAILSILGPGELASAIAGQDKAMVARASGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ ELK KA + +++ D + S P A +AISALVNLGYG+ QA A Sbjct: 121 AARIVAELKDKAPAFAAL---DPALARLSGETEASAPQAAQDAISALVNLGYGRPQAAAA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + LK AD +IR L+ ++ Sbjct: 178 VAASLKALGESADTGALIRRGLKELA 203 >gi|167856020|ref|ZP_02478765.1| holliday junction ATP-dependent DNA helicase RuvA [Haemophilus parasuis 29755] gi|167852859|gb|EDS24128.1| holliday junction ATP-dependent DNA helicase RuvA [Haemophilus parasuis 29755] Length = 202 Score = 168 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 61/203 (30%), Positives = 100/203 (49%), Gaps = 4/203 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G I +++DVQGV Y + P+ + L + + +F +R+D L Sbjct: 1 MIGRLCGRIIEKSPPSMVLDVQGVGYEVLMPMTSFYNLPDLNEDTMIFTHLVIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+ +R F L GVG ++A+ +LS ++ +E + +I + + +IPGI K Sbjct: 61 FGFVQKQERMLFRELIKTNGVGPKLALAILSAMSVSEFMSAIEQEELAKLIKIPGIGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK +L + + P AI AL++LGY A Sbjct: 121 AERLLVELKGKFSTLFHHEISILQPSGNLLSMESMSP--VNEAIDALISLGYKAADAEKM 178 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V V +K + + Q+IR AL+ Sbjct: 179 VKKVNRK--SESTSEQLIREALK 199 >gi|68248920|ref|YP_248032.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae 86-028NP] gi|81336669|sp|Q4QNM5|RUVA_HAEI8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|68057119|gb|AAX87372.1| holliday junction DNA helicase RuvA [Haemophilus influenzae 86-028NP] Length = 204 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L++VQGV Y + P+ + L +IG TLF +R+D L Sbjct: 1 MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ + +I + + +IPG+ K Sbjct: 61 FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKGK + S + + + + S + AISAL+ LGY +A Sbjct: 121 AERLLVELKGKFKGIKQSDFFVESTHIPLSPSIESHSESSSDEAISALIALGYKPAEAEK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V V K E Q+IR AL+A Sbjct: 181 MVKRVAKPE---LTSEQVIREALKA 202 >gi|145634688|ref|ZP_01790397.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae PittAA] gi|145638774|ref|ZP_01794383.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae PittII] gi|148827465|ref|YP_001292218.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae PittGG] gi|260582589|ref|ZP_05850379.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae NT127] gi|166230557|sp|A5UGC9|RUVA_HAEIG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|145268233|gb|EDK08228.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae PittAA] gi|145272369|gb|EDK12277.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae PittII] gi|148718707|gb|ABQ99834.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae PittGG] gi|260094400|gb|EEW78298.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae NT127] gi|301169022|emb|CBW28619.1| component of RuvABC resolvasome, regulatory subunit [Haemophilus influenzae 10810] gi|309750264|gb|ADO80248.1| Holliday junction resolvasome, DNA-binding subunit [Haemophilus influenzae R2866] Length = 204 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L++VQGV Y + P+ + L +IG TLF +R+D L Sbjct: 1 MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ + +I + + +IPG+ K Sbjct: 61 FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKGK + S + + + + S + AISAL+ LGY +A Sbjct: 121 AERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESSSDEAISALIALGYKPAEAEK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V V K E Q+IR AL+A Sbjct: 181 MVKRVAKPE---LTSEQVIREALKA 202 >gi|167759024|ref|ZP_02431151.1| hypothetical protein CLOSCI_01371 [Clostridium scindens ATCC 35704] gi|167663431|gb|EDS07561.1| hypothetical protein CLOSCI_01371 [Clostridium scindens ATCC 35704] Length = 203 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 106/205 (51%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG +E L ED V+IDV G+ Y ++ + + L IG + ++++D ++L Sbjct: 1 MISYLKGTLEALEEDKVVIDVGGIGYGVFMSGQAMGLLPSIGKEVKIHTYLNIKEDAMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ D + F LL V G+G + +GVLS ++ EL +++ + K I Q PGI K Sbjct: 61 YGFLTKDDLEVFKLLIGVNGIGPKGGLGVLSALSPDELRFAVMSNDVKAICQAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ EL+ K + ++ N+ Q NA+ AL LGYG +A A Sbjct: 121 AEKLILELRDKLR--LEDALEHLASENEVQGAAAYQGEVQSNAVQALAALGYGSTEALKA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V + ++++ AL+ + Sbjct: 179 VRQV--DITENMEVEEVLKQALKLM 201 >gi|255020124|ref|ZP_05292194.1| Holliday junction DNA helicase RuvA [Acidithiobacillus caldus ATCC 51756] gi|254970417|gb|EET27909.1| Holliday junction DNA helicase RuvA [Acidithiobacillus caldus ATCC 51756] Length = 191 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 49/206 (23%), Positives = 88/206 (42%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G+I + ++ ++V G+ Y + P+ L G TL +R+D L Sbjct: 1 MIAFLRGHILERHPPWLWLEVNGIGYELEMPLSAFFQLPADGAALTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V G+G +VA+ LS + +L ++ + + + IPG+ + Sbjct: 61 YGFRERAERDIFRQLIKVSGIGGKVALACLSGMDVEQLRAALRDGDVRRLTAIPGVGART 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K + AI+AL +LGY A+ A Sbjct: 121 AERLIVELRDKL-------------ASGSVGATPVAGDPRQEAIAALQSLGYKATDASQA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 L ++IR L+ ++ Sbjct: 168 ----LAGLDPGLSVEELIRQGLKTLA 189 >gi|187479251|ref|YP_787276.1| Holliday junction DNA helicase RuvA [Bordetella avium 197N] gi|123765963|sp|Q2KVY6|RUVA_BORA1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|115423838|emb|CAJ50389.1| holliday junction DNA helicase [Bordetella avium 197N] Length = 190 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 67/206 (32%), Positives = 103/206 (50%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + V +DV G+ Y I P+ TL L G TLF +R+D L Sbjct: 1 MIGRITGTLIEKTPPVVYVDVNGIGYEIDVPMSTLYALPDTGARVTLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+GAR A+ VLS ++ EL ++I LQ S + ++PGI K Sbjct: 61 YGFGTASERAAFRELVKVSGIGARTALAVLSGMSVAELAQAITLQESGRLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++GK + A ++P + ++AL+ LGY + ++ A Sbjct: 121 AERLLLEMRGKLGA-------------DIGATPHAVPDSQSDILNALLALGYSEKESLAA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 LK S IR AL+A++ Sbjct: 168 ----LKTLPEGLGVSDGIRQALKALA 189 >gi|254374431|ref|ZP_04989913.1| holliday junction DNA helicase RuvA [Francisella novicida GA99-3548] gi|151572151|gb|EDN37805.1| holliday junction DNA helicase RuvA [Francisella novicida GA99-3548] Length = 216 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 59/212 (27%), Positives = 103/212 (48%), Gaps = 12/212 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + +LIDV G+ Y ++ P+ T LG I +L+ +R+D +L Sbjct: 1 MISFIKGALIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQVSLYTHFVVREDAQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +D++ F L V G+GAR A+ +LS + + L+ I ++ ++A +PGI K Sbjct: 61 YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDM---------SCVNKEQAHICSMPSFAINAISALVNLG 171 A R++ E+ K + +++ + S + S ++ AL+ LG Sbjct: 121 AERLVVEIYDKLLKMANEIYAQTSGTTTTSQDSQAQQAPTSAVLANSIFNESVDALLALG 180 Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 Y Q A S + + +++IR AL+ Sbjct: 181 YKQKDAEKMARSAM---GDATTAAEVIRKALQ 209 >gi|145631439|ref|ZP_01787209.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae R3021] gi|144982976|gb|EDJ90485.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae R3021] Length = 204 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L++VQGV Y + P+ + L +IG TLF +R+D L Sbjct: 1 MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHFVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ + +I + + +IPG+ K Sbjct: 61 FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKGK + S + + + + S + AISAL+ LGY +A Sbjct: 121 AERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESSSDEAISALIALGYKPAEAEK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V V K E Q+IR AL+A Sbjct: 181 MVKRVAKPE---LTSEQVIREALKA 202 >gi|330991872|ref|ZP_08315821.1| Holliday junction ATP-dependent DNA helicase ruvA [Gluconacetobacter sp. SXCC-1] gi|329760893|gb|EGG77388.1| Holliday junction ATP-dependent DNA helicase ruvA [Gluconacetobacter sp. SXCC-1] Length = 207 Score = 167 bits (424), Expect = 7e-40, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 114/206 (55%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + + D +IDV GV Y++ RTL+ L + + + VET +R+D I L Sbjct: 1 MIAQLRGLLAQVEADRCVIDVGGVGYLVQASSRTLAVLPQPPELALVLVETVVREDAILL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R WF LL +VQGVGA+VA+ +LS + EL+ +I + ++ + G+ ++ Sbjct: 61 YGFAEASERAWFRLLTTVQGVGAKVALAILSVLPPPELMMAIGSGDKTMLTRAGGVGARL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TEL+ K + + + V + S A +A+ AL LG+ + +A Sbjct: 121 AQRIVTELRDKCEGMPTGMVATGGGVPGVTITRPTAHSVAADAVLALSGLGFRRGEAQPV 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V V+++ + D +IR AL+ ++ Sbjct: 181 VERVIERHEGQVDLDIVIRDALKELA 206 >gi|319775819|ref|YP_004138307.1| holliday junction DNA helicase RuvA [Haemophilus influenzae F3047] gi|317450410|emb|CBY86626.1| holliday junction DNA helicase RuvA [Haemophilus influenzae F3047] Length = 204 Score = 167 bits (424), Expect = 7e-40, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 104/205 (50%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L++VQGV Y + P+ + L +IG TLF +R+D L Sbjct: 1 MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ + +I + + +IPG+ K Sbjct: 61 FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKGK + S + + + + S + AISAL+ LGY +A Sbjct: 121 AERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESSSDEAISALIALGYKPAEAEK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V V+K E Q+IR AL+A Sbjct: 181 MVKRVVKPE---LTSEQVIREALKA 202 >gi|118497616|ref|YP_898666.1| holliday junction DNA helicase, subunit A [Francisella tularensis subsp. novicida U112] gi|195536317|ref|ZP_03079324.1| holliday junction DNA helicase RuvA [Francisella tularensis subsp. novicida FTE] gi|166230552|sp|A0Q6P7|RUVA_FRATN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|118423522|gb|ABK89912.1| holliday junction DNA helicase, subunit A [Francisella novicida U112] gi|194372794|gb|EDX27505.1| holliday junction DNA helicase RuvA [Francisella tularensis subsp. novicida FTE] Length = 216 Score = 167 bits (423), Expect = 7e-40, Method: Composition-based stats. Identities = 59/212 (27%), Positives = 103/212 (48%), Gaps = 12/212 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + +LIDV G+ Y ++ P+ T LG I +L+ +R+D +L Sbjct: 1 MISFIKGVLIEKDPTALLIDVNGIGYEVFVPMTTFYTLGDIDSQVSLYTHFVVREDAQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +D++ F L V G+GAR A+ +LS + + L+ I ++ ++A +PGI K Sbjct: 61 YGFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDM---------SCVNKEQAHICSMPSFAINAISALVNLG 171 A R++ E+ K + +++ + S + S ++ AL+ LG Sbjct: 121 AERLVVEIYDKLLKMANEIYAQTSGTTTTSQDSQAQQAPTSAVLANSIFNESVDALLALG 180 Query: 172 YGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 Y Q A S + + +++IR AL+ Sbjct: 181 YKQKDAEKMSRSAM---GDATTAAEVIRKALQ 209 >gi|332285258|ref|YP_004417169.1| Holliday junction DNA helicase motor protein [Pusillimonas sp. T7-7] gi|330429211|gb|AEC20545.1| Holliday junction DNA helicase motor protein [Pusillimonas sp. T7-7] Length = 192 Score = 167 bits (423), Expect = 7e-40, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 103/206 (50%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + V +DV GV Y I P+ TL L G TL+ +R+D L Sbjct: 1 MIGRITGTLIEKTPPIVCVDVGGVGYEIDVPMSTLYDLPDNGATITLYTHLAVREDAHTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS +R F L V G+GAR A+ VLS ++ EL +I Q + ++ ++PGI K Sbjct: 61 YGFLSSKERSAFRALIKVTGIGARTALAVLSGMSVDELANAITQQETGLLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK + ++ + ++AL++LGY + A Sbjct: 121 AERLLLELRGKLGGDLAHGAGTVAAG-------------RDDILNALLSLGYSNSETQAA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 LK D ++ IRLAL++++ Sbjct: 168 ----LKNLPEGVDVAEGIRLALKSLA 189 >gi|325286780|ref|YP_004262570.1| Holliday junction ATP-dependent DNA helicase ruvA [Cellulophaga lytica DSM 7489] gi|324322234|gb|ADY29699.1| Holliday junction ATP-dependent DNA helicase ruvA [Cellulophaga lytica DSM 7489] Length = 193 Score = 167 bits (423), Expect = 7e-40, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 99/205 (48%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + +++I+ GV Y + + TLS + + L+ +++D L Sbjct: 1 MITHLRGKLVEKNPTFLVIECNGVGYFVNISLHTLSKVSDA-ENIQLYTHLQVKEDSHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R+ F LL SV G+G +A +LS ++ ++ ++I + I + GI K Sbjct: 60 FGFAEKSEREIFRLLISVSGIGPSIARTMLSSLSPAQVRDAIAGGDVATIQSVKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + + + + S S + A+SAL LG+ + QA Sbjct: 120 AQRVILDLKDKVLKIYDIDEVSTS----------SNNTNKEEALSALEVLGFARKQAEKT 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V+ ++ II+LAL+ + Sbjct: 170 VDVVVSQDP-TLSVENIIKLALKNL 193 >gi|166031914|ref|ZP_02234743.1| hypothetical protein DORFOR_01615 [Dorea formicigenerans ATCC 27755] gi|166028367|gb|EDR47124.1| hypothetical protein DORFOR_01615 [Dorea formicigenerans ATCC 27755] Length = 203 Score = 167 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 108/205 (52%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + YED V++DV GV Y IY +++S L IG + ++++D ++L Sbjct: 1 MISYIRGELAAQYEDKVIVDVGGVGYGIYMSAQSMSKLPPIGSEVKIHTYLNVKEDSMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ D F LL V G+G + +LS ++ +L +++ + K I+ PGI K Sbjct: 61 FGFLTVDDLNVFKLLIGVSGIGPKGGQAILSVLSPDDLRFAVMADDVKAISSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK K S+ ++ ++ +A + + A+ ALV LGYG +A A Sbjct: 121 AQKLIVELKDKL-SIEDALEHAITEDGALKAQMSTGGEIQSEAVQALVALGYGNTEALKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V + ++++ AL+ + Sbjct: 180 VKQV--EITPDMQVEELLKRALKFM 202 >gi|319941758|ref|ZP_08016080.1| Holliday junction DNA helicase RuvA [Sutterella wadsworthensis 3_1_45B] gi|319804691|gb|EFW01558.1| Holliday junction DNA helicase RuvA [Sutterella wadsworthensis 3_1_45B] Length = 193 Score = 167 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 99/205 (48%), Gaps = 14/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +LIDV GV Y + P+ T L ++G TL +R+D L Sbjct: 1 MIGRLHGKLLEKNPPQILIDVSGVGYEVDVPMSTFCNLPEVGGELTLHTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L + GVG ++A+ +LS IT +L +++ + ++ ++PGI K Sbjct: 61 YGFATLAERAVFRALIKISGVGPKIALALLSGITVDQLKDAVDRGETGLLTKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + A + +AL+ LGY + +A A Sbjct: 121 AERLVLELKGKLAGTGAAT----------AAAAVPTSGARADVAAALIALGYSEREAAAA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 KK + +RLAL+++ Sbjct: 171 ----TKKLPEDCTVNDGLRLALKSL 191 >gi|261365694|ref|ZP_05978577.1| holliday junction DNA helicase RuvA [Neisseria mucosa ATCC 25996] gi|288565789|gb|EFC87349.1| holliday junction DNA helicase RuvA [Neisseria mucosa ATCC 25996] Length = 194 Score = 167 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 99/205 (48%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ L+ + +R+D L Sbjct: 1 MISRLTGRLIEKNPPQIVIDVNGVGYEADVSMQTFYNLPALGETVQLYTQLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L V G+GA+ A+G+LS ++A EL ++ ++ K ++ PGI K Sbjct: 61 FGFATADERATFRQLVKVSGIGAKTALGILSAMSADELARAVADEDIKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK +S + ++ L+ LGY + +A A Sbjct: 121 AERMVLELRGKLVS---------HATADGLFAATPAADETDDIVNTLIALGYNEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + + +RLAL+ + Sbjct: 172 IKGI----PKGTEVGEGVRLALKNL 192 >gi|86131995|ref|ZP_01050591.1| Holliday junction ATP-dependent DNA helicase RuvA [Dokdonia donghaensis MED134] gi|85817329|gb|EAQ38509.1| Holliday junction ATP-dependent DNA helicase RuvA [Dokdonia donghaensis MED134] Length = 193 Score = 167 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 99/205 (48%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + +V++D GV Y I + T LG G+ L+ +++D L Sbjct: 1 MITHLSGRLIEKNPTHVVLDCNGVGYFINISLHTFGQLGD-GEALKLYTHLQVKEDSHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ ++R+ F LL SV G+GA A +LS + ++ ++I + I I GI K Sbjct: 60 YGFMEVMEREIFRLLLSVSGIGASTARTMLSSLEPNQIKQAIASNDVATIQSIKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 + R++ +LK K + + + + + A+SAL LG+ + QA Sbjct: 120 SQRVILDLKDKILKVYDISTE----------SAVQSNTNKEEALSALETLGFARKQAEKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 +++ K++ + A II+ AL+ + Sbjct: 170 CLAITKEKPD-ASVETIIKEALKKL 193 >gi|50121417|ref|YP_050584.1| Holliday junction DNA helicase RuvA [Pectobacterium atrosepticum SCRI1043] gi|81644878|sp|Q6D4A1|RUVA_ERWCT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|49611943|emb|CAG75392.1| holliday junction DNA helicase [Pectobacterium atrosepticum SCRI1043] Length = 205 Score = 167 bits (423), Expect = 9e-40, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 100/206 (48%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+ GV Y ++ P+ L ++ +F +R+D L Sbjct: 1 MIGRLRGIILEKQPPQVLIEANGVGYEVHMPMTCFYELPELNQEAIIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L V GVG ++A+ +LS ++AT+ V ++ + + ++PG+ K Sbjct: 61 FGFNDKQERALFRELIKVNGVGPKLALAILSGMSATQFVSAVEREEIGALIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM--PSFAINAISALVNLGYGQDQAT 178 A R++ E+K + LS + +S + A +ALV LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLSGDLFNSVSDIPLTSPANVDNRVGEPEAEAAAALVALGYKPQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 + + + AD +IR ALRA Sbjct: 181 RMISKIAR---PDADCETLIRDALRA 203 >gi|237654483|ref|YP_002890797.1| Holliday junction DNA helicase RuvA [Thauera sp. MZ1T] gi|237625730|gb|ACR02420.1| Holliday junction DNA helicase RuvA [Thauera sp. MZ1T] Length = 200 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 104/206 (50%), Gaps = 8/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + +L+D GV Y I P+ T L G +L +R+D L Sbjct: 1 MIGRITGTLLEKNPPQILVDAHGVGYEIDVPMSTFYNLPATGGTVSLHTHFVVREDGHFL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +R F L V GVGAR+A+ VLS ++ +L +++ LQ + + +IPGI K Sbjct: 61 FGFATEEERATFRQLLKVSGVGARMALAVLSGLSVNDLAQAVALQEAGRLVKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K M+ A + P + ++AL+ LGY + +A +A Sbjct: 121 AERLLLELRDKLGK----ALPSMTGARLAAAAPGAAPDAKSDILNALLALGYNEREALSA 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + S IR AL+A+S Sbjct: 177 MKGLAEDVG----VSDGIRQALKALS 198 >gi|329123663|ref|ZP_08252223.1| crossover junction ATP-dependent DNA helicase RuvA [Haemophilus aegyptius ATCC 11116] gi|327469862|gb|EGF15327.1| crossover junction ATP-dependent DNA helicase RuvA [Haemophilus aegyptius ATCC 11116] Length = 204 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 104/205 (50%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L++VQGV Y + P+ + L +IG TLF +R+D L Sbjct: 1 MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ + +I + + +IPG+ K Sbjct: 61 FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKGK + S + + + + S + AISAL+ LGY +A Sbjct: 121 AERLLVELKGKFKGVKQSDFFVESTHIRLSPSIESHSESSSDEAISALIALGYKPAEAEK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V V+K E Q+IR AL+A Sbjct: 181 MVKRVVKPE---LTSEQVIREALKA 202 >gi|225410073|ref|ZP_03761262.1| hypothetical protein CLOSTASPAR_05294 [Clostridium asparagiforme DSM 15981] gi|225042421|gb|EEG52667.1| hypothetical protein CLOSTASPAR_05294 [Clostridium asparagiforme DSM 15981] Length = 207 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 65/208 (31%), Positives = 104/208 (50%), Gaps = 4/208 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + + ED ++++ GV I+ P+ L L IG T++ +R+D + L Sbjct: 1 MISYIKGPLTAIEEDVIVVEAGGVGMGIHVPLSVLDRLPGIGREVTVYTYFQVREDAMSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ DR F L V GVG + A+G+LS +T +L +I+ ++K I++ PGI K Sbjct: 61 YGFLNRQDRDMFRQLIGVNGVGPKAALGILSTMTPDDLRMAIVTGDAKAISRAPGIGPKT 120 Query: 121 ASRIMTELKGKAI--SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ +LK K + + SM A A+ ALV LGY +A Sbjct: 121 AQRLILDLKDKISMEEMLGNLALPCDGGASAALGTASMGEAAKEAVQALVALGYSNMEAN 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 AV V + +++ +LR +S Sbjct: 181 KAVKQV--EVTETMTAEDVLKASLRYLS 206 >gi|294141122|ref|YP_003557100.1| Holliday junction DNA helicase RuvA [Shewanella violacea DSS12] gi|293327591|dbj|BAJ02322.1| Holliday junction DNA helicase RuvA [Shewanella violacea DSS12] Length = 205 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 50/207 (24%), Positives = 103/207 (49%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI+V G+ Y + P+ + L ++ ++ +R+D L Sbjct: 1 MIGRLRGLLIEKQAPEILIEVSGLGYEVQMPLTSFYELPELNQEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ +R F LL GVG ++A+ +LS +T+ E V + + + ++PG+ K Sbjct: 61 YGFITKQERALFRLLIKTNGVGPKLALTILSGMTSAEFVACVERDDIATLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQD--MSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E++ K SL + + + +AI+ L+ LGY QA+ Sbjct: 121 AERLLIEMRDKLKSLMEASAGSEREFMLKTNYTPTKIVNTAEEDAIAVLLALGYKSAQAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 +V + K + ++I+ +L+++ Sbjct: 181 KSVSAAYK---DGMTSEELIKSSLKSM 204 >gi|90426276|ref|YP_534646.1| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris BisB18] gi|122995259|sp|Q20X09|RUVA_RHOPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|90108290|gb|ABD90327.1| Holliday junction DNA helicase subunit RuvA [Rhodopseudomonas palustris BisB18] Length = 205 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 95/206 (46%), Positives = 135/206 (65%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ EDYV++DVQGV Y ++C RTL L + G L +ET++R+DQI+L Sbjct: 1 MIGKLKGLIDSYGEDYVILDVQGVGYQVHCSARTLQALPQAGGAAVLSIETYVREDQIKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF SDL+R+WF LLQ+VQGVGA+VA+ VLS + +L +I L++ +A+ G+ K+ Sbjct: 61 FGFRSDLEREWFRLLQTVQGVGAKVALAVLSTLPPADLANAIALRDKAAVARTSGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA + +SV ++ S P +AISALVNLGYGQ QA A Sbjct: 121 AERIVTELKDKAPAFASVDPAVVALSG--ALDERSAPRPVTDAISALVNLGYGQPQAAAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + S + A+ +Q+I+L L+ +S Sbjct: 179 IASASRSAGEGAETAQLIKLGLKELS 204 >gi|163786536|ref|ZP_02180984.1| Holliday junction DNA helicase [Flavobacteriales bacterium ALC-1] gi|159878396|gb|EDP72452.1| Holliday junction DNA helicase [Flavobacteriales bacterium ALC-1] Length = 193 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 98/205 (47%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + V+ID GV Y I + T S + + L+ +R+D L Sbjct: 1 MITHLEGKLVEKNPTDVVIDCNGVGYFINISLHTFSQIPDR-ENLRLYTYLQVREDSHSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R+ F LL SV G+GA A +LS +T ++ E I + +I + GI K Sbjct: 60 YGFSSKTEREIFKLLISVSGIGANTARTMLSSLTPDQVKEGIASGDVALIQSVKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + + + + + + A+SAL LG+ + Q+ Sbjct: 120 AQRVIIDLKDKVLKVYGIDELSL----------IPNNTHKDEALSALDVLGFNKKQSEKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +L+ + + QII+ AL+ + Sbjct: 170 VDRILQTQPDAL-VEQIIKEALKNL 193 >gi|148825408|ref|YP_001290161.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae PittEE] gi|229846401|ref|ZP_04466509.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae 7P49H1] gi|166230556|sp|A5UAH7|RUVA_HAEIE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|148715568|gb|ABQ97778.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae PittEE] gi|229810494|gb|EEP46212.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae 7P49H1] Length = 204 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L++VQGV Y + P+ + L +IG TLF +R+D L Sbjct: 1 MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ + +I + + +IPG+ K Sbjct: 61 FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKGK + S + + + + S + AISAL+ LGY +A Sbjct: 121 AERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESSSDEAISALIALGYKPVEAEK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V V K E Q+IR AL+A Sbjct: 181 MVKRVAKPE---LTSEQVIREALKA 202 >gi|144898113|emb|CAM74977.1| Holliday junction ATP-dependent DNA helicase [Magnetospirillum gryphiswaldense MSR-1] Length = 209 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 84/205 (40%), Positives = 124/205 (60%), Gaps = 2/205 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+KG I+ L +D+ ++DV GV Y+++C RTL L ++G L VETH+R+D I L Sbjct: 1 MIAKLKGLIDSLGDDFTVVDVGGVGYLVFCSGRTLGRL-QVGIAAALHVETHVREDHIHL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL +R WF LL +VQGVGA+VA+ +LS T +L+++I Q+ ++ + G+ K+ Sbjct: 60 YGFLEPGERDWFNLLITVQGVGAKVALAILSVATPEQLLQTIAAQDKVMLTRASGVGPKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA +S + + +AISALVNLGY + +A A Sbjct: 120 ALRILTELKDKAGKMSLGGFASSAGTAAISTPVGD-GGLMEDAISALVNLGYKRLEAFEA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V K+ AD S +IR AL+ + Sbjct: 179 VGIVAKELGEGADSSTLIRHALKRL 203 >gi|146299412|ref|YP_001194003.1| Holliday junction DNA helicase RuvA [Flavobacterium johnsoniae UW101] gi|57236796|gb|AAW49008.1| RuvA [Flavobacterium johnsoniae UW101] gi|146153830|gb|ABQ04684.1| Holliday junction DNA helicase RuvA [Flavobacterium johnsoniae UW101] Length = 193 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 100/205 (48%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + V+ID GV Y + + T S + DF L+ +++D L Sbjct: 1 MIAHLQGKLVEKNPTEVVIDCGGVGYHVNISLHTFSLIPNA-DFIKLYTHLQIKEDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ +R+ F +L SV G+GA +A +LS I +++ +I + VI I GI K Sbjct: 60 YGFVEKSEREIFRMLLSVSGIGAGIARTMLSSIEPRQIINAIASGDVGVIQSIKGIGNKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + L + + + + A+SAL LG+ + + Sbjct: 120 AQRVILDLKEKVLKLYDLDE----------VSVVQNNTNRDEALSALEVLGFVRKTSEKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++K++ A II+ AL+++ Sbjct: 170 VEKIVKEDPE-ATVETIIKKALKSL 193 >gi|134299518|ref|YP_001113014.1| Holliday junction DNA helicase RuvA [Desulfotomaculum reducens MI-1] gi|172044284|sp|A4J536|RUVA_DESRM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|134052218|gb|ABO50189.1| Holliday junction DNA helicase subunit RuvA [Desulfotomaculum reducens MI-1] Length = 199 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 105/206 (50%), Gaps = 10/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + +V+IDV G+ Y + P T L +G LF +R+D I+ Sbjct: 1 MIAYIKGLLAADGPGWVVIDVNGIGYHVSIPSTT--QLPALGHEVKLFTHMSVREDGIQF 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++ F+LL +V GVG +VA+ V+S + + L +I +++ + ++PG+ K Sbjct: 59 FGFAKEDEKECFLLLLNVAGVGPKVALAVVSHLPPSNLRSAIAIEDVNQLVKVPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K +++V + A+ AL+ LGY Q +A A Sbjct: 119 AQRILLELKDKLKGMAAVEHSTL-------QQSVITTGSGDEAVEALLALGYSQGEARDA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V K D S +I++AL+ ++ Sbjct: 172 VKKAQKSAPE-EDLSALIKIALKELA 196 >gi|16272267|ref|NP_438479.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae Rd KW20] gi|260581219|ref|ZP_05849038.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae RdAW] gi|1173330|sp|P44632|RUVA_HAEIN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|1573280|gb|AAC21976.1| Holliday junction DNA helicase (ruvA) [Haemophilus influenzae Rd KW20] gi|260092144|gb|EEW76088.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae RdAW] Length = 204 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 102/204 (50%), Gaps = 4/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L++VQGV Y + P+ + L +IG TLF +R+D L Sbjct: 1 MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ + +I + + +IPG+ K Sbjct: 61 FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKGK + S + + + + S + AISAL+ LGY +A Sbjct: 121 AERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESSSDEAISALIALGYKPVEAEK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALR 203 V V K E Q+IR AL+ Sbjct: 181 MVKRVAKPE---LTSEQVIREALK 201 >gi|238916873|ref|YP_002930390.1| Holliday junction DNA helicase RuvA [Eubacterium eligens ATCC 27750] gi|259495642|sp|C4Z030|RUVA_EUBE2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|238872233|gb|ACR71943.1| Holliday junction DNA helicase RuvA [Eubacterium eligens ATCC 27750] Length = 207 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 106/207 (51%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + + D ++++ G+ Y IY P L +G ++ ++++D+ L Sbjct: 1 MISYIKGELAEILPDVIVVEANGIGYNIYVPGSVPGELPSVGSEVKIYTYMNVKEDECSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ D F +L V G+G + A+G LS ITA +L +++ + I +PGI K Sbjct: 61 FGFLTRDDLSMFKMLICVNGIGPKAALGALSNITADDLRFAVLADDVAAIKALPGIGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMS--CVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A +I+ ELK K L V + +S +++ ++ +A+ ALV+LGY A Sbjct: 121 AQKIIIELKDKL-KLDEVFESALSKNKKADNNSNVSNVMMIRNDAVEALVSLGYSSKDAL 179 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 AV V ++ D +++ AL+ + Sbjct: 180 VAVKEV--EDIENKDSETVLKEALKKL 204 >gi|258514397|ref|YP_003190619.1| Holliday junction DNA helicase RuvA [Desulfotomaculum acetoxidans DSM 771] gi|257778102|gb|ACV61996.1| Holliday junction DNA helicase RuvA [Desulfotomaculum acetoxidans DSM 771] Length = 203 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 105/205 (51%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G I + + V++DV GV Y I+ P S L G+ L +++D ++L Sbjct: 1 MIAFLRGKIVFIEANSVVLDVSGVGYRIFVPASCQSKLPAAGEEMLLLTYLSVKEDSLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ +R+ F++L +V G+G + A+ VLS ++ +L ++ ++ K + ++PGI K Sbjct: 61 YGFIEQQERELFVMLLNVGGIGPKGALSVLSCLSPAQLYLAVAREDIKAVMKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K ++ + + A +A+ AL LGY +A Sbjct: 121 AQRLILELKDKLKGRVQPGEETT------PETVSGSQNEAEDALFALEALGYSVSEAIVV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V VL+ S++++ AL+ + Sbjct: 175 VQEVLRSSSKNISASELLKNALQKL 199 >gi|296132699|ref|YP_003639946.1| Holliday junction DNA helicase RuvA [Thermincola sp. JR] gi|296031277|gb|ADG82045.1| Holliday junction DNA helicase RuvA [Thermincola potens JR] Length = 200 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 104/206 (50%), Gaps = 9/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + EDY++IDV GV Y +Y P + L G T+F ++R+D ++L Sbjct: 2 MISFLRGELNYIGEDYIIIDVHGVGYKVYVPASFIGKLPACGQPVTVFTHLYVREDVMQL 61 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + F +L V G+G +VA+ VLS + A+ ++I+ + V+ Q+PGI K Sbjct: 62 YGFPDREELELFEVLLQVSGIGPKVAVSVLSAVPASSFKQAIVNEQVGVLTQVPGIGKKT 121 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K L Q N A+ AL+ LGY ++A A Sbjct: 122 AQRMILELKDKLGKLPGRGQAPPVSAN--------FAPNTEEAVQALIALGYAPNEARKA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V V+ + + I+ AL ++ Sbjct: 174 VNKVVNTHPELG-VEESIKKALLELA 198 >gi|225012191|ref|ZP_03702628.1| Holliday junction DNA helicase RuvA [Flavobacteria bacterium MS024-2A] gi|225003746|gb|EEG41719.1| Holliday junction DNA helicase RuvA [Flavobacteria bacterium MS024-2A] Length = 193 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 97/205 (47%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +I G + V+ID G+ Y + + T S LG + LF +R+D L Sbjct: 1 MITQIIGRLVEKSPTQVVIDCHGIGYEVNISLNTYSQLGD-DENIKLFTHLQIREDSHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++R F LL SV G+GA +A +LS + ++ +II ++ I I GI +K Sbjct: 60 FGFFTPMERSVFRLLLSVSGIGASIARTMLSSLEPQQIQRAIISEDLNTIKSIKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K ++L + + A+SAL LGY + Q+ Sbjct: 120 AQRVLIELKDKMLNLYEGEEIQSFA----------NNTIKEEALSALEVLGYSRKQSEKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + ++ + +I+ AL + Sbjct: 170 IDNAIQSAPE-SSVEGLIKAALNKL 193 >gi|309972527|gb|ADO95728.1| Holliday junction resolvasome, DNA-binding subunit [Haemophilus influenzae R2846] Length = 204 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 102/205 (49%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L++VQGV Y + P+ + L +IG TLF +R+D L Sbjct: 1 MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ + +I + + +IPG+ K Sbjct: 61 FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKGK + S + + + + S + AISAL+ LGY +A Sbjct: 121 AERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESSSDEAISALIALGYKPVEAEK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V V K Q+IR AL+A Sbjct: 181 MVKRVAK---PALTSEQVIREALKA 202 >gi|323138242|ref|ZP_08073314.1| Holliday junction DNA helicase RuvA [Methylocystis sp. ATCC 49242] gi|322396494|gb|EFX99023.1| Holliday junction DNA helicase RuvA [Methylocystis sp. ATCC 49242] Length = 205 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 89/206 (43%), Positives = 135/206 (65%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ ED+V++DV GV Y+++C RTL L + G+ L +ET +R+D IRL Sbjct: 1 MIGKLKGLIDSYGEDFVILDVNGVGYVVHCSSRTLQKLPRAGEAAALAIETQVREDSIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++++R WF LLQ+VQGVGA+VA+G+LS ++++E+ +I Q+ ++A+ PG+ K+ Sbjct: 61 FGFEAEVERDWFRLLQTVQGVGAKVALGILSILSSSEIASAIATQDKAMVARAPGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ ELK KA + +V + S PS +AISALVNLGYG+ QA A Sbjct: 121 AARIVAELKDKAPAFGAVDPVVAKLAG--EDADASAPSAVRDAISALVNLGYGRPQAAAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + +K A+ +IR LR ++ Sbjct: 179 VAASVKALGEGAETGALIRQGLRELA 204 >gi|332716453|ref|YP_004443919.1| Holliday junction ATP-dependent DNA helicase ruvA [Agrobacterium sp. H13-3] gi|325063138|gb|ADY66828.1| Holliday junction ATP-dependent DNA helicase ruvA [Agrobacterium sp. H13-3] Length = 205 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 98/206 (47%), Positives = 140/206 (67%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG IE + DYVL+DV GVCY+ YC RTLS +G G+ LF+ET++R+DQ+RL Sbjct: 1 MIGKLKGTIEEIGTDYVLVDVHGVCYVAYCSARTLSKIGSAGEAVVLFIETYVREDQLRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLS L+R+WF LLQSVQGVG++VA+ VLS ++ +EL +I LQ+ +I++ PG+ K+ Sbjct: 61 FGFLSALEREWFNLLQSVQGVGSKVALAVLSTLSPSELANAIALQDKVMISRAPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++TEL+ KA + + + + + S P +A+SAL NLGY +DQA A Sbjct: 121 AVRLVTELRNKAPAFAGEASASIGLKQELGEGVASAP--VADAVSALTNLGYSRDQAANA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + LK D +++IRL LR +S Sbjct: 179 VAAALKNGGEGGDSAKLIRLGLRELS 204 >gi|88705605|ref|ZP_01103315.1| Holliday junction DNA helicase ruvA [Congregibacter litoralis KT71] gi|88700118|gb|EAQ97227.1| Holliday junction DNA helicase ruvA [Congregibacter litoralis KT71] Length = 195 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 6/195 (3%) Query: 10 EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69 +L+DV GV Y + P+ TL L +G+ TL +R+D L+GF+S DR Sbjct: 2 LQKQPPEILVDVGGVGYELQVPMTTLFQLPALGEVVTLLTHHAVREDAQTLYGFVSARDR 61 Query: 70 QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 + F L V GVG ++A+ +LS + ++ + + +PG+ K A R++ E++ Sbjct: 62 ELFRHLIKVNGVGPKLALTILSGMDGERFARAVHDDDLSALVALPGVGKKTAERLLIEMR 121 Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189 + + + + + +A ALV LGY +A V V Sbjct: 122 DRVSGWLEPGPGESANLGQ----AGPSSDKLGDAEGALVALGYKPAEAARLVARV--DND 175 Query: 190 NIADDSQIIRLALRA 204 +I+D ++IRLALR+ Sbjct: 176 DISDSEELIRLALRS 190 >gi|311748060|ref|ZP_07721845.1| holliday junction DNA helicase RuvA [Algoriphagus sp. PR1] gi|126575044|gb|EAZ79402.1| holliday junction DNA helicase RuvA [Algoriphagus sp. PR1] Length = 199 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 56/203 (27%), Positives = 100/203 (49%), Gaps = 6/203 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + YVLIDV G+ Y + ++T S + + L H+++D L Sbjct: 1 MIDYLHGKLVFKDPTYVLIDVGGIGYHVKISLQTYSQIKDE-EQIKLLTYLHIKEDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +++ F+LL S+ GVG + +LS ++ E+ +SI+ + I + GI K Sbjct: 60 YGFKNADEKRLFLLLISINGVGPNTGLMILSSLSTEEIEQSILSGDVATIQHVKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K D S + + + + + A+ AL+ LG+ + A Sbjct: 120 AQRIILELKDKVGK-----ATDSSSGDSQVGFLNAHNNLREEALKALITLGFPKTAAEKN 174 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 + +VLKK ++I+ +L+ Sbjct: 175 IRAVLKKTTGEISLEELIKASLK 197 >gi|292670920|ref|ZP_06604346.1| crossover junction endoribonuclease subunit A [Selenomonas noxia ATCC 43541] gi|292647541|gb|EFF65513.1| crossover junction endoribonuclease subunit A [Selenomonas noxia ATCC 43541] Length = 200 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 74/205 (36%), Positives = 110/205 (53%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + + DY +DV V Y ++ +T + L +G+ L++ TH+R+D I L Sbjct: 1 MIGFLRGKVTYTFPDYCFLDVHDVGYRVFVSHQTRNHL-SVGEEVMLYIHTHVREDAILL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S + F L + G+G +VA G+LS ITA E I ++ K I ++PGI K Sbjct: 60 YGFFSQEEYDLFQHLIGISGIGPKVAQGILSAITANEFYRLIHQKDVKAITKLPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K L+S D S + SM A AL+NLG+GQ + Sbjct: 120 AERIILELKDK---LTSSSFDDDSFADHAAGFADSMGDKISEATEALLNLGFGQSE---- 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + SVLKK+ + +IIR AL + Sbjct: 173 IQSVLKKKMDWESTEEIIRYALAEL 197 >gi|254000106|ref|YP_003052169.1| Holliday junction DNA helicase RuvA [Methylovorus sp. SIP3-4] gi|253986785|gb|ACT51642.1| Holliday junction DNA helicase RuvA [Methylovorus sp. SIP3-4] Length = 192 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 104/206 (50%), Gaps = 16/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +I G + V+ID GV Y P+ T L +G+ L + +R+D L Sbjct: 1 MISRISGVLIEKAPPQVVIDCHGVGYECEVPMSTFYNLPALGEKVVLLTQFIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +D +RQ F L V G+GA+ A+ +LS ++ +L +++ LQ + ++ ++PGI K Sbjct: 61 YGFGTDRERQTFRQLLKVNGIGAKSALSILSGLSVDDLAQAVALQETALLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K V+ A S + + ++AL+ LGY + +A A Sbjct: 121 AERLLLELKDKF------------SVDGLTAPAGQPKSASGDVLNALLALGYNEREAMAA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + + IRLAL+++S Sbjct: 169 VKQL----PADVVVADGIRLALKSLS 190 >gi|255066950|ref|ZP_05318805.1| holliday junction DNA helicase RuvA [Neisseria sicca ATCC 29256] gi|255048775|gb|EET44239.1| holliday junction DNA helicase RuvA [Neisseria sicca ATCC 29256] Length = 194 Score = 166 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 99/205 (48%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L +G+ L+ + +R+D L Sbjct: 1 MISRLTGKLIEKNPPQIVIDVNGVGYEADVSMQTFYNLPALGETVQLYTQLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L V G+GA+ A+G+LS ++A EL ++ ++ K ++ PGI K Sbjct: 61 FGFATADERATFRQLVKVSGIGAKTALGILSAMSADELARAVADEDIKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK +S + ++ L+ LGY + +A A Sbjct: 121 AERMVLELRGKLVS---------HAAADGLFAAAPAADETDDIVNTLIALGYNEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + + +RLAL+ + Sbjct: 172 IKGI----PKGTEVGEGVRLALKNL 192 >gi|297183449|gb|ADI19581.1| holliday junction resolvasome, DNA-binding subunit [uncultured Acidobacteria bacterium HF0770_27F21] Length = 192 Score = 166 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 99/206 (48%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + +YV++DV GV Y +Y P+ + +G+IGD L + TH+R D +L Sbjct: 1 MIAALRGLLHEKTPEYVIVDVGGVGYQVYLPLPSFYEIGEIGDEVLLRIHTHVRDDTFKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ F L SV G+G ++A+ +LS + L+ +I+ + ++ IPG+ K Sbjct: 61 YGFKDLPQQRLFERLISVAGIGPKLAVTILSGMDTDLLIGAIVDSDIVRLSTIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ELK K L V + +SAL NLGY A A Sbjct: 121 AERMALELKEKVDDLGLVSSD------------SGPRGIRQDVLSALENLGYRPRDAERA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + V E +++ LR ++ Sbjct: 169 LEKV---EDPADQFEALLKQTLRVLA 191 >gi|291550303|emb|CBL26565.1| Holliday junction DNA helicase subunit RuvA [Ruminococcus torques L2-14] Length = 202 Score = 166 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 106/205 (51%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + + E +++ G+ Y IY +TLS L +G+ + ++R+D ++L Sbjct: 1 MISYIRGELAAVQEQKAIVEAGGIGYGIYMSQQTLSMLPAVGEEVKIHTYLNVREDAMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ D Q F LL V G+G + + +LS ++ EL +++ + K I+ PGI K Sbjct: 61 YGFLTGEDLQVFRLLIGVSGIGPKAGLNILSCLSPDELRFAVLAGDVKTISSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK K S+ V++Q + + + A+ AL LGYG ++ A Sbjct: 121 AEKLILELKDKM-SIEDVLEQAAHGGEQSKEIEATDTGMQAEAVQALTALGYGSAESLRA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V + A ++R AL+ + Sbjct: 180 VKKV---SVDCASVEDLLREALKNL 201 >gi|319896645|ref|YP_004134838.1| holliday junction DNA helicase ruva [Haemophilus influenzae F3031] gi|317432147|emb|CBY80498.1| holliday junction DNA helicase RuvA [Haemophilus influenzae F3031] Length = 204 Score = 166 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L++VQGV Y + P+ + L +IG TLF +R+D L Sbjct: 1 MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ + +I + + +IPG+ K Sbjct: 61 FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKGK + S + + + + S + AISAL+ LGY +A Sbjct: 121 AERLLVELKGKFKGIKQSDFFVESTHIPLSPSIESHSESSSDEAISALIALGYKPAEAEK 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V V K E Q+IR AL+A Sbjct: 181 MVKLVAKPE---LTSEQVIREALKA 202 >gi|197284986|ref|YP_002150858.1| Holliday junction DNA helicase RuvA [Proteus mirabilis HI4320] gi|227355390|ref|ZP_03839791.1| Holliday junction ATP-dependent DNA helicase [Proteus mirabilis ATCC 29906] gi|229560118|sp|B4ETP7|RUVA_PROMH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|194682473|emb|CAR42407.1| Holliday junction ATP-dependent DNA helicase [Proteus mirabilis HI4320] gi|227164614|gb|EEI49485.1| Holliday junction ATP-dependent DNA helicase [Proteus mirabilis ATCC 29906] Length = 207 Score = 166 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 60/208 (28%), Positives = 100/208 (48%), Gaps = 7/208 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG+I+G I VLI+ GV Y I P+ L IG ++ + +R+D Sbjct: 1 MIGRIRGVILEKQPPVVLIEAGNGVGYEINMPMTCFYELPDIGQEAIIYTQFIVREDAQL 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +R F L V GVG ++A+ +LS ++A + V +I ++ + ++PG+ K Sbjct: 61 LYGFNQKQERALFRELIKVNGVGPKLALAILSGMSARQFVTAIENESISSLVKLPGVGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQ---DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ E+K + L+ + + D+ + S A +AL+ LGY + Sbjct: 121 TAERLVVEMKDRFKGLNGDLFEQNGDIELPASASSKAPSAADIEAEASAALIALGYKPQE 180 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRA 204 A + V AD +I+ ALRA Sbjct: 181 AAKMISRVATA---GADSETLIKEALRA 205 >gi|71909671|ref|YP_287258.1| Holliday junction DNA helicase motor protein [Dechloromonas aromatica RCB] gi|90134857|sp|Q478E3|RUVA_DECAR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|71849292|gb|AAZ48788.1| Holliday junction DNA helicase subunit RuvA [Dechloromonas aromatica RCB] Length = 192 Score = 166 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 98/206 (47%), Gaps = 16/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +++DV GV Y + P+ T L G+ L +R+D L Sbjct: 1 MIGRLTGILAEKNPPQIVLDVNGVGYELDVPMSTFYNLPAAGEKTKLLTHFAVREDGHYL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL++ +R F L V G+GAR A+ VLS ++ +L ++ Q + +IPGI K Sbjct: 61 YGFLTEAERFAFRQLLKVSGIGARTALSVLSGLSVGDLAAAVAQQELGRLIKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + ++ + +AL+ LGY + +A +A Sbjct: 121 AERLLLELKGKL------------ADATGVSLHPAVDDSKQDISNALLALGYNEKEAASA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + S IR AL+ +S Sbjct: 169 MKQL----PADVSTSDGIRAALKLLS 190 >gi|83816675|ref|YP_444603.1| Holliday junction DNA helicase RuvA [Salinibacter ruber DSM 13855] gi|294506349|ref|YP_003570407.1| Holliday junction DNA helicase ruvA [Salinibacter ruber M8] gi|123726210|sp|Q2S5C8|RUVA_SALRD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|83758069|gb|ABC46182.1| Holliday junction DNA helicase RuvA [Salinibacter ruber DSM 13855] gi|294342677|emb|CBH23455.1| Holliday junction DNA helicase ruvA [Salinibacter ruber M8] Length = 202 Score = 166 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 5/204 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + D L+DV G+ Y ++ P T L + TL ++R+D L Sbjct: 1 MIDYVSGTLVDKTTDSALVDVNGLGYRVHVPTSTYKRLPDTDEEVTLHTYHYLREDDESL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + V VG ++A+ LS +T TEL + ++ + + QI G+ K Sbjct: 61 YGFATKAERTVFETMTGVSRVGPKLALSALSAMTPTELRDHVMEGDKSRLTQISGVGTKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ + L + + + + AL LG + A + Sbjct: 121 ADRLIVELRDRLADLDVLEDTSPLSGGSDARAEARADA-----LEALTELGLSKADAERS 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + VL+ I +++R AL+A Sbjct: 176 IRQVLRDNAGIQSADELVRRALKA 199 >gi|171464161|ref|YP_001798274.1| Holliday junction DNA helicase RuvA [Polynucleobacter necessarius subsp. necessarius STIR1] gi|229560114|sp|B1XS25|RUVA_POLNS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|171193699|gb|ACB44660.1| Holliday junction DNA helicase RuvA [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 193 Score = 166 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 104/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + ++ +L+D QG+ Y + P+ TL L + G TL +R+D +L Sbjct: 1 MIGRIQGTLVSVHPPRLLVDCQGISYEVDVPMSTLYQLPQAGQKITLLTHFQVREDAQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +R+ F L + GVG+R A+ VLS ++ EL ++I LQ + + Q+PGI + Sbjct: 61 FGFATETEREAFRQLIKISGVGSRTALAVLSGMSVNELAQAIALQEAGRLTQVPGIGKRT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ELKGK V + + + AL+ LGY + +A A Sbjct: 121 AERLCLELKGKLAPDLGVAGGKPQAIET-----------SSEVLQALLALGYSEKEALLA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + S IR+ L+ +S Sbjct: 170 LKQI----PADTSISDGIRMGLKYLS 191 >gi|312113736|ref|YP_004011332.1| Holliday junction DNA helicase RuvA [Rhodomicrobium vannielii ATCC 17100] gi|311218865|gb|ADP70233.1| Holliday junction DNA helicase RuvA [Rhodomicrobium vannielii ATCC 17100] Length = 209 Score = 166 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 86/209 (41%), Positives = 127/209 (60%), Gaps = 4/209 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ + D+ +IDV GV Y + C RTL L K G+ L +ET++R+D I+L Sbjct: 1 MIGKLKGIVDAVGADHAIIDVGGVGYEVACSPRTLGAL-KPGEPVALSIETYVREDAIKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS+ +R WF LLQSVQGVGA+VA+ +L+ + + +L ++I +Q+ + + PG+ K+ Sbjct: 60 YGFLSEAERGWFRLLQSVQGVGAKVALSILATLDSAQLAQAIAMQDRVSVTRAPGVGPKV 119 Query: 121 ASRIMTELKGKAISLSSVV---QQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A RI+ ELK KA L+ V S + PS A A+SALVNLGY QA Sbjct: 120 ALRIVNELKDKAPPLAFSVAAIAAPASGSASAAIPASAAPSPAAEAVSALVNLGYAPLQA 179 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ + L K A +IRL L+ ++ Sbjct: 180 NAAISTALGKAGEDARTEDLIRLGLKDLA 208 >gi|313202065|ref|YP_004040723.1| holliday junction DNA helicase ruva [Methylovorus sp. MP688] gi|312441381|gb|ADQ85487.1| Holliday junction DNA helicase RuvA [Methylovorus sp. MP688] Length = 192 Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 104/206 (50%), Gaps = 16/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +I G + V+ID GV Y P+ T L +G+ L + +R+D L Sbjct: 1 MISRISGVLIEKAPPQVVIDCHGVGYECEVPMSTFYNLPALGEKVVLLTQFIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +D +RQ F L V G+GA+ A+ +LS ++ +L +++ LQ + ++ ++PGI K Sbjct: 61 YGFGTDRERQTFRQLLKVNGIGAKSALSILSGLSVDDLAQAVALQETALLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K V+ A S + + ++AL+ LGY + +A A Sbjct: 121 AERLLLELKDKF------------SVDGLAAPAGQAKSASGDVLNALLALGYNEREAMAA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + + IRLAL+++S Sbjct: 169 VKQL----PADVVVADGIRLALKSLS 190 >gi|292490335|ref|YP_003525774.1| Holliday junction DNA helicase RuvA [Nitrosococcus halophilus Nc4] gi|291578930|gb|ADE13387.1| Holliday junction DNA helicase RuvA [Nitrosococcus halophilus Nc4] Length = 199 Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 94/205 (45%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++L++VQGV Y + P+ T L G L+ +R D L Sbjct: 1 MIGRLRGVLLEKRAPFLLLEVQGVGYELEAPMSTFYVLPDRGAEVILYTHLVVRDDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 + F S+ +R+ F L V GVGA++ + +LS I + ++ + ++PG+ K Sbjct: 61 YAFASEKERELFRNLIRVNGVGAKLGLAILSGIEVESFTRCVQEGDTASLTRLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ + + + S +A+SALV LGY A+ Sbjct: 121 AERLIVEMRDRL------FDGPREEMAGVLPRVGSGQVPTSDAVSALVALGYKSQDASRM 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + +IIR AL+ + Sbjct: 175 VRQL---NTEGLATEEIIRQALQRM 196 >gi|58425878|gb|AAW74915.1| holliday junction binding protein, DNA helicase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 212 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 61/204 (29%), Positives = 95/204 (46%), Gaps = 13/204 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +++IDV GV Y + P+ T L +G LF ++D + L Sbjct: 19 MIGRLRGILAYKQPPWLVIDVGGVGYELEAPMSTFYDLPDVGRDVILFTHYAQKEDSVSL 78 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + +R+ F +Q V G+GA++A+ VLS +T E I + + +IPGI K Sbjct: 79 YGFLREGERRLFRDVQKVTGIGAKIALAVLSGVTVDEFARLITSGDITALTRIPGIGKKT 138 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ +A SS P A AL LGY +A Sbjct: 139 AERMVVELRDRAADFSSGAP----------ITGQLGPDAISEATVALQQLGYKPAEAARM 188 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + +A IR AL+A Sbjct: 189 ARDAGAEGGEVATV---IRKALQA 209 >gi|298293003|ref|YP_003694942.1| Holliday junction DNA helicase RuvA [Starkeya novella DSM 506] gi|296929514|gb|ADH90323.1| Holliday junction DNA helicase RuvA [Starkeya novella DSM 506] Length = 205 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 84/206 (40%), Positives = 133/206 (64%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ ED+V++DV GV Y+++C RTL L G+ TLF+ET +R+D IRL Sbjct: 1 MIGKLKGIVDSYVEDHVILDVHGVGYLVHCSARTLQQLPSPGEAATLFIETFVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++ WF LLQ+VQGVGA+VA+ VLS ++ +EL ++ L + ++A+ G+ K+ Sbjct: 61 YGFASPAEKAWFTLLQNVQGVGAKVALSVLSVLSPSELANAVALGDRAMVARANGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ ELK KA + + + + P +A+SALVNLGY Q QA+ A Sbjct: 121 AARIVAELKDKAPGFADIDPAVAGLAAQIEERHAPAP--VADAVSALVNLGYAQIQASAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + +++ AD +++IRL L+ ++ Sbjct: 179 VAAAMREAGEGADAARLIRLGLKELA 204 >gi|301060127|ref|ZP_07200994.1| Holliday junction DNA helicase RuvA [delta proteobacterium NaphS2] gi|300445639|gb|EFK09537.1| Holliday junction DNA helicase RuvA [delta proteobacterium NaphS2] Length = 200 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 104/206 (50%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + +++ V GV Y ++ P+ T L + L + TH+R+D + L Sbjct: 1 MISYLSGTLFEKSTQSIIVQVGGVGYEVFVPLSTFYTLPEKDGPVNLHIHTHVREDALIL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + L++ F++L SV G+G +++ +LS + A EL+ +I ++ + IPGI K Sbjct: 61 FGFSTKLEKSLFLMLVSVSGIGPKLSANILSGMGAEELLRAIAAGDAPRLQAIPGIGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI ELK +A + S Q S ++ + +SAL+NLGY A A Sbjct: 121 AERIALELKDRAAAFSEDAQMPPSVTSETGTEKA-----MEDTLSALINLGYSAKMARAA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + K+ +I+ +L+ ++ Sbjct: 176 MEKAKMRVKD-KTLEGLIKESLKILA 200 >gi|253997451|ref|YP_003049515.1| Holliday junction DNA helicase RuvA [Methylotenera mobilis JLW8] gi|253984130|gb|ACT48988.1| Holliday junction DNA helicase RuvA [Methylotenera mobilis JLW8] Length = 192 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 100/206 (48%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +LID GV Y P+ T L IGD + +R+D L Sbjct: 1 MIGRLSGTLLEKTPPLILIDCNGVGYECEVPMSTFYNLPAIGDKVVMLTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+GA+ A+ +LS ++ +LV+++ LQ ++ ++PG+ K Sbjct: 61 YGFGTSQERATFRQLLKVNGIGAKSALSILSGLSIDDLVQAVALQEPSMLTRVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + + S + ++AL+ LGY + +A A Sbjct: 121 AERLLLELKDKF-----------TIDGVAAMNEPQTKSATSDVLNALLALGYNEREAVAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + K+ + I+ AL+ +S Sbjct: 170 VKLLDKE----ISVTDGIKQALKLLS 191 >gi|253699567|ref|YP_003020756.1| Holliday junction DNA helicase RuvA [Geobacter sp. M21] gi|259495645|sp|C6E1S9|RUVA_GEOSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|251774417|gb|ACT16998.1| Holliday junction DNA helicase RuvA [Geobacter sp. M21] Length = 199 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 101/205 (49%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + +++++DV GV Y ++ P T L G +L + T +++D I L Sbjct: 1 MIALLTGKLAYKSPEFIILDVNGVGYQVHIPFSTYYTLPAEGGALSLQIHTSVKEDAINL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +++ F LL V GVG ++A G+LS +EL +S++ N ++ IPGI K Sbjct: 61 YGFRTQQEKELFQLLIGVSGVGPKLATGILSNSEPSELADSLVNGNLARLSAIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K L Q + + +SAL+NLGY + A Sbjct: 121 AERLVLELKEKMKKLGLAQPQAGGAT------APAKQEIRDDVLSALINLGYKEAVVQKA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + K A +++ AL+ + Sbjct: 175 LAEL--KVTEDATVELVLKQALKIL 197 >gi|78485238|ref|YP_391163.1| Holliday junction DNA helicase RuvA [Thiomicrospira crunogena XCL-2] gi|123755243|sp|Q31H84|RUVA_THICR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|78363524|gb|ABB41489.1| Holliday junction DNA helicase subunit RuvA [Thiomicrospira crunogena XCL-2] Length = 200 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 59/204 (28%), Positives = 109/204 (53%), Gaps = 7/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + +LI+V GV Y + P+ T +G++GD L H+R+D + L Sbjct: 1 MIGFLSGTLHAKLPPQILINVNGVGYEVEAPMSTFYAIGEVGDEVMLLTHMHVREDAMLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S+L+R F L V G+GA++A+G+LS ++ + V + + ++ + +IPG+ K Sbjct: 61 FGFASELERSLFKELIKVNGIGAKMAIGILSAMSVNDFVGLVDVGDAPALTKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ + + S V+ + + + +A+ AL++LGY QA Sbjct: 121 AERLVIEMRDRLKGWGN---GASSNVSSKTMVSSAPHNQKASAVEALISLGYKTAQADKM 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V +V ++ + I+ AL++ Sbjct: 178 VQAV----ESGLSLEETIKKALQS 197 >gi|222086988|ref|YP_002545522.1| Holliday junction DNA helicase RuvA [Agrobacterium radiobacter K84] gi|254766935|sp|B9J9J0|RUVA_AGRRK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|221724436|gb|ACM27592.1| Holliday junction DNA helicase RuvA [Agrobacterium radiobacter K84] Length = 204 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 97/206 (47%), Positives = 144/206 (69%), Gaps = 3/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG IE + EDY L+DV GVCY+ YC RTLS LG +G+ C LF+ET++R+DQIRL Sbjct: 1 MIGKLKGTIEEIGEDYALVDVHGVCYVAYCSARTLSRLGSVGEACILFIETYVREDQIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF++ L+R+WF LLQ+VQGVGA+VA+ +LS +T +EL +I LQ+ +++ PG+ K+ Sbjct: 61 FGFMAVLEREWFNLLQTVQGVGAKVALALLSTLTPSELANAIALQDRTAVSRAPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK K + + + + K++ P+ +A+SAL NLGY +DQA A Sbjct: 121 AMRIVTELKNKVPAFAG---EATNIGFKQELGEGVAPAPVSDAVSALTNLGYSRDQAANA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + +K + AD +++IRL L+ +S Sbjct: 178 IAAAMKVAGDEADSAKLIRLGLKELS 203 >gi|170739181|ref|YP_001767836.1| Holliday junction DNA helicase RuvA [Methylobacterium sp. 4-46] gi|229560104|sp|B0UA56|RUVA_METS4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|168193455|gb|ACA15402.1| Holliday junction DNA helicase RuvA [Methylobacterium sp. 4-46] Length = 205 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 87/206 (42%), Positives = 128/206 (62%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ ED+V++DV GV Y ++C RTL L G+ L +ET +R+D IRL Sbjct: 1 MIGKLKGVVDSYGEDFVILDVHGVGYEVHCSARTLQRLPPAGEATDLAIETVVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF SD +R+WF LLQ+VQGVG RVA+G+LS + EL +I + +A+ PG+ ++ Sbjct: 61 YGFRSDAEREWFRLLQTVQGVGTRVALGLLSVLEPAELATAIATGDKGAVARAPGVGPRL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+R++ ELK KA + + V + +A P +AISALVNLGY Q QA+ A Sbjct: 121 AARLVAELKDKAPAFAPVDPALVRLAGAVEARTAPQP--VADAISALVNLGYPQAQASAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + L+ A+ +IRL LR ++ Sbjct: 179 VAAALQSAGAEAEAKTLIRLGLRELA 204 >gi|261821379|ref|YP_003259485.1| Holliday junction DNA helicase RuvA [Pectobacterium wasabiae WPP163] gi|261605392|gb|ACX87878.1| Holliday junction DNA helicase RuvA [Pectobacterium wasabiae WPP163] Length = 205 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 104/206 (50%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+ GV Y ++ P+ L ++ +F + +R+D L Sbjct: 1 MIGRLRGIILEKQPPQVLIEANGVGYEVHMPMTCFYELPELNQEAIIFTQFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L V GVG ++A+ +LS ++AT+ V ++ + + ++PG+ K Sbjct: 61 FGFNDKQERALFRELIKVNGVGPKLALAILSGMSATQFVSAVEREEIGALIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMS--CVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + LS + +S + + + + A +ALV LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLSGDLFNPVSDIPLASPASADSRVGEPEVEAAAALVALGYKPQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 + + + AD +IR ALRA Sbjct: 181 RMISKIAR---PDADCETLIRDALRA 203 >gi|15891225|ref|NP_356897.1| Holliday junction DNA helicase motor protein [Agrobacterium tumefaciens str. C58] gi|22001979|sp|Q8U9K5|RUVA_AGRT5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|15159588|gb|AAK89682.1| Holliday junction DNA helicase RuvA [Agrobacterium tumefaciens str. C58] Length = 205 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 96/206 (46%), Positives = 142/206 (68%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG+IE + DYVL+DV GVCY+ YC RTLS +G +G+ LF+ET++R+DQ++L Sbjct: 1 MIGKLKGSIEEIGADYVLVDVHGVCYVAYCSARTLSKIGSVGEAVVLFIETYVREDQLKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+S L+R+WF LLQSVQGVG++VA+ VLS ++ +EL +I LQ+ +I++ PGI K+ Sbjct: 61 FGFVSALEREWFNLLQSVQGVGSKVALAVLSTLSPSELANAIALQDKTMISRAPGIGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++TEL+ KA + + + + + S P +A+SAL NLGY +DQA A Sbjct: 121 AVRLVTELRNKAPAFAGDASASIGLKQELGEGVASAP--VADAVSALTNLGYSRDQAANA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + LK D +++IRL L+ +S Sbjct: 179 VAAALKNGGEGGDSAKLIRLGLKELS 204 >gi|268589737|ref|ZP_06123958.1| holliday junction DNA helicase RuvA [Providencia rettgeri DSM 1131] gi|291314889|gb|EFE55342.1| holliday junction DNA helicase RuvA [Providencia rettgeri DSM 1131] Length = 205 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 106/206 (51%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VL+++QGV Y ++ P+ L +IG +F +R+D L Sbjct: 1 MIGRLRGIVLEKQPPIVLLELQGVGYEVHMPMTCFYELPEIGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V +I + + ++PGI K Sbjct: 61 YGFNDKQERALFKELIKVNGVGPKLALAILSGMSAQQFVSAIEQEAIASLVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN--KEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + L+ + S +N + + +M A +AL+ LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNQNSDINLPSVNSKVPNMADIEAEAAAALIALGYKPQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 V V K +D +IR ALRA Sbjct: 181 RMVSKVAK---PDSDSETLIRDALRA 203 >gi|88801662|ref|ZP_01117190.1| Holliday junction DNA helicase motor protein [Polaribacter irgensii 23-P] gi|88782320|gb|EAR13497.1| Holliday junction DNA helicase motor protein [Polaribacter irgensii 23-P] Length = 193 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 108/205 (52%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + V++D GV Y+++ + T + L + L+ +R+D L Sbjct: 1 MITQVRGRLVEKNPTEVVVDCNGVGYLLHISLNTYAALPA-DENVVLYTHLSVREDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF++ +R F L SV GVG +A +LS +TA E+ ++I +N +I + GI K Sbjct: 60 FGFINKTERAIFKFLISVSGVGPSIARTMLSSMTAEEIQQAIASENVALIQSVKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + + + MS N + A+SAL LG+ + Q+ Sbjct: 120 AQRVIVDLKDKIVKTFDLDEVSMSPSNTNKG----------EALSALEVLGFQRKQSDKL 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +++K+ N A QII+LAL+++ Sbjct: 170 VATIVKEYPN-ATIEQIIKLALKSL 193 >gi|238021644|ref|ZP_04602070.1| hypothetical protein GCWU000324_01546 [Kingella oralis ATCC 51147] gi|237866258|gb|EEP67300.1| hypothetical protein GCWU000324_01546 [Kingella oralis ATCC 51147] Length = 195 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + + IDV G+ Y + ++T L IGD ++ + +R+D L Sbjct: 1 MITHLTGKLAEKHPPQITIDVNGIGYELEVSMQTFYQLPNIGDSLHIYTQLIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L V G+GA+ A+G+LS +A EL +I ++ K ++ PGI K Sbjct: 61 FGFAGKAERATFRQLVKVSGIGAKTALGILSAFSADELAAAIAQEDIKRLSAAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK S + P + + IS L+ LGY + +A A Sbjct: 121 AERMILELRGKLAPTSGEATGLFA--------PAVTPDASEDIISTLLALGYNEREARAA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + D + +RLAL+ + Sbjct: 173 TKGI----PADTDVGEGVRLALKNL 193 >gi|239817626|ref|YP_002946536.1| Holliday junction DNA helicase RuvA [Variovorax paradoxus S110] gi|259495659|sp|C5CM11|RUVA_VARPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|239804203|gb|ACS21270.1| Holliday junction DNA helicase RuvA [Variovorax paradoxus S110] Length = 190 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 94/206 (45%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G + V++D GV Y + P+ T L G+ +L +R+D L Sbjct: 1 MIGKLTGILAERNPPQVVVDCNGVGYEVDVPMSTFYNLPGTGERVSLLTHFVVREDAQIL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L + GVG R A+G+LS ++ EL ++I Q + +IPGI K Sbjct: 61 YGFGTAEERAAFRQLIKISGVGPRTALGLLSGMSVGELSQAITTQELGRLVKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R +++ + + + ALV LGY +A A Sbjct: 121 AER-------------LLLELKGKLGADIGLPAHAATDAQADILQALVALGYSDKEAALA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + ++ A S+ I+LAL+A++ Sbjct: 168 LKAL----PKDATVSEGIKLALKALA 189 >gi|53720506|ref|YP_109492.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei K96243] gi|53726199|ref|YP_103912.1| Holliday junction DNA helicase RuvA [Burkholderia mallei ATCC 23344] gi|67642316|ref|ZP_00441074.1| Holliday junction DNA helicase RuvA [Burkholderia mallei GB8 horse 4] gi|76809765|ref|YP_334777.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 1710b] gi|121600711|ref|YP_991618.1| Holliday junction DNA helicase RuvA [Burkholderia mallei SAVP1] gi|124384917|ref|YP_001027114.1| Holliday junction DNA helicase RuvA [Burkholderia mallei NCTC 10229] gi|126438536|ref|YP_001060376.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 668] gi|126450738|ref|YP_001082059.1| Holliday junction DNA helicase RuvA [Burkholderia mallei NCTC 10247] gi|126453529|ref|YP_001067637.1| Holliday junction DNA helicase motor protein [Burkholderia pseudomallei 1106a] gi|134280414|ref|ZP_01767125.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 305] gi|167000504|ref|ZP_02266316.1| Holliday junction DNA helicase RuvA [Burkholderia mallei PRL-20] gi|167721174|ref|ZP_02404410.1| Holliday junction DNA helicase motor protein [Burkholderia pseudomallei DM98] gi|167740150|ref|ZP_02412924.1| Holliday junction DNA helicase motor protein [Burkholderia pseudomallei 14] gi|167817363|ref|ZP_02449043.1| Holliday junction DNA helicase motor protein [Burkholderia pseudomallei 91] gi|167825771|ref|ZP_02457242.1| Holliday junction DNA helicase motor protein [Burkholderia pseudomallei 9] gi|167895840|ref|ZP_02483242.1| Holliday junction DNA helicase motor protein [Burkholderia pseudomallei 7894] gi|167904231|ref|ZP_02491436.1| Holliday junction DNA helicase motor protein [Burkholderia pseudomallei NCTC 13177] gi|167912490|ref|ZP_02499581.1| Holliday junction DNA helicase motor protein [Burkholderia pseudomallei 112] gi|167920442|ref|ZP_02507533.1| Holliday junction DNA helicase motor protein [Burkholderia pseudomallei BCC215] gi|217421175|ref|ZP_03452680.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 576] gi|226198378|ref|ZP_03793947.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei Pakistan 9] gi|237813764|ref|YP_002898215.1| holliday junction DNA helicase RuvA [Burkholderia pseudomallei MSHR346] gi|242317479|ref|ZP_04816495.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 1106b] gi|254178754|ref|ZP_04885408.1| Holliday junction DNA helicase RuvA [Burkholderia mallei ATCC 10399] gi|254180688|ref|ZP_04887286.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 1655] gi|254191517|ref|ZP_04898020.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei Pasteur 52237] gi|254194815|ref|ZP_04901245.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei S13] gi|254202624|ref|ZP_04908987.1| Holliday junction DNA helicase RuvA [Burkholderia mallei FMH] gi|254207963|ref|ZP_04914313.1| Holliday junction DNA helicase RuvA [Burkholderia mallei JHU] gi|254260441|ref|ZP_04951495.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 1710a] gi|254299226|ref|ZP_04966676.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 406e] gi|254355897|ref|ZP_04972175.1| Holliday junction DNA helicase RuvA [Burkholderia mallei 2002721280] gi|81379105|sp|Q63QX6|RUVA_BURPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|81604343|sp|Q62HA8|RUVA_BURMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|90134634|sp|Q3JNS6|RUVA_BURP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230525|sp|A3MP73|RUVA_BURM7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230526|sp|A2S595|RUVA_BURM9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230527|sp|A1V065|RUVA_BURMS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230528|sp|A3NZ66|RUVA_BURP0 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230529|sp|A3NDF5|RUVA_BURP6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|52210920|emb|CAH36908.1| holliday junction DNA helicase [Burkholderia pseudomallei K96243] gi|52429622|gb|AAU50215.1| Holliday junction DNA helicase RuvA [Burkholderia mallei ATCC 23344] gi|76579218|gb|ABA48693.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 1710b] gi|121229521|gb|ABM52039.1| Holliday junction DNA helicase RuvA [Burkholderia mallei SAVP1] gi|124292937|gb|ABN02206.1| Holliday junction DNA helicase RuvA [Burkholderia mallei NCTC 10229] gi|126218029|gb|ABN81535.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 668] gi|126227171|gb|ABN90711.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 1106a] gi|126243608|gb|ABO06701.1| Holliday junction DNA helicase RuvA [Burkholderia mallei NCTC 10247] gi|134248421|gb|EBA48504.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 305] gi|147746871|gb|EDK53948.1| Holliday junction DNA helicase RuvA [Burkholderia mallei FMH] gi|147751857|gb|EDK58924.1| Holliday junction DNA helicase RuvA [Burkholderia mallei JHU] gi|148024872|gb|EDK83050.1| Holliday junction DNA helicase RuvA [Burkholderia mallei 2002721280] gi|157808883|gb|EDO86053.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 406e] gi|157939188|gb|EDO94858.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei Pasteur 52237] gi|160694668|gb|EDP84676.1| Holliday junction DNA helicase RuvA [Burkholderia mallei ATCC 10399] gi|169651564|gb|EDS84257.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei S13] gi|184211227|gb|EDU08270.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 1655] gi|217396587|gb|EEC36604.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 576] gi|225929561|gb|EEH25579.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei Pakistan 9] gi|237505707|gb|ACQ98025.1| holliday junction DNA helicase RuvA [Burkholderia pseudomallei MSHR346] gi|238523444|gb|EEP86882.1| Holliday junction DNA helicase RuvA [Burkholderia mallei GB8 horse 4] gi|242140718|gb|EES27120.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 1106b] gi|243063559|gb|EES45745.1| Holliday junction DNA helicase RuvA [Burkholderia mallei PRL-20] gi|254219130|gb|EET08514.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 1710a] Length = 193 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 104/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y + P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGTLLEKNPPHILVDCNGVGYEVDVPMSTFYNLPHTGEKVVLLTQLIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L + GVGAR+A+ VLS ++ EL +++ LQ++ + ++PGI K Sbjct: 61 YGFLTPPERSTFRELLKITGVGARMALAVLSGMSVAELSQAVTLQDAARLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ++ + A S A + ++ALV LGY + +A A Sbjct: 121 AERL-----------LLELKGKLGADLGPLAGAASPSDHATDILNALVALGYSEKEALAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +V S+ I+L+L+A+S Sbjct: 170 IKNV----PAGTGVSEGIKLSLKALS 191 >gi|297569179|ref|YP_003690523.1| Holliday junction DNA helicase RuvA [Desulfurivibrio alkaliphilus AHT2] gi|296925094|gb|ADH85904.1| Holliday junction DNA helicase RuvA [Desulfurivibrio alkaliphilus AHT2] Length = 215 Score = 165 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 58/215 (26%), Positives = 100/215 (46%), Gaps = 9/215 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + D +++ V GV Y ++ P L +G+ L+++T +R+D L Sbjct: 1 MIASLQGKLAHKGPDSLVLQVGGVGYEVFLPASRHDRLPAVGEELFLYIQTVVREDSFNL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +++ F LL V GVG R+AM +L+ L +II + + ++PG+ K Sbjct: 61 YGFPDSREKRMFQLLLGVSGVGPRLAMNILAAAEPAALSRAIIAGDIVFLKKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS-------MPSFAINAISALVNLGYG 173 A R+ EL K + + V A S +A SAL+NLGY Sbjct: 121 AERLCLELGDKMEFFPTATTDAGTVVGPGAALSPSSAAAADFNEPSFQDAYSALLNLGYP 180 Query: 174 QDQATTAVVSVLKKEKNIAD--DSQIIRLALRAIS 206 QA A+ + + +++R ALR+++ Sbjct: 181 ASQARAALEGLRSAADVSLELPVEELLRQALRSLA 215 >gi|212711936|ref|ZP_03320064.1| hypothetical protein PROVALCAL_03011 [Providencia alcalifaciens DSM 30120] gi|212685458|gb|EEB44986.1| hypothetical protein PROVALCAL_03011 [Providencia alcalifaciens DSM 30120] Length = 205 Score = 165 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 106/206 (51%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VL+++QGV Y ++ P+ L +IG +F +R+D L Sbjct: 1 MIGRLRGIVLEKQPPIVLLELQGVGYEVHMPMTCFYELPEIGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V +I + + ++PGI K Sbjct: 61 YGFNDKQERALFKELIKVNGVGPKLALAILSGMSAQQFVSAIEQEAISSLVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN--KEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + L+ + +S ++ ++ S A +AL+ LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNSVSDIDLPSVKSQGPSQADIEAEAAAALIALGYKPQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 V V K +D +IR ALRA Sbjct: 181 RMVSKVAK---PDSDSETLIRDALRA 203 >gi|237746839|ref|ZP_04577319.1| holliday junction DNA helicase subunit RuvA [Oxalobacter formigenes HOxBLS] gi|229378190|gb|EEO28281.1| holliday junction DNA helicase subunit RuvA [Oxalobacter formigenes HOxBLS] Length = 193 Score = 165 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 104/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + +L+D QGV Y I P+ T L +G+ TLF +R+D L Sbjct: 1 MIGRIHGTLLQKNPPQLLVDCQGVGYEIDVPMSTFYNLPAVGENVTLFTHLAIREDAHVL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L + G+GAR+A+ +LS ++ E+ +++ LQ++ + +IPGI K Sbjct: 61 YGFGSLDERTLFRQLVRITGIGARIALALLSGLSVAEMAQAVALQDATRLTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + A + +AL+ LGY + + TA Sbjct: 121 AERLLLELKGKFD-----------SASLTAAPSAVSNDSMTDIQNALLALGYSEKETLTA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + S I++AL+ +S Sbjct: 170 IKQI----PADCNVSDGIKMALKTLS 191 >gi|261379647|ref|ZP_05984220.1| holliday junction DNA helicase RuvA [Neisseria subflava NJ9703] gi|284798132|gb|EFC53479.1| holliday junction DNA helicase RuvA [Neisseria subflava NJ9703] Length = 194 Score = 165 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + V+IDV GV Y ++T L +G+ L+ + +R+D L Sbjct: 1 MISRLTGKLIEKNPPQVVIDVNGVGYEADVSMQTFYNLPSVGETVHLYTQLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L V G+GA+ A+G+LS + A EL ++I ++ K ++ PGI K Sbjct: 61 FGFASAEERATFRQLVKVSGIGAKTALGILSTMNADELAQAIAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK +S V+ ++ + + I+ L+ LGY + +A A Sbjct: 121 AERMVLELRGKLVS---------HTVSDGLFAPDAVADESQDIINTLLALGYNEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + +RLAL+ + Sbjct: 172 TKGI----PKGTEVGEGVRLALKNL 192 >gi|320352803|ref|YP_004194142.1| Holliday junction DNA helicase RuvA [Desulfobulbus propionicus DSM 2032] gi|320121305|gb|ADW16851.1| Holliday junction DNA helicase RuvA [Desulfobulbus propionicus DSM 2032] Length = 208 Score = 165 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 60/209 (28%), Positives = 105/209 (50%), Gaps = 6/209 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G ++ + ++DV GV Y + +RT L ++G C L V+T +R+D I L Sbjct: 1 MIASLSGLVQWKGPNMAILDVNGVGYELCISVRTYDALPEVGGTCFLLVQTVVREDAISL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ F+LL +V G+G ++A +LS I L +I ++ + +PG+ K Sbjct: 61 YGFSRKEEKDLFLLLITVSGIGPKLAQTILSGIGVEALCGAITAKDLSQLTALPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ EL K + + + + + +A SAL+NLGY Q A A Sbjct: 121 AQRLCVELGEKVGGIGAGLAIEGTPP---LVAPAGDSQVMADAASALINLGYPQAIAWQA 177 Query: 181 VVSVLKKEKNIAD---DSQIIRLALRAIS 206 + +V ++ D ++IR ALR+++ Sbjct: 178 LRNVEQQLPPGTDAPRVEELIRQALRSLA 206 >gi|284039351|ref|YP_003389281.1| Holliday junction DNA helicase RuvA [Spirosoma linguale DSM 74] gi|283818644|gb|ADB40482.1| Holliday junction DNA helicase RuvA [Spirosoma linguale DSM 74] Length = 198 Score = 165 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 59/204 (28%), Positives = 95/204 (46%), Gaps = 7/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + +V+IDV GV Y ++ ++T + L GD LF+ R+D L Sbjct: 1 MIAYLDGTLSHKEATHVIIDVHGVGYSVHISLQTYAVLPGGGDRIKLFIHHLFREDSQSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F+ L V GVG A+G+LS + +L +I+ +N + + I GI K Sbjct: 61 YGFANADEKSLFLDLIGVSGVGPNTALGMLSAMQPGDLRLAILGENVRAVQAIKGIGAKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL+ K V + +++ALV LG+ + A + Sbjct: 121 AQRIILELRDKMKRAGVVPDGPS------YRQQAAANPVREESLAALVALGFPKPTAEKS 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V LK + +IR ALR Sbjct: 175 VDDALKADP-ALSVEDVIRRALRQ 197 >gi|261343863|ref|ZP_05971508.1| holliday junction DNA helicase RuvA [Providencia rustigianii DSM 4541] gi|282568250|gb|EFB73785.1| holliday junction DNA helicase RuvA [Providencia rustigianii DSM 4541] Length = 205 Score = 165 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 105/206 (50%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VL+++QGV Y ++ P+ L IG +F +R+D L Sbjct: 1 MIGRLRGIVLEKQPPIVLLELQGVGYEVHMPMTCFYELPDIGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V +I + + ++PGI K Sbjct: 61 YGFNDKQERALFKELIKVNGVGPKLALAILSGMSAQQFVSAIEQEAISSLVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN--KEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ E+K + L+ + +S ++ ++ S A +AL+ LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNPISDIDLPSVKSKGPSQADIEAEAAAALIALGYKPQEAS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRA 204 V V K +D +IR ALRA Sbjct: 181 RMVSKVAK---PDSDSETLIRDALRA 203 >gi|313904087|ref|ZP_07837467.1| Holliday junction DNA helicase RuvA [Eubacterium cellulosolvens 6] gi|313471236|gb|EFR66558.1| Holliday junction DNA helicase RuvA [Eubacterium cellulosolvens 6] Length = 203 Score = 165 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 111/205 (54%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG IKG IE + ED V++D G+ + ++ P +L+ + G+ L+ ++QD + L Sbjct: 1 MIGFIKGVIEEITEDSVVVDNNGIGWQVFVPGSSLAGNIRQGEEIKLYTYLSVKQDSLSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ DR+ F+ L V G+G + A+G+LS ++A +L +++ ++ IA+ PGI K Sbjct: 61 FGFLNRDDREVFIRLLDVSGIGPKGALGILSVMSADDLRFAVLSDDAAAIAKAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A + + ELK K L ++ ++ ++ + +A+ ALV LGY +A A Sbjct: 121 AQKAVLELKDKF-KLDDAFEKKLAHEQEKAGAAAAQAGAETDAVQALVALGYSGTEAMQA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V D I++ AL+ + Sbjct: 180 VRKV--GAGEDMDSEAILKAALKYL 202 >gi|119896893|ref|YP_932106.1| Holliday junction DNA helicase RuvA [Azoarcus sp. BH72] gi|166230515|sp|A1K314|RUVA_AZOSB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|119669306|emb|CAL93219.1| holliday junction DNA helicase [Azoarcus sp. BH72] Length = 199 Score = 165 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 100/206 (48%), Gaps = 9/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + +L+D GV Y + P+ T L G +L +R+D L Sbjct: 1 MIGRISGLLLEKNPPQILVDAHGVGYELEVPMSTFYGLPATGTQVSLHTHLAIREDGHFL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +D +R F L V G+GAR A+ VLS ++ ++L +++ LQ + + +IPGI K Sbjct: 61 YGFATDEERTAFRQLLKVSGIGARTALAVLSGLSVSDLAQAVALQEAGRLVKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K V + A P + ++AL+ LGY + +A A Sbjct: 121 AERLLLELRDKLGKALPQV-----AGARLAAVAGGAPDAKSDILNALLALGYNEKEALGA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 +K S IR AL+ +S Sbjct: 176 ----MKGLAEDTGVSDGIRQALKLLS 197 >gi|115526757|ref|YP_783668.1| Holliday junction DNA helicase RuvA [Rhodopseudomonas palustris BisA53] gi|122294484|sp|Q07H96|RUVA_RHOP5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|115520704|gb|ABJ08688.1| Holliday junction DNA helicase subunit RuvA [Rhodopseudomonas palustris BisA53] Length = 205 Score = 165 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 94/206 (45%), Positives = 136/206 (66%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ EDYV++DVQGV Y ++C RTL L + G+ L +ET++R+DQI+L Sbjct: 1 MIGKLKGLIDSYGEDYVILDVQGVGYQVHCASRTLQALPQAGEAAVLSIETYVREDQIKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF SDL+R+WF LLQ+VQGVGA+VA+ VLS + ++L ++I L++ +A+ PG+ K+ Sbjct: 61 FGFRSDLEREWFRLLQTVQGVGAKVALSVLSTLPPSDLADAIALRDKAAVARTPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA +SV + P +AISALVNLGYGQ QA A Sbjct: 121 AERIVTELKDKAPGFASVDPAVAHLSGAIEERSAPRP--VADAISALVNLGYGQPQAAAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + + A +Q+I+L L+ +S Sbjct: 179 IAAAARSAGDAAQTAQLIKLGLKELS 204 >gi|110636455|ref|YP_676662.1| Holliday junction DNA helicase [Cytophaga hutchinsonii ATCC 33406] gi|123354887|sp|Q11Z44|RUVA_CYTH3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|110279136|gb|ABG57322.1| Holliday junction DNA helicase subunit RuvA [Cytophaga hutchinsonii ATCC 33406] Length = 199 Score = 165 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 60/203 (29%), Positives = 102/203 (50%), Gaps = 6/203 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + +V++DVQG+ Y I + T S L + + + H+++D L Sbjct: 1 MIAYIEGKLAHKDPTFVVVDVQGIGYHIRVSLHTFSQLKDL-ERVKIHTFLHIKEDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++++ F+ L S+ G+G A+ VLS + EL E+I ++ K I + GI +K Sbjct: 60 FGFADLMEKEMFLHLTSISGIGPGTALVVLSSMNPIELKEAIAREDVKTIQSVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + + D +Q S S A++AL+ LG+ + A Sbjct: 120 AQRVILELKDKMKKDALLAGSD-----SKQNFSVSHNSIRSEALTALITLGFTKTVAEKN 174 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 + +LK N +I+ AL+ Sbjct: 175 LDLILKGNSNSFTLEDLIKQALK 197 >gi|94309369|ref|YP_582579.1| Holliday junction DNA helicase RuvA [Cupriavidus metallidurans CH34] gi|123384032|sp|Q1LRB6|RUVA_RALME RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|93353221|gb|ABF07310.1| component of RuvABC resolvasome, regulatory subunit [Cupriavidus metallidurans CH34] Length = 193 Score = 165 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 101/206 (49%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L IG TL + +R+D L Sbjct: 1 MIGRIAGTLLEKNPPHLLVDCHGVGYEIDVPMSTFYNLPAIGHPVTLLTQQIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L + GVGAR+A+ VLS ++ EL +++ +Q + + +IPGI K Sbjct: 61 FGFATATERNTFRELIKITGVGARMALAVLSGLSVPELAQAVTMQEAGRLTKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ++ + + A++ ++AL+ LGY + +A A Sbjct: 121 AERL-----------LLELKGKLGADLGHAPGATPLADSAVDILNALLALGYSEKEAAQA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + V S I+LAL+A+S Sbjct: 170 IKQV----PAGTGVSDGIKLALKALS 191 >gi|297181902|gb|ADI18079.1| holliday junction resolvasome, DNA-binding subunit [uncultured Acidobacteriales bacterium HF0200_23L05] Length = 198 Score = 165 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 102/206 (49%), Gaps = 9/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + +++D+ GV Y + P+ T LG++G L + TH+R+D + L Sbjct: 1 MIATLHGVLTEKNPSRLVVDISGVGYEVSVPLSTFYALGELGAEVDLRIHTHVREDALSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + L+ F L ++ GVG R+A+ VLS + +L+ +I + + IPG+ K Sbjct: 61 FGFATQLEIDLFGRLIAISGVGPRLALAVLSGLEPPDLLRAIQDSDIVRLQGIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI ELK K S + N + + +SAL+NLGY + A A Sbjct: 121 AERISLELKDKLPSNVLTEGETKDFKNGTE-------QVRRDVMSALLNLGYHRPLAERA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V VL + + +RLALR ++ Sbjct: 174 VKEVLT--GEVHTFEETLRLALRELA 197 >gi|241760730|ref|ZP_04758822.1| holliday junction DNA helicase RuvA [Neisseria flavescens SK114] gi|241318911|gb|EER55437.1| holliday junction DNA helicase RuvA [Neisseria flavescens SK114] Length = 194 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + V+IDV GV Y ++T L +G+ L+ + +R+D L Sbjct: 1 MISRLTGKLIEKNPPQVVIDVNGVGYEADVSMQTFYNLPSVGEAVHLYTQLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L V G+GA+ A+G+LS + A EL ++I ++ K ++ PGI K Sbjct: 61 FGFASAEERATFRQLVKVSGIGAKTALGILSAMNADELAQAIAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK +S V+ ++ + + I+ L+ LGY + +A A Sbjct: 121 AERMVLELRGKLVS---------HTVSDGLFAPDAVADESQDIINTLLALGYNEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + +RLAL+ + Sbjct: 172 AKGI----PKGTEVGEGVRLALKNL 192 >gi|157371017|ref|YP_001479006.1| Holliday junction DNA helicase RuvA [Serratia proteamaculans 568] gi|167012663|sp|A8GFI8|RUVA_SERP5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|157322781|gb|ABV41878.1| Holliday junction DNA helicase RuvA [Serratia proteamaculans 568] Length = 203 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 60/204 (29%), Positives = 103/204 (50%), Gaps = 3/204 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L ++G +F + +R+D L Sbjct: 1 MIGRLRGYILEKQPPLVLLEANGVGYEVHMPMTCFYELPELGQEAIVFTQFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V ++ + + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAVEREEITSLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + L+ + + S + A + A SALV LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNSSEITLPTAAQAAELDAEAEAASALVALGYKPQEASRM 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V + K AD +IR ALRA Sbjct: 181 VSKIAK---PGADCETLIRDALRA 201 >gi|255291934|dbj|BAH90422.1| Holliday junction DNA helicase RuvA [uncultured bacterium] Length = 190 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 93/206 (45%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + V+ID GV Y + P+ + L +G TL +R+D L Sbjct: 1 MIGHLRGQLAARNPPEVVIDCGGVGYEVLVPMSSFYNLPALGQEVTLLTHLVVREDAQTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L V GVG R A+ +LS ++A EL +++ Q S + ++PGI K Sbjct: 61 YGFGSAAERATFRELIKVSGVGPRTALALLSGMSAAELAQAVSAQESGRLTKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R +++ + + AL+ LGY +A A Sbjct: 121 AER-------------LLLELKGKLGADLGPQAAPASDAQGDILQALLALGYNDREAAAA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + ++ S+ I+LAL+A++ Sbjct: 168 LKAL----PQDVGVSEGIKLALKALA 189 >gi|319638740|ref|ZP_07993499.1| Holliday junction ATP-dependent DNA helicase ruvA [Neisseria mucosa C102] gi|317399981|gb|EFV80643.1| Holliday junction ATP-dependent DNA helicase ruvA [Neisseria mucosa C102] Length = 194 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + V+IDV GV Y ++T L +G+ L+ + +R+D L Sbjct: 1 MISRLTGKLIEKNPPQVVIDVNGVGYEADVSMQTFYNLPSVGETVHLYTQLVIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L V G+GA+ A+G+LS + A EL +++ ++ K ++ PGI K Sbjct: 61 FGFASAEERATFRQLVKVSGIGAKTALGILSAMNADELAQAVAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK IS V+ ++ + + I+ L+ LGY + +A A Sbjct: 121 AERMVLELRGKLIS---------HTVSDGLFAPDAVADKSQDIINTLLALGYNEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + +RLAL+ + Sbjct: 172 TKGI----PKGTEVGEGVRLALKNL 192 >gi|317048520|ref|YP_004116168.1| Holliday junction DNA helicase RuvA [Pantoea sp. At-9b] gi|316950137|gb|ADU69612.1| Holliday junction DNA helicase RuvA [Pantoea sp. At-9b] Length = 204 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++GNI VLI+ GV Y ++ P+ L ++ +F + +R+D L Sbjct: 1 MIGRLRGNILEKQPPLVLIEAHGVGYEVHMPMTCFYELPELNQEAIIFTQFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L V GVG ++A+ +LS ++A + V ++ + V+ ++PG+ K Sbjct: 61 FGFNSKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVEKEEIAVLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVV-QQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + + + D + + A++ALV LGY +A+ Sbjct: 121 AERLVVEMKDRFKGMHGDLFGGDNAFTLTTPSAAPENNDAEAEAVAALVALGYKPQEASR 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V + + AD +IR ALRA Sbjct: 181 MVSKIGR---PDADCETLIREALRA 202 >gi|53804471|ref|YP_113686.1| Holliday junction DNA helicase RuvA [Methylococcus capsulatus str. Bath] gi|81682299|sp|Q609L1|RUVA_METCA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|53758232|gb|AAU92523.1| Holliday junction DNA helicase RuvA [Methylococcus capsulatus str. Bath] Length = 201 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 100/204 (49%), Gaps = 6/204 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG I+G + +LIDVQG+ Y + P+ T L +IG L+ +R+D L Sbjct: 1 MIGFIRGLLVAKRAPSLLIDVQGLGYELDAPMSTFYNLPEIGAEVRLYTHLQIREDAHSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +R F L V G+GA++A+ +LS I+ + + Q+S + ++PGI K Sbjct: 61 FGFGTEAERGLFRSLIRVSGIGAKLALAILSGISVDDFRACVERQDSARLVRLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ + L V A A A+SAL+ LG+ +A T Sbjct: 121 AERLIIELRDR---LDIGVPSLAPASFAGGAAPLPAADPADEAVSALIALGFKPQEANTL 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V ++ +IR AL++ Sbjct: 178 VA---RQAAEGRSAEDLIRAALQS 198 >gi|300112852|ref|YP_003759427.1| Holliday junction DNA helicase RuvA [Nitrosococcus watsonii C-113] gi|299538789|gb|ADJ27106.1| Holliday junction DNA helicase RuvA [Nitrosococcus watsonii C-113] Length = 202 Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 100/205 (48%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++L+DVQGV Y + P+ T L +G L+ +R D L Sbjct: 1 MIGRLRGILLEKRAPFLLLDVQGVGYELEAPLSTFYVLPAMGAEVILYTHLVVRDDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 + F S+ +R F L V GVGA++ +G+LS I A + ++ + ++PGI K Sbjct: 61 YAFASEKERGLFRSLIRVNGVGAKLGLGILSGIEAESFTRCVQEGDTVSLTRLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ + + + ++ + + A+SALV LGY + A+ Sbjct: 121 AERLIIEMRDRLL---DRPESRIAEMCSDTVDGSVPAGTVAEAVSALVALGYKPNDASRT 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + + +IIR +L+ + Sbjct: 178 VRRL---DTEGLTTEEIIRRSLQRM 199 >gi|295091401|emb|CBK77508.1| Holliday junction DNA helicase subunit RuvA [Clostridium cf. saccharolyticum K10] Length = 248 Score = 164 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 100/206 (48%), Gaps = 3/206 (1%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 I I+G + + +++ G+ Y I+ P+ L L +G ++ +R+D + L+ Sbjct: 43 ISYIRGILAEKMDGAAVVEAGGIGYRIFMPLSALELLPAVGQEAVVYTYFQVREDAMSLY 102 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GFL+ DR+ F L V G+G + A+G+L + +L +I+ + K I++ PGI K A Sbjct: 103 GFLNRQDREMFRQLIGVNGIGPKAALGLLGALRPDDLRLAILTGDVKAISRAPGIGAKTA 162 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS-MPSFAINAISALVNLGYGQDQATTA 180 RI+ +LK K + S + S A A+ ALV LGY +A+ A Sbjct: 163 QRIILDLKDKVSAEEMFPSVTASDGGAKAPEAASLTAEAAREAVDALVALGYSNLEASKA 222 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V V + D +++ +L+ ++ Sbjct: 223 VKQV--EVTEEMDAEAVLKASLKYLA 246 >gi|149927724|ref|ZP_01915976.1| Holliday junction DNA helicase motor protein [Limnobacter sp. MED105] gi|149823550|gb|EDM82780.1| Holliday junction DNA helicase motor protein [Limnobacter sp. MED105] Length = 196 Score = 164 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 99/206 (48%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++KG + ++L+DVQGV Y + P+ TL L +I CTL +R+D L Sbjct: 1 MIGRLKGTLLEKNAPWILLDVQGVGYELQVPMSTLFNLPEINGSCTLLTHLVVREDAHTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F L V G+G R A+ +LS I+ + + ++ Q + + +IPGI K Sbjct: 61 YGFQNIAEKNLFKTLIKVSGIGPRTALAILSSISTNDFLLAVQSQETARLVKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKG+ ++L + + AL LGY +A A Sbjct: 121 AERLLLELKGQIVALGGTA--------NIAEGMPLPIGNQSEIVQALCALGYSDKEAALA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 K + ++LALR +S Sbjct: 173 ----CKGLPEGTSVTDGLKLALRNLS 194 >gi|302035797|ref|YP_003796119.1| holliday junction DNA helicase RuvA [Candidatus Nitrospira defluvii] gi|300603861|emb|CBK40193.1| Holliday junction DNA helicase RuvA [Candidatus Nitrospira defluvii] Length = 202 Score = 164 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 102/206 (49%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + V +DV GV Y + P+ T L + TL + TH+R+D I+L Sbjct: 1 MIALLTGLMAFKAPSQVTLDVHGVGYEVLIPLSTYYSLPNQHESVTLSIHTHVREDAIQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +++ F+LL + G+G ++ + VLS ++ +L +I + + + + GI K Sbjct: 61 YGFLTTAEKEAFLLLTGISGIGPKLGLSVLSTLSVRDLFSAIQAGDIEKLGTVSGIGKKS 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI ELK K L +Q S + +A+SALVNLGY Q A Sbjct: 121 AARIALELKDKVARLYPAGEQSTSGSGQ------PAHPLYDDALSALVNLGYRQPDVKEA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + K +IR AL+ ++ Sbjct: 175 LKRIEKSGAMAQGLEGVIREALKDLA 200 >gi|197119680|ref|YP_002140107.1| Holliday junction DNA helicase RuvA [Geobacter bemidjiensis Bem] gi|226698732|sp|B5EAH2|RUVA_GEOBB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|197089040|gb|ACH40311.1| Holliday junction DNA helicase RuvA [Geobacter bemidjiensis Bem] Length = 199 Score = 164 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 101/205 (49%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + +++++DV GV Y ++ P T L G +L + T +++D I L Sbjct: 1 MIALLTGKLAYKSPEFIILDVNGVGYQVHIPFSTYYTLPVEGGALSLQIHTSVKEDAINL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +++ F LL V GVG ++A G+LS +EL +S++ N ++ IPGI K Sbjct: 61 YGFRTQQEKELFQLLIGVSGVGPKLATGILSNSEPSELADSLVNGNLARLSAIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K L Q + + +SAL+NLGY + A Sbjct: 121 AERLVLELKEKMKKLGLAQPQAGGTT------APAKQEIRDDVLSALINLGYKEAVVQKA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + K A +++ AL+ + Sbjct: 175 LAEL--KVTEDATVELVLKQALKIL 197 >gi|84687718|ref|ZP_01015591.1| Holliday junction DNA helicase motor protein [Maritimibacter alkaliphilus HTCC2654] gi|84664301|gb|EAQ10792.1| Holliday junction DNA helicase motor protein [Rhodobacterales bacterium HTCC2654] Length = 222 Score = 164 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 70/220 (31%), Positives = 121/220 (55%), Gaps = 15/220 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G I+ +D+VLIDV+GV YI++ RTL+ L G+ L+ + +R+D ++L Sbjct: 1 MIGKLSGRIDYKGDDHVLIDVRGVGYIVHVSDRTLAGLPGPGEAVALYTDMIVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF S ++++WF LL +VQG+GA+ A +L + A + +I L + + G+ K Sbjct: 61 HGFTSLVEKEWFRLLMTVQGIGAKAATAILGTLGADGVSRAIALGDWNAVKAAKGLGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKE--------------QAHICSMPSFAINAISA 166 A R++ ELK KA ++ ++ ++ +A A+SA Sbjct: 121 AQRVVNELKDKAPTIMAMGAGQTVSAPEDVLVESDATPVAAAPRAAPKPANMAQPEALSA 180 Query: 167 LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 L NLGYG +A +AV + L + ++ D +++IR AL+ ++ Sbjct: 181 LANLGYGPGEAASAVATALGDDPDL-DTAKLIRAALKLLA 219 >gi|312797266|ref|YP_004030188.1| Holliday junction DNA helicase ruvA [Burkholderia rhizoxinica HKI 454] gi|312169041|emb|CBW76044.1| Holliday junction DNA helicase ruvA [Burkholderia rhizoxinica HKI 454] Length = 193 Score = 164 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 105/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y + P+ T L GD TL + +R+D L Sbjct: 1 MIGRIAGTLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPGTGDKITLLTQLIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +RQ F L + G+GAR+A+ VLS ++ ++L +++ Q++ + ++PGI K Sbjct: 61 YGFLTQQERQTFRELLKISGIGARMALAVLSGMSVSDLAQTVTQQDTARLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ++ + A S A + + AL++LGY + +A A Sbjct: 121 AERL-----------LLELKGKLGADIGAAASAASSSDHAPDILHALLSLGYSEKEALAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +V S I+LAL+A+S Sbjct: 170 IKNV----PAGTGVSDGIKLALKALS 191 >gi|238898994|ref|YP_002924676.1| Holliday junction helicase, subunit A [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259495647|sp|C4K7I5|RUVA_HAMD5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229466754|gb|ACQ68528.1| Holliday junction helicase, subunit A [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 204 Score = 164 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 104/205 (50%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++KG I ++L+D+QG+ Y I P+ L ++G +F +R+D L Sbjct: 1 MISRMKGIILEKQPPWILLDIQGMGYDIQLPMTCFYQLPELGQEAIIFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++ + +LS +++ E + ++ ++ + ++PG+ K Sbjct: 61 YGFHHPKERAMFSELIKVNGVGPKLGLAILSGMSSEEFICALEKEDISNLIKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC-SMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + +L+ + + + S S AISAL++LGY +A Sbjct: 121 AERLLVEMKDRIKNLNKNLFKSTADHMLSSVSTDLSAKSAEAEAISALISLGYKPQEAAQ 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + ++ + D +I+ ALR+ Sbjct: 181 LIKNIAQ---PDLDSQALIKHALRS 202 >gi|225011142|ref|ZP_03701604.1| Holliday junction DNA helicase RuvA [Flavobacteria bacterium MS024-3C] gi|225004704|gb|EEG42664.1| Holliday junction DNA helicase RuvA [Flavobacteria bacterium MS024-3C] Length = 193 Score = 164 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 98/205 (47%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + ++++ GV Y+++ + T S L + +++ +++D L Sbjct: 1 MITHLRGKLVEKNPTEIVVECGGVGYLVHISLHTYSLLPSE-EAVSIYTHLQVKEDSHSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ +R F LL SV G+GA A +LS ++ EL ++I N I + GI +K Sbjct: 60 YGFMEVSERAIFRLLISVSGIGANTARTMLSSLSPEELRDAIAASNVGTIQSVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + + + + + A+SAL LG+ + Q+ Sbjct: 120 AQRVIIELKDKILKIYDLEE----------LSTPLDNTNKEEALSALEVLGFARKQSEKM 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +LK ++ II+ L+ + Sbjct: 170 VEKILKASPSL-SVEDIIKQTLKGL 193 >gi|150026160|ref|YP_001296986.1| Holliday junction DNA helicase RuvA [Flavobacterium psychrophilum JIP02/86] gi|166230550|sp|A6H1G0|RUVA_FLAPJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|149772701|emb|CAL44184.1| Holliday junction DNA helicase RuvA [Flavobacterium psychrophilum JIP02/86] Length = 193 Score = 164 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + V+ID GV Y + + T L DF LF +++D L Sbjct: 1 MIAHIQGKLVEKSPTEVVIDCNGVGYHVNISLHTYGLLPTT-DFVKLFTHLIIKEDSHSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +++ F LL SV G+GA +A +LS I +++ +I + I I GI +K Sbjct: 60 YGFAEKSEKEIFKLLISVSGIGANIARTMLSSIEPKQIINAIGSGDVGTIQSIKGIGVKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R + +LK K + L + +Q I + A+SAL LG+ + A Sbjct: 120 AQRTIIDLKEKVLKLYDL----------DQVSISQSNTNKDEALSALEVLGFIRKSAEKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ + A II+ AL+ + Sbjct: 170 VEKIVATMPD-ATVETIIKQALKNL 193 >gi|294789135|ref|ZP_06754374.1| holliday junction DNA helicase RuvA [Simonsiella muelleri ATCC 29453] gi|294482876|gb|EFG30564.1| holliday junction DNA helicase RuvA [Simonsiella muelleri ATCC 29453] Length = 195 Score = 164 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 103/205 (50%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + ++IDV GV Y + ++T L +G+ L+ + +R+D L Sbjct: 1 MISRLRGTLIDKTPPQIVIDVNGVGYEVDVSMQTFYALPALGETVQLYTQLAVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L V G+GA+ A+G+LS ++ +L +I ++ K ++ P + K Sbjct: 61 FGFADLAERATFRQLVKVSGIGAKTALGILSALSPDDLAAAIASEDVKKLSSAPSVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK S+ + H + + + +S L+ LGY + ++ A Sbjct: 121 AERMILELRGKLTVSGSLKDDLL--------HATASVDNSEDVVSTLLALGYNEKESRLA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + D S+ ++LAL+ + Sbjct: 173 VKGLAAD----VDVSEGVKLALKNL 193 >gi|319795920|ref|YP_004157560.1| holliday junction DNA helicase ruva [Variovorax paradoxus EPS] gi|315598383|gb|ADU39449.1| Holliday junction DNA helicase RuvA [Variovorax paradoxus EPS] Length = 190 Score = 164 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G + V++D GV Y + P+ T L G+ +L +R+D L Sbjct: 1 MIGKLTGVLAERNPPQVVVDCNGVGYEVDVPMSTFYNLPGTGERVSLLTHFVVREDAQIL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L + GVG R A+G+LS ++ EL ++I Q + +IPGI K Sbjct: 61 YGFGTAEERAAFRQLIKITGVGPRTALGLLSGMSVGELSQAITTQELGRLVKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R +++ + + + AL+ LGY +A A Sbjct: 121 AER-------------LLLELKGKLGADIGLPTHAASDAQADILQALIALGYSDKEAALA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + ++ A S+ I+LAL+A++ Sbjct: 168 LKAL----PKDATVSEGIKLALKALA 189 >gi|163850397|ref|YP_001638440.1| Holliday junction DNA helicase motor protein [Methylobacterium extorquens PA1] gi|218528957|ref|YP_002419773.1| Holliday junction DNA helicase RuvA [Methylobacterium chloromethanicum CM4] gi|240137474|ref|YP_002961945.1| Holliday junction ATP-dependent DNA helicase ruvA [Methylobacterium extorquens AM1] gi|229560101|sp|A9W1B3|RUVA_METEP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254766970|sp|B7L255|RUVA_METC4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|163662002|gb|ABY29369.1| Holliday junction DNA helicase RuvA [Methylobacterium extorquens PA1] gi|218521260|gb|ACK81845.1| Holliday junction DNA helicase RuvA [Methylobacterium chloromethanicum CM4] gi|240007442|gb|ACS38668.1| Holliday junction ATP-dependent DNA helicase ruvA [Methylobacterium extorquens AM1] Length = 208 Score = 164 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 86/209 (41%), Positives = 130/209 (62%), Gaps = 5/209 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ ED+V++DV GV Y+++C RTL L K G+ L +ETH+R+D IRL Sbjct: 1 MIGKLKGIVDSYGEDFVILDVNGVGYVVHCSARTLQRLPKPGEATDLAIETHVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +R+WF LLQ+VQGVG RVA+GVLS + +L +I + +A+ PG+ ++ Sbjct: 61 YGFRVDAEREWFRLLQTVQGVGTRVALGVLSVLEPAQLATAIATGDKGAVARAPGVGPRL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+R++ ELK KA + + + ++ + P +AISALVNLGY Q QA+ A Sbjct: 121 AARLVAELKDKAPAFAPIDPALIALTGAVEDRTAPQP--VADAISALVNLGYAQIQASAA 178 Query: 181 VVSVLKKEKNIADDSQ---IIRLALRAIS 206 + + LK A + +IRL LR ++ Sbjct: 179 IAAALKGLGEEAGTVEAKTLIRLGLRELA 207 >gi|153008543|ref|YP_001369758.1| Holliday junction DNA helicase RuvA [Ochrobactrum anthropi ATCC 49188] gi|166230577|sp|A6WY75|RUVA_OCHA4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|151560431|gb|ABS13929.1| Holliday junction DNA helicase RuvA [Ochrobactrum anthropi ATCC 49188] Length = 205 Score = 164 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 90/206 (43%), Positives = 140/206 (67%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + ED+ +IDV GV Y+ +C RTL LG +G+ LF+ET++R+D IRL Sbjct: 1 MIGKLKGVIDEIAEDHAVIDVHGVGYVAFCSARTLGNLGGVGEAAILFIETYVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + L+R+WF LLQ+VQGVGA+VA+ VL ++ +EL +I L++ ++++ PG+ K+ Sbjct: 61 YGFANQLEREWFRLLQNVQGVGAKVALAVLGTLSPSELANAIALRDIAMVSRAPGVGKKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA + + + K++ + P+ +A+SAL NLGY +DQA A Sbjct: 121 AERIVTELKNKAPAFAGDASGTIGL--KQELGAGAAPAPVADAVSALSNLGYSRDQAANA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + LK+ AD +++IRL L+ +S Sbjct: 179 VAAALKEAGENADSAKLIRLGLKELS 204 >gi|118594338|ref|ZP_01551685.1| Holliday junction DNA helicase RuvA [Methylophilales bacterium HTCC2181] gi|118440116|gb|EAV46743.1| Holliday junction DNA helicase RuvA [Methylophilales bacterium HTCC2181] Length = 193 Score = 164 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 100/206 (48%), Gaps = 16/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+IKG + +LID QGV Y I P+ T L G TL +R+D L Sbjct: 1 MIGRIKGYLLEKIPPIILIDCQGVGYEIEVPMTTFFDLPDEGSEITLLTHLIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +RQ F L V G+GA+VA+ +L I +++L ++I + ++ +IPGI K Sbjct: 61 FGFATAAERQMFRQLIKVNGIGAKVALSILGSIGSSDLADAIQHDDINMLVKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + L + + + +AL++LGY A+ A Sbjct: 121 AERLVLELKDRLKDLH------------IDPSVKKHATHIEDIENALISLGYSAKDASMA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + IR AL+++S Sbjct: 169 IKLL----PENISINDGIRQALKSLS 190 >gi|239832790|ref|ZP_04681119.1| Holliday junction DNA helicase RuvA [Ochrobactrum intermedium LMG 3301] gi|239825057|gb|EEQ96625.1| Holliday junction DNA helicase RuvA [Ochrobactrum intermedium LMG 3301] Length = 205 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 90/206 (43%), Positives = 138/206 (66%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + ED+ +IDV GV Y +C RTL LG G+ LF+ET++R+D IRL Sbjct: 1 MIGKLKGVIDEIAEDHAVIDVHGVGYAAFCSARTLGNLGGAGEAAVLFIETYVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + L+R+WF LLQ+VQGVGA+VA+ VL ++ +EL +I L++ ++++ PG+ K+ Sbjct: 61 YGFANQLEREWFRLLQNVQGVGAKVALAVLGTLSPSELANAIALRDIAMVSRAPGVGKKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA + + + K++ + P+ +A+SAL NLGY +DQA A Sbjct: 121 AERIVTELKNKAPAFAGDASGTIGL--KQELGAGAAPAPVADAVSALSNLGYSRDQAANA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + LK+ AD +++IRL L+ +S Sbjct: 179 VAAALKEAGENADSAKLIRLGLKELS 204 >gi|163855209|ref|YP_001629507.1| Holliday junction DNA helicase RuvA [Bordetella petrii DSM 12804] gi|229560006|sp|A9I8F2|RUVA_BORPD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|163258937|emb|CAP41236.1| holliday junction DNA helicase [Bordetella petrii] Length = 190 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 105/205 (51%), Gaps = 17/205 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + + +DV G+ Y I P+ TL L ++G TL +R+D L Sbjct: 1 MIGRITGTLIEKLPPTICVDVNGLGYDIEVPMSTLYALPELGARVTLHTHLTVREDAHIL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+GAR A+ VLS ++ ++L ++I LQ S + ++PGI K Sbjct: 61 YGFATAAERGAFRELIKVSGIGARTALSVLSGLSVSDLAQAITLQESGRLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++GK + A ++P + ++AL+ LGY ++ A Sbjct: 121 AERLLLEMRGKLGA-------------DIGATAHAVPDSQTDILNALLALGYSDKESQAA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + S+ IRLAL+A+ Sbjct: 168 LKKL----PEGTGVSEGIRLALKAL 188 >gi|283796454|ref|ZP_06345607.1| holliday junction DNA helicase RuvA [Clostridium sp. M62/1] gi|291075862|gb|EFE13226.1| holliday junction DNA helicase RuvA [Clostridium sp. M62/1] Length = 248 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 101/206 (49%), Gaps = 3/206 (1%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 I I+G + + +++ G+ Y I+ P+ L L +G ++ +R+D + L+ Sbjct: 43 ISYIRGILAEKMDGAAVVEAGGIGYRIFMPLSALELLPAVGQEAVVYTYFQVREDAMSLY 102 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GFL+ DR+ F L V G+G + A+G+L + +L +I+ + K I++ PGI K A Sbjct: 103 GFLNRQDREMFRQLIGVNGIGPKAALGLLGALRPDDLRLAILTGDVKAISRAPGIGAKTA 162 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS-MPSFAINAISALVNLGYGQDQATTA 180 RI+ +LK K + + S + S A A+ ALV LGY +A+ A Sbjct: 163 QRIILDLKDKVSAEEILASVTASDGGAKAPEAASLTAEAAREAVDALVALGYSNLEASKA 222 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V V + D +++ +L+ ++ Sbjct: 223 VKQV--EVTEEMDAEAVLKASLKYLA 246 >gi|313239182|emb|CBY14141.1| unnamed protein product [Oikopleura dioica] Length = 202 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 95/205 (46%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + V+++V GV Y + P+ + L IG L +R+D L Sbjct: 1 MITFLHGRLVDALPTQVVVEVHGVGYEVLIPLSSFDRLPGIGQEIHLLTHLTVREDAHTL 60 Query: 61 FGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GF++ +R+ F LL +V G+G R+A+ VLS + T ++ + + ++QI G+ K Sbjct: 61 YGFVTGAERELFRLLVHTVTGIGPRIALNVLSGMPPTAFRSAVATGDIRALSQISGVGRK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ ELK K S +++ +A+ ALV LG+ Q +A Sbjct: 121 TAERIIVELKDKVGSAAALETTGPGRT------AGPTEKAVHDAVLALVALGFKQPEAFE 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V + A Q++R L+ Sbjct: 175 TVRAAQAALGPQATVEQLVRAGLKK 199 >gi|331000258|ref|ZP_08323942.1| Holliday junction DNA helicase RuvA [Parasutterella excrementihominis YIT 11859] gi|329572424|gb|EGG54077.1| Holliday junction DNA helicase RuvA [Parasutterella excrementihominis YIT 11859] Length = 189 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 97/206 (47%), Gaps = 20/206 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G I V+I+ G+ Y I P+ T L IG+ L +R+D L Sbjct: 1 MIATIRGKILQKNPPQVVIECGGLGYEIDVPMSTFYNLPNIGEEVFLETVMIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ F L V G+G R+++ +LS ++A ++ +I ++ +PGI K Sbjct: 61 YGFLTSQEKSVFRQLLKVSGIGPRISLAMLSSMSAEDIGNAIANNEIGLLTMVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + ++ S I ALV LG+ + +A A Sbjct: 121 AERLVLELKDKMV----------------VTSAPTVSSVQTEVIQALVALGFSEREARGA 164 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 +V AD S+ IRL LR ++ Sbjct: 165 AKNV----PADADASEGIRLCLRQLA 186 >gi|303241604|ref|ZP_07328103.1| Holliday junction DNA helicase RuvA [Acetivibrio cellulolyticus CD2] gi|302590824|gb|EFL60573.1| Holliday junction DNA helicase RuvA [Acetivibrio cellulolyticus CD2] Length = 202 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 104/206 (50%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I+G +E + +Y++++ GV Y IY + T+ + IG ++ ++R+D + L Sbjct: 1 MFAYIRGKLEYKHNEYIVVEANGVGYKIYTSLSTIQNVESIGSEVKIYTHLYVREDIMSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + F LL V GVG + A+ V+S ++ ++ S+I + K + + GI K+ Sbjct: 61 YGFLTQEEMGMFELLLGVSGVGPKAAISVISSMSPSKFGLSVITDDYKSLTKAQGIGNKM 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K V + S AISALV LGY +A+ A Sbjct: 121 AQRIILELKDKIDKTDMVTS---FNGKDGAIPANNDNSRVSEAISALVVLGYTATEASKA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V SV + D II+ AL+ ++ Sbjct: 178 VASVYS---DDMDLECIIKSALKGLA 200 >gi|319943009|ref|ZP_08017292.1| crossover junction ATP-dependent DNA helicase RuvA [Lautropia mirabilis ATCC 51599] gi|319743551|gb|EFV95955.1| crossover junction ATP-dependent DNA helicase RuvA [Lautropia mirabilis ATCC 51599] Length = 195 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 102/205 (49%), Gaps = 14/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + +L+D GV Y I P+ TL L G TL+ +R+D L Sbjct: 1 MIGRIHGTLVLANPPEILVDAHGVGYEISVPMSTLYELPPPGQTVTLWTHLVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL++ +R F + V G+G R+A+ VLS ++ +L ++ Q + + ++PG+ K Sbjct: 61 YGFLTESERTAFRAMIRVSGIGPRMALAVLSGLSVDDLSRAVAEQETGRLTRVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + Q + ++ S + + AL+ LGY + ++ A Sbjct: 121 AERLLLELKGKL----------ALASSGIQINDQALFSSGDDILRALLALGYSEKESNAA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + + IR AL+ + Sbjct: 171 IAKL----PEGVNVNDGIRQALKLL 191 >gi|306841422|ref|ZP_07474124.1| Holliday junction DNA helicase RuvA [Brucella sp. BO2] gi|306288528|gb|EFM59880.1| Holliday junction DNA helicase RuvA [Brucella sp. BO2] Length = 205 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 90/206 (43%), Positives = 139/206 (67%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + ED+ +IDV GV Y+ +C RTL LG G+ LF+ET++R+D IRL Sbjct: 1 MIGKLKGVIDEIAEDHAVIDVHGVGYVAFCSARTLGNLGGAGEAAILFIETYVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + L+R+WF LLQ+VQGVGA+VA+ VL ++ +EL +I L++ ++++ PG+ K+ Sbjct: 61 YGFATQLEREWFRLLQNVQGVGAKVALAVLGTLSPSELANAIALRDIAMVSRAPGVGKKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA + + + K++ + P+ +A+SAL NLGY +DQA A Sbjct: 121 AERIVTELKNKAPAFAGDASGTIGL--KQELGAGAAPAPVADAVSALSNLGYSRDQAANA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + LK+ AD +++IRL L+ +S Sbjct: 179 VAAALKEAGEGADSAKLIRLGLKELS 204 >gi|294678733|ref|YP_003579348.1| holliday junction DNA helicase RuvA [Rhodobacter capsulatus SB 1003] gi|294477553|gb|ADE86941.1| holliday junction DNA helicase RuvA [Rhodobacter capsulatus SB 1003] Length = 222 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 71/220 (32%), Positives = 118/220 (53%), Gaps = 15/220 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G I D+VLIDV+GV YI++ RT + L +G+ C L+ E +R+D ++L Sbjct: 1 MIGRIAGVILHRAMDHVLIDVRGVGYIVHVSSRTAANLPPVGEACALYTELLVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++W LL SVQG+GA+ ++ +L + + ++ L + I PG+ K+ Sbjct: 61 FGFPTLIEKEWHRLLTSVQGIGAKASLAILGTLGPEGVSRALALGDWNAIKAAPGVGPKL 120 Query: 121 ASRIMTELKGKAISL--------------SSVVQQDMSCVNKEQAHICSMPSFAINAISA 166 A R++ ELK KA ++ ++++ V + +F A+SA Sbjct: 121 AQRVVMELKDKAPTVMAMGGTLTVDTAPSDALIETAPKPVKRPAPAATRQVNFTAEALSA 180 Query: 167 LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 L NLGY A TAV + D +++IR ALR ++ Sbjct: 181 LTNLGYSPSDAATAVARA-SENPEATDTAKLIRTALRLLA 219 >gi|294635834|ref|ZP_06714289.1| holliday junction DNA helicase RuvA [Edwardsiella tarda ATCC 23685] gi|291090806|gb|EFE23367.1| holliday junction DNA helicase RuvA [Edwardsiella tarda ATCC 23685] Length = 195 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 55/196 (28%), Positives = 92/196 (46%), Gaps = 4/196 (2%) Query: 9 IEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLD 68 I VL++ GV Y + P+ L + G +F +R+D L+GF + + Sbjct: 2 ILEKQPPQVLLEAGGVGYEVQMPMTCFYELPQPGSEAVIFTHFVVREDAQLLYGFNNKQE 61 Query: 69 RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 R F L V GVG ++A+ +LS ++A + V ++ + + ++PG+ K A R++ E+ Sbjct: 62 RALFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREEVAALIKLPGVGKKTAERLVVEM 121 Query: 129 KGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKE 188 K + LS + S A + A++AL+ LGY +A+ V V Sbjct: 122 KDRFKGLSGDLFTP-SDDLPPSAQPQAQADAEGEAVAALIALGYKPQEASRLVNRVAS-- 178 Query: 189 KNIADDSQIIRLALRA 204 AD +IR ALRA Sbjct: 179 -VGADSETLIRDALRA 193 >gi|167837835|ref|ZP_02464718.1| Holliday junction DNA helicase motor protein [Burkholderia thailandensis MSMB43] Length = 193 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y + P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGTLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPHTGEKVMLLTQLIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L + GVGAR+A+ VLS ++ EL +++ LQ++ + ++PGI K Sbjct: 61 YGFLTPQERSTFRELLKITGVGARMALAVLSGMSVAELSQAVTLQDAARLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ++ + A S A + ++AL+ LGY + +A A Sbjct: 121 AERL-----------LLELKGKLGADLGPLAGAASPSDHAADILNALLALGYSEKEALAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +V S+ I+L+L+A+S Sbjct: 170 IKNV----PAGTGVSEGIKLSLKALS 191 >gi|30248236|ref|NP_840306.1| Holliday junction DNA helicase subunit [Nitrosomonas europaea ATCC 19718] gi|44888448|sp|Q820S3|RUVA_NITEU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|30180121|emb|CAD84123.1| probable Holliday junction DNA helicase subunit [Nitrosomonas europaea ATCC 19718] Length = 195 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 99/206 (48%), Gaps = 14/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + + VL+DV G+ Y I P+ T L IG+ TL +R+D L Sbjct: 1 MIGRIAGLLLEKHPPLVLVDVNGIGYEIDVPMSTFCRLPGIGEQVTLHTHFWVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+++ +R F L + G+GAR + +LS ++ +L + ++ Q+S + +IPGI K Sbjct: 61 FGFMTEPERVLFRQLTKISGIGARTGLAILSGLSVNDLHQIVVSQDSTRLTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K + + S + ++AL LGY +A A Sbjct: 121 AERLLLELRDKIS----------PAITLPETGTAMASSTDKDILNALSALGYNDREANWA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + S I +LR +S Sbjct: 171 VGQL----SEGVTVSDGIMQSLRLLS 192 >gi|90022179|ref|YP_528006.1| Holliday junction DNA helicase subunit RuvA [Saccharophagus degradans 2-40] gi|122996073|sp|Q21HN5|RUVA_SACD2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|89951779|gb|ABD81794.1| Holliday junction DNA helicase subunit RuvA [Saccharophagus degradans 2-40] Length = 207 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 53/209 (25%), Positives = 101/209 (48%), Gaps = 7/209 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + ++LID+ GV Y + P+ T L +G+ L + + +L Sbjct: 1 MIGRLTGILAEKKAPHLLIDIGGVGYDVIAPMTTFYRLPALGEKAVLHTHFSVSETSQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S DR+ F +L V GVG ++A+G++S + ++ + ++ N + ++PG+ K Sbjct: 61 FGFSSQQDRELFRMLIKVNGVGPKLAVGIMSMES-SDFAKCVLDGNLTALVKLPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQ----AHICSMPSFAINAISALVNLGYGQDQ 176 A R++ +++ + +L + + + + +A SAL+ LGY + Sbjct: 120 AERLLVDMRDRVKALDTTPSEHSPTGEGAGIVRVDPVINTNVIIADAESALIGLGYKPTE 179 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A AV + I +IR AL+ + Sbjct: 180 AAKAVSAAY--NDTITTSEDLIRAALKGM 206 >gi|291538854|emb|CBL11965.1| Holliday junction DNA helicase subunit RuvA [Roseburia intestinalis XB6B4] Length = 203 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 107/206 (51%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + E+ ++++ G+ Y IY +T L +G+ ++ H+R+D + L Sbjct: 1 MYSYIKGILTDMDEESIVVETGGIGYHIYTTGQTFRYLPSVGEEVKVYTYLHVREDAMLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ + + + LL V G+G + A+ +LS +T +L +++ ++K IA+ PG+ K Sbjct: 61 FGFLTKDELKIYKLLLGVSGIGPKGALAILSVMTTDDLRFAVLGDDAKAIAKAPGVGAKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K LS + ++ A+ ALV LGY +A A Sbjct: 121 AQRLILELKDK---LSLEDAFEQKFEKTGESTENHASGTKNEAVQALVALGYSSSEALRA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + D +I+++AL+ ++ Sbjct: 178 LNGI--EITEETDVEEILKMALKKMA 201 >gi|325264009|ref|ZP_08130742.1| holliday junction DNA helicase RuvA [Clostridium sp. D5] gi|324031047|gb|EGB92329.1| holliday junction DNA helicase RuvA [Clostridium sp. D5] Length = 207 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 102/205 (49%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + + + V++DV GV Y IY P + + L + G + ++R+D ++L Sbjct: 8 MISYIRGELAAVETEKVIVDVGGVGYGIYMPGQAMGLLPQPGHEVKIHTYLNVREDAMQL 67 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ D + F L+ V G+G + + +LS+++ +L +++ + K I+ PGI K Sbjct: 68 FGFLTRDDLEVFKLVIGVSGIGPKGGLNILSQLSPDDLRFAVMAGDVKAISAAPGIGKKT 127 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK K LS + A + A+ ALV LGYG ++ A Sbjct: 128 AEKLIIELKDK---LSIEDVLTHAAEGSAAAVPVNNGGIQSEAVQALVALGYGSTESLRA 184 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V +++ AL+ + Sbjct: 185 VKQVELDNP---TVEDVLKEALKKM 206 >gi|254719706|ref|ZP_05181517.1| Holliday junction DNA helicase RuvA [Brucella sp. 83/13] gi|265984721|ref|ZP_06097456.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella sp. 83/13] gi|306837835|ref|ZP_07470697.1| Holliday junction DNA helicase RuvA [Brucella sp. NF 2653] gi|264663313|gb|EEZ33574.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella sp. 83/13] gi|306407074|gb|EFM63291.1| Holliday junction DNA helicase RuvA [Brucella sp. NF 2653] Length = 205 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 90/206 (43%), Positives = 139/206 (67%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + ED+ +IDV GV Y+ +C RTL LG G+ LF+ET++R+D IRL Sbjct: 1 MIGKLKGVIDEIAEDHAVIDVHGVGYVAFCSARTLGNLGGAGEAAILFIETYVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + L+R+WF LLQ+VQGVGA+VA+ VL ++ +EL +I L++ ++++ PG+ K+ Sbjct: 61 YGFATQLEREWFRLLQNVQGVGAKVALAVLGTLSPSELANAIALRDIAMVSRAPGVGKKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA + + + K++ + P+ +A+SAL NLGY +DQA A Sbjct: 121 AERIVTELKNKAPAFAGEASGTIGL--KQELGAGAAPAPVADAVSALSNLGYSRDQAANA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + LK+ AD +++IRL L+ +S Sbjct: 179 VAAALKEAGEGADSAKLIRLGLKELS 204 >gi|331663357|ref|ZP_08364267.1| holliday junction DNA helicase RuvA [Escherichia coli TA143] gi|331059156|gb|EGI31133.1| holliday junction DNA helicase RuvA [Escherichia coli TA143] Length = 188 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 52/188 (27%), Positives = 91/188 (48%), Gaps = 3/188 (1%) Query: 17 VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76 VLI+V GV Y ++ P+ L + G +F +R+D L+GF + +R F L Sbjct: 2 VLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELI 61 Query: 77 SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136 GVG ++A+ +LS ++A + V ++ + + ++PGI K A R++ E+K + L Sbjct: 62 KTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGLH 121 Query: 137 SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQ 196 + + + + A++ALV LGY +A+ V + + A Sbjct: 122 GDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRMVSKIAR---PDASSET 178 Query: 197 IIRLALRA 204 +IR ALRA Sbjct: 179 LIREALRA 186 >gi|21243875|ref|NP_643457.1| Holliday junction DNA helicase RuvA [Xanthomonas axonopodis pv. citri str. 306] gi|294626863|ref|ZP_06705455.1| Holliday junction DNA helicase motor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665404|ref|ZP_06730692.1| Holliday junction DNA helicase motor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|24212375|sp|Q8PHV0|RUVA_XANAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|21109477|gb|AAM37993.1| holliday junction binding protein DNA helicase [Xanthomonas axonopodis pv. citri str. 306] gi|292598877|gb|EFF43022.1| Holliday junction DNA helicase motor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292604815|gb|EFF48178.1| Holliday junction DNA helicase motor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 194 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 60/204 (29%), Positives = 95/204 (46%), Gaps = 13/204 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +++IDV GV Y + P+ T L +G LF ++D + L Sbjct: 1 MIGRLRGILAYKQPPWLVIDVGGVGYELEAPMSTFYDLPDVGRDVILFTHYAQKEDSVSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + +R+ F +Q V G+GA++A+ VLS ++ E I + + +IPGI K Sbjct: 61 YGFLREGERRLFRDVQKVTGIGAKIALAVLSGVSVDEFARLITSGDITALTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ +A SS P A AL LGY +A Sbjct: 121 AERMVVELRDRAADFSSGAP----------ITGQLGPDAVSEATVALQQLGYKPAEAARM 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + +A IR AL+A Sbjct: 171 ARDAGAEGDEVATV---IRKALQA 191 >gi|303258188|ref|ZP_07344195.1| holliday junction DNA helicase RuvA [Burkholderiales bacterium 1_1_47] gi|302858941|gb|EFL82025.1| holliday junction DNA helicase RuvA [Burkholderiales bacterium 1_1_47] Length = 189 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 97/206 (47%), Gaps = 20/206 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G I V+++ G+ Y I P+ T L IG+ L +R+D L Sbjct: 1 MIATIRGKILQKNPPQVVVECGGLGYEIDVPMSTFYNLPNIGEEVFLETVMIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ F L V G+G R+++ +LS ++A ++ +I ++ +PGI K Sbjct: 61 YGFLTSQEKSVFRQLLKVSGIGPRISLAMLSSMSAEDIGNAIANNEIGLLTMVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + ++ S I ALV LG+ + +A A Sbjct: 121 AERLVLELKDKMV----------------VTSAPTVSSVQTEVIQALVALGFSEREARGA 164 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 +V AD S+ IRL LR ++ Sbjct: 165 AKNV----PADADASEGIRLCLRQLA 186 >gi|126663097|ref|ZP_01734095.1| Holliday junction DNA helicase [Flavobacteria bacterium BAL38] gi|126624755|gb|EAZ95445.1| Holliday junction DNA helicase [Flavobacteria bacterium BAL38] Length = 193 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 100/205 (48%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + V+ID GV Y I + T S L + LF +++D L Sbjct: 1 MIAHIQGRLVEKTPTEVIIDCNGVGYHINISLHTYSLLPDS-ESLKLFTFLQIKEDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ +R+ F LL SV GVGA +A +LS + ++++++I + + + GI K Sbjct: 60 YGFVEKQERELFKLLISVSGVGASIARTMLSSLAPSQIIQAIASNDIGTMQSMKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + + N ++ + + A+SAL LG+ + A Sbjct: 120 AQRIILDLKEKVLKVY----------NLDEVSVIESNTNKDEALSALEVLGFARKAAEKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++++ N A +I+ AL+ + Sbjct: 170 IDKIIRETPN-ATVENLIKQALKNL 193 >gi|300770096|ref|ZP_07079975.1| crossover junction ATP-dependent DNA helicase RuvA [Sphingobacterium spiritivorum ATCC 33861] gi|300762572|gb|EFK59389.1| crossover junction ATP-dependent DNA helicase RuvA [Sphingobacterium spiritivorum ATCC 33861] Length = 194 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 103/205 (50%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M G + +V++DV G+ Y I+ + T S L K + C LF+ +R+D L Sbjct: 1 MYEYFNGKLVFKAPTHVVLDVNGIGYYIHISLNTFS-LIKDQENCKLFISFQVREDSQTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +RQ F L SV G+G +LS IT E+ +II VI +I GI K Sbjct: 60 FGFANEGERQLFEHLISVSGIGPNTGRMILSSITPEEIQSAIINGQVAVIQKIKGIGPKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K + + + S S A+SAL+ LG+ ++QA Sbjct: 120 AQRLILELQDKLKKQGP---------DALISPVASKQSVPEEALSALIMLGFVKNQAEKV 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +++ E ++ Q+I+LAL+ + Sbjct: 171 LNTIINTEPDL-SVEQLIKLALKRL 194 >gi|323702066|ref|ZP_08113734.1| Holliday junction DNA helicase RuvA [Desulfotomaculum nigrificans DSM 574] gi|323532948|gb|EGB22819.1| Holliday junction DNA helicase RuvA [Desulfotomaculum nigrificans DSM 574] Length = 199 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 102/206 (49%), Gaps = 10/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + + +V++DV G+ Y +Y P T L G + +R+D I++ Sbjct: 1 MIAYIKGKLAYIGAGWVVVDVNGIGYRLYIPAMT--KLPSTGQEVQFYTHMAVREDGIQI 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + + + F+ L V GVG +VA+ V++ + I N + ++PG+ K Sbjct: 59 YGFLQEEELECFLALLDVAGVGPKVALAVVAHLPPGVFKGIIASGNVNQLVKVPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RIM ELK K +++ + + + +A+ AL++LGY Q++A A Sbjct: 119 AQRIMLELKDKLRGPAALPEPS-------ETITPAPGRIEDDAVVALLSLGYAQNEAREA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + D S +I+ AL+ ++ Sbjct: 172 VRQAM-GLGLTGDVSALIKAALKELA 196 >gi|313677422|ref|YP_004055418.1| holliday junction DNA helicase ruva [Marivirga tractuosa DSM 4126] gi|312944120|gb|ADR23310.1| Holliday junction DNA helicase RuvA [Marivirga tractuosa DSM 4126] Length = 197 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 60/204 (29%), Positives = 100/204 (49%), Gaps = 8/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG+I L +++I+V GV Y + P+ T K + H+++D L Sbjct: 1 MISYLKGSIIELEPTHLIIEVGGVGYHVIIPMSTYDAF-KSQKEVKVLTHFHVKEDSQTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F+ L + G+G A+G+LS + E+ SI+ +N K I I GI K Sbjct: 60 YGFYLPEERTVFLDLIGISGIGPSTAIGMLSAMNPNEIKSSIVAENVKQIQSIKGIGGKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + + S S S A+SAL+NLG+ ++ A Sbjct: 120 AQRVILELKDRYKKEGLITESTQSSG-------VSNNSLRNEALSALINLGFAKNSAEKV 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + +L+ K Q+I+ AL++ Sbjct: 173 IDKILQANKENITLEQLIKQALKS 196 >gi|17986616|ref|NP_539250.1| Holliday junction DNA helicase RuvA [Brucella melitensis bv. 1 str. 16M] gi|23502561|ref|NP_698688.1| Holliday junction DNA helicase RuvA [Brucella suis 1330] gi|62290575|ref|YP_222368.1| Holliday junction DNA helicase RuvA [Brucella abortus bv. 1 str. 9-941] gi|82700491|ref|YP_415065.1| Holliday junction DNA helicase RuvA [Brucella melitensis biovar Abortus 2308] gi|148560383|ref|YP_001259556.1| Holliday junction DNA helicase RuvA [Brucella ovis ATCC 25840] gi|161619632|ref|YP_001593519.1| Holliday junction DNA helicase motor protein [Brucella canis ATCC 23365] gi|163845283|ref|YP_001622938.1| Holliday junction DNA helicase RuvA [Brucella suis ATCC 23445] gi|189024793|ref|YP_001935561.1| Holliday junction DNA helicase RuvA [Brucella abortus S19] gi|225628272|ref|ZP_03786306.1| Holliday junction DNA helicase RuvA [Brucella ceti str. Cudo] gi|225853159|ref|YP_002733392.1| Holliday junction DNA helicase RuvA [Brucella melitensis ATCC 23457] gi|237816080|ref|ZP_04595076.1| Holliday junction DNA helicase RuvA [Brucella abortus str. 2308 A] gi|254689871|ref|ZP_05153125.1| Holliday junction DNA helicase RuvA [Brucella abortus bv. 6 str. 870] gi|254694364|ref|ZP_05156192.1| Holliday junction DNA helicase RuvA [Brucella abortus bv. 3 str. Tulya] gi|254698022|ref|ZP_05159850.1| Holliday junction DNA helicase RuvA [Brucella abortus bv. 2 str. 86/8/59] gi|254700364|ref|ZP_05162192.1| Holliday junction DNA helicase RuvA [Brucella suis bv. 5 str. 513] gi|254703482|ref|ZP_05165310.1| Holliday junction DNA helicase RuvA [Brucella suis bv. 3 str. 686] gi|254708429|ref|ZP_05170257.1| Holliday junction DNA helicase RuvA [Brucella pinnipedialis M163/99/10] gi|254708717|ref|ZP_05170528.1| Holliday junction DNA helicase RuvA [Brucella pinnipedialis B2/94] gi|254714564|ref|ZP_05176375.1| Holliday junction DNA helicase RuvA [Brucella ceti M644/93/1] gi|254717461|ref|ZP_05179272.1| Holliday junction DNA helicase RuvA [Brucella ceti M13/05/1] gi|254730906|ref|ZP_05189484.1| Holliday junction DNA helicase RuvA [Brucella abortus bv. 4 str. 292] gi|256030243|ref|ZP_05443857.1| Holliday junction DNA helicase RuvA [Brucella pinnipedialis M292/94/1] gi|256045313|ref|ZP_05448207.1| Holliday junction DNA helicase RuvA [Brucella melitensis bv. 1 str. Rev.1] gi|256061740|ref|ZP_05451877.1| Holliday junction DNA helicase RuvA [Brucella neotomae 5K33] gi|256114271|ref|ZP_05455016.1| Holliday junction DNA helicase RuvA [Brucella melitensis bv. 3 str. Ether] gi|256255624|ref|ZP_05461160.1| Holliday junction DNA helicase RuvA [Brucella ceti B1/94] gi|256258125|ref|ZP_05463661.1| Holliday junction DNA helicase RuvA [Brucella abortus bv. 9 str. C68] gi|256263350|ref|ZP_05465882.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella melitensis bv. 2 str. 63/9] gi|260167918|ref|ZP_05754729.1| Holliday junction DNA helicase RuvA [Brucella sp. F5/99] gi|260547181|ref|ZP_05822919.1| bacterial DNA recombination protein [Brucella abortus NCTC 8038] gi|260565796|ref|ZP_05836279.1| Holliday junction ATP-dependent DNA helicase ruvA [Brucella melitensis bv. 1 str. 16M] gi|260568788|ref|ZP_05839256.1| bacterial DNA recombination protein [Brucella suis bv. 4 str. 40] gi|260755403|ref|ZP_05867751.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus bv. 6 str. 870] gi|260758625|ref|ZP_05870973.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus bv. 4 str. 292] gi|260762457|ref|ZP_05874794.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus bv. 2 str. 86/8/59] gi|260884418|ref|ZP_05896032.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus bv. 9 str. C68] gi|261214674|ref|ZP_05928955.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus bv. 3 str. Tulya] gi|261219293|ref|ZP_05933574.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella ceti M13/05/1] gi|261222827|ref|ZP_05937108.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella ceti B1/94] gi|261315928|ref|ZP_05955125.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella pinnipedialis M163/99/10] gi|261316209|ref|ZP_05955406.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella pinnipedialis B2/94] gi|261322354|ref|ZP_05961551.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella ceti M644/93/1] gi|261325744|ref|ZP_05964941.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella neotomae 5K33] gi|261750859|ref|ZP_05994568.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella suis bv. 5 str. 513] gi|261754112|ref|ZP_05997821.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella suis bv. 3 str. 686] gi|261757357|ref|ZP_06001066.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella sp. F5/99] gi|265987271|ref|ZP_06099828.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella pinnipedialis M292/94/1] gi|265991738|ref|ZP_06104295.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella melitensis bv. 1 str. Rev.1] gi|265995575|ref|ZP_06108132.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella melitensis bv. 3 str. Ether] gi|294850954|ref|ZP_06791630.1| Holliday junction DNA helicase RuvA [Brucella sp. NVSL 07-0026] gi|297248974|ref|ZP_06932682.1| Holliday junction DNA helicase RuvA [Brucella abortus bv. 5 str. B3196] gi|54039571|sp|P66743|RUVA_BRUSU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|54042200|sp|P66742|RUVA_BRUME RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|75496341|sp|Q57BH7|RUVA_BRUAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|123740945|sp|Q2YRD1|RUVA_BRUA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230523|sp|A5VS59|RUVA_BRUO2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189045743|sp|A9M7K1|RUVA_BRUC2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189045744|sp|A9WWI0|RUVA_BRUSI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560007|sp|B2S7E0|RUVA_BRUA1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254766948|sp|C0REW6|RUVA_BRUMB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|17982229|gb|AAL51514.1| holliday junction DNA helicase ruva [Brucella melitensis bv. 1 str. 16M] gi|23348562|gb|AAN30603.1| Holliday junction DNA helicase RuvA [Brucella suis 1330] gi|62196707|gb|AAX75007.1| RuvA, Holliday junction DNA helicase [Brucella abortus bv. 1 str. 9-941] gi|82616592|emb|CAJ11671.1| Bacterial DNA recombination protein, RuvA:Helix-hairpin-helix DNA-binding, class 1 [Brucella melitensis biovar Abortus 2308] gi|148371640|gb|ABQ61619.1| holliday junction DNA helicase RuvA [Brucella ovis ATCC 25840] gi|161336443|gb|ABX62748.1| Holliday junction DNA helicase RuvA [Brucella canis ATCC 23365] gi|163676006|gb|ABY40116.1| Holliday junction DNA helicase RuvA [Brucella suis ATCC 23445] gi|189020365|gb|ACD73087.1| Bacterial DNA recombination protein, RuvA [Brucella abortus S19] gi|225616118|gb|EEH13166.1| Holliday junction DNA helicase RuvA [Brucella ceti str. Cudo] gi|225641524|gb|ACO01438.1| Holliday junction DNA helicase RuvA [Brucella melitensis ATCC 23457] gi|237788743|gb|EEP62955.1| Holliday junction DNA helicase RuvA [Brucella abortus str. 2308 A] gi|260095546|gb|EEW79424.1| bacterial DNA recombination protein [Brucella abortus NCTC 8038] gi|260151169|gb|EEW86264.1| Holliday junction ATP-dependent DNA helicase ruvA [Brucella melitensis bv. 1 str. 16M] gi|260154172|gb|EEW89254.1| bacterial DNA recombination protein [Brucella suis bv. 4 str. 40] gi|260668943|gb|EEX55883.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus bv. 4 str. 292] gi|260672883|gb|EEX59704.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus bv. 2 str. 86/8/59] gi|260675511|gb|EEX62332.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus bv. 6 str. 870] gi|260873946|gb|EEX81015.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus bv. 9 str. C68] gi|260916281|gb|EEX83142.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella abortus bv. 3 str. Tulya] gi|260921411|gb|EEX88064.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella ceti B1/94] gi|260924382|gb|EEX90950.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella ceti M13/05/1] gi|261295044|gb|EEX98540.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella ceti M644/93/1] gi|261295432|gb|EEX98928.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella pinnipedialis B2/94] gi|261301724|gb|EEY05221.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella neotomae 5K33] gi|261304954|gb|EEY08451.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella pinnipedialis M163/99/10] gi|261737341|gb|EEY25337.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella sp. F5/99] gi|261740612|gb|EEY28538.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella suis bv. 5 str. 513] gi|261743865|gb|EEY31791.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella suis bv. 3 str. 686] gi|262766859|gb|EEZ12477.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella melitensis bv. 3 str. Ether] gi|263002694|gb|EEZ15097.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella melitensis bv. 1 str. Rev.1] gi|263093349|gb|EEZ17418.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella melitensis bv. 2 str. 63/9] gi|264659468|gb|EEZ29729.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella pinnipedialis M292/94/1] gi|294821597|gb|EFG38593.1| Holliday junction DNA helicase RuvA [Brucella sp. NVSL 07-0026] gi|297174107|gb|EFH33464.1| Holliday junction DNA helicase RuvA [Brucella abortus bv. 5 str. B3196] gi|326409716|gb|ADZ66781.1| Bacterial DNA recombination protein, RuvA [Brucella melitensis M28] gi|326539423|gb|ADZ87638.1| holliday junction DNA helicase RuvA [Brucella melitensis M5-90] Length = 205 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 90/206 (43%), Positives = 139/206 (67%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + ED+ +IDV GV Y+ +C RTL LG G+ LF+ET++R+D IRL Sbjct: 1 MIGKLKGVIDEIAEDHAVIDVHGVGYVAFCSARTLGNLGGAGEAAILFIETYVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + L+R+WF LLQ+VQGVGA+VA+ VL ++ +EL +I L++ ++++ PG+ K+ Sbjct: 61 YGFATQLEREWFRLLQNVQGVGAKVALAVLGTLSPSELANAIALRDIAMVSRAPGVGKKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA + + + K++ + P+ +A+SAL NLGY +DQA A Sbjct: 121 AERIVTELKNKAPAFAGEASGTIGL--KQELGAGAAPAPVADAVSALSNLGYSRDQAANA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + LK+ AD +++IRL L+ +S Sbjct: 179 VAAALKETGEGADSAKLIRLGLKELS 204 >gi|171915820|ref|ZP_02931290.1| Holliday junction DNA helicase motor protein [Verrucomicrobium spinosum DSM 4136] Length = 203 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 98/206 (47%), Gaps = 4/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G++ + + +DV GV Y+ P+ T L L ++ + L Sbjct: 1 MIAYLRGHLVEALPNQLTVDVNGVGYLCLVPLSTYDRLAGTQGEVRLLTHLNITERDHTL 60 Query: 61 FGFLSDLDRQWFMLLQS-VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 FGF + +R F LL + V G+G ++A+ VLS + + +++I + +++I G+ K Sbjct: 61 FGFATAEERDLFRLLINRVSGIGPKMALAVLSGMAVGDFKDNVIRNDVTALSRISGVGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ ELK K + + + + +A+ AL+ LG+ Q +A Sbjct: 121 TAERIVLELKDKVGIVDTW---QAARSTGNSLVPDPTQAAQTDAVLALIALGFKQTEAQK 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 V ++KK + ++IR ALR + Sbjct: 178 TVQDLVKKAGGVVSADKLIRDALRNL 203 >gi|329118736|ref|ZP_08247436.1| crossover junction ATP-dependent DNA helicase RuvA [Neisseria bacilliformis ATCC BAA-1200] gi|327465171|gb|EGF11456.1| crossover junction ATP-dependent DNA helicase RuvA [Neisseria bacilliformis ATCC BAA-1200] Length = 193 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 14/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + + ++IDV G+ Y ++T L +G+ L+ + +R+D L Sbjct: 1 MISRLTGTLAEKHPPQIVIDVNGIGYEAEVSMQTFCALPPVGETVRLYTQLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L V G+GA+ A+G+LS + EL +++ ++ K ++ PGI K Sbjct: 61 FGFADAEERAAFRQLVKVGGIGAKTALGILSAMNTAELAQAVAQEDVKRLSAAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK + + + L+ LGY + +A A Sbjct: 121 AERMILELRGKL----------APANVSGGLAAPAQQDGGEDIVQTLLALGYSEREARAA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + +RLAL+ + Sbjct: 171 AKGI----PPGTEVGEGVRLALKNL 191 >gi|153810824|ref|ZP_01963492.1| hypothetical protein RUMOBE_01208 [Ruminococcus obeum ATCC 29174] gi|149833220|gb|EDM88302.1| hypothetical protein RUMOBE_01208 [Ruminococcus obeum ATCC 29174] Length = 203 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 101/205 (49%), Gaps = 2/205 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + E+ V+++ G+ Y I+ ++ + +I + +R+D ++L Sbjct: 1 MISFIRGLVADTTENAVILENNGIGYEIFMTGSSIEQVSRIDGEVKIHTYFQVREDAMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS D + F LL +V G+G + A+GVL+ +TA EL +++ + K I++ PGI K Sbjct: 61 YGFLSKDDLEMFRLLLNVNGIGPKAALGVLAGLTADELRFAVLSDDIKTISKAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK K + ++ + A AL+ LGY A A Sbjct: 121 AQKLILELKDKLKLEDAFEKKLAHEQEAASVSGFLIHDGRQEAAEALIALGYSSTDAMKA 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V + D +++ AL+ + Sbjct: 181 VRKVTDVSPD--DVEALLKAALKQL 203 >gi|256370112|ref|YP_003107623.1| Holliday junction DNA helicase motor protein [Brucella microti CCM 4915] gi|306844695|ref|ZP_07477280.1| Holliday junction DNA helicase RuvA [Brucella sp. BO1] gi|256000275|gb|ACU48674.1| Holliday junction DNA helicase motor protein [Brucella microti CCM 4915] gi|306274867|gb|EFM56637.1| Holliday junction DNA helicase RuvA [Brucella sp. BO1] Length = 205 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 90/206 (43%), Positives = 139/206 (67%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + ED+ +IDV GV Y+ +C RTL LG G+ LF+ET++R+D IRL Sbjct: 1 MIGKLKGVIDEIAEDHAVIDVHGVGYVAFCSARTLGNLGGAGEAAILFIETYVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + L+R+WF LLQ+VQGVGA+VA+ VL ++ +EL +I L++ ++++ PG+ K+ Sbjct: 61 YGFATQLEREWFRLLQNVQGVGAKVALAVLGTLSPSELANAIALRDIAMVSRAPGVGKKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA + + + K++ + P+ +A+SAL NLGY +DQA A Sbjct: 121 AERIVTELKNKAPAFAGEASGTIGL--KQELGAGAAPAPVADAVSALSNLGYSRDQAANA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + LK+ AD +++IRL L+ +S Sbjct: 179 VAAALKEAGEGADSAKLIRLGLKELS 204 >gi|290967870|ref|ZP_06559420.1| Holliday junction DNA helicase RuvA [Megasphaera genomosp. type_1 str. 28L] gi|290782009|gb|EFD94587.1| Holliday junction DNA helicase RuvA [Megasphaera genomosp. type_1 str. 28L] Length = 200 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 73/205 (35%), Positives = 105/205 (51%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG I+G + ++ +Y IDV GV Y IY P TL+ L TLF H+R+D I L Sbjct: 1 MIGYIRGPVTRIFHEYCFIDVHGVGYRIYAPAATLAALVPE-RETTLFTYMHVREDAILL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + FMLL V GVG +VA+G+LS +T E ++ ++ K + ++PGI K+ Sbjct: 60 YGFGTQEEYDVFMLLIGVSGVGPKVALGILSAVTPEEFCAAVQRKDLKTLTRMPGIGKKV 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 RI+ EL K SL + + S A+ AL LGY + +A TA Sbjct: 120 GDRILFELHDKVASLQGRIPD-----GADNGEDIDSGSHTDEAVEALRGLGYSESEAQTA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V SV K+ IR AL+ + Sbjct: 175 VASVTGKD---LSVEDKIRRALQVL 196 >gi|170693379|ref|ZP_02884538.1| Holliday junction DNA helicase RuvA [Burkholderia graminis C4D1M] gi|170141534|gb|EDT09703.1| Holliday junction DNA helicase RuvA [Burkholderia graminis C4D1M] Length = 193 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 108/206 (52%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y + P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGVLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPSTGERVVLLTQMIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L + G+GAR+A+ VLS ++ EL +++ LQ++ + ++PGI K Sbjct: 61 YGFGTAEERSTFRELLKISGIGARMALAVLSGMSVHELSQTVTLQDAARLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + + +S A + ++AL+ LGY + +A A Sbjct: 121 AERLLLELKGKLGADLGAMAGTVSASGH-----------ASDILNALLALGYSEKEALAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V +V S+ I+LAL+A+S Sbjct: 170 VKNV----PAGTGVSEGIKLALKALS 191 >gi|51892298|ref|YP_074989.1| Holliday junction DNA helicase RuvA [Symbiobacterium thermophilum IAM 14863] gi|81389173|sp|Q67Q98|RUVA_SYMTH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|51855987|dbj|BAD40145.1| Holliday junction DNA helicase RuvA [Symbiobacterium thermophilum IAM 14863] Length = 205 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 94/205 (45%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + D+V+IDV GV Y P T S L G L+ +R+D + L Sbjct: 1 MIAHLRGELVTAGADWVVIDVAGVGYRCLVPASTRSRLPAQGAAVQLYTYLQVREDALTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + F LL V GVG +VA+ VLS ++ ++ I ++PGI K Sbjct: 61 YGFLTQAEYDLFELLLRVDGVGPKVALAVLSTTDPAAFRRAVAFEDLDAICRVPGIGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K +V + + A AL+ LGY + +A A Sbjct: 121 AQRLVLELKDKIG---AVPAGGGGVPDGLPVAVAPAGDAWAEASEALIALGYSRGEAAAA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + V + ++RLAL+ + Sbjct: 178 LARVRAEAGEAPSVETLVRLALKQL 202 >gi|114327763|ref|YP_744920.1| Holliday junction DNA helicase RuvA [Granulibacter bethesdensis CGDNIH1] gi|114315937|gb|ABI61997.1| holliday junction DNA helicase ruvA [Granulibacter bethesdensis CGDNIH1] Length = 204 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 68/206 (33%), Positives = 117/206 (56%), Gaps = 4/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G ++GL ED LIDV GV Y++Y RTL+ L + + + +ET +R+D I L Sbjct: 1 MIGRLTGLVDGLEEDRCLIDVNGVGYVVYASSRTLAALPRAPEVARVLIETQVREDAITL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+ +R WF LL +VQGVGA+V + +LS ++A +L+ +++ + + + + G+ ++ Sbjct: 61 FGFIDTAERDWFRLLTTVQGVGAKVGLNILSALSAGDLISALMAGDQRALTRASGVGPRL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI++ELK K ++ + + +SAL+NLGY + +A A Sbjct: 121 AARIVSELKDKVGAM----PSGPMTIGGVGVLSAPAGGVEQDTLSALLNLGYRRPEALAA 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + V + A I+R LR ++ Sbjct: 177 IRRVREALGEEAGLDAILRQCLRELA 202 >gi|255320811|ref|ZP_05361986.1| holliday junction DNA helicase RuvA [Acinetobacter radioresistens SK82] gi|262379413|ref|ZP_06072569.1| Holliday junction DNA helicase RuvA [Acinetobacter radioresistens SH164] gi|255302188|gb|EET81430.1| holliday junction DNA helicase RuvA [Acinetobacter radioresistens SK82] gi|262298870|gb|EEY86783.1| Holliday junction DNA helicase RuvA [Acinetobacter radioresistens SH164] Length = 200 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 105/205 (51%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + L VL++V GV Y I P+ T L K G TL+ +R+D +L Sbjct: 1 MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F L V GVG ++A+G+LS ++ LV +I + + +IPG+ K Sbjct: 60 YGFSNAQEKTIFRTLLKVNGVGPKMALGILSTLSVELLVHTIEHDDLNTLVKIPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+M EL+ + +L+ + + + Q S A +AL +LGY +A A Sbjct: 120 AERLMIELRDRFKTLAQAATTSSTALPQIQFIA---NSPIAEAEAALQSLGYKPQEAQKA 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +V AD +IR AL+++ Sbjct: 177 VAAVKGDFSESAD---LIRAALKSM 198 >gi|269468816|gb|EEZ80420.1| Holliday junction resolvasome, DNA-binding subunit [uncultured SUP05 cluster bacterium] Length = 195 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 52/203 (25%), Positives = 100/203 (49%), Gaps = 10/203 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G I +L++V G+ Y I CP+ + +G + +L H+++D L Sbjct: 1 MIGQLTGKILEKNPPEILLEVGGIGYEILCPMSSFYEMGS-NENISLHTHFHVKEDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+S ++ F L V G+G +VA+ +LS + L+ ++ ++ ++A+ PGI K Sbjct: 60 YGFISKDEKILFRELIRVNGIGPKVALAILSHLNVASLMNAVANEDDALLAKTPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK + L ++S + + I A AL LG+ +A Sbjct: 120 AQKLIVELKDRLEKL------ELSSSAHQIITASNSNPNTIKASQALQALGFKTKEADRM 173 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 + ++ + ++IR AL+ Sbjct: 174 LNAI---NDDSLSIEELIRKALQ 193 >gi|84623202|ref|YP_450574.1| Holliday junction DNA helicase motor protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|161899002|ref|YP_200300.2| Holliday junction DNA helicase RuvA [Xanthomonas oryzae pv. oryzae KACC10331] gi|188577435|ref|YP_001914364.1| Holliday junction DNA helicase RuvA [Xanthomonas oryzae pv. oryzae PXO99A] gi|90146231|sp|Q5H2A6|RUVA_XANOR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|123725563|sp|Q2P577|RUVA_XANOM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560139|sp|B2STK2|RUVA_XANOP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|84367142|dbj|BAE68300.1| holliday junction binding protein DNA helicase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188521887|gb|ACD59832.1| holliday junction DNA helicase RuvA [Xanthomonas oryzae pv. oryzae PXO99A] Length = 194 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 61/204 (29%), Positives = 95/204 (46%), Gaps = 13/204 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +++IDV GV Y + P+ T L +G LF ++D + L Sbjct: 1 MIGRLRGILAYKQPPWLVIDVGGVGYELEAPMSTFYDLPDVGRDVILFTHYAQKEDSVSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + +R+ F +Q V G+GA++A+ VLS +T E I + + +IPGI K Sbjct: 61 YGFLREGERRLFRDVQKVTGIGAKIALAVLSGVTVDEFARLITSGDITALTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ +A SS P A AL LGY +A Sbjct: 121 AERMVVELRDRAADFSSGAP----------ITGQLGPDAISEATVALQQLGYKPAEAARM 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + +A IR AL+A Sbjct: 171 ARDAGAEGGEVATV---IRKALQA 191 >gi|78048836|ref|YP_365011.1| Holliday junction DNA helicase RuvA [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325929365|ref|ZP_08190495.1| Holliday junction DNA helicase subunit RuvA [Xanthomonas perforans 91-118] gi|90146217|sp|Q3BQF2|RUVA_XANC5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|78037266|emb|CAJ25011.1| Holliday junction DNA helicase RuvA [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325540277|gb|EGD11889.1| Holliday junction DNA helicase subunit RuvA [Xanthomonas perforans 91-118] Length = 194 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 60/204 (29%), Positives = 95/204 (46%), Gaps = 13/204 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +++IDV GV Y + P+ T L +G LF ++D + L Sbjct: 1 MIGRLRGILAYKQPPWLVIDVGGVGYELEAPMSTFYDLPDVGRDVILFTHYAQKEDSVAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + +R+ F +Q V G+GA++A+ VLS ++ E I + + +IPGI K Sbjct: 61 YGFLREGERRLFRDVQKVTGIGAKIALAVLSGVSVDEFARLITSGDITALTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ +A SS P A AL LGY +A Sbjct: 121 AERMVVELRDRAADFSSGAP----------ITGQLGPDAVSEATVALQQLGYKPAEAARM 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + +A IR AL+A Sbjct: 171 ARDAGAEGDEVATV---IRKALQA 191 >gi|225077350|ref|ZP_03720549.1| hypothetical protein NEIFLAOT_02410 [Neisseria flavescens NRL30031/H210] gi|224951342|gb|EEG32551.1| hypothetical protein NEIFLAOT_02410 [Neisseria flavescens NRL30031/H210] Length = 194 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + V+ID+ GV Y ++T L IG+ L+ + +R+D L Sbjct: 1 MISRLTGKLIEKNPPQVVIDINGVGYEADVSMQTFYNLPPIGETVHLYTQLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L V G+GA+ A+G+LS + A EL ++I ++ K ++ PGI K Sbjct: 61 FGFASAEERATFRQLVKVSGIGAKTALGILSAMNADELAQAIAEEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK +S V+ ++ + + I+ L+ LGY + +A A Sbjct: 121 AERMVLELRGKLVS---------HTVSDGLFAPAAVADESQDIINTLLALGYNEREAKAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + +RLAL+ + Sbjct: 172 TKGI----PKGTEVGEGVRLALKNL 192 >gi|83719212|ref|YP_441795.1| Holliday junction DNA helicase RuvA [Burkholderia thailandensis E264] gi|167580615|ref|ZP_02373489.1| Holliday junction DNA helicase motor protein [Burkholderia thailandensis TXDOH] gi|167618721|ref|ZP_02387352.1| Holliday junction DNA helicase motor protein [Burkholderia thailandensis Bt4] gi|257137961|ref|ZP_05586223.1| Holliday junction DNA helicase RuvA [Burkholderia thailandensis E264] gi|123753836|sp|Q2SZ54|RUVA_BURTA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|83653037|gb|ABC37100.1| Holliday junction DNA helicase RuvA [Burkholderia thailandensis E264] Length = 193 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + +L+D GV Y + P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGTLLEKNPPRILVDCNGVGYEVDVPMSTFYNLPHTGEKVVLLTQLIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L + GVGAR+A+ VLS ++ EL +++ LQ++ + ++PGI K Sbjct: 61 YGFLTPQERSTFRELLKITGVGARMALAVLSGMSVAELSQAVTLQDAARLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ++ + A S A + ++AL+ LGY + +A A Sbjct: 121 AERL-----------LLELKGKLGADLGPLAGAASPSDHAADILNALLALGYSEKEALAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +V S+ I+L+L+A+S Sbjct: 170 IKNV----PAGTGVSEGIKLSLKALS 191 >gi|326799497|ref|YP_004317316.1| Holliday junction ATP-dependent DNA helicase ruvA [Sphingobacterium sp. 21] gi|326550261|gb|ADZ78646.1| Holliday junction ATP-dependent DNA helicase ruvA [Sphingobacterium sp. 21] Length = 194 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G + YV++DV GV Y + + T + + C L+V +++D L Sbjct: 1 MYEYLNGKLAYKCPTYVVLDVNGVGYHVNISLYTFGKIKDC-EQCKLYVSFQVKEDAHSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F L SV G+GA +LS IT TE+ +I+ + K I +I GI K Sbjct: 60 YGFAEEGERRLFNHLLSVSGIGASTGRMILSSITPTEIQTAIVQGDVKQIQRIKGIGPKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL+ K + S A++ALV LG+ + QA Sbjct: 120 AQRIILELQDKLKKEG----------ADTLISVPQHQSVPEEALTALVMLGFNKAQAEKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + K ++I+ ALR + Sbjct: 170 LTEIQKNNAAQFTVEELIKEALRRL 194 >gi|323527310|ref|YP_004229463.1| Holliday junction DNA helicase RuvA [Burkholderia sp. CCGE1001] gi|323384312|gb|ADX56403.1| Holliday junction DNA helicase RuvA [Burkholderia sp. CCGE1001] Length = 193 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 103/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y + P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGVLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPSTGERVVLLTQMIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L + G+GAR+A+ VLS ++ EL +++ LQ++ + ++PGI K Sbjct: 61 YGFGTAEERSTFRELLKISGIGARMALAVLSGMSVHELSQTVTLQDAARLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ++ + A S A + ++AL+ LGY + +A A Sbjct: 121 AERL-----------LLELKGKLGADLGVMAGAVSASDHASDILNALLALGYSEKEALAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +V S+ I+LAL+A+S Sbjct: 170 IKNV----PAGTGVSEGIKLALKALS 191 >gi|261749358|ref|YP_003257043.1| Holliday junction DNA helicase motor protein [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497450|gb|ACX83900.1| Holliday junction DNA helicase motor protein [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 202 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 100/206 (48%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI ++G + + ++ID GV Y ++ T S L + G +++ ++++Q Sbjct: 1 MITHLRGKLIEKNQSSLIIDCNGVGYYLHISSYTYSSLLEEEGKEISIYTYLFIKENQHV 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF ++R+ F L SV G+G A+ +LS +T E+ ESI ++ +V Q+ GI K Sbjct: 61 LYGFFERIERKIFSHLISVNGIGPSSAITILSSLTPHEIKESISREDIEVFNQVKGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ ELK K S + + VN A+SAL+ LG+ ++ Sbjct: 121 TAQRIIIELKDKISISPSTIPKKGKNVNFFDKPPIF---IKKEALSALIVLGFSPKESKK 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + +L K +I+ +L+ + Sbjct: 178 VLEEILDKNPEF-TVENLIKESLKKL 202 >gi|17545220|ref|NP_518622.1| Holliday junction DNA helicase motor protein [Ralstonia solanacearum GMI1000] gi|20455245|sp|Q8Y235|RUVA_RALSO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|17427511|emb|CAD14029.1| probable holliday junction dna helicase ruva protein [Ralstonia solanacearum GMI1000] Length = 193 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 106/206 (51%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGEKVALLTQQIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F L + G+GAR+A+ VLS ++ EL +++ LQ + + +IPGI K Sbjct: 61 YGFGTAAERETFRQLIKISGIGARIALAVLSGMSVAELAQAVTLQEAGRLTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + V + A++ ++AL+ LGY +A A Sbjct: 121 AERLLLELKGKLGADLGTVPGGPAV-----------SDDAVDVLNALLALGYSDKEAAQA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + V S+ I+LAL+A+S Sbjct: 170 IKQV----PAGTGVSEGIKLALKALS 191 >gi|254559651|ref|YP_003066746.1| Holliday junction ATP-dependent DNA helicase ruvA [Methylobacterium extorquens DM4] gi|254266929|emb|CAX22728.1| Holliday junction ATP-dependent DNA helicase ruvA [Methylobacterium extorquens DM4] Length = 208 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 86/209 (41%), Positives = 130/209 (62%), Gaps = 5/209 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ ED+V++DV GV Y+++C RTL L K G+ L +ETH+R+D IRL Sbjct: 1 MIGKLKGIVDSYGEDFVILDVNGVGYVVHCSARTLQRLPKPGEATDLAIETHVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +R+WF LLQ+VQGVG RVA+GVLS + +L +I + +A+ PG+ ++ Sbjct: 61 YGFRVDAEREWFRLLQTVQGVGTRVALGVLSVLEPAQLATAIATGDKGAVARAPGVGPRL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+R++ ELK KA + + + ++ + P +AISALVNLGY Q QA+ A Sbjct: 121 AARLVAELKDKAPAFAPIDPALIALTGAVEDRTAPQP--VADAISALVNLGYAQIQASAA 178 Query: 181 VVSVLKKEKNIADDSQ---IIRLALRAIS 206 + + LK A + +IRL LR ++ Sbjct: 179 IAAALKGLGEEAGAVEAKTLIRLGLRELA 207 >gi|294501382|ref|YP_003565082.1| holliday junction DNA helicase RuvA [Bacillus megaterium QM B1551] gi|295706729|ref|YP_003599804.1| holliday junction DNA helicase RuvA [Bacillus megaterium DSM 319] gi|294351319|gb|ADE71648.1| holliday junction DNA helicase RuvA [Bacillus megaterium QM B1551] gi|294804388|gb|ADF41454.1| holliday junction DNA helicase RuvA [Bacillus megaterium DSM 319] Length = 203 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 98/205 (47%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + +YV+I+ G+ Y ++ P + + + T++ ++R+D I L Sbjct: 1 MFDYIKGTVTYINPEYVVIENNGIGYQVFTPNPYVFSIDE--QPKTVYTYQYVREDVIAL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S + FM L SV G+G + + +L+ ++V+++ ++ K + + PG+ K Sbjct: 59 YGFASREQKDLFMKLISVSGIGPKGGLAILASGNPAQVVQAVEEEDEKFLVKFPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK + + Q AI AL LGY + + Sbjct: 119 ARQMILDLKGKLHDIVPDAVPSLFADLDAQEVKSQSSEALDEAIEALKVLGYAEREIKKI 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +++K+ Q I+ AL+ + Sbjct: 179 VPALMKE---TMTTDQYIKEALKRL 200 >gi|319953601|ref|YP_004164868.1| holliday junction DNA helicase subunit ruva [Cellulophaga algicola DSM 14237] gi|319422261|gb|ADV49370.1| Holliday junction DNA helicase subunit RuvA [Cellulophaga algicola DSM 14237] Length = 193 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 100/205 (48%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + +V+I+ GV Y + + T S + + LF +++D L Sbjct: 1 MIHHLKGKLVEKNPTHVVIECGGVGYFVNISLHTFSKITDA-ENIQLFTHLQVKEDSHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R+ F LL SV G+GA +A +LS ++ ++ ++I N I I GI K Sbjct: 60 FGFSEKSEREIFRLLVSVSGIGASIARTMLSSMSPMQIRDAIATANVSAIQSIKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + + + + S + A+SAL LG+ + Q+ Sbjct: 120 AQRVILDLKDKILKIYDIDE----------VSSISNNTNKDEALSALEVLGFIRKQSEKI 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V VL ++ ++ II+L+L+ + Sbjct: 170 VDKVLAQDASL-SVEDIIKLSLKNL 193 >gi|295677647|ref|YP_003606171.1| Holliday junction DNA helicase RuvA [Burkholderia sp. CCGE1002] gi|295437490|gb|ADG16660.1| Holliday junction DNA helicase RuvA [Burkholderia sp. CCGE1002] Length = 193 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 103/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y + P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGVLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPSTGERIVLLTQMIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L + G+GAR+A+ VLS ++ EL +++ +Q++ + ++PGI K Sbjct: 61 YGFGTAQERATFRELLKISGIGARMALAVLSGMSVAELAQTVTMQDAARLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ++ + A S A + ++AL+ LGY + +A A Sbjct: 121 AERL-----------LLELKGKLGADLGAMAGATSPSDHASDILNALLALGYSEKEALAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +V S+ I+LAL+A+S Sbjct: 170 IKNV----PAGTGVSEGIKLALKALS 191 >gi|332663957|ref|YP_004446745.1| Holliday junction ATP-dependent DNA helicase ruvA [Haliscomenobacter hydrossis DSM 1100] gi|332332771|gb|AEE49872.1| Holliday junction ATP-dependent DNA helicase ruvA [Haliscomenobacter hydrossis DSM 1100] Length = 196 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 104/206 (50%), Gaps = 11/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++GNI Y++++ GV Y+++ + T S + + + + ++++D L Sbjct: 1 MITYLRGNITQKTPTYIVVETAGVGYLVHISLHTYSQI-EKKEEVKILTHLNIKEDSHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L SV GVG A +LS ++ EL +II + +V + GI K+ Sbjct: 60 YGFAEEAERSLFRHLISVSGVGPTTAQIMLSSLSPDELRAAIIGEQEQVFRAVKGIGPKM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K I S + N + A+SALV LG+ + A Sbjct: 120 AKRIILDLKDKLIKDSGDLPLTFPSQN---------NTIREEALSALVALGFQKIAVQKA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +LK + I + Q+I+LALR +S Sbjct: 171 LNHLLKDQA-IQNVEQLIKLALRELS 195 >gi|227538550|ref|ZP_03968599.1| crossover junction endodeoxyribonuclease [Sphingobacterium spiritivorum ATCC 33300] gi|227241469|gb|EEI91484.1| crossover junction endodeoxyribonuclease [Sphingobacterium spiritivorum ATCC 33300] Length = 194 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M G + +V++DV G+ Y I+ + T + L K + C LF+ +R+D L Sbjct: 1 MYEYFNGKLVFKAPTHVVLDVNGIGYYIHISLNTFA-LIKDQENCKLFISFQVREDSQTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +RQ F L SV G+G +LS IT E+ +II VI +I GI K Sbjct: 60 FGFATEGERQLFEHLISVSGIGPNTGRMILSSITPEEIQSAIINGQVAVIQKIKGIGPKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K + + + + S A+SAL+ LG+ ++QA Sbjct: 120 AQRLILELQDKLKKQGP---------DALISPVATKQSVPEEALSALIMLGFVKNQAEKV 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +++ E ++ Q+I+LAL+ + Sbjct: 171 LNTIINTEPDL-SVEQLIKLALKRL 194 >gi|295109923|emb|CBL23876.1| Holliday junction DNA helicase subunit RuvA [Ruminococcus obeum A2-162] Length = 203 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 101/204 (49%), Gaps = 2/204 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + E+ V+++ G+ Y I+ ++ + + H+R+D ++L Sbjct: 1 MISFIRGLVADTTENSVILEAGGIGYEIFMTGSSIEQASRSDGKVKIHTYFHVREDAMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS D + F LL +V G+G + A+GVL+ +TA EL +++ + K I++ PGI K Sbjct: 61 YGFLSRDDLEMFRLLLNVNGIGPKAALGVLAGLTADELRFAVLSDDIKTISRAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK K + ++ + A+ ALV LGY +A A Sbjct: 121 AQKLILELKDKLKLEDAFEKKLAHEQEAADISGSVLHDGRQEAVEALVALGYSSTEAMKA 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V V + D +++ AL+ Sbjct: 181 VRKVTDVSPD--DVEGLLKAALKL 202 >gi|270157092|ref|ZP_06185749.1| Holliday junction DNA helicase RuvA [Legionella longbeachae D-4968] gi|289164497|ref|YP_003454635.1| holliday junction DNA helicase [Legionella longbeachae NSW150] gi|269989117|gb|EEZ95371.1| Holliday junction DNA helicase RuvA [Legionella longbeachae D-4968] gi|288857670|emb|CBJ11513.1| holliday junction DNA helicase [Legionella longbeachae NSW150] Length = 198 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 101/207 (48%), Gaps = 12/207 (5%) Query: 1 MIGKIKGNIEGL-YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG + G+I ++++V GV Y + + T L + L + T +R+D + Sbjct: 1 MIGWLDGHIVDKYQPGKLVLNVHGVGYDVETSLNTFFKLDTLNGSVGLHIHTIVREDALL 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL +R+ F L V GVG ++AM +LS IT E +E I +N+ + ++PGI K Sbjct: 61 LYGFLDRQERELFRALIKVNGVGPKLAMSILSSITPNEFIECIQQENAVFLMKLPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E++ S + + ++ S A+SAL LGY +A Sbjct: 121 TAERLVVEMRDSLKQFSVPCSESLKSDHRM--------SDQDEAVSALEVLGYKPQEALK 172 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV V + Q+IR AL+ ++ Sbjct: 173 AVKKV---NDGVKSCEQLIRDALQVLA 196 >gi|315224590|ref|ZP_07866416.1| crossover junction ATP-dependent DNA helicase RuvA [Capnocytophaga ochracea F0287] gi|314945456|gb|EFS97479.1| crossover junction ATP-dependent DNA helicase RuvA [Capnocytophaga ochracea F0287] Length = 194 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 103/205 (50%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + YV+ID GV Y + + T S L + G+ L+ +++D L Sbjct: 1 MITQLQGKLVEKNPTYVVIDCHGVGYFVNISLNTYSALPE-GEAIKLYTYLQIKEDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R+ F+LL SV GVGA A +LS +TA ++ +II I + GI K Sbjct: 60 YGFLTKAEREVFVLLLSVSGVGASTARTMLSALTAAQVRNAIINGEVATIQAVKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + L + M+ V+ A++AL LG+ + QA Sbjct: 120 AQRVVLDLKDKMLKLQDFEEVPMNAVSTH----------KEEALAALEVLGFMRKQAEKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++K +II+ AL+ + Sbjct: 170 VDIIIKSSSEELSVEEIIKQALKRL 194 >gi|302384291|ref|YP_003820114.1| Holliday junction DNA helicase RuvA [Brevundimonas subvibrioides ATCC 15264] gi|302194919|gb|ADL02491.1| Holliday junction DNA helicase RuvA [Brevundimonas subvibrioides ATCC 15264] Length = 205 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 107/206 (51%), Gaps = 4/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ-IR 59 MIG+++G + + E + LID GV Y++ C RTL L GD TL V + +D R Sbjct: 1 MIGRLRGVVAEIEEGHCLIDCAGVGYVVACGARTLGRLPAPGDEATLHVHSQWSEDAGPR 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL+ +R+ F L +QGVG + A+ VL + EL ++ + I + G+ K Sbjct: 61 LYGFLARDERRAFTTLLGIQGVGPKAALSVLDVLPPGELAGAVARDDKAAIGRANGVGPK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 +A RI+TELKGK + V S +PS A+SAL+ LG + A Sbjct: 121 LALRIVTELKGKPL---GDVSFTPSVAGVHAEVAPPVPSVTGEAVSALLGLGVAEVNARR 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 AV L + + A+ S +IR AL+ + Sbjct: 178 AVDQALIRLGDAAELSAVIRAALQEL 203 >gi|307730947|ref|YP_003908171.1| Holliday junction DNA helicase RuvA [Burkholderia sp. CCGE1003] gi|307585482|gb|ADN58880.1| Holliday junction DNA helicase RuvA [Burkholderia sp. CCGE1003] Length = 193 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 102/206 (49%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y + P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGVLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPSTGERVVLLTQMIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L + G+GAR+A+ VLS ++ EL +++ LQ++ + ++PGI K Sbjct: 61 YGFGTAEERSTFRELLKISGIGARMALAVLSGMSVHELSQTVTLQDAARLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ++ + A S A + ++AL+ LGY + +A A Sbjct: 121 AERL-----------LLELKGKLGADLGAMAGAVSASDHASDILNALLALGYSEKEALAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +V S I+LAL+A+S Sbjct: 170 IKNV----PAGTGVSDGIKLALKALS 191 >gi|254787341|ref|YP_003074770.1| Holliday junction DNA helicase RuvA [Teredinibacter turnerae T7901] gi|259495657|sp|C5BQT5|RUVA_TERTT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|237687527|gb|ACR14791.1| Holliday junction DNA helicase RuvA [Teredinibacter turnerae T7901] Length = 206 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 103/206 (50%), Gaps = 4/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ GN+ +++D+ GV Y + P+ T L ++ L + + +L Sbjct: 1 MIGRLTGNLVVKQAPNLMVDINGVGYDLLAPMSTFYQLPELDAKVVLHTHFAVSETSQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+ DR++F +L V GVG ++A+G++S + ++V I+ N + ++PG+ K Sbjct: 61 FGFIDQQDREFFRMLIKVNGVGPKMAVGIMS-METNDIVRCILEDNLNALVKVPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCV-NKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E++ K S D + + S + A SALV LGY +A+ Sbjct: 120 AERLIIEMRDKLKSWQVTPSVDATGSLVALDSAAPSQNAIVAEAESALVALGYKPVEASK 179 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 AV V E I +IRLALR + Sbjct: 180 AVARVTSDE--ITRSEDLIRLALRNM 203 >gi|91776705|ref|YP_546461.1| Holliday junction DNA helicase RuvA [Methylobacillus flagellatus KT] gi|123253965|sp|Q1GYR7|RUVA_METFK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|91710692|gb|ABE50620.1| Holliday junction DNA helicase RuvA [Methylobacillus flagellatus KT] Length = 194 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 101/206 (49%), Gaps = 14/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + V+ID GV Y P+ T L G+ L + +R+D L Sbjct: 1 MIARLSGILVEKTPPQVVIDCHGVGYECEVPMSTFYNLPATGEKVVLLTQFIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF SD +R F L V GVGA+ A+ +LS ++ +L +++ LQ + ++ ++PGI K Sbjct: 61 YGFGSDQERATFRQLLKVNGVGAKSALAILSGLSVDDLAQAVALQETGLLIKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K A S + + ++AL+ LGY + +A A Sbjct: 121 AERLLLELKDKFAIDGGTA----------LAGSNPAKSASSDVLNALLALGYNEREALAA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + ++ I+L+L+++S Sbjct: 171 VKQL----PADIAVAEGIKLSLKSLS 192 >gi|13473339|ref|NP_104906.1| Holliday junction DNA helicase RuvA [Mesorhizobium loti MAFF303099] gi|20455256|sp|Q98F75|RUVA_RHILO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|14024088|dbj|BAB50692.1| Holliday branch migration protein; RuvA [Mesorhizobium loti MAFF303099] Length = 206 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 83/207 (40%), Positives = 131/207 (63%), Gaps = 3/207 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ + ED+ L+D+ GV Y+ YC RTL+ L G+ LF+ET++R+D +RL Sbjct: 1 MIGKLKGTLDEIDEDHCLVDIHGVGYVAYCSARTLAALPSPGEAVVLFIETYVREDMLRL 60 Query: 61 FGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GF S L+R+WF LL +V GVGA+VA+ +LS + +L +I L++ ++++ PG+ K Sbjct: 61 YGFQSALEREWFRLLLNNVPGVGAKVALAILSTLAPADLANAIALRDIAMVSRAPGVGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 +A RI+TELK KA + + + + + P +A+SALVNLGY +D A Sbjct: 121 VAERIVTELKNKAPAYAGAASGTIGLKQELGEGVAPAP--ITDAVSALVNLGYSRDTAAN 178 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV + LK AD S++IR L+ ++ Sbjct: 179 AVAAALKTAGEDADASKLIRFGLKELA 205 >gi|121601945|ref|YP_988488.1| Holliday junction DNA helicase motor protein [Bartonella bacilliformis KC583] gi|166230519|sp|A1UR85|RUVA_BARBK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|120614122|gb|ABM44723.1| Holliday junction DNA helicase RuvA [Bartonella bacilliformis KC583] Length = 217 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 76/213 (35%), Positives = 134/213 (62%), Gaps = 7/213 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ ++ED++++DVQGV Y+++ R LS L + G +LF+ETH+R+D IRL Sbjct: 1 MIGKLTGILDSVFEDHIILDVQGVGYVVFLSNRLLSSLPERGQAVSLFIETHVREDAIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++ WF LLQ+V+GVGA+VA+ +LS + +L ++I L + +I++ PG+ + Sbjct: 61 FGFETKVEQDWFCLLQNVRGVGAKVALAILSTLPPPQLAQAITLSDIAMISRSPGVGKMV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDM------SCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 + RI+ ELK KA+ ++ Q S + + + +++A++AL LG+ + Sbjct: 121 SERIINELKNKALPSNAPHQSMPHFVSYSSETSSQAGTQHTGHQHSMDALAALTKLGFER 180 Query: 175 DQATTAVVSVLKK-EKNIADDSQIIRLALRAIS 206 DQAT A+ +K E + +IR +L+ +S Sbjct: 181 DQATHALQEAIKAFEGETPSSALLIRHSLKLLS 213 >gi|153814820|ref|ZP_01967488.1| hypothetical protein RUMTOR_01035 [Ruminococcus torques ATCC 27756] gi|331089652|ref|ZP_08338551.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium 3_1_46FAA] gi|145847851|gb|EDK24769.1| hypothetical protein RUMTOR_01035 [Ruminococcus torques ATCC 27756] gi|330405020|gb|EGG84558.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium 3_1_46FAA] Length = 204 Score = 162 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 101/206 (49%), Gaps = 4/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + + E +IDV G+ Y ++ P + L+ L +G+ L+ ++R+D ++L Sbjct: 1 MISYVKGELAAIEEQKAIIDVGGIGYGVFMPHQALAMLPSVGNEVKLYTYLNVREDAMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ D + F L+ V G+G + + +LS ++ EL +I+ ++K+I+ PGI K Sbjct: 61 FGFLTKDDLEIFRLVIGVSGIGPKGGLNILSCMSPDELRFAIMSGDAKMISSAPGIGKKT 120 Query: 121 ASRIMTELKGKAI-SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +++ EL+ K + S A+ ALV LGYG ++ Sbjct: 121 AEKLIVELRDKVDIEKMLDHAAHPEETIQTDMAKTSANEMQSEAVQALVALGYGSAESLR 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 AV I++ AL+ + Sbjct: 181 AVKK---TSVQCQTVEDILKEALQYL 203 >gi|332527517|ref|ZP_08403569.1| Holliday junction DNA helicase RuvA [Rubrivivax benzoatilyticus JA2] gi|332111924|gb|EGJ11902.1| Holliday junction DNA helicase RuvA [Rubrivivax benzoatilyticus JA2] Length = 192 Score = 162 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 104/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L+DV GV Y + P+ T L +G+ L E +R+D +L Sbjct: 1 MIGRLSGTLAEKTPPQLLVDVGGVGYEVDVPMSTFYHLPALGERVVLLTEFVVREDAQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ +R F LL + GVG R+A+ +LS ++ EL +++ Q+ + ++PGI K Sbjct: 61 FGFLTASERATFRLLVKISGVGPRMALALLSGLSVAELSQAVAAQDGARLVKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + + + AL+ LGY + +A A Sbjct: 121 AERVLLELKGKLAPDLGLPSAAGGAGDAHAD-----------IVQALMALGYNEREAQAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 ++ K S+ I++AL+A++ Sbjct: 170 AKALPKDVG----VSEGIKVALKALN 191 >gi|167564063|ref|ZP_02356979.1| Holliday junction DNA helicase motor protein [Burkholderia oklahomensis EO147] gi|167571207|ref|ZP_02364081.1| Holliday junction DNA helicase motor protein [Burkholderia oklahomensis C6786] Length = 193 Score = 162 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y + P+ T L + L + +R+D L Sbjct: 1 MIGRIAGTLLEKNPPHILVDCNGVGYEVDVPMSTFYNLPHTSEKVVLLTQLIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L + GVGAR+A+ VLS ++ EL +++ LQ++ + ++PGI K Sbjct: 61 YGFLTPQERSTFRELLKITGVGARMALAVLSGMSVAELSQAVTLQDAARLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ++ + A S A + ++ALV LGY + +A A Sbjct: 121 AERL-----------LLELKGKLGADLGPLAGAASPSDHATDILNALVALGYSEKEALAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +V S+ I+L+L+A+S Sbjct: 170 IKNV----PAGTGVSEGIKLSLKALS 191 >gi|221134420|ref|ZP_03560725.1| Holliday junction DNA helicase RuvA [Glaciecola sp. HTCC2999] Length = 207 Score = 162 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 56/209 (26%), Positives = 99/209 (47%), Gaps = 7/209 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG I G + ++I G+ Y + + ++ L G T+F +R+D L Sbjct: 1 MIGLITGTLLAKQPPEIMIQAGGIGYEVSMSMHSIYALPTEGQPVTVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+ +R F L GVG ++A+ +LS ++ +L+ ++ ++ + +IPG+ K Sbjct: 61 FGFIEKEERTVFRELIKANGVGPKLAITILSGMSVQDLIRAVGYEDVSSLVKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSC----VNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ ELK + L+ + + + I + A+SALV LGY Sbjct: 121 AERLVVELKDRLAKLTLTQPNEALTLPVVSATDGSTIIPINDTREEALSALVALGYKAPV 180 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ + SV + Q+IR AL+A+ Sbjct: 181 ASKIIQSVY---DDTMSSEQLIRAALKAM 206 >gi|319409331|emb|CBI82975.1| holliday junction DNA helicase RuvA [Bartonella schoenbuchensis R1] Length = 211 Score = 162 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 78/207 (37%), Positives = 127/207 (61%), Gaps = 3/207 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ + +D++++DVQGV Y ++ R LS L +G+ LF+ETH+R + IRL Sbjct: 1 MIGKLKGILDSICDDHIILDVQGVGYSVFVSNRLLSSLPTLGEHLNLFIETHVRAEAIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R WF LLQ+V GVGA+VA+ +L ++ EL ++I L + +I + PGI K+ Sbjct: 61 FGFTTKAERDWFCLLQNVPGVGAKVALAILGTLSPGELAQAIALNDVAMIKRAPGIGQKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 + RI++E K KA+ + + + QA + P +A+SAL LG+ +DQA A Sbjct: 121 SERIISEFKNKALPFNEESKNTAHLASNLQAQETNQP--VNDALSALTKLGFDRDQAAQA 178 Query: 181 VVSVLKK-EKNIADDSQIIRLALRAIS 206 + L E+ + +IR +L+ +S Sbjct: 179 LSCALSSLEEETVSSALLIRHSLKLLS 205 >gi|319786205|ref|YP_004145680.1| Holliday junction DNA helicase RuvA [Pseudoxanthomonas suwonensis 11-1] gi|317464717|gb|ADV26449.1| Holliday junction DNA helicase RuvA [Pseudoxanthomonas suwonensis 11-1] Length = 196 Score = 162 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 97/204 (47%), Gaps = 11/204 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV GV Y + P+ T L ++G +LF ++D + L Sbjct: 1 MIGRLRGTLVLKQPPWLVVDVNGVGYELEAPMSTFYDLPELGREVSLFTHYAQKEDSVSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + +R+ F +Q V G+GA++A+ VLS ++ E + + + +IPGI K Sbjct: 61 YGFLRESERRLFRDVQKVSGIGAKIALAVLSGVSVDEFARLVQAGDVTALTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ + D++ + +A +AL LGY A Sbjct: 121 AERMVVELRDR--------AADLAGGGAVAGMTAAPGDPMADAATALQQLGYKPADAQRM 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 A IIR AL++ Sbjct: 173 ARDAAAPGDEAA---AIIRKALQS 193 >gi|291524757|emb|CBK90344.1| Holliday junction DNA helicase subunit RuvA [Eubacterium rectale DSM 17629] gi|291528922|emb|CBK94508.1| Holliday junction DNA helicase subunit RuvA [Eubacterium rectale M104/1] Length = 205 Score = 162 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 104/205 (50%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + D ++++ GV Y+IY P + L G+ ++ +R+D + L Sbjct: 4 MYAYIKGELAEKNIDSIVVEAAGVGYLIYIPTQYFDMLPDEGEDVKIYTYLCVREDAMIL 63 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS D + F LL +V G+G + + +LS + A +L +I+ +SK I++ PGI K Sbjct: 64 YGFLSKDDLEIFKLLITVSGIGPKGGLAILSTLPADDLRFAILSGDSKAISKAPGIGAKT 123 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + ++ + + A + + +A+ AL LGY ++ A Sbjct: 124 AQRVILDLKDKLSLEDAFEKKLENQTS--GAAVSMNSTVKNDAVMALNALGYSSTESLKA 181 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V D +++LAL+ + Sbjct: 182 VSKV--DITEDMDVEDVLKLALKNM 204 >gi|302879788|ref|YP_003848352.1| Holliday junction DNA helicase RuvA [Gallionella capsiferriformans ES-2] gi|302582577|gb|ADL56588.1| Holliday junction DNA helicase RuvA [Gallionella capsiferriformans ES-2] Length = 193 Score = 162 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 102/206 (49%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L+DVQGV Y + P+ T L + + L + +R+D L Sbjct: 1 MIGRLSGILLEKTPPQILLDVQGVGYELEVPMSTFYNLPPLHEKVVLHTQLIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L + GVG ++A+ VLS ++ +L +++ + + + +IPG+ K Sbjct: 61 YGFGSTDERIAFRQLLKISGVGPKLALSVLSGLSLNDLADAVANKEAGRLTKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK + + AH + S + + ++AL LGY +A A Sbjct: 121 AERLLLELEGKFTVMGVAM-----------AHGVPVTSASGDIVNALQALGYNDKEAALA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 K+ S IR AL+ +S Sbjct: 170 ----AKQLPKDVSVSDGIRQALKFLS 191 >gi|238924017|ref|YP_002937533.1| Holliday junction resolvasome, DNA-binding subunit [Eubacterium rectale ATCC 33656] gi|238875692|gb|ACR75399.1| Holliday junction resolvasome, DNA-binding subunit [Eubacterium rectale ATCC 33656] Length = 205 Score = 162 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 104/205 (50%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + D ++++ GV Y+IY P + L G+ ++ +R+D + L Sbjct: 4 MYAYIKGELAEKNIDSIVVEAAGVGYLIYIPTQYFDMLPDEGEDVKIYTYLCVREDAMIL 63 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS D + F LL +V G+G + + +LS + A +L +I+ +SK I++ PGI K Sbjct: 64 YGFLSKDDLEIFKLLITVSGIGPKGGLAILSTLPADDLRFAILSGDSKAISKAPGIGAKT 123 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + ++ + + A + + +A+ AL LGY ++ A Sbjct: 124 AQRVILDLKDKLSLEDAFEKKLENQAS--GAAVSMNSTVKNDAVMALNALGYSSTESLKA 181 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V D +++LAL+ + Sbjct: 182 VSKV--DITEDMDVEDVLKLALKNM 204 >gi|50085685|ref|YP_047195.1| Holliday junction DNA helicase RuvA [Acinetobacter sp. ADP1] gi|49531661|emb|CAG69373.1| holliday junction helicase subunit A [Acinetobacter sp. ADP1] Length = 204 Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 103/205 (50%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + L VL++V GV Y I P+ T L K G TL+ +R+D +L Sbjct: 4 MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQHVTLWTHLVVREDAQQL 62 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ ++ F L V GVG ++A+G+LS ++ + +I + + ++PG+ K Sbjct: 63 YGFIDAQEKLIFRTLLKVNGVGPKMALGILSTLSIELFIHTIEHDDINTLIKVPGVGRKT 122 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+M EL+ + +LS VQ S S A +AL +LGY +A A Sbjct: 123 AERLMIELRDRFKALS--VQATTGSTVTSAQIQFSSNSPIAEAEAALQSLGYKPIEAQKA 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +V AD +IR AL+++ Sbjct: 181 IAAVKADYTEAAD---LIRAALKSM 202 >gi|298206830|ref|YP_003715009.1| Holliday junction DNA helicase motor protein [Croceibacter atlanticus HTCC2559] gi|83849464|gb|EAP87332.1| Holliday junction DNA helicase motor protein [Croceibacter atlanticus HTCC2559] Length = 193 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 99/205 (48%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + +++D GV Y + + T L K + +F +R+D L Sbjct: 1 MITQLAGQLIEKNPTNIIVDCGGVGYFVNISLHTFG-LIKNEECVKIFTHLQVREDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R+ F LL V G+GA A +LS +T ++ E+I + I + GI +K Sbjct: 60 FGFAEKAEREVFRLLIGVSGIGASTARTMLSSLTPQQVTEAISQGDVATIQSVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K +++ + + S N + A+SAL LGY + Q+ Sbjct: 120 AQRVIIDLKDKILNVVGLDEVLPSQGNTQ----------KEEALSALETLGYTRKQSDKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +LK + A II+LAL+ + Sbjct: 170 VAGILKTDPE-ASVETIIKLALKKL 193 >gi|154504992|ref|ZP_02041730.1| hypothetical protein RUMGNA_02502 [Ruminococcus gnavus ATCC 29149] gi|153794875|gb|EDN77295.1| hypothetical protein RUMGNA_02502 [Ruminococcus gnavus ATCC 29149] Length = 375 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 105/205 (51%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + GL D ++DVQGV Y IY P ++LS LG IG + ++R+D ++L Sbjct: 176 MISYIRGELAGLERDKAIVDVQGVGYGIYMPEQSLSLLGPIGCEVKIHTYLNVREDAMQL 235 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ D + F L+ V G+G + + +LS ++A EL +++ ++K I PGI K Sbjct: 236 FGFLTRDDLEVFRLVIGVSGIGPKGGLNILSCLSADELKFAVLSGDAKAICAAPGIGKKT 295 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK K + + S E A+ ALV LGYG ++ A Sbjct: 296 AEKLIIELKDKLD--LKEMLEPRSAAAAEIPSDGRNGDIQTEAVQALVALGYGNAESLKA 353 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V +++ AL+ + Sbjct: 354 VRQV----TEYTSVEDVLKEALKKM 374 >gi|323186363|gb|EFZ71713.1| holliday junction DNA helicase RuvA [Escherichia coli 1357] Length = 187 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 51/187 (27%), Positives = 90/187 (48%), Gaps = 3/187 (1%) Query: 18 LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQS 77 LI+V GV Y ++ P+ L + G +F +R+D L+GF + +R F L Sbjct: 2 LIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIK 61 Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137 GVG ++A+ +LS ++A + V ++ + + ++PGI K A R++ E+K + L Sbjct: 62 TNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGLHG 121 Query: 138 VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQI 197 + + + + A++ALV LGY +A+ V + + A + Sbjct: 122 DLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRMVSKIAR---PDASSETL 178 Query: 198 IRLALRA 204 IR ALRA Sbjct: 179 IREALRA 185 >gi|270262223|ref|ZP_06190495.1| holliday junction ATP-dependent DNA helicase RuvA [Serratia odorifera 4Rx13] gi|270044099|gb|EFA17191.1| holliday junction ATP-dependent DNA helicase RuvA [Serratia odorifera 4Rx13] Length = 204 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VL++ GV Y ++ P+ L +G +F + +R+D L Sbjct: 1 MIGRLRGYILEKQPPLVLLEANGVGYEVHMPMTCFYELPDLGQEAIVFTQFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L V GVG ++A+ +LS ++A + V ++ + + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAVEREEITTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN-KEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + L+ + + S + A + A SALV LGY +A+ Sbjct: 121 AERLVVEMKDRFKGLNGDLFNNSSEITLPASATQAAELDAEAEAASALVALGYKPQEASR 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V + K AD +IR ALRA Sbjct: 181 MVSKIAK---PGADCETLIRDALRA 202 >gi|90134315|sp|Q6F992|RUVA_ACIAD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA Length = 201 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 103/205 (50%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + L VL++V GV Y I P+ T L K G TL+ +R+D +L Sbjct: 1 MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQHVTLWTHLVVREDAQQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ ++ F L V GVG ++A+G+LS ++ + +I + + ++PG+ K Sbjct: 60 YGFIDAQEKLIFRTLLKVNGVGPKMALGILSTLSIELFIHTIEHDDINTLIKVPGVGRKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+M EL+ + +LS VQ S S A +AL +LGY +A A Sbjct: 120 AERLMIELRDRFKALS--VQATTGSTVTSAQIQFSSNSPIAEAEAALQSLGYKPIEAQKA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +V AD +IR AL+++ Sbjct: 178 IAAVKADYTEAAD---LIRAALKSM 199 >gi|331091226|ref|ZP_08340067.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium 2_1_46FAA] gi|330404673|gb|EGG84212.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium 2_1_46FAA] Length = 201 Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 107/205 (52%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + + E+ +IDV GV Y I+ P +++ L + + L H+++D ++L Sbjct: 1 MISYIRGELVAVEEEKAVIDVGGVGYGIFMPAQSMGKLPPLHEEVRLHTYLHVKEDAMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ D + F L+ V G+G + A+ +LS ++A +L +++ + K I+ GI K Sbjct: 61 YGFLTRDDLKVFKLVIGVSGIGPKGALNILSNLSADDLRFAVLSNDVKAISAAQGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK K LS + +E A A+ ALV LGYG ++ A Sbjct: 121 AEKLIIELKDK---LSMDDVLEHMVQEEEVAVTGQNSGVQAEAVQALVALGYGNTESLRA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V + +D +++ ALR + Sbjct: 178 VRRV--EVNADSDVETVLKQALRFM 200 >gi|240144037|ref|ZP_04742638.1| holliday junction DNA helicase RuvA [Roseburia intestinalis L1-82] gi|257203963|gb|EEV02248.1| holliday junction DNA helicase RuvA [Roseburia intestinalis L1-82] gi|291536276|emb|CBL09388.1| Holliday junction DNA helicase subunit RuvA [Roseburia intestinalis M50/1] Length = 203 Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 106/206 (51%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + E+ ++++ G+ Y IY +T L +G+ ++ H+R+D + L Sbjct: 1 MYSYIKGILRDMDEESIVVETGGIGYHIYTTGQTFRYLPSVGEEVKVYTYLHVREDAMLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ + + + LL V G+G + A+ +LS +T +L +++ ++K IA+ PG+ K Sbjct: 61 FGFLTKDELKIYKLLLGVSGIGPKGALAILSVMTTDDLRFAVLGDDAKAIAKAPGVGTKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K +S + + A+ ALV LGY +A A Sbjct: 121 AQRLILELKDK---MSLEDAFEQKFEKTGEPAENHAQGTKNEAVQALVALGYSSSEALRA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + D +I+++AL+ ++ Sbjct: 178 LNGI--EITEETDVEEILKMALKNMA 201 >gi|187927480|ref|YP_001897967.1| Holliday junction DNA helicase RuvA [Ralstonia pickettii 12J] gi|309779818|ref|ZP_07674573.1| holliday junction DNA helicase RuvA [Ralstonia sp. 5_7_47FAA] gi|229560120|sp|B2UFL2|RUVA_RALPJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|187724370|gb|ACD25535.1| Holliday junction DNA helicase RuvA [Ralstonia pickettii 12J] gi|308921395|gb|EFP67037.1| holliday junction DNA helicase RuvA [Ralstonia sp. 5_7_47FAA] Length = 193 Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 106/206 (51%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGEKVVLLTQQIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F L + G+GAR+A+ VLS ++ EL +++ LQ + + +IPGI K Sbjct: 61 YGFGTAAERETFRQLIKISGIGARIALAVLSGMSVAELAQAVTLQEAGRLTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + V + A++ ++AL+ LGY +A A Sbjct: 121 AERLLLELKGKLGADLGTVPGGPAV-----------SDDAVDVLNALLALGYSDKEAALA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + V S+ I+LAL+A+S Sbjct: 170 IKQV----PAGTGVSEGIKLALKALS 191 >gi|294669790|ref|ZP_06734856.1| hypothetical protein NEIELOOT_01690 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308356|gb|EFE49599.1| hypothetical protein NEIELOOT_01690 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 194 Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 97/205 (47%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++IDV GV Y ++T L + + L+ + +R+D L Sbjct: 1 MISRLTGKLIEKQPPQIVIDVNGVAYEADVSMQTFYNLPPLNETVQLYTQLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L V G+GA+ A+G+LS +TA EL +++ ++ K ++ PGI K Sbjct: 61 FGFGTAAERATFRQLVKVSGIGAKTALGILSAMTADELAQAVAQEDVKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK V+ + I L+ LGY +A A Sbjct: 121 AERMILELRGKLSG---------GTVSDGLFAQPQAADETDDIIGTLLALGYSDREARAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + + + +RLAL+ + Sbjct: 172 VKGIA----PGTEVGEGVRLALKNL 192 >gi|281601276|gb|ADA74260.1| Holliday junction ATP-dependent DNA helicase ruvA [Shigella flexneri 2002017] gi|332766837|gb|EGJ97038.1| holliday junction DNA helicase RuvA [Shigella flexneri 2930-71] Length = 187 Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 89/187 (47%), Gaps = 3/187 (1%) Query: 18 LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQS 77 LI+V GV Y ++ P+ L + G +F +R+D L+GF + +R F L Sbjct: 2 LIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIK 61 Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137 GVG ++A+ +LS ++A + V ++ + + ++PGI K A R++ E+K + L Sbjct: 62 TNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGLHG 121 Query: 138 VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQI 197 + + + + A++ALV LGY +A+ V + + + Sbjct: 122 DLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRMVSKIAR---PDTSSETL 178 Query: 198 IRLALRA 204 IR ALRA Sbjct: 179 IREALRA 185 >gi|89889458|ref|ZP_01200969.1| Holliday junction DNA helicase ruvA [Flavobacteria bacterium BBFL7] gi|89517731|gb|EAS20387.1| Holliday junction DNA helicase ruvA [Flavobacteria bacterium BBFL7] Length = 193 Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + V+ID GV Y + + T S + + G+ LF +R+D RL Sbjct: 1 MIAQLQGKLVEKNLTDVVIDCGGVGYFVEISLHTYSLIPE-GELIKLFTFMQVREDSQRL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+ +R+ F LL SV G+GA A +LS + ++ ++I + + I + GI K Sbjct: 60 FGFMEKSEREVFKLLLSVSGIGASTARTMLSSLEPRQIAQAIASGDVRTIQSVKGIGAKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + + E + S + A+SAL LGY + QA Sbjct: 120 AQRVILDLKDKILQVLE----------GEDISLHSSNTGRDEALSALETLGYLRKQAQKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +L E + A +I+ AL+ + Sbjct: 170 VDKILASEPD-ASVETLIKGALKQL 193 >gi|319781019|ref|YP_004140495.1| Holliday junction DNA helicase RuvA [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166907|gb|ADV10445.1| Holliday junction DNA helicase RuvA [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 206 Score = 161 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 83/207 (40%), Positives = 131/207 (63%), Gaps = 3/207 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ + ED+ L+D+ GV Y+ YC RTL+ L G+ LF+ET++R+D +RL Sbjct: 1 MIGKLKGTLDEVDEDHCLVDIHGVGYVAYCSARTLAALPSPGEAVVLFIETYVREDMLRL 60 Query: 61 FGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GF S L+R+WF LL +V GVGA+VA+ +LS + +L +I L++ ++++ PG+ K Sbjct: 61 YGFQSVLEREWFRLLMNNVPGVGAKVALAILSTLAPADLANAIALRDIAMVSRAPGVGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 +A RI+TELK KA + + + + + S P +A+SALVNLGY +D A Sbjct: 121 VAERIVTELKNKAPAYAGTASGTIGLKQELGDGVASAP--ITDAVSALVNLGYSRDTAAN 178 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV + LK AD ++IR L+ ++ Sbjct: 179 AVAAALKTAGEDADAPKLIRFGLKELA 205 >gi|238786430|ref|ZP_04630350.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia bercovieri ATCC 43970] gi|238712664|gb|EEQ04756.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia bercovieri ATCC 43970] Length = 196 Score = 161 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 54/196 (27%), Positives = 94/196 (47%), Gaps = 5/196 (2%) Query: 11 GLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQ 70 VL++ GV Y + P+ L ++G +F + +R+D L+GF +R Sbjct: 2 EKQPPLVLLEANGVGYEVQLPMTCFYELPELGQEAIIFTQFIVREDAQLLYGFNDKQERA 61 Query: 71 WFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 F L V GVG ++A+ +LS ++A + V ++ ++ + ++PG+ K A R++ E+K Sbjct: 62 LFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKTAERLVVEMKD 121 Query: 131 KAISLSSVVQQDMSCVNKEQAHIC--SMPSFAINAISALVNLGYGQDQATTAVVSVLKKE 188 + L+ + + + + S A SALV LGY +A+ V + K Sbjct: 122 RFKGLNGDLFNNTGDITLPASSSSQLSDADIEAEAASALVALGYKPQEASRLVSKIAK-- 179 Query: 189 KNIADDSQIIRLALRA 204 AD +IR ALRA Sbjct: 180 -PGADCETLIRDALRA 194 >gi|256819155|ref|YP_003140434.1| Holliday junction DNA helicase RuvA [Capnocytophaga ochracea DSM 7271] gi|256580738|gb|ACU91873.1| Holliday junction DNA helicase RuvA [Capnocytophaga ochracea DSM 7271] Length = 194 Score = 161 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 104/205 (50%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + +V+ID GV Y + + T S L + G+ L+ +++D L Sbjct: 1 MITQLQGKLVEKNSTHVVIDCHGVGYFVNISLNTYSALPE-GEAIKLYTYLQIKEDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R+ F+LL SV GVGA A +LS +TA ++ +II + I + GI K Sbjct: 60 YGFLTKAEREVFVLLLSVSGVGASTARTMLSALTAAQVRNAIINGDVATIQAVKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + L + M+ V+ A++AL LG+ + QA Sbjct: 120 AQRVVLDLKDKMLKLQDFEEVPMNAVSTH----------KEEALAALEVLGFMRKQAEKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++K +II+ AL+ + Sbjct: 170 VDIIIKSSSEELSVEEIIKQALKRL 194 >gi|299135919|ref|ZP_07029103.1| Holliday junction DNA helicase RuvA [Acidobacterium sp. MP5ACTX8] gi|298602043|gb|EFI58197.1| Holliday junction DNA helicase RuvA [Acidobacterium sp. MP5ACTX8] Length = 198 Score = 161 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 66/202 (32%), Positives = 103/202 (50%), Gaps = 8/202 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G I + V++D GV Y + I T + LG G L V TH+R+D + L Sbjct: 1 MIAYLRGRILSKASNAVIVDCNGVGYELAISITTFTELGAEGAEAKLHVHTHVREDALAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +++ F L ++ G+G ++A+ VLS I+A LV +I + + +IPGI K Sbjct: 61 FGFAELTEKRLFEKLLTISGIGPKLAITVLSGISAERLVGAIRAGDHATLTKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + + + S+ + A + +SALVNLGY + A A Sbjct: 121 AERVVLELKDKLDDMVGSTPETGARF--------SLGTVADDVLSALVNLGYARPVAQKA 172 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 V + K D Q+ R A+ Sbjct: 173 VETAAKDAAVAGDFEQLFRAAM 194 >gi|329296286|ref|ZP_08253622.1| Holliday junction DNA helicase RuvA [Plautia stali symbiont] Length = 204 Score = 161 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 99/205 (48%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+ V Y ++ P+ L I +F + +R+D L Sbjct: 1 MIGRLRGIILEKQPPLVLIEAHCVGYEVHLPMTCFYELPDINQEAIIFTQFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L V GVG ++A+ +LS ++A + V ++ + + ++PG+ K Sbjct: 61 FGFNSKQERALFRELIKVNGVGPKLALAILSGMSAQQFVTAVEREEIASLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVV-QQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E+K + + + D + + A++ALV LGY +A+ Sbjct: 121 AERLVVEMKDRFKGMHGDLFGGDSAFTLTTPSAQQDNNDAEAEAVAALVALGYKPQEASR 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V V K AD +IR ALRA Sbjct: 181 MVSKV---GKPDADCETLIREALRA 202 >gi|15966503|ref|NP_386856.1| Holliday junction DNA helicase motor protein [Sinorhizobium meliloti 1021] gi|307300460|ref|ZP_07580240.1| Holliday junction DNA helicase RuvA [Sinorhizobium meliloti BL225C] gi|307318325|ref|ZP_07597760.1| Holliday junction DNA helicase RuvA [Sinorhizobium meliloti AK83] gi|20455253|sp|Q92M91|RUVA_RHIME RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|15075774|emb|CAC47329.1| Probable holliday junction DNA helicase [Sinorhizobium meliloti 1021] gi|306896007|gb|EFN26758.1| Holliday junction DNA helicase RuvA [Sinorhizobium meliloti AK83] gi|306904626|gb|EFN35210.1| Holliday junction DNA helicase RuvA [Sinorhizobium meliloti BL225C] Length = 205 Score = 161 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 95/206 (46%), Positives = 138/206 (66%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + ED+V++DV GV Y+ +C RTL LG G+ LF+ET++R+DQ++L Sbjct: 1 MIGKLKGTIDEIGEDHVVLDVHGVGYVAHCSARTLGKLGSAGEAAVLFIETYVREDQLKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLS L+R+WF LLQSVQGVG++VA+ VLS +T EL +I LQ+ I++ PG+ K+ Sbjct: 61 FGFLSALEREWFRLLQSVQGVGSKVALAVLSTLTPGELANAIALQDKTSISRAPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA + S + + K++ + +A+SAL NLGY +DQA A Sbjct: 121 AVRIVTELKNKAPAFSGEMAPSIGL--KQELGEGVAAAPVADAVSALTNLGYSRDQAANA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + LK D +++IRL L+ +S Sbjct: 179 VAAALKNGGEGGDSAKLIRLGLKELS 204 >gi|325528762|gb|EGD05824.1| Holliday junction DNA helicase RuvA [Burkholderia sp. TJI49] Length = 193 Score = 161 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 108/206 (52%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L + G+ L + +R+D L Sbjct: 1 MIGRIAGILLEKNPPHLLVDCNGVGYEIDVPMSTFYNLPQTGERVVLLTQQIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L + G+GAR+A+ VLS ++ EL + + +Q++ + ++PGI K Sbjct: 61 YGFLTPQERTTFRELLKITGIGARMALAVLSGMSVQELAQVVTMQDAARLTRLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + + + S A + ++ALV LGY + + A Sbjct: 121 AERLLLELKGKLGADLGALAGE-----------ASPSDHAADILNALVALGYSEKEGLAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +V S+ I+LAL+A+S Sbjct: 170 IKNV----PAGTGVSEGIKLALKALS 191 >gi|238796296|ref|ZP_04639805.1| Holliday junction DNA helicase RuvA [Yersinia mollaretii ATCC 43969] gi|238719741|gb|EEQ11548.1| Holliday junction DNA helicase RuvA [Yersinia mollaretii ATCC 43969] Length = 196 Score = 161 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 54/196 (27%), Positives = 93/196 (47%), Gaps = 5/196 (2%) Query: 11 GLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQ 70 VL++ GV Y + P+ L +G +F + +R+D L+GF +R Sbjct: 2 EKQPPLVLLETNGVGYEVQLPMTCFYELPDLGQEAIIFTQFVVREDAQLLYGFNDKQERA 61 Query: 71 WFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 F L V GVG ++A+ +LS ++A + V ++ ++ + ++PG+ K A R++ E+K Sbjct: 62 LFRELIKVNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKTAERLVVEMKD 121 Query: 131 KAISLSSVVQQDMSCVNKEQAHIC--SMPSFAINAISALVNLGYGQDQATTAVVSVLKKE 188 + L+ + + + + S A SALV LGY +A+ V + K Sbjct: 122 RFKGLNGDLFNNTGDITLPASTSSQISDADIEAEAASALVALGYKPQEASRLVSKIAK-- 179 Query: 189 KNIADDSQIIRLALRA 204 AD +IR ALRA Sbjct: 180 -PGADCETLIRDALRA 194 >gi|77919931|ref|YP_357746.1| Holliday junction DNA helicase RuvA [Pelobacter carbinolicus DSM 2380] gi|90135490|sp|Q3A231|RUVA_PELCD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|77546014|gb|ABA89576.1| Holliday junction DNA helicase subunit RuvA [Pelobacter carbinolicus DSM 2380] Length = 197 Score = 161 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 107/205 (52%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + V++DV GV Y + P+ T L GD L V TH+R+D + L Sbjct: 1 MIALLNGQLIEKTVSQVILDVGGVGYRLLIPLSTYYALPDEGD-VRLRVHTHVREDALLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL++ ++ F LL SV GVG +VA+ +LS + A +L +++ N+K +A +PGI K Sbjct: 60 FGFLTETEKDLFGLLLSVSGVGPKVALNILSHLPAADLQQALSQGNAKHLATVPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K + +V + +A+SALVNLGY ++ + A Sbjct: 120 AERLVLELREKVGPVQAVPGNAP-------LPAETAGDLREDALSALVNLGYKENLSRKA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + A I++ AL+ + Sbjct: 173 LDGI--DTAPDAPLEDILKQALKLL 195 >gi|241662010|ref|YP_002980370.1| Holliday junction DNA helicase RuvA [Ralstonia pickettii 12D] gi|240864037|gb|ACS61698.1| Holliday junction DNA helicase RuvA [Ralstonia pickettii 12D] Length = 193 Score = 161 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 106/206 (51%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGEKVVLLTQQIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F L + G+GAR+A+ VLS ++ EL +++ LQ + + +IPGI K Sbjct: 61 YGFGTAAERETFRQLIKISGIGARIALAVLSGMSVAELAQAVTLQEAGRLTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + V + A++ ++AL+ LGY +A A Sbjct: 121 AERLLLELKGKLGADLGAVPGGPAV-----------SDDAVDVLNALLALGYSDKEAALA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + V S+ I+LAL+A+S Sbjct: 170 IKQV----PAGTGVSEGIKLALKALS 191 >gi|254468402|ref|ZP_05081808.1| Holliday junction DNA helicase RuvA [beta proteobacterium KB13] gi|207087212|gb|EDZ64495.1| Holliday junction DNA helicase RuvA [beta proteobacterium KB13] Length = 189 Score = 161 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 54/206 (26%), Positives = 94/206 (45%), Gaps = 18/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG I+G + +V +D G+ Y I P+ T L ++ L V +R+D L Sbjct: 1 MIGSIRGILIDRSPPWVQVDCGGIGYEIEVPMSTYYHLPELQSDIFLHVHMVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ ++ F L + G+GA+VA+ +LS ++ + +I Q+ ++ +IPGI K Sbjct: 61 FGFLTKEEKSSFKSLIKINGIGAKVALSILSGVSMDQFSNAIEQQDVSLLVKIPGIGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + + + + AL LGY + Sbjct: 121 AERLIVELKDK--------------QDLKLQQSSQHSKNLTDIMDALEALGYSKSDIQKV 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + K + ++ I+ AL+ +S Sbjct: 167 I----KNFNEDINVNEGIKQALQWLS 188 >gi|167586148|ref|ZP_02378536.1| Holliday junction DNA helicase motor protein [Burkholderia ubonensis Bu] Length = 193 Score = 161 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L + G+ L + +R+D L Sbjct: 1 MIGRIAGILLEKNPPHLLVDCNGVGYEIDVPMSTFYNLPQTGERVVLLTQQIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS +R F L + G+GAR+A+ VLS ++ EL +++ +Q++ + ++PGI K Sbjct: 61 YGFLSPQERTTFRELLKITGIGARMALAVLSGMSVQELAQAVTMQDAARLTRLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ++ + A S A + ++AL+ LGY + + A Sbjct: 121 AERL-----------LLELKGKLGADLGTLAGAASPSDHATDILNALLALGYSEKEGLAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +V S+ I+LAL+A+S Sbjct: 170 IKNV----PAGTGVSEGIKLALKALS 191 >gi|94264074|ref|ZP_01287873.1| DNA recombination protein, RuvA:Helix-hairpin-helix motif [delta proteobacterium MLMS-1] gi|93455490|gb|EAT05680.1| DNA recombination protein, RuvA:Helix-hairpin-helix motif [delta proteobacterium MLMS-1] Length = 212 Score = 161 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 57/212 (26%), Positives = 106/212 (50%), Gaps = 6/212 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + D ++++V GV Y ++ P L G+ L+++T +R+D L Sbjct: 1 MIATLRGQLTQKGADSLIVEVGGVGYEVFFPAGRQDRLPPRGEELFLYIQTVVREDSFCL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ ++Q+F+LL V GVG R+AM +L+ L +I + + ++PG+ K Sbjct: 61 YGFVDAAEKQFFLLLLGVSGVGPRLAMNILAAAAPDVLGRAIATDDIAGLKKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSV--VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R+ ELK K + + + EQ +A SAL+NLGY +A Sbjct: 121 AERLCLELKDKVDFFPAAKPLARPDQAPPAEQGADFGAQPVFQDAYSALLNLGYPPVRAR 180 Query: 179 TAVVSVLKKEKNIADDS----QIIRLALRAIS 206 +A+ V ++ + +++R+ LR+++ Sbjct: 181 SALEEVRRQLEQEPAGELPLPELLRITLRSLA 212 >gi|299067939|emb|CBJ39153.1| subunit A of RuvABC Holliday junction resolvasome, regulatory subunit [Ralstonia solanacearum CMR15] Length = 193 Score = 161 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 106/206 (51%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGEKIALLTQQIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F L + G+GAR+A+ VLS ++ EL +++ LQ + + +IPGI K Sbjct: 61 YGFGTAAERETFRQLIKISGIGARIALAVLSGMSVAELAQAVTLQEAGRLTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + V + A++ ++AL+ LGY +A A Sbjct: 121 AERLLLELKGKLGADLGAVPGG-----------PVVSDDAVDVLNALLALGYSDKEAAQA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + V S+ I+LAL+A+S Sbjct: 170 IKQV----PAGTGVSEGIKLALKALS 191 >gi|86157379|ref|YP_464164.1| Holliday junction DNA helicase RuvA [Anaeromyxobacter dehalogenans 2CP-C] gi|123750528|sp|Q2IPJ6|RUVA_ANADE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|85773890|gb|ABC80727.1| Holliday junction DNA helicase subunit RuvA [Anaeromyxobacter dehalogenans 2CP-C] Length = 197 Score = 161 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G I +D+ ++DV GV Y+++ +L+ L G+ L V TH+R+D + L Sbjct: 1 MIARLAGRIAEKRDDHAIVDVGGVGYLVHVSQLSLASLPPPGEPAALRVYTHVREDALDL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ + F L V+GVG R A +LS I A EL +++ + + ++ GI K Sbjct: 61 YGFATEDEEAVFRALIDVKGVGPRAAQNILSGIEARELAQAVAQGDVARLTKVQGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K ++L+ A + +AL+NLGY QA Sbjct: 121 AERLVVELKDKLVALARAAG---------PARAGAEADVLDQLRTALLNLGYRPPQAEG- 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V L+ +++R AL+ + Sbjct: 171 VAEALRDSAEGRPLDELLREALKRL 195 >gi|253574942|ref|ZP_04852282.1| Holliday junction DNA helicase RuvA [Paenibacillus sp. oral taxon 786 str. D14] gi|251845988|gb|EES73996.1| Holliday junction DNA helicase RuvA [Paenibacillus sp. oral taxon 786 str. D14] Length = 206 Score = 161 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 99/205 (48%), Gaps = 2/205 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G I L +YV++DVQGV Y ++CP + K + T++ H+R+D I L Sbjct: 1 MIDFLRGQIAHLETEYVVLDVQGVGYRVFCP-NPYAFAAKGQETVTIYTHHHVREDAILL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++ F L V G+G RVA+G+LS + +V +I +N + ++PGI K Sbjct: 60 FGFPTREEQKLFRKLIEVSGIGPRVALGILSGGSPDHVVAAIHQENVSFLTKLPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + + + E P + A L LGY + + Sbjct: 120 AQRMILDLKDKLEGVGGTLFDPVPADVGETLGDDGNPGWP-EAREGLKALGYTEAELDKV 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +++ AL+ + Sbjct: 179 WHRLKDDVGPDEAVDSVMKKALKLL 203 >gi|312892324|ref|ZP_07751819.1| Holliday junction DNA helicase subunit RuvA [Mucilaginibacter paludis DSM 18603] gi|311295108|gb|EFQ72282.1| Holliday junction DNA helicase subunit RuvA [Mucilaginibacter paludis DSM 18603] Length = 194 Score = 161 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 99/205 (48%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + YV+ID GV Y I + T S + + C LF H+++D L Sbjct: 1 MYAYINGKLAFKCPTYVIIDAGGVGYHINISLNTYSNISD-KESCKLFTWLHVKEDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F+ L SV G+GA +LS IT E+ +II + +I +I GI K Sbjct: 60 YGFADEGERRLFLHLISVSGIGANTGRMILSSITPAEIQNAIIKGDVPLIQRIKGIGPKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL+ K ++ + + A+SALV LG+ ++ A Sbjct: 120 AQRIVLELQDKLRKDGP----------DTLINVPVIHTAKDEALSALVMLGFAKNVGEKA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + +K + Q+I++AL+ + Sbjct: 170 LDNAIKSTTDNLTVEQLIKIALKNL 194 >gi|311031507|ref|ZP_07709597.1| Holliday junction DNA helicase RuvA [Bacillus sp. m3-13] Length = 203 Score = 161 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 107/205 (52%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G +E + +YV+++V GV Y + P + + + T++ H+R+D + L Sbjct: 1 MIDFIRGFVEYVSPEYVVVEVMGVGYQVNAPNPFIYQVDR-DKEVTIYTYQHVREDILAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + D+ FM L +V G+G + A+ +L+ ++V +I ++ K + + PG+ K Sbjct: 60 YGFKTREDKNLFMKLLNVTGIGPKGALAILASGQPAQVVHAIENEDEKFLVKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK L D+ + E + + S A+ AL LGYG+ + Sbjct: 120 ARQIILDLKGKLNDLVPSAFPDLFQPDVEVSVPGASSSALEEALEALKVLGYGEREIKKI 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ K++ Q ++ AL+ + Sbjct: 180 VPALQKED---LSTDQYVKRALQLL 201 >gi|124002681|ref|ZP_01687533.1| holliday junction DNA helicase RuvA [Microscilla marina ATCC 23134] gi|123991909|gb|EAY31296.1| holliday junction DNA helicase RuvA [Microscilla marina ATCC 23134] Length = 194 Score = 161 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 96/203 (47%), Gaps = 10/203 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + +IDV GV Y I + T + L GD C L +R+D L Sbjct: 1 MFAYISGKLAHKEPTFAVIDVHGVGYQINISLNTYTALPISGD-CKLHTWLQVREDAQNL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +++ F+LL SV G+GA A+ +LS ++ +E+ +I ++ K I I GI +K Sbjct: 60 YGFTELAEKKLFLLLISVSGIGANTALVMLSSMSVSEIQTAIASEDVKAIKSIKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + + + A+ AL+ LGY ++ A Sbjct: 120 AQRVILELKDKVQKEVGSIAVTPA---------TQQSAVKDEAVMALITLGYAKNVAEKN 170 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V + K + N +I+ AL+ Sbjct: 171 VAKIFKTKGNDVKVEDVIKEALK 193 >gi|288957819|ref|YP_003448160.1| holliday junction DNA helicase [Azospirillum sp. B510] gi|288910127|dbj|BAI71616.1| holliday junction DNA helicase [Azospirillum sp. B510] Length = 208 Score = 161 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 73/208 (35%), Positives = 117/208 (56%), Gaps = 3/208 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+ G ++ D+V++DV GV Y++ C RTLS + +G+ +L VET +R+++I L Sbjct: 1 MIAKLTGIVDSTGTDWVVLDVNGVGYLLSCSNRTLSRMV-VGERLSLVVETFIREERIVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF +R WF LL ++QGVGAR+A+ +L + +L +I Q+ + + G+ K+ Sbjct: 60 HGFGDQAERDWFKLLTTIQGVGARLALSILGVLDPDQLTRAIAAQDKTALVRADGVGPKV 119 Query: 121 ASRIMTELKGKAIS--LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A+RI+ ELK K + L A + +A+SALVNLGYG+ +A Sbjct: 120 AARILNELKDKVGNLALGPAAAAGAPAGKGAPAAVPGASPALADAVSALVNLGYGRSEAF 179 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 AVV+ + + A S +IR L+ +S Sbjct: 180 GAVVAAGRVLGDDAGVSDLIRQGLKELS 207 >gi|186477304|ref|YP_001858774.1| Holliday junction DNA helicase RuvA [Burkholderia phymatum STM815] gi|229560012|sp|B2JGU4|RUVA_BURP8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|184193763|gb|ACC71728.1| Holliday junction DNA helicase RuvA [Burkholderia phymatum STM815] Length = 193 Score = 161 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 103/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++LID GV Y + P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGVLLEKNPPHLLIDCNGVGYEVDVPMSTFYNLPGTGEKVVLLTQMIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L + G+GAR+A+ VLS ++ EL +++ +Q++ + ++PGI K Sbjct: 61 YGFLTPQERSTFRELLKITGIGARMALAVLSGMSVQELSQTVTMQDAARLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ++ + A S A + ++AL+ LGY + + A Sbjct: 121 AERL-----------LLELKGKLGADLGAMAGAASQSDHASDILNALLALGYSEKEGLAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +V S+ I+LAL+A+S Sbjct: 170 IKNV----PAGTGVSEGIKLALKALS 191 >gi|300705140|ref|YP_003746743.1| subunit A of ruvABC holliday junction resolvasome, regulatory subunit [Ralstonia solanacearum CFBP2957] gi|299072804|emb|CBJ44159.1| subunit A of RuvABC Holliday junction resolvasome, regulatory subunit [Ralstonia solanacearum CFBP2957] Length = 193 Score = 161 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 102/206 (49%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGEKVVLLTQQIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R+ F L + G+GAR+A+ VLS ++ EL +++ LQ + + +IPGI K Sbjct: 61 YGFGSAAERETFRQLIKISGIGARIALAVLSGMSVAELAQAVTLQEAGRLTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ++ + +M A++ ++AL+ LGY +A A Sbjct: 121 AERL-----------LLELKGKLGADLGAAPGGPAMSDDAVDVLNALLALGYSDKEAALA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + V S+ I+LAL+A+S Sbjct: 170 IKQV----PAGTGVSEGIKLALKALS 191 >gi|255038209|ref|YP_003088830.1| Holliday junction DNA helicase RuvA [Dyadobacter fermentans DSM 18053] gi|254950965|gb|ACT95665.1| Holliday junction DNA helicase RuvA [Dyadobacter fermentans DSM 18053] Length = 196 Score = 161 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 104/203 (51%), Gaps = 7/203 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + Y +IDV GV Y + ++T + L IG C L ++R+D L Sbjct: 1 MIAYVNGIVTYKDPAYAIIDVNGVGYEVRISLQTYTSLPDIGARCKLVTFLNIREDAHVL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +++ F+ L S+ G+G A+ +LS ++++E+ + II ++ ++I I GI K Sbjct: 61 YGFWGNDEKKLFLDLTSISGIGPSTALVMLSSLSSSEIRQGIIDEDLRLIQSIKGIGSKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K V S S + A++ALV LG + A + Sbjct: 121 AQRVILELRDKIRKEELVSTGPRSVE-------ASSNTLRSEALAALVTLGIPKATAEKS 173 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 + +++K+E +I+LALR Sbjct: 174 LDAIIKREGPSISVENLIKLALR 196 >gi|149370922|ref|ZP_01890517.1| Holliday junction DNA helicase [unidentified eubacterium SCB49] gi|149355708|gb|EDM44266.1| Holliday junction DNA helicase [unidentified eubacterium SCB49] Length = 193 Score = 161 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 100/205 (48%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ ++G + V+++ GV Y I + T S L + L+ +R+D L Sbjct: 1 MVHHVQGKMIEKNPTDVVVECNGVGYFINISLHTFSQLPST-ENVLLYTHLQVREDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++R+ F LL SV GVGA +A +LS + +++++I+ ++ VI + GI K Sbjct: 60 YGFSTKVEREIFRLLISVSGVGASIARTMLSSLNPKQVMDAIVSEDVSVIQSVKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K I + + S + A+SAL LG+ + A Sbjct: 120 AQRVILDLKDKIIKVFGMS----------AISAVSSNTNKNEALSALETLGFARKVAEKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 ++++ A +II+ AL+ + Sbjct: 170 CDKIVQQHPE-ATVEEIIKHALKNL 193 >gi|134294766|ref|YP_001118501.1| Holliday junction DNA helicase RuvA [Burkholderia vietnamiensis G4] gi|166230530|sp|A4JBL3|RUVA_BURVG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|134137923|gb|ABO53666.1| Holliday junction DNA helicase RuvA [Burkholderia vietnamiensis G4] Length = 193 Score = 161 bits (406), Expect = 8e-38, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L + G+ L + +R+D L Sbjct: 1 MIGRIAGILLEKNPPHLLVDCNGVGYEIDVPMSTFYNLPQTGERVVLLTQQIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L + G+GAR+A+ VLS ++ EL +++ +Q++ + ++PGI K Sbjct: 61 YGFLTPQERTTFRELLKITGIGARMALAVLSGMSVQELAQAVTMQDAARLTRLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ++ + A S A + ++ALV LGY + + A Sbjct: 121 AERL-----------LLELKGKLGADLGALAGAASPSDHAADILNALVALGYSEKEGLAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +V S I+LAL+A+S Sbjct: 170 IKNV----PAGTGVSDGIKLALKALS 191 >gi|296283076|ref|ZP_06861074.1| Holliday junction DNA helicase RuvA [Citromicrobium bathyomarinum JL354] Length = 209 Score = 161 bits (406), Expect = 8e-38, Method: Composition-based stats. Identities = 68/206 (33%), Positives = 112/206 (54%), Gaps = 8/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+ G ++ D+ +IDV GV Y+++C RTL LG G LF + + ++ +RL Sbjct: 11 MIAKLTGTLDATGPDWAVIDVGGVGYLVHCSTRTLDALGSEGGEARLFTDLQVSENDMRL 70 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF +R WF LL SVQGVG++VA+ +LS ++A E+ + ++ ++A+ G+ K+ Sbjct: 71 LGFAEAAERDWFRLLTSVQGVGSKVALAILSVLSAGEVQAACASGDAAMVARANGVGPKL 130 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL+ KA +L A + +A+SAL NLG+ A A Sbjct: 131 AGRIVNELQDKAGALPVAPGG--------VAVAAPKGGASADAVSALENLGFKPAIAAKA 182 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + + A + ++IR+AL+ + Sbjct: 183 VAEAMGELGEGASEGELIRVALKKAA 208 >gi|207727946|ref|YP_002256340.1| holliday junction dna helicase ruva protein [Ralstonia solanacearum MolK2] gi|206591189|emb|CAQ56801.1| holliday junction dna helicase ruva protein [Ralstonia solanacearum MolK2] Length = 193 Score = 161 bits (406), Expect = 8e-38, Method: Composition-based stats. Identities = 67/206 (32%), Positives = 107/206 (51%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGEKVVLLTQQIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R+ F L + G+GAR+A+ VLS ++ EL +++ LQ + + +IPGI K Sbjct: 61 YGFGSAAERETFRQLIKISGIGARIALAVLSGMSVAELAQAVTLQEAGRLTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + V + M A++ ++AL+ LGY +A A Sbjct: 121 AERLLLELKGKLGADLGAVPGGPA-----------MSDDAVDVLNALLALGYSDKEAALA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + V S+ I+LAL+A+S Sbjct: 170 IKQV----PAGTGVSEGIKLALKALS 191 >gi|330815560|ref|YP_004359265.1| Holliday junction resolvasome, DNA-binding subunit [Burkholderia gladioli BSR3] gi|327367953|gb|AEA59309.1| Holliday junction resolvasome, DNA-binding subunit [Burkholderia gladioli BSR3] Length = 193 Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 103/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y + P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGTLLEKNPPHLLVDCNGVGYELDVPMSTFYNLPHTGERVVLLTQLIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L + G+GAR+A+ VLS ++ EL + + LQ+S + ++PGI K Sbjct: 61 YGFLTPQERTTFRELLKISGIGARMALAVLSGMSVQELSQVVTLQDSARLTRLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ++ + E A S A + ++AL+ LGY + +A A Sbjct: 121 AERL-----------LLELKGKLGADLGELAGQASQSDHAADILNALLALGYSEKEALAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +V S I+L+L+A+S Sbjct: 170 IKNV----PAGTGVSDGIKLSLKALS 191 >gi|311104199|ref|YP_003977052.1| holliday junction DNA helicase RuvA [Achromobacter xylosoxidans A8] gi|310758888|gb|ADP14337.1| holliday junction DNA helicase RuvA [Achromobacter xylosoxidans A8] Length = 190 Score = 160 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 102/205 (49%), Gaps = 17/205 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + + +DV G+ Y I P+ TL L G TL+ +R+D L Sbjct: 1 MIGRITGTLIEKLPPTICVDVGGLGYDIDVPMSTLYSLPDTGARVTLYTHLTVREDAHIL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L V G+GAR A+ VLS ++ +L ++I LQ S + ++PGI K Sbjct: 61 YGFASAGERSAFRELIKVSGIGARTALSVLSGLSVADLAQAITLQESGRLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++GK + A + P + ++AL+ LGY + ++ +A Sbjct: 121 AERLLLEMRGKLGA-------------DIGASPHAAPDNQSDILNALLALGYSEKESLSA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 LK S I+ AL+A+ Sbjct: 168 ----LKTLPEGVGVSDGIKQALKAL 188 >gi|78065251|ref|YP_368020.1| Holliday junction DNA helicase motor protein [Burkholderia sp. 383] gi|90134649|sp|Q39JJ0|RUVA_BURS3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|77965996|gb|ABB07376.1| DNA recombination protein, RuvA [Burkholderia sp. 383] Length = 193 Score = 160 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 105/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L + G+ L + +R+D L Sbjct: 1 MIGRIAGILLEKNPPHLLVDCNGVGYEIDVPMSTFYNLPQNGERVVLLTQQIVREDANLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L + G+GAR+A+ VLS ++ EL +++ +Q++ + ++PGI K Sbjct: 61 YGFLTPQERTTFRELLKITGIGARMALAVLSGMSVQELAQAVTMQDAARLTRLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ++ + E A S A + ++AL+ LGY + + A Sbjct: 121 AERL-----------LLELKGKLGADLGELAGAASPSDHATDILNALLALGYSEKEGLAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +V S+ I+LAL+A+S Sbjct: 170 IKNV----PAGTGVSEGIKLALKALS 191 >gi|83308729|emb|CAJ01639.1| holliday junction dna helicase, ruvA [Methylocapsa acidiphila] Length = 204 Score = 160 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 87/206 (42%), Positives = 130/206 (63%), Gaps = 3/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK++G ++ ED+V++DV GV YI++C RTL L ++G+ +L +ET MR+D +RL Sbjct: 1 MIGKLRGVVDSFGEDFVILDVNGVGYIVHCSSRTLQRLSRVGELASLAIETQMREDSLRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ DR WF LLQSVQGVGA+VA+ V + A+EL +I Q+ IA+ G+ K+ Sbjct: 61 FGFSTEADRDWFKLLQSVQGVGAKVALAVQGILEASELAAAIAFQDKAAIARASGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ ELK KA + ++ E A + P+ +AISALV LGYG+ QA A Sbjct: 121 AARIVAELKDKAPAAGG---AEVHLQAAEGASGQAAPTAVTDAISALVTLGYGRPQAAAA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + + A +++IR L+ +S Sbjct: 178 VAASVAALGEGAATAELIRRGLKELS 203 >gi|238026246|ref|YP_002910477.1| Holliday junction DNA helicase RuvA [Burkholderia glumae BGR1] gi|237875440|gb|ACR27773.1| Holliday junction resolvasome, DNA-binding subunit [Burkholderia glumae BGR1] Length = 193 Score = 160 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 104/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y + P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGTLLEKNPPHLLVDCNGVGYELDVPMSTFYNLPPTGERVVLLTQLIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L + G+GAR+A+ VLS ++ EL + + +Q++ + ++PGI K Sbjct: 61 YGFLTPQERSAFRELLKITGIGARMALAVLSGMSVQELSQVVTIQDAARLQRLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ++ + E A S A + ++AL+ LGY + +A A Sbjct: 121 AERL-----------LLELKGKLGADLGELAGQASQSDHAADILNALLALGYSEKEALAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +V S+ I+L+L+A+S Sbjct: 170 IKNV----PAGTGVSEGIKLSLKALS 191 >gi|170699606|ref|ZP_02890645.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria IOP40-10] gi|171319639|ref|ZP_02908733.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria MEX-5] gi|172059669|ref|YP_001807321.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria MC40-6] gi|229560008|sp|B1YTE0|RUVA_BURA4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|170135488|gb|EDT03777.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria IOP40-10] gi|171095130|gb|EDT40136.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria MEX-5] gi|171992186|gb|ACB63105.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria MC40-6] Length = 193 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L + G+ L + +R+D L Sbjct: 1 MIGRIAGILLEKNPPHLLVDCNGVGYEIDVPMSTFYNLPQTGERVVLLTQQIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L + G+GAR+A+ VLS ++ EL +++ +Q++ + ++PGI K Sbjct: 61 YGFLTPQERTTFRELLKITGIGARMALAVLSGMSVQELAQAVTMQDAARLTRLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ++ + A S A + ++ALV LGY + + A Sbjct: 121 AERL-----------LLELKGKLGADLGALAGAASQSDHATDILNALVALGYSEKEGLAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +V S+ I+LAL+A+S Sbjct: 170 IKNV----PAGTGVSEGIKLALKALS 191 >gi|256425896|ref|YP_003126549.1| Holliday junction DNA helicase RuvA [Chitinophaga pinensis DSM 2588] gi|256040804|gb|ACU64348.1| Holliday junction DNA helicase RuvA [Chitinophaga pinensis DSM 2588] Length = 195 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 102/205 (49%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + V IDVQGV Y + + T S + + C L H+++D L Sbjct: 1 MIAYLNGKLSYKSPAMVHIDVQGVGYEVQISLNTYSRIQGS-ESCKLLTYLHIKEDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F+LL SV G+GA A +LS + ++ +I ++N K++ I GI K Sbjct: 60 YGFADDAERQMFLLLISVSGIGANTARMMLSSLQPEDIQRAIAMENEKMLESIKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + Q + + +A++ALV LG ++ A A Sbjct: 120 AKRVILELKDKVKKQKDI---------GNQISVTPNNTIQEDALNALVTLGIARNVAEQA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK E + D +I+ +L+ + Sbjct: 171 INKVLKAEPLLLDLEALIKKSLKGL 195 >gi|46445654|ref|YP_007019.1| Holliday junction DNA helicase [Candidatus Protochlamydia amoebophila UWE25] gi|81627839|sp|Q6MFA5|RUVA_PARUW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|46399295|emb|CAF22744.1| probable Holliday junction DNA helicase [Candidatus Protochlamydia amoebophila UWE25] Length = 201 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 58/203 (28%), Positives = 106/203 (52%), Gaps = 4/203 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + ++DV GV Y+++ P R L L +IG+ + +R+ L Sbjct: 1 MFAYIKGVLAFFNPSQAIVDVHGVGYLLFIPCRLLGQLPQIGEPVQFYTTYVVREFSHTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS +R F +L +V G+G ++A+ ++ ++ +EL +++ Q+ + ++PG+ K Sbjct: 61 YGFLSYQERDIFEILMNVTGIGPKMALSLIGHLSMSELQIAVMRQDLSTLCRVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K ++ + D + E +A+ AL+NLGY Q A A Sbjct: 121 AERLIVELKDKLAAIGHLDTSD----HIEPLTQDPKSKSVQDAMLALINLGYNQTTAQKA 176 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 + +K+ D +Q+I +AL+ Sbjct: 177 IKQGMKELPEEIDLAQLITVALK 199 >gi|293603639|ref|ZP_06686060.1| crossover junction ATP-dependent DNA helicase RuvA [Achromobacter piechaudii ATCC 43553] gi|292818075|gb|EFF77135.1| crossover junction ATP-dependent DNA helicase RuvA [Achromobacter piechaudii ATCC 43553] Length = 190 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 103/206 (50%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + + +DV G+ Y I + TL L + G TL+ +R+D L Sbjct: 1 MIGRITGTLIEKLPPTICVDVGGLGYDIDVSMTTLYSLPETGARVTLYTHLTVREDAHIL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+GAR A+ VLS ++ +L ++I LQ S + ++PGI K Sbjct: 61 YGFGTAGERSAFRELIKVSGIGARTALSVLSGMSVADLAQAITLQESGRLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++GK + A + P + ++AL+ LGY + ++ +A Sbjct: 121 AERLLLEMRGKLGA-------------DIGAASHATPDHQSDILNALLALGYSEKESLSA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 LK S I+ AL+A++ Sbjct: 168 ----LKGLPEGVGVSDGIKQALKALA 189 >gi|83749323|ref|ZP_00946320.1| RuvA [Ralstonia solanacearum UW551] gi|207742352|ref|YP_002258744.1| holliday junction dna helicase ruva protein [Ralstonia solanacearum IPO1609] gi|83724001|gb|EAP71182.1| RuvA [Ralstonia solanacearum UW551] gi|206593742|emb|CAQ60669.1| holliday junction dna helicase ruva protein [Ralstonia solanacearum IPO1609] Length = 193 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 106/206 (51%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGEKVVLLTQQIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R+ F L + G+GAR+A+ VLS ++ EL +++ LQ + + +IPGI K Sbjct: 61 YGFGSAAERETFRQLIKISGIGARIALAVLSGMSVAELAQAVTLQEAGRLTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + V + M ++ ++AL+ LGY +A A Sbjct: 121 AERLLLELKGKLGADLGAVPGGPA-----------MSDDTVDVLNALLALGYSDKEAALA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + V S+ I+LAL+A+S Sbjct: 170 IKQV----PAGTGVSEGIKLALKALS 191 >gi|87198447|ref|YP_495704.1| Holliday junction DNA helicase RuvA [Novosphingobium aromaticivorans DSM 12444] gi|123722701|sp|Q2GBA3|RUVA_NOVAD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|87134128|gb|ABD24870.1| Holliday junction DNA helicase RuvA [Novosphingobium aromaticivorans DSM 12444] Length = 204 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 70/206 (33%), Positives = 118/206 (57%), Gaps = 3/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+ G ++ D+ +IDV GV Y+++C +TL+ LG GD + E + + RL Sbjct: 1 MIAKLTGILDDTGPDWAVIDVNGVGYLVHCSAKTLTHLGLRGDKVVVHTEMQVSETDQRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF S +R WF LL +VQGVG++VA+ +LS ++ EL + +S ++A+ G+ K+ Sbjct: 61 IGFTSAGERAWFRLLTAVQGVGSKVALAILSALSVEELQRACAHGDSAMVARANGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ ELK KA L+ +A + + + +A+SAL NLG+ A++A Sbjct: 121 ASRIVNELKDKAGGLAGYASP---VGPGGEAFVAPPGNASADAVSALQNLGFKPAVASSA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + +K+ A + ++R+AL+ + Sbjct: 178 VAAAVKELGEDAGLNDLVRVALKRAA 203 >gi|254473163|ref|ZP_05086561.1| Holliday junction DNA helicase RuvA [Pseudovibrio sp. JE062] gi|211957884|gb|EEA93086.1| Holliday junction DNA helicase RuvA [Pseudovibrio sp. JE062] Length = 204 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 85/206 (41%), Positives = 133/206 (64%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ +D+VL+DVQGVCY ++CP R L L ++G+ L +ET +R+D I+L Sbjct: 1 MIGKLKGVVDSYGDDFVLLDVQGVCYQVHCPSRVLQQLPRVGEAAVLAIETMVREDMIKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF D +R+WF +L +VQGVGA+VA+G+L + A+E+ +I L + I + PG+ ++ Sbjct: 61 FGFAEDSEREWFRILMTVQGVGAKVALGILGIMKASEVANAIALGDKTAITRAPGVGKRV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA + +SV ++ ++ S P +A+SAL NLGY QA+ A Sbjct: 121 AERIVTELKDKAPAFASVEDDTIAVSQSVAENVASRP--VADAVSALSNLGYQPAQASAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + +K A ++IRL L+ ++ Sbjct: 179 VAAAVKTAGEDASAEKLIRLGLKELA 204 >gi|115350636|ref|YP_772475.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria AMMD] gi|122324004|sp|Q0BI82|RUVA_BURCM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|115280624|gb|ABI86141.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria AMMD] Length = 193 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L + G+ L + +R+D L Sbjct: 1 MIGRIAGILLEKNPPHLLVDCNGVGYEIDVPMSTFYNLPQTGERVVLLTQQIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L + G+GAR+A+ VLS ++ EL +++ +Q++ + ++PGI K Sbjct: 61 YGFLTPQERTTFRELLKITGIGARMALAVLSGMSVQELAQAVTMQDAARLTRLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ++ + A S A + ++ALV LGY + + A Sbjct: 121 AERL-----------LLELKGKLGADLGALAGAASQSDHAADILNALVALGYSEKEGLAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +V S+ I+LAL+A+S Sbjct: 170 IKNV----PAGTGVSEGIKLALKALS 191 >gi|206561676|ref|YP_002232441.1| Holliday junction DNA helicase RuvA [Burkholderia cenocepacia J2315] gi|229560010|sp|B4EES6|RUVA_BURCJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|198037718|emb|CAR53661.1| holliday junction DNA helicase [Burkholderia cenocepacia J2315] Length = 193 Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 104/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L + G+ L + +R+D L Sbjct: 1 MIGRIAGILLEKNPPHLLVDCNGVGYEIDVPMSTFYNLPQTGERVVLLTQQIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L + G+GAR+A+ VLS ++ EL +++ +Q++ + ++PGI K Sbjct: 61 YGFLTQQERTTFRELLKITGIGARMALAVLSGMSVQELAQAVTMQDAARLTRLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ++ + A S A + ++AL+ LGY + + A Sbjct: 121 AERL-----------LLELKGKLGADLGALAGAASPSDHATDILNALLALGYSEKEGLAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +V S+ I+LAL+A+S Sbjct: 170 IKNV----PAGTGVSEGIKLALKALS 191 >gi|163796368|ref|ZP_02190329.1| elongation factor P [alpha proteobacterium BAL199] gi|159178510|gb|EDP63052.1| elongation factor P [alpha proteobacterium BAL199] Length = 208 Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 120/207 (57%), Gaps = 1/207 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+KG ++ + +IDV GV Y+++ RTL+ LG+ G ++ V+TH+R+D I L Sbjct: 1 MIAKLKGLLDSTGDGMAVIDVGGVGYLVFASARTLTALGEPGSAVSVLVDTHVREDHIHL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F +LQ+VQGVGA+ A+ +LS ++ ++ +I Q+ ++ + G+ K+ Sbjct: 61 YGFASAAERSCFRMLQTVQGVGAKHALSILSVLSPEDVFTAIAAQDRVMLTRADGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC-SMPSFAINAISALVNLGYGQDQATT 179 RI+ ELK K ++++ + D + + A +A+SAL NLGYG+ +A Sbjct: 121 GQRIVNELKDKTVNVALGLGADATGPARAAAVAGQPGDDTVADAVSALSNLGYGRAEAYG 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV + + ++I LAL+ ++ Sbjct: 181 AVSTARQALGEGVALDKLITLALKELA 207 >gi|326791465|ref|YP_004309286.1| Holliday junction DNA helicase RuvA [Clostridium lentocellum DSM 5427] gi|326542229|gb|ADZ84088.1| Holliday junction DNA helicase RuvA [Clostridium lentocellum DSM 5427] Length = 197 Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 106/205 (51%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + E+ ++I+V GV Y ++C RTLS L + +++ H+++D L Sbjct: 1 MITYLVGTLEHIGENTLVIEVYGVGYEVFCSSRTLSELNGTREKVKIYIHEHIKEDGHDL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF DR+ F L SV G+G + M V + ++ E++E I+ Q+SK ++++ GI K Sbjct: 61 YGFYHMEDRELFRKLISVSGIGPKGGMQVFNTYSSQEVIEIILNQDSKALSKVSGIGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK L + K++ S AI AL LGY +A A Sbjct: 121 AQRIILELKDSIGKLFVPDLSLLETGLKDE-------SAKAEAIEALEALGYAAQEARKA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ A+ ++I+ AL + Sbjct: 174 VEAIY---DYKANSEELIKKALSLL 195 >gi|124268420|ref|YP_001022424.1| Holliday junction DNA helicase RuvA [Methylibium petroleiphilum PM1] gi|166230565|sp|A2SKV0|RUVA_METPP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|124261195|gb|ABM96189.1| holliday junction DNA helicase [Methylibium petroleiphilum PM1] Length = 192 Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 100/206 (48%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+G++ G + VLIDV GV Y + P+ + L IG+ TL +R+D L Sbjct: 1 MLGRLTGLLAEKSPPQVLIDVGGVGYEVDVPMSSFFNLPAIGEKVTLLTHFVVREDAQVL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ +R+ F +L + GVG R A+ +LS +T +L +++ Q++ + ++PGI K Sbjct: 61 FGFLTAPERETFRMLIKISGVGPRTALSILSGLTVGDLAQAVTAQDASRLVKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ++ + + + AL+ LGY + +A A Sbjct: 121 AERL-----------LLELKGKLGADLGPAIGGKPASDAQADILQALIALGYSEREAQAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V ++ + S I+LAL+A++ Sbjct: 170 VKALPAEVG----VSDGIKLALKALA 191 >gi|114570973|ref|YP_757653.1| Holliday junction DNA helicase RuvA [Maricaulis maris MCS10] gi|122315334|sp|Q0ALX8|RUVA_MARMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|114341435|gb|ABI66715.1| Holliday junction DNA helicase RuvA [Maricaulis maris MCS10] Length = 213 Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 76/213 (35%), Positives = 116/213 (54%), Gaps = 8/213 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + L D +++DV GV Y++ RTLS L + L +ETH+R+D +L Sbjct: 1 MIGMLTGRVAALGADELVLDVSGVGYLVGAGARTLSRL-EPDQDIVLHIETHVREDAFKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL D+DR WF+ LQ++QGVGA+ A +L + +E+ + L + A+ G+ K+ Sbjct: 60 YGFLDDIDRAWFVHLQNIQGVGAKAAFAILDTVPVSEIANAAALGDKSTFARAKGVGPKL 119 Query: 121 ASRIMTELKGKAISLS-------SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 A+RI TELK KA V D + A +A+SALVNLGY Sbjct: 120 ATRIATELKDKAPPTGRSFSIGLPVHSDDGTTGGAPVAPAGGDSLAREDAVSALVNLGYN 179 Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 + QA AV +L+ + A +IRL+L+ ++ Sbjct: 180 ESQARQAVAKILRDADSEAPLGDVIRLSLKELA 212 >gi|149196353|ref|ZP_01873408.1| Holliday junction DNA helicase motor protein [Lentisphaera araneosa HTCC2155] gi|149140614|gb|EDM29012.1| Holliday junction DNA helicase motor protein [Lentisphaera araneosa HTCC2155] Length = 206 Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 57/207 (27%), Positives = 100/207 (48%), Gaps = 3/207 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + L +IDV GV Y + P+ T L K+G L + +R+D + L Sbjct: 1 MIAHLKGQLVELELSNAVIDVGGVGYYVDIPMSTYDRLPKVGSPVALRIHMTVREDAMNL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +D +R +F ++ SV G+G ++A+ LS + E+I N K++++I G+ ++ Sbjct: 61 YGFATDEERSFFRMITSVSGIGPKIALAALSALPTETFCEAIQEGNIKLLSKISGVGKRM 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K +L + + + ++I AL LGY D Sbjct: 121 AERMVVELRDKVGALGMTSAFVAKVADDDMS--AQDKEAFNDSIMALEALGYRPDTIRKT 178 Query: 181 VVSVLKKE-KNIADDSQIIRLALRAIS 206 V ++ II+ AL A++ Sbjct: 179 VKTIFDGLSPAQRSSENIIKAALSAMN 205 >gi|255526659|ref|ZP_05393564.1| Holliday junction DNA helicase RuvA [Clostridium carboxidivorans P7] gi|296187164|ref|ZP_06855561.1| Holliday junction DNA helicase RuvA [Clostridium carboxidivorans P7] gi|255509639|gb|EET85974.1| Holliday junction DNA helicase RuvA [Clostridium carboxidivorans P7] gi|296048199|gb|EFG87636.1| Holliday junction DNA helicase RuvA [Clostridium carboxidivorans P7] Length = 197 Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 110/205 (53%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I+G G+ +DY++++ G+ Y IY TL+ + KI + L+++ +R+D I L Sbjct: 1 MYEYIRGTYAGMNKDYIVVENNGIGYKIYTSGSTLAKIPKINEEIMLYLQQIVREDFIGL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + F LL S+ GVGA+ A+ +LS + L +I+ + K+I + PGI K+ Sbjct: 61 YGFLTKEELSMFNLLLSINGVGAKAALSLLSISSVNNLKYAILSGDEKLITRAPGIGKKM 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 + RI+ ELK K +D+ + I + A+ ALV LGY + +A A Sbjct: 121 SQRIILELKDKVK------PEDVDISQGDTIEIDETAGNSSEALEALVALGYSEKEANKA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ KK+ IIR AL+ + Sbjct: 175 INTIDKKD----SVENIIRNALKFL 195 >gi|160879481|ref|YP_001558449.1| Holliday junction DNA helicase RuvA [Clostridium phytofermentans ISDg] gi|189045749|sp|A9KNV9|RUVA_CLOPH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|160428147|gb|ABX41710.1| Holliday junction DNA helicase RuvA [Clostridium phytofermentans ISDg] Length = 203 Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 63/203 (31%), Positives = 102/203 (50%), Gaps = 2/203 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ I+G + + E+YV++D G+ Y I+ P S L IGD +R+D + L Sbjct: 1 MLAFIQGELAEVKENYVVVDNNGMGYEIFIPHTVHSYLPAIGDKVKFHTYLQVREDGMAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ D F LL +V G+G + A+G+LS I+ +L +++ ++ K I++ PGI K Sbjct: 61 FGFLNREDLAMFKLLITVNGIGPKGAIGILSAISTDDLRFAVLAEDVKAISKAPGIGTKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+++ ELK K + S + AI ALV LGY A A Sbjct: 121 ASKLILELKDKFKLEDAFEATFQSNQVISTGGKGNNDGIREEAIQALVALGYSATDALKA 180 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V +V + + +++ +LR Sbjct: 181 VKAV--EITSNMTSEDVLKFSLR 201 >gi|289209177|ref|YP_003461243.1| Holliday junction DNA helicase RuvA [Thioalkalivibrio sp. K90mix] gi|288944808|gb|ADC72507.1| Holliday junction DNA helicase RuvA [Thioalkalivibrio sp. K90mix] Length = 201 Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 58/204 (28%), Positives = 96/204 (47%), Gaps = 7/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + + V+ID GV Y + P+ TL+ L + G L +R+D +L Sbjct: 1 MIARLEGTLISREVNGVVIDAGGVGYEVEVPLSTLAALPEPGATVVLTTHLVVREDAHQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+ DR F L V G+GA++A+ +LS EL I + +A++PGI + Sbjct: 61 FGFMHKRDRDLFRRLIRVNGIGAKLALAMLSTYAGDELAGLISGGDVTGLAKVPGIGKRT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL + + + + A++AL +LGY + A Sbjct: 121 AERVVLELGERLAEMGFAAAPGGADAGADIPGAAMDG----EALAALESLGYPRASAEKM 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V +V + ++RLALRA Sbjct: 177 VAAVRDQAD---SVESLVRLALRA 197 >gi|260576656|ref|ZP_05844643.1| Holliday junction DNA helicase RuvA [Rhodobacter sp. SW2] gi|259021141|gb|EEW24450.1| Holliday junction DNA helicase RuvA [Rhodobacter sp. SW2] Length = 224 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 79/222 (35%), Positives = 121/222 (54%), Gaps = 17/222 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGKI G I+ D+VLIDV+GV YI++ RTL+ L G+ L+ E +R+D ++L Sbjct: 1 MIGKISGRIDYRGADHVLIDVRGVGYIVHVSDRTLAGLPGPGEAVALYTELLVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + L+++W LL +VQGVGA+ AM +L + A +I L +++ I PGI KI Sbjct: 61 FGFPTLLEKEWHRLLMTVQGVGAKAAMAILGTLGAEGAARAISLGDARSIQAAPGIGPKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP----------------SFAINAI 164 A R++ ELK KA + ++ + A P ++ +A+ Sbjct: 121 AQRVVLELKSKAPGVMAMGAALSARAEGNDADAVIEPLPVARKPTPAPTQSRAAYTADAL 180 Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 SAL NLGYG A+ AV + AD + +IR+AL+ ++ Sbjct: 181 SALTNLGYGPVDASQAVAQAAGEAPE-ADTATLIRIALKLLA 221 >gi|328953690|ref|YP_004371024.1| Holliday junction ATP-dependent DNA helicase ruvA [Desulfobacca acetoxidans DSM 11109] gi|328454014|gb|AEB09843.1| Holliday junction ATP-dependent DNA helicase ruvA [Desulfobacca acetoxidans DSM 11109] Length = 198 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 107/206 (51%), Gaps = 10/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + DY++I V GV Y + P+ T L + L + T ++ D ++L Sbjct: 1 MIAYLEGELFQKRPDYLIIKVGGVGYQTFIPLSTFYQLPEPPASVALHIHTQVQTDSLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 + F + ++Q F+ L S+ VG R+A+ +LS I+ +L +++I + +A IPG+ K Sbjct: 61 YAFATLDEKQTFIKLLSIPRVGPRLALNILSGISPQDLAQTLIQGDIPRLAAIPGLGRKS 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RIM ELKGK ++ V S + +A+SAL+NLGY + A Sbjct: 121 AERIMVELKGKLRPDATAVSALSSG---------PQGALWEDALSALINLGYSRTLAEEV 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + V EK + +I+RL+L ++ Sbjct: 172 LRHVQLHEKPL-TLEEILRLSLSRLA 196 >gi|260753286|ref|YP_003226179.1| Holliday junction DNA helicase RuvA [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552649|gb|ACV75595.1| Holliday junction DNA helicase RuvA [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 213 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 69/209 (33%), Positives = 110/209 (52%), Gaps = 5/209 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + D +IDV GV Y++ R L +I T+ +ET +R+D I L Sbjct: 1 MIARLVGFLVEKNSDSAVIDVNGVGYLVQLSGRALDYFSEIEGEITVHIETQIREDSITL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S L+R WF LL SVQGVG + A+ +L+ +T + +I + +I + GI KI Sbjct: 61 FGFASYLERDWFRLLTSVQGVGGKAALAILTALTCDAISVAISSGDKTMICRSNGIGPKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQ-----DMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 A RI+ ELK K +++ + +++ A +F +A+SAL+NLG+ Sbjct: 121 AQRIINELKEKPAAIALFSSAKGDHLAVEDISQPAASAHHAGNFVADAVSALLNLGFKPA 180 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRA 204 +A V ++ + A ++RLALR Sbjct: 181 EAQRVVQLASEELGDQATLDSLVRLALRL 209 >gi|83592424|ref|YP_426176.1| DNA recombination protein RuvA [Rhodospirillum rubrum ATCC 11170] gi|123739581|sp|Q2RVF6|RUVA_RHORT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|83575338|gb|ABC21889.1| DNA recombination protein RuvA [Rhodospirillum rubrum ATCC 11170] Length = 212 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 78/209 (37%), Positives = 118/209 (56%), Gaps = 6/209 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+KG ++ + ED+ +IDV GV Y+++CP R L+ L G L VET +R+D I L Sbjct: 1 MIAKLKGLVDSVAEDHAVIDVGGVGYLVFCPARVLTRLPSPGQAVALVVETQVREDHISL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL +R WF LL +VQGVG++VA+ VLS ++A ++ ++I + + + PG+ K+ Sbjct: 61 FGFLETAERDWFRLLSTVQGVGSKVALSVLSVLSAGQISQAIAAGDKAALGRAPGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA----HICSMPSFAINAISALVNLGYGQDQ 176 A+RI +ELK KA++L + + A +A+SALVNLGYG+ + Sbjct: 121 AARIASELKDKAVALGGMPAPPPRGAGTDAAGEGPPGGPTGDVLGDAVSALVNLGYGRSE 180 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A A +I LALR + Sbjct: 181 AVGAASRAA--GLGATTVQGVIGLALRDL 207 >gi|291557651|emb|CBL34768.1| Holliday junction DNA helicase subunit RuvA [Eubacterium siraeum V10Sc8a] Length = 199 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 94/206 (45%), Gaps = 9/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G ++ + + +ID GV Y TLS L KIG+ L +R+D + L Sbjct: 1 MIYSVNGTVDLIEPNLAVIDCGGVGYACRTTANTLSQL-KIGEKAKLLTYLSVREDAVEL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + F +L SV GVG + A+ +LS +T + + K + PGI K Sbjct: 60 FGFYDAAELNCFRMLISVSGVGPKAALSILSGMTPQAFALCVASGDGKTLTNAPGIGRKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K S V + + + A+SAL+ LGY +A +A Sbjct: 120 AERIVLELKDKVSKQDVAAGVKGSAV----PIVAAPSNTYAEAVSALMVLGYSNGEAASA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + ++IR L+ ++ Sbjct: 176 LSGLDPSAPSD----ELIRAGLKKLA 197 >gi|83647602|ref|YP_436037.1| Holliday junction DNA helicase RuvA [Hahella chejuensis KCTC 2396] gi|123739873|sp|Q2SCL2|RUVA_HAHCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|83635645|gb|ABC31612.1| Holliday junction DNA helicase RuvA [Hahella chejuensis KCTC 2396] Length = 204 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 108/205 (52%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + + +VL+DV GV Y + P+ L L K+G+ C+LF +R+D L Sbjct: 1 MIGRLVGKLAENHPPFVLLDVNGVGYEVEVPLSALGYLPKLGESCSLFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ DR+ F LL V GVG ++A+ +LS ++ E VE + N + ++PG+ K Sbjct: 61 YGFIRREDRELFRLLLKVNGVGPKMAVAILSHMSPNEFVECVRGDNLTRLTKMPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ + + + + S A +AL+ LGY +A+ A Sbjct: 121 AERLLIEMRDRIKDWG--AGDRETATPELLSQAVGGHSHLEEAEAALLALGYKPQEASRA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +V K+ ++IRLAL+ + Sbjct: 179 INAV---NKDGMGRDELIRLALKGM 200 >gi|254496522|ref|ZP_05109393.1| holliday junction DNA helicase [Legionella drancourtii LLAP12] gi|254354261|gb|EET12925.1| holliday junction DNA helicase [Legionella drancourtii LLAP12] Length = 199 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 57/207 (27%), Positives = 97/207 (46%), Gaps = 11/207 (5%) Query: 1 MIGKIKGNIEGL-YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG + G+I ++++V GV Y + + T L + L + T +R+D + Sbjct: 1 MIGWLDGHIVDKHQPGKLVLNVNGVGYDVETSLNTFFQLDTLSGSIGLHIHTVVREDALL 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL +R F L V GVG ++A+ +LS IT E ++ I + + + ++PGI K Sbjct: 61 LYGFLDKQERALFRALIKVNGVGPKMAIAILSSITPNEFIQCIKQEKAAFLTKLPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E++ S + ++ A+SAL LGY +A Sbjct: 121 TAERLVIEMRDSIKQFSE-------PASDLSLKPINLIRGQDEAVSALEALGYKPQEALK 173 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV + + Q+IR AL+ +S Sbjct: 174 AVNKL---DDGHKSCEQLIREALQILS 197 >gi|297621995|ref|YP_003710132.1| Holliday junction ATP-dependent DNA helicase ruvA [Waddlia chondrophila WSU 86-1044] gi|297377296|gb|ADI39126.1| Holliday junction ATP-dependent DNA helicase ruvA [Waddlia chondrophila WSU 86-1044] Length = 202 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 54/203 (26%), Positives = 95/203 (46%), Gaps = 3/203 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + +++ G+ Y ++ P T L +IG L +R+ L Sbjct: 1 MIYFIRGILIQSTPGIAILETGGIGYKVHIPASTYPKLPQIGQEALLHTSMVVREVSQTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L +V G+G ++A+ ++ ++ E+ +I Q +I+++PGI K Sbjct: 61 YGFFYSEERDLFEELTTVSGIGPKIALALIGHLSVEEMHAAIGNQEVAMISKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K + + Q S +A+SAL+NLGY Q A A Sbjct: 121 AQRLVIELRDKVQK---GGKYSLPSDFAIQVGTDSRGQKIADAMSALLNLGYNQSTAQKA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 + L D +++I AL+ Sbjct: 178 LKKSLSNFPETIDLTELITDALK 200 >gi|15838502|ref|NP_299190.1| Holliday junction DNA helicase RuvA [Xylella fastidiosa 9a5c] gi|20455272|sp|Q9PC77|RUVA_XYLFA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|9106999|gb|AAF84710.1|AE004010_7 holliday junction binding protein, DNA helicase [Xylella fastidiosa 9a5c] Length = 194 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 91/204 (44%), Gaps = 13/204 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV GV Y + P+ T L +G LF + D L Sbjct: 1 MIGRLRGVLTSKTPPWLVVDVCGVGYELEVPMSTFYELPNVGYEVNLFTHYTQKDDSAAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS+ +R+ F LQ V G+G ++A+ VLS ++ I + + IPGI K Sbjct: 61 YGFLSESERRLFRHLQRVSGIGTKIALAVLSSVSVDTFAGLIQAGDVNALTVIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ +A + N A AL LGY +A Sbjct: 121 AERMLVELRDRAADFN----------NGISTSGKLNLDTVSEAALALQQLGYKPAEAARM 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + ++A I+ AL+A Sbjct: 171 ARDAGTESDDVASV---IKKALQA 191 >gi|209517513|ref|ZP_03266353.1| Holliday junction DNA helicase RuvA [Burkholderia sp. H160] gi|209502046|gb|EEA02062.1| Holliday junction DNA helicase RuvA [Burkholderia sp. H160] Length = 193 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 103/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y + P+ T L G+ L + +R+D L Sbjct: 1 MIGRIAGVLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPSSGERIVLLTQMIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L + G+GAR+A+ VLS ++ EL +++ +Q++ + ++PGI K Sbjct: 61 YGFGTAQERATFRELLKISGIGARMALAVLSGMSVAELAQTVTMQDAARLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ++ + A S A + ++AL+ LGY + +A A Sbjct: 121 AERL-----------LLELKGKLGADLGAMAGAASASDHASDILNALLALGYSEKEALAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +V S+ I+LAL+A+S Sbjct: 170 IKNV----PAGTGVSEGIKLALKALS 191 >gi|326318908|ref|YP_004236580.1| Holliday junction DNA helicase RuvA [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375744|gb|ADX48013.1| Holliday junction DNA helicase RuvA [Acidovorax avenae subsp. avenae ATCC 19860] Length = 190 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 97/206 (47%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G + VL+D GV Y + P+ T L +G+ L + +R+D L Sbjct: 1 MIGKLTGTLLEKNPPEVLVDCHGVGYEVQVPMSTFYNLPAVGERVQLLTQFIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +RQ F L + GVG R A+ +LS + +L +++ LQ + + ++PGI K Sbjct: 61 YGFGSAPERQAFRELIKISGVGPRTALSILSGMGVDDLAQAVSLQEAGRLVKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R +++ A + + + AL+ LGY + +A Sbjct: 121 AER-------------LLLELKGKLGVDIGARPEAANDAQADILQALLALGYNDREGASA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + ++ K S+ I+LAL+A++ Sbjct: 168 LKALPKDVG----VSEGIKLALKALA 189 >gi|56551051|ref|YP_161890.1| Holliday junction DNA helicase RuvA [Zymomonas mobilis subsp. mobilis ZM4] gi|81355594|sp|Q5NR75|RUVA_ZYMMO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|56542625|gb|AAV88779.1| Holliday junction DNA helicase RuvA [Zymomonas mobilis subsp. mobilis ZM4] Length = 213 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 69/209 (33%), Positives = 110/209 (52%), Gaps = 5/209 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + D +IDV GV Y++ R L +I T+ +ET +R+D I L Sbjct: 1 MIARLVGFLVEKNSDSAVIDVNGVGYLVQLSGRALDYFSEIEGEITVHIETQIREDSITL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S L+R WF LL SVQGVG + A+ +L+ +T + +I + +I + GI KI Sbjct: 61 FGFASYLERDWFRLLTSVQGVGGKAALAILTALTCDAISVAISSGDKTMICRANGIGPKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQ-----DMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 A RI+ ELK K +++ + +++ A +F +A+SAL+NLG+ Sbjct: 121 AQRIINELKEKPAAIALFSSAKGDHLAVEDISQPAASAHHAGNFMADAVSALLNLGFKPA 180 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRA 204 +A V ++ + A ++RLALR Sbjct: 181 EAQRVVQLASEELGDQATLDSLVRLALRL 209 >gi|329113836|ref|ZP_08242607.1| Holliday junction ATP-dependent DNA helicase RuvA [Acetobacter pomorum DM001] gi|326696846|gb|EGE48516.1| Holliday junction ATP-dependent DNA helicase RuvA [Acetobacter pomorum DM001] Length = 203 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 111/206 (53%), Gaps = 4/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + +IDV GV Y++ RTL+ L + L +ET +R+D I L Sbjct: 1 MIAFLCGLVIQVDLGSCVIDVNGVGYLVAASTRTLAALPNPPEKARLLIETVVREDAILL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ +R+WF LL SVQGVGA+VA+G+LS ++ ELV +++ + + + PG+ ++ Sbjct: 61 YGFMESAEREWFRLLTSVQGVGAKVALGILSTLSPGELVAALMTSDKASLTRAPGVGGRL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TEL+ KA + + A S +A+ AL LG+ + +A Sbjct: 121 AERILTELRDKAGKMPGGGSGGI----TIPAMATPAGSIEADALMALAGLGFRRAEAAPV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V V+ +A +IR +L+ ++ Sbjct: 177 VRKVMDTHGAVATLDMVIRDSLKDLA 202 >gi|167750454|ref|ZP_02422581.1| hypothetical protein EUBSIR_01430 [Eubacterium siraeum DSM 15702] gi|167656605|gb|EDS00735.1| hypothetical protein EUBSIR_01430 [Eubacterium siraeum DSM 15702] Length = 199 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 95/206 (46%), Gaps = 9/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G ++ + + +ID GV Y TLS L KIG+ L +R+D + L Sbjct: 1 MIYSVNGTVDLIEPNLAVIDCGGVGYACRTTANTLSQL-KIGEKAKLLTYLSVREDAVEL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + F +L SV GVG + A+ +LS +T + + K + PGI K Sbjct: 60 FGFYDAAELNCFRMLISVSGVGPKAALSILSGMTPQAFALCVASGDGKTLTNAPGIGRKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K S V + + + A+SAL+ LGY +AT+A Sbjct: 120 AERIVLELKDKVSKQDVAAGVKGSAV----PIVAAPSNTYAEAVSALMVLGYSNGEATSA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + ++IR L+ ++ Sbjct: 176 LSGLDPSAPSD----ELIRAGLKKLA 197 >gi|302386617|ref|YP_003822439.1| Holliday junction DNA helicase RuvA [Clostridium saccharolyticum WM1] gi|302197245|gb|ADL04816.1| Holliday junction DNA helicase RuvA [Clostridium saccharolyticum WM1] Length = 202 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 103/206 (50%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + ++ED V+I+ V + I+ P+ L L IG L+ +R+D + L Sbjct: 1 MISFIKGPLAEIFEDTVVIESGNVGFEIHAPLSVLEKLPGIGVEIKLYTYFQVREDAMCL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ D Q F L SV G+G + A+G+LS + EL +II ++K I++ PG+ K Sbjct: 61 FGFLNRQDLQMFQQLISVNGIGPKGALGILSALRPEELRRAIISGDAKAISKAPGVGAKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + + S + + A+ AL LGY +A A Sbjct: 121 AQRIILDLKDKI----DLAEILPSGFTESADKVILSGGVTEEALEALTALGYSAAEAGRA 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V V + +++ +L+ ++ Sbjct: 177 VRQV--EVTESMTVEDVLKASLKHLA 200 >gi|317402225|gb|EFV82814.1| Holliday junction DNA helicase [Achromobacter xylosoxidans C54] Length = 190 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 103/205 (50%), Gaps = 17/205 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + V +DV G+ Y I P+ TL L + G TL+ +R+D L Sbjct: 1 MIGRITGTLIEKLPPTVCVDVNGLGYDIDVPMSTLYSLPETGARVTLYTHLTVREDAHIL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+GAR A+ VLS ++ +L ++I LQ S + ++PGI K Sbjct: 61 YGFATAGERSAFRELIKVSGIGARTALSVLSGLSVADLAQAITLQESGRLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++GK + A ++ + ++AL+ LGY + ++ +A Sbjct: 121 AERLLLEMRGKLGA-------------DIGATAHAVHDNQSDILNALLALGYSEKESLSA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 LK S I+ AL+A+ Sbjct: 168 ----LKTLPEGVGVSDGIKQALKAL 188 >gi|120612876|ref|YP_972554.1| Holliday junction DNA helicase RuvA [Acidovorax citrulli AAC00-1] gi|166229622|sp|A1TUZ2|RUVA_ACIAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|120591340|gb|ABM34780.1| Holliday junction DNA helicase RuvA [Acidovorax citrulli AAC00-1] Length = 190 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 97/206 (47%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G + VL+D GV Y + P+ T L +G+ L + +R+D L Sbjct: 1 MIGKLTGTLLEKNPPEVLVDCHGVGYEVQVPMSTFYNLPAVGERVQLLTQFIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +RQ F L + GVG R A+ +LS + +L +++ LQ + + ++PGI K Sbjct: 61 YGFGSAPERQAFRELIKISGVGPRTALSILSGMGVDDLAQAVSLQEAGRLVKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R +++ A + + + AL+ LGY + T A Sbjct: 121 AER-------------LLLELKGKLGVDIGARPEAANDAQADILQALLALGYNDKEGTAA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + ++ K S+ I+LAL+A++ Sbjct: 168 LKALPKDVG----VSEGIKLALKALA 189 >gi|258405866|ref|YP_003198608.1| Holliday junction DNA helicase RuvA [Desulfohalobium retbaense DSM 5692] gi|257798093|gb|ACV69030.1| Holliday junction DNA helicase RuvA [Desulfohalobium retbaense DSM 5692] Length = 204 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 1 MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG +KG++ + +D+ L+ GV Y + TL L + G LFV T +R+D + Sbjct: 1 MIGYLKGDVLRIRKDHCLLATAGGVGYDVQATAGTLGRL-EQGSEAELFVHTVVREDALE 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF S +R F L V +G + ++ +LS T EL +++ + ++ GI K Sbjct: 60 LYGFASLAERDVFAELLGVSKLGPKTSLAILSTFTPEELARIAQTEDTAALTRVSGIGPK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RIM ELK K + + QA S S +A+S L LGY +++ Sbjct: 120 SAKRIMWELKDKLTAWEGE-----AVPGTPQATPASGGSVFGDALSGLCGLGYSEEEVRP 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 + +L++E ++ D +IIR L+ ++ Sbjct: 175 VLSEILEQEPDL-DVGEIIRACLKRLA 200 >gi|239628227|ref|ZP_04671258.1| holliday junction DNA helicase RuvA [Clostridiales bacterium 1_7_47_FAA] gi|239518373|gb|EEQ58239.1| holliday junction DNA helicase RuvA [Clostridiales bacterium 1_7_47FAA] Length = 209 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 62/209 (29%), Positives = 106/209 (50%), Gaps = 5/209 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + G+ ED ++++ V I P L ++G+ T++ +R+D + L Sbjct: 1 MISYVKGPLMGIDEDSIIVEAGNVGLAIRVPASLQPELPRLGEEVTIYTYFQVREDAMTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL DR F L V G+G + A+G+LS + +L +I+ ++ K +A+ PGI K Sbjct: 61 YGFLHSQDRDMFRQLIGVNGIGPKGALGILSVLRPDDLRLAIVSEDVKALAKAPGIGNKT 120 Query: 121 ASRIMTELKGKAIS---LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ +LK K L S+ S V A + + A A+ ALV LGY +A Sbjct: 121 AQRLILDLKDKISMDDVLGSMALSGDSGVGPAAASMAGLAEAAKEAVQALVALGYTNTEA 180 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 + AV V + +++ +L+ +S Sbjct: 181 SRAVKQV--EVAEGMTSEDVLKASLKHLS 207 >gi|319778457|ref|YP_004129370.1| Holliday junction DNA helicase RuvA [Taylorella equigenitalis MCE9] gi|317108481|gb|ADU91227.1| Holliday junction DNA helicase RuvA [Taylorella equigenitalis MCE9] Length = 191 Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 109/205 (53%), Gaps = 16/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++KG + + V ID+ G+ Y + + + L ++G TLF +R+D L Sbjct: 1 MISRLKGKLIYKFPPTVCIDIGGIAYDVDVSLTSFYELPEVGQEVTLFTHLAVREDAHTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+S+ +R F L V G+G + A+G+LS ++ L +I Q+S + ++PGI K Sbjct: 61 YGFISEDERATFRTLIKVNGIGFKSALGILSGMSPDALYNAIEEQDSSQLERVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ ELKGK +S++ + S + + AL+NLGY + QA A Sbjct: 121 AARIILELKGKLPEISTL------------NNTTSNLKNHNDVLIALLNLGYSEKQAKLA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ D S+ +R+ALR++ Sbjct: 169 ISTL----PKDIDASEGVRIALRSM 189 >gi|85374915|ref|YP_458977.1| Holliday junction DNA helicase RuvA [Erythrobacter litoralis HTCC2594] gi|123293674|sp|Q2N811|RUVA_ERYLH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|84787998|gb|ABC64180.1| probable holliday junction DNA helicase protein [Erythrobacter litoralis HTCC2594] Length = 200 Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 68/206 (33%), Positives = 119/206 (57%), Gaps = 7/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+KG ++ D+ +IDV GV Y+++C ++L+ LG++G+ CT++ + + ++ +RL Sbjct: 1 MIAKLKGLLDETGTDWAVIDVSGVGYLVHCSSKSLAALGEVGEACTVYTDLQVSENDMRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF +R WF LL VQGVG++VA+ +LS ++ E+ + ++ ++A+ G+ K+ Sbjct: 61 LGFAEASERDWFRLLTQVQGVGSKVALAILSALSTEEVQTACANGDAAMVARAQGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK KA +L S N + +A+SAL NLG+ A A Sbjct: 121 AGRIVNELKDKAGALPSAPGGAAMAAN-------PAGGASADAVSALENLGFKPAIAARA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + + A +S++IR+AL+ + Sbjct: 174 VATAQGELGEGASESELIRVALKRAA 199 >gi|241761371|ref|ZP_04759459.1| Holliday junction DNA helicase RuvA [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374278|gb|EER63775.1| Holliday junction DNA helicase RuvA [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 213 Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 69/209 (33%), Positives = 110/209 (52%), Gaps = 5/209 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + D +IDV GV Y++ R L +I T+ +ET +R+D I L Sbjct: 1 MIARLVGFLVEKNSDSAIIDVNGVGYLVQLSGRALDYFSEIEGEITVHIETQIREDSITL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S L+R WF LL SVQGVG + A+ +L+ +T + +I + +I + GI KI Sbjct: 61 FGFASYLERDWFRLLTSVQGVGGKAALAILTALTCDAISVAISSGDKTMICRANGIGPKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQ-----DMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 A RI+ ELK K +++ + +++ A +F +A+SAL+NLG+ Sbjct: 121 AQRIINELKEKPAAIALFSSAKGDHLAVEDISQPAASAHHAGNFVADAVSALLNLGFKPA 180 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRA 204 +A V ++ + A ++RLALR Sbjct: 181 EAQRVVQLASEELGDQATLDSLVRLALRL 209 >gi|121603423|ref|YP_980752.1| Holliday junction DNA helicase RuvA [Polaromonas naphthalenivorans CJ2] gi|120592392|gb|ABM35831.1| Holliday junction DNA helicase RuvA [Polaromonas naphthalenivorans CJ2] Length = 192 Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 17/205 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L+D GV Y + P+ T L +G+ +LF +R+D L Sbjct: 3 MIGRLTGQLAEKNPPEILVDCHGVGYEVLVPMSTFYNLPGLGEKISLFTHFIVREDAQLL 62 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L + GVG R+A+ VLS ++ EL +++ LQ + I ++PGI K Sbjct: 63 YGFGSTAERGAFRQLIKITGVGPRMALSVLSGMSVAELAQAVTLQEAGRIVKVPGIGKKT 122 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R +++ AH+ ++ + ALV LGY A A Sbjct: 123 AER-------------LLLELKGKLGADIGAHVSVSSEAQLDILQALVALGYSDKDAALA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ S+ I+LALRA+ Sbjct: 170 LKAL----PPDVGVSEGIKLALRAL 190 >gi|319761299|ref|YP_004125236.1| holliday junction DNA helicase ruva [Alicycliphilus denitrificans BC] gi|330823173|ref|YP_004386476.1| Holliday junction DNA helicase RuvA [Alicycliphilus denitrificans K601] gi|317115860|gb|ADU98348.1| Holliday junction DNA helicase RuvA [Alicycliphilus denitrificans BC] gi|329308545|gb|AEB82960.1| Holliday junction DNA helicase RuvA [Alicycliphilus denitrificans K601] Length = 190 Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 95/206 (46%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G + VL+D GV Y + P+ T L +G +L + +R+D L Sbjct: 1 MIGKLTGALLEKNPPEVLLDCHGVGYEVLVPMSTFYNLPAVGQPVSLLTQFIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +RQ F L V GVG R A+ +LS + +L +++ LQ + + ++PGI K Sbjct: 61 YGFATQQERQAFRELIKVSGVGPRTALSILSGLGVADLAQAVSLQEAGRLVKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R +++ + + + + AL+ LGY +A A Sbjct: 121 AER-------------LLLELKGKLGADMGGRPHAASADQADILQALLALGYNDKEAAAA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 LK S+ I+LAL++++ Sbjct: 168 ----LKGLPADVGVSEGIKLALKSLA 189 >gi|262368599|ref|ZP_06061928.1| Holliday junction helicase subunit A [Acinetobacter johnsonii SH046] gi|262316277|gb|EEY97315.1| Holliday junction helicase subunit A [Acinetobacter johnsonii SH046] Length = 200 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 107/206 (51%), Gaps = 7/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + L VL++V GV Y I P+ T L K G TL+ +R+D L Sbjct: 1 MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLTTFCQLQK-GQKITLWTHLAVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL ++ F L V GVG ++A+G+LS ++ L+ ++ ++ + ++PG+ K Sbjct: 60 YGFLHQQEKIIFRTLLKVNGVGPKMALGILSTLSVDMLIHTVEHEDINTLVKVPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+M EL+ + ++SS S V + Q S A +AL +LGY +A Sbjct: 120 AERLMIELRDRFKAMSSGAAPSNSTVEQIQFT---GNSAVAEAEAALQSLGYKPLEAQKL 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + + + + S IIR AL++++ Sbjct: 177 VSAA---KGDFTEASDIIRAALKSMN 199 >gi|254419140|ref|ZP_05032864.1| Holliday junction DNA helicase RuvA [Brevundimonas sp. BAL3] gi|196185317|gb|EDX80293.1| Holliday junction DNA helicase RuvA [Brevundimonas sp. BAL3] Length = 205 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 68/206 (33%), Positives = 107/206 (51%), Gaps = 4/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ-IR 59 MIG+++G + + E LID GV Y++ C RTL L GD T+ V + +D R Sbjct: 1 MIGRLRGVLAEVGEADCLIDCAGVGYVVSCGARTLGRLPAPGDEATVHVHSQWSEDAGPR 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL+ +R+ F L ++QGVG + A+ VL + EL ++ ++ +A+ G+ K Sbjct: 61 LYGFLTRDERRAFTTLLAIQGVGPKAALAVLDVLPPGELAGAVAREDKAAVARANGVGPK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 +A RI+TELKGK + V + PS A+SAL+ LG + A Sbjct: 121 LALRIVTELKGKPL---GDVSFAPTAPGVHVEIAPPPPSLTGEAVSALLGLGVAEVNARR 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 AV L + + A+ +IR AL+ + Sbjct: 178 AVDQALIRLGDEAELPAVIRAALQEL 203 >gi|83859806|ref|ZP_00953326.1| Holliday junction DNA helicase motor protein [Oceanicaulis alexandrii HTCC2633] gi|83852165|gb|EAP90019.1| Holliday junction DNA helicase motor protein [Oceanicaulis alexandrii HTCC2633] Length = 216 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 80/216 (37%), Positives = 115/216 (53%), Gaps = 11/216 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ + E+ +IDV GV Y++ RTL L + G L +ETH+R+DQ +L Sbjct: 1 MIGKLKGVVDCVGEEEAVIDVNGVGYLVSAGSRTLGRL-EPGKPVALHIETHVREDQFKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLSD +R WF+ LQSVQGVGA+ A+ +L I E+ S IL + + G+ K+ Sbjct: 60 FGFLSDSERAWFVRLQSVQGVGAKHALAMLDAIEVGEIESSAILGDPLPFERAKGVGKKL 119 Query: 121 ASRIMTELKGKAISLS----------SVVQQDMSCVNKEQAHICSMPSFAINAISALVNL 170 A RI TELK KA L + A +A+SALVNL Sbjct: 120 AQRIATELKDKAPPLGRSLGAGVAELAAALAPAGAETPTAAPAPKDNVMRESAVSALVNL 179 Query: 171 GYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 GY + A A L++ A + +I+ AL+ ++ Sbjct: 180 GYSESDARKAAAEALRQLGEDATEGLVIKSALKELA 215 >gi|291530842|emb|CBK96427.1| Holliday junction DNA helicase subunit RuvA [Eubacterium siraeum 70/3] Length = 199 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 94/206 (45%), Gaps = 9/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G ++ + + +ID GV Y TLS L KIG+ L +R+D + L Sbjct: 1 MIYSVNGTVDLIEPNLAVIDCGGVGYACRTTANTLSQL-KIGEKAKLLTYLSVREDAVEL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + F +L SV GVG + A+ +LS +T + + K + PGI K Sbjct: 60 FGFYDAAELNCFKMLISVSGVGPKAALSILSGMTPQAFALCVASGDGKTLTNAPGIGRKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K S V + + + A+SAL+ LGY +A +A Sbjct: 120 AERIVLELKDKVSKQDVAAGVKGSAV----PIVAAPSNTYAEAVSALMVLGYSNGEAASA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + ++IR L+ ++ Sbjct: 176 LSGLDPSAPSD----ELIRAGLKKLA 197 >gi|240851225|ref|YP_002972628.1| Holliday junction DNA helicase RuvA [Bartonella grahamii as4aup] gi|240268348|gb|ACS51936.1| Holliday junction DNA helicase RuvA [Bartonella grahamii as4aup] Length = 204 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 73/207 (35%), Positives = 126/207 (60%), Gaps = 7/207 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG +E +++D++L+DV GV Y+++ R L +G+ +LFVETH+R+D IRL Sbjct: 1 MIGKLKGTLEHIFDDHILLDVHGVGYVVFVSNRLRPSLPSVGEALSLFVETHVREDAIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++WF LLQ+V GVGA+VA+ +L ++ EL ++I L + +I++ PG+ K+ Sbjct: 61 FGFATRAEQEWFCLLQNVPGVGAKVALAILGTLSPDELAQAIALNDVAMISRAPGVGKKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 + RI+ ELK K + V+ + A +A+SAL+ LG+ ++ A+ A Sbjct: 121 SERIVGELKSKTLPFEQAVKTVSVPQREM------TNQPAHDALSALMKLGFEREHASRA 174 Query: 181 VVSVLKK-EKNIADDSQIIRLALRAIS 206 + + E + +IR +L+ +S Sbjct: 175 LALAMNALEGETVSSALLIRHSLKLLS 201 >gi|332701178|ref|ZP_08421266.1| Holliday junction ATP-dependent DNA helicase ruvA [Desulfovibrio africanus str. Walvis Bay] gi|332551327|gb|EGJ48371.1| Holliday junction ATP-dependent DNA helicase ruvA [Desulfovibrio africanus str. Walvis Bay] Length = 202 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 51/207 (24%), Positives = 102/207 (49%), Gaps = 10/207 (4%) Query: 1 MIGKIKGNIEGLYEDY-VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG I+G + E +++ GV Y ++ P+ L+ L G + E +R+D Sbjct: 1 MIGYIRGTLLEQTEKSCLVLTAGGVGYELHLPLPALARLPAEGQEVSFHTEQVVREDSQD 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + +R+ F +L S+ +G + + +LS+ +L + ++ ++ + ++ GI K Sbjct: 61 LYGFETSEERRLFHVLLSIPNLGPKKGLAILSQFHPDDLRQIVLHEDIAALTRVSGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 +I+ ELK K + S +A++ L NLGY +++A Sbjct: 121 TGQQILWELKYKL--------ASADAPAVGRKPAAPGRSVLQDALAGLTNLGYSEEEARP 172 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 + + + E ++ D +Q++R AL+AI+ Sbjct: 173 VLHKLFEAEPDL-DVAQLLREALKAIA 198 >gi|49474677|ref|YP_032719.1| Holliday junction DNA helicase motor protein [Bartonella quintana str. Toulouse] gi|81646802|sp|Q6FYP5|RUVA_BARQU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|49240181|emb|CAF26647.1| Holliday junction DNA helicase ruvA [Bartonella quintana str. Toulouse] Length = 205 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 76/207 (36%), Positives = 131/207 (63%), Gaps = 6/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG +E +++D++++DVQGV Y+++ R L +G+ +LF+ETH+R++ IRL Sbjct: 1 MIGKLKGILEHVFDDHIIVDVQGVGYVVFISNRLRPSLPALGESLSLFIETHVREEAIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF++ +++WF LLQ+V GVGA+VA+ +L ++ EL ++I L + +I++ PG+ K+ Sbjct: 61 FGFVAKAEQEWFCLLQNVPGVGAKVALAILGTLSPDELAQAIALNDIAMISRAPGVGKKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 + RI++ELK KA+ D + Q H+ +A+SALV LG+ +DQA A Sbjct: 121 SERIVSELKSKALPF-----NDNALHFTPQPHLEVTHQPTNDALSALVKLGFERDQAARA 175 Query: 181 VVSVLKK-EKNIADDSQIIRLALRAIS 206 + + E + +IR +L+ +S Sbjct: 176 LALAMNALEGETVSSALLIRHSLKLLS 202 >gi|194366898|ref|YP_002029508.1| Holliday junction DNA helicase RuvA [Stenotrophomonas maltophilia R551-3] gi|229560131|sp|B4ST34|RUVA_STRM5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|194349702|gb|ACF52825.1| Holliday junction DNA helicase RuvA [Stenotrophomonas maltophilia R551-3] Length = 197 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 97/204 (47%), Gaps = 10/204 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV GV Y + P+ T L ++G TL+ ++D + L Sbjct: 1 MIGRLRGIVAYKAPPWLVVDVNGVGYELEAPMSTFYDLPELGREVTLYTHYSQKEDSVSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + +R+ F +Q V G+GA++A+ VLS +T E + + + +IPGI K Sbjct: 61 YGFLREGERRLFRDVQKVSGIGAKIALAVLSGVTVEEFARMVQAGDITALTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ +A + + +A AL LGY +A Sbjct: 121 AERMVLELRDRAAQFGAGGALPTGSG-------PAPADPLSDATVALQQLGYKPAEAARM 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + +A IR AL++ Sbjct: 174 AREAFNEGDEVAIV---IRKALQS 194 >gi|189462206|ref|ZP_03010991.1| hypothetical protein BACCOP_02888 [Bacteroides coprocola DSM 17136] gi|189431109|gb|EDV00094.1| hypothetical protein BACCOP_02888 [Bacteroides coprocola DSM 17136] Length = 198 Score = 158 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + + +I+ G+ Y I + T S + + L++ +R+D L Sbjct: 1 MIEYIKGELTEITPAMAVIECNGLGYGINVSLNTYSAI-QGKKEVKLYIYESIREDAYIL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F+LL SV G+G A +LS +T +EL I N K++ + GI +K Sbjct: 60 YGFATKQERELFLLLISVSGIGGNTARMILSALTPSELCNVISSGNDKLLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + + ++ I + AI+AL LG+ Q + Sbjct: 120 AQRIIVDLKDKISTTDIGTSTTSAPIS-----ITANNEIYEEAIAALTMLGFAQAPSQKV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++LK+E + A ++I+LAL+ + Sbjct: 175 VAAILKEEPDAA-VEKVIKLALKRL 198 >gi|255533713|ref|YP_003094085.1| Holliday junction DNA helicase RuvA [Pedobacter heparinus DSM 2366] gi|255346697|gb|ACU06023.1| Holliday junction DNA helicase RuvA [Pedobacter heparinus DSM 2366] Length = 194 Score = 158 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + Y++++ GV Y + + T S L + C ++ H+++D L Sbjct: 1 MFEYIDGKLAFKCPTYIVVEAGGVGYHLNISLNTYSSLANT-ERCKVYTWLHVKEDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F+ L SV G+G +LS IT E+ +I+ + +I +I GI K Sbjct: 60 YGFADEGERRLFLHLISVSGIGPNTGRMMLSSITPVEIQTAIVNADLALIQRIKGIGAKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K S + A+SAL+ LG+ + + A Sbjct: 120 AQRLVLELQDKLKKEGSGS----------LIAAPLNNTVREEALSALMMLGFAKPASEKA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + +K Q+I++AL+ + Sbjct: 170 IDNAVKNGGQDLSVEQMIKIALKNL 194 >gi|266625272|ref|ZP_06118207.1| holliday junction DNA helicase RuvA [Clostridium hathewayi DSM 13479] gi|288862827|gb|EFC95125.1| holliday junction DNA helicase RuvA [Clostridium hathewayi DSM 13479] Length = 202 Score = 158 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 106/206 (51%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + ++ED V+I+ + I+ P+ L L IG L+ +R+D + L Sbjct: 1 MISYVKGPLVDIFEDTVVIEAGYIGLEIHVPLSVLDRLPGIGMETVLYTYFQVREDGMCL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ D Q F L SV G+G + A+GVLS +T EL +II ++K I++ PGI +K Sbjct: 61 YGFLNRQDLQMFRQLISVSGIGPKGALGVLSAMTPDELRLAIITGDAKAISRAPGIGVKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + + E+ S A A+ ALV LGY +A A Sbjct: 121 AQRVILDLKDKI----DMADVLPAQFAAEEEPGISAGGVAKEAVEALVALGYSTAEANRA 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V V + +++ +L+ ++ Sbjct: 177 VGKV--EVTGDMTSEDVLKASLKHLA 200 >gi|187735908|ref|YP_001878020.1| Holliday junction DNA helicase RuvA [Akkermansia muciniphila ATCC BAA-835] gi|187425960|gb|ACD05239.1| Holliday junction DNA helicase RuvA [Akkermansia muciniphila ATCC BAA-835] Length = 220 Score = 158 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 59/208 (28%), Positives = 103/208 (49%), Gaps = 13/208 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI ++G + Y +++DV GV Y + P+ T L G TL H+R++ Sbjct: 24 MIAFLRGTVAESYPQRLILDVHGVGYEVIVPLSTFDRLNPLPGRELTLKTYLHVRENMQV 83 Query: 60 LFGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GF +D +R F+LL V G+G A+ +L ++ + ++++ + IA+ G+ Sbjct: 84 LYGFATDAERDIFLLLIERVSGIGPATAIAILGSLSVEQFKQAVVGGDVSGIARAKGVGK 143 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K A RI+ ELK K ++ Q A +A AL+ LG+ Q ++ Sbjct: 144 KTAERIVLELKDKVGLAATWEAQAQGAT----------SQAAGDAELALIALGFKQVESR 193 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ + LK + AD ++IR ALR+++ Sbjct: 194 KAIAAHLKDHPD-ADVDELIRAALRSMN 220 >gi|110679369|ref|YP_682376.1| Holliday junction DNA helicase RuvA [Roseobacter denitrificans OCh 114] gi|122972806|sp|Q168A3|RUVA_ROSDO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|109455485|gb|ABG31690.1| Holliday junction DNA helicase RuvA, putative [Roseobacter denitrificans OCh 114] Length = 218 Score = 158 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 71/216 (32%), Positives = 117/216 (54%), Gaps = 11/216 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGKI G +E D+VLIDV+GV Y+++C RTL+ L +G+ L+ + +R+D ++L Sbjct: 1 MIGKITGRLEYRASDHVLIDVRGVGYLVFCSERTLAALPGVGEVVALYTDLLVREDVMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++W LL SVQGVGA+ ++ +L + A + +I L + + G+ KI Sbjct: 61 FGFTTLTEKEWHRLLTSVQGVGAKASLAILGTLGADGVSRAIALGDWNAVKAAKGVGPKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQ----------AHICSMPSFAINAISALVNL 170 A R++ +LK KA S+ + + + + + PS A+SAL NL Sbjct: 121 AQRVVLDLKDKAPSVMGMSDTQATVAAQSSDAVIETRAAPSPVVQNPSAQAEALSALSNL 180 Query: 171 GYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 GY A AV + + A+ +IR AL+ ++ Sbjct: 181 GYAPGDAAAAVAQAAGELPD-AETPDLIRAALKRLA 215 >gi|71275803|ref|ZP_00652087.1| DNA recombination protein, RuvA [Xylella fastidiosa Dixon] gi|71900402|ref|ZP_00682535.1| DNA recombination protein, RuvA [Xylella fastidiosa Ann-1] gi|170730217|ref|YP_001775650.1| Holliday junction DNA helicase RuvA [Xylella fastidiosa M12] gi|229560142|sp|B0U2E1|RUVA_XYLFM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|71163381|gb|EAO13099.1| DNA recombination protein, RuvA [Xylella fastidiosa Dixon] gi|71729834|gb|EAO31932.1| DNA recombination protein, RuvA [Xylella fastidiosa Ann-1] gi|167965010|gb|ACA12020.1| holliday junction binding protein, DNA helicase [Xylella fastidiosa M12] Length = 194 Score = 158 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 91/204 (44%), Gaps = 13/204 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV GV Y + P+ T L +G LF + D L Sbjct: 1 MIGRLRGVLTSKTPPWLVVDVCGVGYELEVPMSTFCELPDVGYEVNLFTHYTQKDDSAAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS+ +R+ F LQ V G+G ++A+ VLS ++ I + + IPGI K Sbjct: 61 YGFLSESERRLFRHLQRVSGIGTKIALAVLSSVSVDTFAGLIQAGDVNALTVIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ +A + N A AL LGY +A Sbjct: 121 AERMLVELRDRAADFN----------NGISTSGKLNLDTVSEAALALQQLGYKPAEAARM 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + ++A I+ AL+A Sbjct: 171 ARDAGTESDDVATV---IKKALQA 191 >gi|107021766|ref|YP_620093.1| Holliday junction DNA helicase RuvA [Burkholderia cenocepacia AU 1054] gi|116688712|ref|YP_834335.1| Holliday junction DNA helicase motor protein [Burkholderia cenocepacia HI2424] gi|161525864|ref|YP_001580876.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans ATCC 17616] gi|170732009|ref|YP_001763956.1| Holliday junction DNA helicase RuvA [Burkholderia cenocepacia MC0-3] gi|189349415|ref|YP_001945043.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans ATCC 17616] gi|221202296|ref|ZP_03575330.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans CGD2M] gi|221209110|ref|ZP_03582104.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans CGD2] gi|221214501|ref|ZP_03587472.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans CGD1] gi|123371880|sp|Q1BZ35|RUVA_BURCA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230524|sp|A0K4L5|RUVA_BURCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560009|sp|B1JVV4|RUVA_BURCC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560011|sp|A9AH72|RUVA_BURM1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|105891955|gb|ABF75120.1| Holliday junction DNA helicase RuvA [Burkholderia cenocepacia AU 1054] gi|116646801|gb|ABK07442.1| Holliday junction DNA helicase RuvA [Burkholderia cenocepacia HI2424] gi|160343293|gb|ABX16379.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans ATCC 17616] gi|169815251|gb|ACA89834.1| Holliday junction DNA helicase RuvA [Burkholderia cenocepacia MC0-3] gi|189333437|dbj|BAG42507.1| holliday junction DNA helicase [Burkholderia multivorans ATCC 17616] gi|221165758|gb|EED98233.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans CGD1] gi|221171014|gb|EEE03467.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans CGD2] gi|221177870|gb|EEE10283.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans CGD2M] Length = 193 Score = 158 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 104/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + ++L+D GV Y I P+ T L + G+ L + +R+D L Sbjct: 1 MIGRIAGILLEKNPPHLLVDCNGVGYEIDVPMSTFYNLPQTGERVVLLTQQIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L + G+GAR+A+ VLS ++ EL +++ +Q++ + ++PGI K Sbjct: 61 YGFLTPQERTTFRELLKITGIGARMALAVLSGMSVQELAQAVTMQDAARLTRLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ++ + A S A + ++AL+ LGY + + A Sbjct: 121 AERL-----------LLELKGKLGADLGALAGAASASDHATDILNALLALGYSEKEGLAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +V S+ I+LAL+A+S Sbjct: 170 IKNV----PAGTGVSEGIKLALKALS 191 >gi|258543669|ref|YP_003189102.1| Holliday junction DNA helicase RuvA [Acetobacter pasteurianus IFO 3283-01] gi|256634747|dbj|BAI00723.1| Holliday junction resolvase RusA [Acetobacter pasteurianus IFO 3283-01] gi|256637803|dbj|BAI03772.1| Holliday junction resolvase RusA [Acetobacter pasteurianus IFO 3283-03] gi|256640857|dbj|BAI06819.1| Holliday junction resolvase RusA [Acetobacter pasteurianus IFO 3283-07] gi|256643912|dbj|BAI09867.1| Holliday junction resolvase RusA [Acetobacter pasteurianus IFO 3283-22] gi|256646967|dbj|BAI12915.1| Holliday junction resolvase RusA [Acetobacter pasteurianus IFO 3283-26] gi|256650020|dbj|BAI15961.1| Holliday junction resolvase RusA [Acetobacter pasteurianus IFO 3283-32] gi|256653010|dbj|BAI18944.1| Holliday junction resolvase RusA [Acetobacter pasteurianus IFO 3283-01-42C] gi|256656064|dbj|BAI21991.1| Holliday junction resolvase RusA [Acetobacter pasteurianus IFO 3283-12] Length = 202 Score = 158 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 109/206 (52%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + +IDV GV Y++ RTL+ L + L +ET +R+D I L Sbjct: 1 MIAFLCGLVIQVDLGSCVIDVNGVGYLVAASTRTLAALPNPPEKARLLIETVVREDAILL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ +R+WF LL SVQGVGA+VA+G+LS ++ ELV +++ + + + PG+ ++ Sbjct: 61 YGFMESAEREWFRLLTSVQGVGAKVALGILSTLSPGELVAALMTSDKASLTRAPGVGGRL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TEL+ KA + A S +A+ AL LG+ + +A Sbjct: 121 AERILTELRDKAGKMPGGG-----GGITIPAMATPAGSIEADALMALAGLGFRRAEAAPV 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V V+ A +IR +L+ ++ Sbjct: 176 VRKVMDAHGAAATLDLVIRDSLKDLA 201 >gi|237748980|ref|ZP_04579460.1| RuvA protein [Oxalobacter formigenes OXCC13] gi|229380342|gb|EEO30433.1| RuvA protein [Oxalobacter formigenes OXCC13] Length = 193 Score = 158 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 98/206 (47%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I+G + +L+D QGV Y I P+ T L +G+ TLF +R+D L Sbjct: 1 MIGRIQGILLQKNPPQLLVDCQGVGYEIDVPMSTFYNLPAVGEKVTLFTHLAIREDAHVL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L + GVGAR A+ +LS ++ ++ +++ LQ++ + IPGI K Sbjct: 61 YGFGSLDERALFRQLIRISGVGARTALALLSGLSVNDMSQAVALQDASRLTSIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ++ + + +AL+ LGY + + A Sbjct: 121 AERL-----------LLELKGKLETGALSAISSSVQNDAMADIQNALLALGYSEKETILA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + V N S I++AL+A+S Sbjct: 170 IKQV----PNDCSVSDGIKMALKALS 191 >gi|197121426|ref|YP_002133377.1| Holliday junction DNA helicase RuvA [Anaeromyxobacter sp. K] gi|229470528|sp|B4UFY0|RUVA_ANASK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|196171275|gb|ACG72248.1| Holliday junction DNA helicase RuvA [Anaeromyxobacter sp. K] Length = 197 Score = 158 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G I +D+ ++DV GV Y+++ +L+ L G+ L V TH+R+D + L Sbjct: 1 MIARLAGRIAEKRDDHAIVDVGGVGYLVHLSQLSLASLPPPGEPAALRVYTHVREDALDL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ + F L V+GVG R A +LS I A EL +++ + + ++ GI K Sbjct: 61 YGFATEDEEAVFRALIDVKGVGPRAAQNILSGIEARELAQAVAQGDVARLTKVQGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K ++L+ A + +AL+NLGY QA Sbjct: 121 AERLVLELKEKLVALARAAG---------PARAGAEADVLEQLRTALLNLGYRPPQAEG- 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V L+ ++R AL+ + Sbjct: 171 VAEALRDSAEGRPLDDLLREALKRL 195 >gi|94971750|ref|YP_593798.1| Holliday junction DNA helicase RuvA [Candidatus Koribacter versatilis Ellin345] gi|94553800|gb|ABF43724.1| Holliday junction DNA helicase subunit RuvA [Candidatus Koribacter versatilis Ellin345] Length = 202 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 67/205 (32%), Positives = 105/205 (51%), Gaps = 14/205 (6%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 I ++G I + V++D GV Y + + T S LG G +L+V TH+R+D + L+ Sbjct: 11 IAHLRGKILAKRPNQVIVDCGGVGYDVTISVPTFSELGADGTEASLYVHTHVREDALALY 70 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF+ ++Q F L +V G+G ++A+ VLS + A E+V +I + + +IPG+ K A Sbjct: 71 GFVHPQEKQLFERLLTVSGIGPKLAITVLS-MAANEVVGAIRGNDVTRLTKIPGVGKKTA 129 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 R++ ELK K + + + I + ISALVNLGY + A AV Sbjct: 130 ERMILELKDKLETFGATPE------------IPKASQAEEDVISALVNLGYQRAAAEQAV 177 Query: 182 VSVLKKEKNIADDSQIIRLALRAIS 206 LK + A Q+ R AL +S Sbjct: 178 TRALKTGSSSA-FDQLFRGALGMLS 201 >gi|319407733|emb|CBI81380.1| holliday junction DNA helicase RuvA [Bartonella sp. 1-1C] Length = 215 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 78/207 (37%), Positives = 130/207 (62%), Gaps = 1/207 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG +E ++ D++++DVQGV YII+ P R S L IG+ +LF+ETH+R++ IRL Sbjct: 1 MIGKLKGILEHIFSDHIILDVQGVGYIIFIPNRLHSSLPAIGESLSLFIETHVREEAIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++WF LLQ+V GVGA+VA+ +L ++ EL ++I L + I++ PG+ K+ Sbjct: 61 FGFATKSEQEWFCLLQNVPGVGAKVALAILGSLSVNELTQAITLNDIATISRAPGVGKKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 + RI++ELK K + S ++ + + +A+ AL+ LG+ D+ATTA Sbjct: 121 SERIVSELKNKTLQFSKEDNKNPAFSSSLTFSSEEEYQPTNDALLALIKLGFDHDKATTA 180 Query: 181 VVSVLKKEKNIADDSQII-RLALRAIS 206 + S + K S ++ R +L+ +S Sbjct: 181 LASAVSALKGETVSSALLVRHSLKLLS 207 >gi|164687538|ref|ZP_02211566.1| hypothetical protein CLOBAR_01179 [Clostridium bartlettii DSM 16795] gi|164603312|gb|EDQ96777.1| hypothetical protein CLOBAR_01179 [Clostridium bartlettii DSM 16795] Length = 197 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 95/205 (46%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +E +Y D ++++ G+ Y I T + K G +F + +R+D + L Sbjct: 1 MYSYIKGTVEEIYLDRIVLENNGIGYEINVSSFTAQSVQK-GKDAKIFTKLIVREDDMSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF S + + F LL SV +G +V +G+LS T +L I+ ++ +++ PG+ K Sbjct: 60 CGFASRKELEMFKLLTSVSKIGPKVGLGILSCATPPQLSAYILSEDIAKLSKCPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K S+ + + A+ AL+ LGY +A A Sbjct: 120 AERIILELKDKVDKESAEFEATLFNQAPTGLE-------LDEAVEALLALGYSNVEAKEA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V K + +I+ AL + Sbjct: 173 VQKFKK---DGLKTEDLIKKALTYL 194 >gi|262375568|ref|ZP_06068801.1| Holliday junction DNA helicase RuvA [Acinetobacter lwoffii SH145] gi|262309822|gb|EEY90952.1| Holliday junction DNA helicase RuvA [Acinetobacter lwoffii SH145] Length = 200 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 106/206 (51%), Gaps = 7/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + L VL++V GV Y I P+ T L K G TL+ +R+D L Sbjct: 1 MIGCLIGEVLALEAPTVLLNVNGVGYEIDTPLTTFCQLQK-GQKITLWTHLAVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ ++ F L V GVG ++A+G+LS ++ L+ ++ ++ + ++PG+ K Sbjct: 60 YGFINAQEKTIFRTLLKVNGVGPKMALGILSTLSVEMLIHTVEHEDINTLVKVPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+M EL+ + +++S S + Q S A +AL +LGY +A Sbjct: 120 AERLMIELRDRFKAMASGAAPSNSTAPQIQFM---GNSAVAEAEAALQSLGYKPVEAQKL 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + + + S IIR AL++++ Sbjct: 177 VNAA---KGEFTEASDIIRAALKSMN 199 >gi|220916123|ref|YP_002491427.1| Holliday junction DNA helicase RuvA [Anaeromyxobacter dehalogenans 2CP-1] gi|254766937|sp|B8JF04|RUVA_ANAD2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|219953977|gb|ACL64361.1| Holliday junction DNA helicase RuvA [Anaeromyxobacter dehalogenans 2CP-1] Length = 197 Score = 157 bits (398), Expect = 7e-37, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G I +D+ ++DV GV Y+++ +L+ L G+ L V TH+R+D + L Sbjct: 1 MIARLAGRIAEKRDDHAIVDVGGVGYLVHLSQLSLASLPPPGEPAALRVYTHVREDALDL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ + F L V+GVG R A +LS I A EL +++ + + ++ GI K Sbjct: 61 YGFATEDEEAVFRALIDVKGVGPRAAQNILSGIEARELAQAVAQGDVARLTKVQGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K ++L+ A + +AL+NLGY QA Sbjct: 121 AERLVLELKEKLVALARAAG---------PARAGAEADVLEQLRTALLNLGYRPPQAEG- 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V L+ +++R AL+ + Sbjct: 171 VAEALRDSAEGRPLDELLREALKLL 195 >gi|258545752|ref|ZP_05705986.1| Holliday junction DNA helicase RuvA [Cardiobacterium hominis ATCC 15826] gi|258518997|gb|EEV87856.1| Holliday junction DNA helicase RuvA [Cardiobacterium hominis ATCC 15826] Length = 197 Score = 157 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 94/204 (46%), Gaps = 11/204 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + ++++ GV Y + P+ L + + G LFV +R D L Sbjct: 1 MIAYLRGTVLVKQAGQIILETGGVGYELAVPLSVLERVHE-GQEAALFVHHAVRDDGHYL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + R WF L V G+G ++A+ +LS L +++ Q+S + ++PG+ K Sbjct: 60 YGFHTLEQRSWFRELIRVSGIGPKIALLILSGFDVEMLAQTVRAQDSAALVKLPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL + L + Q I S ++A ALV LGY +A Sbjct: 120 AERLLVELNDRVGRL-------PTAGGAGQGSILRPASARLDAEEALVALGYKPAEAAQL 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + V + AD +IR AL+ Sbjct: 173 IERV---GDDDADTDTLIRRALQL 193 >gi|295399354|ref|ZP_06809336.1| Holliday junction DNA helicase RuvA [Geobacillus thermoglucosidasius C56-YS93] gi|312110086|ref|YP_003988402.1| Holliday junction DNA helicase RuvA [Geobacillus sp. Y4.1MC1] gi|294978820|gb|EFG54416.1| Holliday junction DNA helicase RuvA [Geobacillus thermoglucosidasius C56-YS93] gi|311215187|gb|ADP73791.1| Holliday junction DNA helicase RuvA [Geobacillus sp. Y4.1MC1] Length = 199 Score = 157 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 101/205 (49%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G ++ + +Y++ID G+ Y I+ P S T++ ++R+D + L Sbjct: 1 MIEFIRGYVDYVCPEYIVIDNNGIGYQIFTP-NPFSFQESRDTIVTVYTYQYVREDMLAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+G + + +L+ +LVE+I +N + + PG+ K Sbjct: 60 YGFRTREERALFAKLLQVSGIGPKGGLAILAAGRPEQLVEAIEQENETFLCKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK ++++ D+ S S AI AL LGY + + Sbjct: 120 ARQMILDLKGKLTAVAARTYPDLF----HPEEEPSHLSALEEAIEALKALGYAEREIQKV 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V S++K+ Q ++ AL+ + Sbjct: 176 VPSLMKEN---LSTDQYVKRALQQL 197 >gi|217976203|ref|YP_002360350.1| Holliday junction DNA helicase RuvA [Methylocella silvestris BL2] gi|254767375|sp|B8EJI5|RUVA_METSB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|217501579|gb|ACK48988.1| Holliday junction DNA helicase RuvA [Methylocella silvestris BL2] Length = 209 Score = 157 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 79/206 (38%), Positives = 122/206 (59%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ EDYV++DV GV Y+++C RTL L G L ++T MR+D I+L Sbjct: 1 MIGKLKGLVDSQGEDYVILDVNGVGYVVHCSSRTLQNLPPQGQATALAIDTQMREDSIKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +R+WF LLQSVQGVGA+VA+ + + E+V +I Q+ A+ G+ K+ Sbjct: 61 YGFASETEREWFRLLQSVQGVGAKVALAIQGVLRPGEIVTAIAAQDRAAFARASGVGAKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ ELK KA +L + + ++ +AIS LVNLG+G+ QA A Sbjct: 121 AARILAELKDKAPALGASLHTLAGAGSEGAGVEAPASGAVSDAISVLVNLGFGRSQAAVA 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + K + A + + AL+ ++ Sbjct: 181 VAASSKALGSGAGAGDLAKRALQELA 206 >gi|189345865|ref|YP_001942394.1| Holliday junction DNA helicase RuvA [Chlorobium limicola DSM 245] gi|229560015|sp|B3EFD2|RUVA_CHLL2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189340012|gb|ACD89415.1| Holliday junction DNA helicase RuvA [Chlorobium limicola DSM 245] Length = 203 Score = 157 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 51/202 (25%), Positives = 99/202 (49%), Gaps = 5/202 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G + D ++DV G+ Y T L G+ L+ +++D L Sbjct: 1 MFAYFRGRLTSAMPDEAVVDVSGIGYRFLVSAFTYRQLPPPGEDVLLYAHLSVKEDAFLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +RQ F LL GVG ++A+ VLS + E+ E+I+ + + I G+ K Sbjct: 61 YGFSSESERQLFRLLLLTTGVGPKLALAVLSGLQVHEVHEAIMANAPERLYGISGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ EL+ + + +S + ++ + + +A++AL+ LG+ + A A Sbjct: 121 AARIILELRDRILKMSPDGGKTIASGSGGNLAL----QIKDDALNALITLGFSKPAAQKA 176 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 V +L+ ++ ++++ AL Sbjct: 177 VTGILEGNPSL-SVEEVVKSAL 197 >gi|225181939|ref|ZP_03735373.1| Holliday junction DNA helicase RuvA [Dethiobacter alkaliphilus AHT 1] gi|225167379|gb|EEG76196.1| Holliday junction DNA helicase RuvA [Dethiobacter alkaliphilus AHT 1] Length = 200 Score = 157 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 106/205 (51%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I+G + +D V++D QG+ + I P LS L + + LF +R+D + L Sbjct: 1 MFNYIRGTLVQKGKDTVVLDNQGIGWQISVPSTVLSGLHSLDEEVKLFTYLAVREDDLHL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ D F LL SV G+G + A+G+LS ++A E +++ +N K + ++PG+ K Sbjct: 61 YGFLTADDLSLFKLLISVSGIGPKAALGILSSLSAAEFHLAVMHENVKALTRVPGVGPKS 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K +L + + S +A+ ALV LGY +A A Sbjct: 121 AKRLIVELKEKVAALGTPQTVSAT------PQAGGTTSAYHDALEALVALGYNGSEAQAA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ ++ + ++I+ AL + Sbjct: 175 LQTI--EDADRLSTEELIKKALAHL 197 >gi|193213411|ref|YP_001999364.1| Holliday junction DNA helicase RuvA [Chlorobaculum parvum NCIB 8327] gi|229560016|sp|B3QQG1|RUVA_CHLP8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|193086888|gb|ACF12164.1| Holliday junction DNA helicase RuvA [Chlorobaculum parvum NCIB 8327] Length = 204 Score = 157 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 103/205 (50%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G + + +++V G+ Y ++ T S L G L+ H+R+D +L Sbjct: 1 MFAFLRGELVTASREEAVVEVSGIGYRLHISSGTSSRLPVPGSPVFLYTHYHVREDLQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL + + Q F LL S+ GVG ++A+ VLS ++ E+ E+I+ + + I G+ K Sbjct: 61 FGFLDEEELQLFRLLLSISGVGPKLAIAVLSGLSVGEIQEAIVSNRPETLFGISGVGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ EL+ K + + + + S +A++AL LG+ + A A Sbjct: 121 AARIILELRDKILKIQPTSSAKAGAPS----AVLSATQLIDDAVAALTTLGFPKASAQKA 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V VL+ + +++R +L A+ Sbjct: 177 VSKVLETTPGL-SVEELVRTSLAAM 200 >gi|84516659|ref|ZP_01004018.1| Holliday junction DNA helicase motor protein [Loktanella vestfoldensis SKA53] gi|84509695|gb|EAQ06153.1| Holliday junction DNA helicase motor protein [Loktanella vestfoldensis SKA53] Length = 218 Score = 157 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 71/216 (32%), Positives = 118/216 (54%), Gaps = 11/216 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGKI G +E D+VLIDV+GV Y++Y R ++ L + G+ L+ + +R+D ++L Sbjct: 1 MIGKIAGRLEYRSTDHVLIDVRGVGYLVYVSDRVMASLPRNGEAVALYTDLLVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++W LL SVQG+GA+ ++ +L + A + +I L + +A+ G+ K Sbjct: 61 FGFTTLVEKEWHRLLMSVQGIGAKASLAILGALGADGVSRAIALGDWNAVAKARGVGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP----------SFAINAISALVNL 170 A R++ ELK KA + ++ + E P + +A+SAL NL Sbjct: 121 AQRVIIELKDKAPGVMALGAGLSAATGDEVIEADPAPAPRATPQPASTAQADAMSALANL 180 Query: 171 GYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 GY A +AVV L + AD +IR AL+ ++ Sbjct: 181 GYAPGDAASAVVQALGADPQ-ADAGVLIRAALQLLA 215 >gi|218133570|ref|ZP_03462374.1| hypothetical protein BACPEC_01437 [Bacteroides pectinophilus ATCC 43243] gi|217990945|gb|EEC56951.1| hypothetical protein BACPEC_01437 [Bacteroides pectinophilus ATCC 43243] Length = 203 Score = 157 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 103/207 (49%), Gaps = 7/207 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI IKG + + E ++++ G+ I P + + G + ++++D + Sbjct: 1 MISYIKGELTEVSETSIVVETSSGIGMNIIVPQTVIDKMPSCGSMVKIHTYLNVKEDSMT 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF++ D F LL +V G+G + A+ +LS IT +L +++ + K I++ PGI K Sbjct: 61 LYGFINREDVDIFRLLITVNGIGPKGALAILSTITPDDLRFAVLSDDVKAISRAPGIGAK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELK K + + ++ E+ + + ALV LGYG+ +A Sbjct: 121 TAQRMIIELKDKLK----LEEAFEIRLSHEEVDDLPAGDARNDTVQALVALGYGRSEAAR 176 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV V + D Q+I+ AL+ ++ Sbjct: 177 AVNMV--DGADSMDSEQLIKAALKKLA 201 >gi|255281765|ref|ZP_05346320.1| holliday junction DNA helicase RuvA [Bryantella formatexigens DSM 14469] gi|255267832|gb|EET61037.1| holliday junction DNA helicase RuvA [Bryantella formatexigens DSM 14469] Length = 202 Score = 157 bits (397), Expect = 9e-37, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 99/206 (48%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + E+ +I+ G+ + +Y R L + G L+ +R+D I+L Sbjct: 1 MIAFIKGTLVEAAENVAVIENNGIGFNVYITGRDAGQLVRGGMEVLLYTYMDVREDAIQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS D + F +L V G+G + A GVL+ I+A EL +++ + K I+ PGI K Sbjct: 61 YGFLSKDDLEIFRMLLKVNGIGPKAAQGVLTAISANELRFAVLADDIKAISAAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK K S + A + A+ ALV LGY A A Sbjct: 121 AQKLILELKDK---FSLQDTFEQKLAENTAAAAAAPNETQSEAVQALVALGYAGSDALKA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V +V E I+R AL+ IS Sbjct: 178 VKAVHATE--DMSTEDILRAALKHIS 201 >gi|218288865|ref|ZP_03493116.1| Holliday junction DNA helicase RuvA [Alicyclobacillus acidocaldarius LAA1] gi|218240954|gb|EED08131.1| Holliday junction DNA helicase RuvA [Alicyclobacillus acidocaldarius LAA1] Length = 208 Score = 157 bits (397), Expect = 9e-37, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 107/205 (52%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + L YV +DV+ V Y ++ RT + L +GD L+ H+R+D L Sbjct: 1 MIAFLRGRVAFLGPGYVDLDVRDVGYRVHVCDRTQAAL-NLGDTAFLYTHHHVREDGWAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L +V G+G ++A+ V+ E+V +I+ ++ + ++++PGI K+ Sbjct: 60 YGFETSEERALFERLVAVSGIGPKLALQVIGAAGVGEIVAAILAEDVESLSRLPGIGRKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASR++ EL+ K L+ + S S S A +A+SALV LGY +A A Sbjct: 120 ASRLVVELREKLDDLAPSALRPPSSA------PGSQGSTAEDAVSALVALGYRPREAEEA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +V + I+ AL + Sbjct: 174 VSAVGR---GRQSVEDTIKAALTYL 195 >gi|163869137|ref|YP_001610376.1| Holliday junction DNA helicase RuvA [Bartonella tribocorum CIP 105476] gi|189045742|sp|A9IYK7|RUVA_BART1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|161018823|emb|CAK02381.1| holliday junction DNA helicase RuvA [Bartonella tribocorum CIP 105476] Length = 204 Score = 157 bits (397), Expect = 9e-37, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 125/207 (60%), Gaps = 7/207 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG +E ++EDY+++DV GV Y+++ R L +G+ +LF+ETH+R++ IRL Sbjct: 1 MIGKLKGTLEHIFEDYIVLDVHGVGYVVFISNRLRPSLPSVGEALSLFIETHVREEAIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++WF +LQ+V GVGA+VA+ +L ++ EL ++I L + +I++ PG+ K+ Sbjct: 61 FGFATRAEQEWFCMLQNVPGVGAKVALAILGTLSPDELAQAIALNDVAMISRAPGVGKKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 + RI+ ELK K + + + A +A+SAL+ LG+ ++QA A Sbjct: 121 SERIVGELKSKTLPF------EQAVKTVSVPQREITHQPAHDALSALMKLGFEREQAARA 174 Query: 181 VVSVLKK-EKNIADDSQIIRLALRAIS 206 + + E + +IR +L+ +S Sbjct: 175 LALAMNALEGEAVSSALLIRHSLKLLS 201 >gi|254487107|ref|ZP_05100312.1| Holliday junction DNA helicase RuvA [Roseobacter sp. GAI101] gi|214043976|gb|EEB84614.1| Holliday junction DNA helicase RuvA [Roseobacter sp. GAI101] Length = 221 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 74/219 (33%), Positives = 115/219 (52%), Gaps = 14/219 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGKI G I+ D+VLIDV+GV Y++YC RTL+ L +G+ LF + +R+D ++L Sbjct: 1 MIGKITGRIDYRAPDHVLIDVRGVGYLVYCSDRTLAALPGVGEAVALFTDLVVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++W LL SVQGVGA+ ++ +L + + +I L + + G+ KI Sbjct: 61 FGFQTLAEKEWHRLLTSVQGVGAKASLAILGALGPDGVSRAIALGDWNAVKVAKGVGPKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA-------------HICSMPSFAINAISAL 167 A R++ +LK KA + ++ Q + +A S A+SAL Sbjct: 121 AQRVVLDLKDKAPGVMAMTQTLAEAHGEVEAVQVIEAPEAKRRPATAPNHSAQSEALSAL 180 Query: 168 VNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 NLGYG A AV + AD +IR AL+ ++ Sbjct: 181 GNLGYGPGDAAGAVAQAAGDMPD-ADTPTLIRAALKLLA 218 >gi|319899376|ref|YP_004159473.1| Holliday junction ATP-dependent DNA helicase ruvA [Bartonella clarridgeiae 73] gi|319403344|emb|CBI76903.1| Holliday junction ATP-dependent DNA helicase ruvA [Bartonella clarridgeiae 73] Length = 213 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 80/207 (38%), Positives = 129/207 (62%), Gaps = 3/207 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG +E +++D++++DVQGV YII+ P R S L IG+ +LF+ETH+R++ IRL Sbjct: 1 MIGKLKGILEHIFDDHIILDVQGVGYIIFIPNRLHSSLPAIGESLSLFIETHVREEAIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++WF LLQ+V GVGA+VA+ +L ++ +L ++I L + +I++ PG+ K+ Sbjct: 61 FGFTTKSEKEWFCLLQNVPGVGAKVALALLGTLSINDLSQAITLNDIAMISRAPGVGKKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 + RI++ELK K +L S + +A+ AL+ LG+ DQA TA Sbjct: 121 SERIVSELKNK--ALLSKENNKSFAFSSSSLPSEEKHQPTNDALLALIKLGFDHDQAATA 178 Query: 181 VVSVLKKEKNIADDSQII-RLALRAIS 206 V S L K S ++ R +L+ +S Sbjct: 179 VTSALSSLKGETVSSALLVRHSLKLLS 205 >gi|319404769|emb|CBI78370.1| holliday junction DNA helicase RuvA [Bartonella rochalimae ATCC BAA-1498] Length = 215 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 76/207 (36%), Positives = 130/207 (62%), Gaps = 1/207 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG +E ++ D++++DVQGV YII+ P R S L IG+ +LF+ETH+R++ IRL Sbjct: 1 MIGKLKGILEHIFSDHIILDVQGVGYIIFIPNRLHSSLPAIGESLSLFIETHVREEAIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++WF LLQ+V GVGA+VA+ +L ++ EL ++I L + I++ PG+ K+ Sbjct: 61 FGFATKSEQEWFCLLQNVPGVGAKVALAILGSLSVNELTQAITLNDIATISRTPGVGKKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 + RI++ELK K + S ++++ + +A+ AL+ LG+ ++A TA Sbjct: 121 SERIVSELKNKTLQFSKEDNKNLAFSSSLTFSSEEEYQPTNDALLALIKLGFDHEKAATA 180 Query: 181 VVSVLKKEKNIADDSQII-RLALRAIS 206 + S + K S ++ R +L+ +S Sbjct: 181 LASAVSALKGETISSALLVRHSLKLLS 207 >gi|307294738|ref|ZP_07574580.1| Holliday junction DNA helicase RuvA [Sphingobium chlorophenolicum L-1] gi|306879212|gb|EFN10430.1| Holliday junction DNA helicase RuvA [Sphingobium chlorophenolicum L-1] Length = 202 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 74/206 (35%), Positives = 112/206 (54%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+KG ++ D+ +IDV GV Y++ RTL+ LG +G+ T+ E + +D IRL Sbjct: 1 MIAKLKGRLDSTGLDHAIIDVGGVGYLVGASSRTLAALGPVGEAVTVHTEMLVSEDSIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF +R WF LL SVQGVG+RVA+ +LS + EL S+ + +IA+ G+ K+ Sbjct: 61 VGFARAEERDWFRLLTSVQGVGSRVALAILSALEPAELHRSVATGDKAMIARANGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI ELK K ++ + S + +AISAL NLG+ +A++A Sbjct: 121 AQRIANELKDKIGAV-----PTPAGGVGGGFAAVSGGGHSADAISALQNLGFKPAEASSA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + + A ++RLALR + Sbjct: 176 VAAAEGELGEDASLDALVRLALRKAA 201 >gi|257068561|ref|YP_003154816.1| Holliday junction DNA helicase, RuvA subunit [Brachybacterium faecium DSM 4810] gi|256559379|gb|ACU85226.1| Holliday junction DNA helicase, RuvA subunit [Brachybacterium faecium DSM 4810] Length = 205 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 107/205 (52%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + D ++++V G+ Y++ + LS + G TL E +R+D + L Sbjct: 1 MIASLTGRVARIDLDSLVLEVGGIGYLVRTTPQALSA-TRHGAELTLHTELVVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F ++QSV G+G R A+ VL+ + EL ++ Q++K I + PGI K+ Sbjct: 60 FGFPQLEEAETFRIVQSVSGIGPRTALAVLAVLEPEELRRAVAEQDAKTITRTPGIGPKV 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL GK + +S+ + + A + + + ALV LG+ + A A Sbjct: 120 AGRMLLELGGKLPAPASLSAVPGTPAAEAPATPSGADA---DVVEALVGLGWAEKAALKA 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V S + D ++++R ALR + Sbjct: 177 VESARADDGAELDSAELLRRALRGL 201 >gi|198282210|ref|YP_002218531.1| Holliday junction DNA helicase RuvA [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665092|ref|YP_002424575.1| Holliday junction DNA helicase RuvA [Acidithiobacillus ferrooxidans ATCC 23270] gi|226698723|sp|B5EJL8|RUVA_ACIF5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226725431|sp|B7J3G2|RUVA_ACIF2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|198246731|gb|ACH82324.1| Holliday junction DNA helicase RuvA [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517305|gb|ACK77891.1| Holliday junction DNA helicase RuvA [Acidithiobacillus ferrooxidans ATCC 23270] Length = 193 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G I ++ +DVQGV Y + P+ + G T+ +R+D L Sbjct: 1 MITSLTGTILQRRPPWLWLDVQGVGYELEMPLSGFYQMPAEGAALTVHTHLTIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ +R F LL V G+G +VA+ LS + A L +++ N+ + IPGI K Sbjct: 61 YGFMTVAERDMFRLLIRVNGIGGKVALACLSGLPAERLSQAVAEGNTAQLTAIPGIGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K ++ AI+AL+ LGY QA+ A Sbjct: 121 AERLVVELRDKMGGIAPGPMGRGGA-----------GDPRQEAIAALLTLGYKPAQASQA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + +IR +L+ +S Sbjct: 170 IAGLA----DGLGLEDLIRQSLQNLS 191 >gi|296117349|ref|ZP_06835939.1| Holliday junction DNA helicase RuvA [Gluconacetobacter hansenii ATCC 23769] gi|295976115|gb|EFG82903.1| Holliday junction DNA helicase RuvA [Gluconacetobacter hansenii ATCC 23769] Length = 204 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 109/206 (52%), Gaps = 3/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + + D +IDV GV Y++ RTLS L + + + +ET +R+D I L Sbjct: 1 MIAQLTGLVGQVEADRCVIDVGGVGYLVLASTRTLSALPQGPEVARVLIETVVREDAILL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ +R WF LL +VQGVGA+VA+ +LS + A+EL+ +I + + + G+ ++ Sbjct: 61 YGFIDAAERSWFRLLTTVQGVGAKVALAILSTLPASELIAAIASGDKSGLTRAAGVGARL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TEL+ K + + + +A+ AL LG+ + +A Sbjct: 121 AQRIVTELRDKCDGMPGGGAPGVVMAG---VKVTGNGGVMSDALLALSGLGFRRAEAQPV 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V V+ + D IIR +L+ ++ Sbjct: 178 VARVMDRLDGGGDLDVIIRESLKELA 203 >gi|221639992|ref|YP_002526254.1| Holliday junction DNA helicase RuvA [Rhodobacter sphaeroides KD131] gi|254767384|sp|B9KKV6|RUVA_RHOSK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|221160773|gb|ACM01753.1| Holliday junction ATP-dependent DNA helicase ruvA [Rhodobacter sphaeroides KD131] Length = 224 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 120/222 (54%), Gaps = 17/222 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ D+VLIDV+GV YI+Y RTL+ + +G+ L+ E +R+D ++L Sbjct: 1 MIGKVAGILDFRGPDHVLIDVRGVGYIVYVSDRTLASMPGLGEAVALYTELVVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++W LL +VQGVGA+ M +L + A +I L +++ I PGI KI Sbjct: 61 FGFPTMIEKEWHRLLMTVQGVGAKAGMAILGALGAEGTARAITLGDARSIQAAPGIGPKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQ----------------AHICSMPSFAINAI 164 A R++ ELK KA +L ++ + E A PS +A+ Sbjct: 121 AQRVVLELKSKAPALMAMGGGTAALAPSEPPEPQPGTSSGSRRKTRAPEPPRPSHTADAL 180 Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 SAL NLGY A AV + + AD + +IR AL+ ++ Sbjct: 181 SALANLGYQPTDAAQAVAQAAGESPD-ADTAALIRAALKLLA 221 >gi|83943911|ref|ZP_00956368.1| Holliday junction DNA helicase motor protein [Sulfitobacter sp. EE-36] gi|83845158|gb|EAP83038.1| Holliday junction DNA helicase motor protein [Sulfitobacter sp. EE-36] Length = 222 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 72/220 (32%), Positives = 115/220 (52%), Gaps = 15/220 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGKI G I+ D++LIDV+GV Y++YC RT++ L +G+ LF + +R+D ++L Sbjct: 1 MIGKITGRIDYRAPDHLLIDVRGVGYLVYCSDRTMAALPGVGEVVALFTDLVVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++W LL SVQGVGA+ ++ +L + + +I L + + G+ KI Sbjct: 61 FGFQTLAEKEWHRLLTSVQGVGAKASLAILGALGPDGVSRAIALGDWNAVKVAKGVGPKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAH--------------ICSMPSFAINAISA 166 A R++ +LK KA + ++ + +A S A+SA Sbjct: 121 AQRVVLDLKDKAPGVMAMTGSLAEAHGEVEATAEVIETAAPKRRPVAPPNQSAQAEALSA 180 Query: 167 LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 L NLGYG A AV + AD Q+IR AL+ ++ Sbjct: 181 LGNLGYGPGDAAGAVAQAAGEMPE-ADTPQLIRAALKLLA 219 >gi|154482944|ref|ZP_02025392.1| hypothetical protein EUBVEN_00642 [Eubacterium ventriosum ATCC 27560] gi|149736228|gb|EDM52114.1| hypothetical protein EUBVEN_00642 [Eubacterium ventriosum ATCC 27560] Length = 197 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 104/205 (50%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G +E + +D V++D G+ Y I+ TL +G IG+ ++ +R+D ++L Sbjct: 1 MISYISGVVEEIEKDKVVVDNNGIGYGIFASQSTLEQIG-IGEQVKIYTYFSVREDAMQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS + Q F LL V GVG + + +LS L +++ ++K I++ PGI K Sbjct: 60 YGFLSRQELQLFKLLIGVSGVGPKGGLAILSTCPGDSLSMAVLADDAKAISKAPGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELK K +DM + +A+ AL LGY Q A A Sbjct: 120 AQKIIIELKDKID------IEDMIAGETISKPMTKASGVVGDAVEALTALGYSQTMAYQA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + S+ + + D +I++ AL+ I Sbjct: 174 IKSI--ENVDGMDVEEILKKALKNI 196 >gi|325105978|ref|YP_004275632.1| Holliday junction DNA helicase subunit RuvA [Pedobacter saltans DSM 12145] gi|324974826|gb|ADY53810.1| Holliday junction DNA helicase subunit RuvA [Pedobacter saltans DSM 12145] Length = 194 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + Y++++ G+ Y I + T S L K + C L+ H+++D + Sbjct: 1 MYEYIDGKLVYKCPTYIVLEATGIGYHINISLNTFS-LVKDQEKCKLYTWLHVKEDGHTM 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F+ L SV GVG A +LS I+ E+ ++II +I I GI K Sbjct: 60 YGFADEGERRLFLHLISVNGVGPNTARMMLSSISPIEIEQAIIKGEVGLIKSIKGIGPKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +L+ K + I + AISALV LG+ ++ A A Sbjct: 120 AQRLIIDLQDKLQK----------SGDGTLIAIRQDYTAREEAISALVMLGFAKNNAEKA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V S +KK I +II++AL+++ Sbjct: 170 VDSAVKKSDKILSVEEIIKIALKSL 194 >gi|300309762|ref|YP_003773854.1| Holliday junction DNA resolvase DNA-binding subunit [Herbaspirillum seropedicae SmR1] gi|300072547|gb|ADJ61946.1| Holliday junction DNA resolvase, DNA-binding subunit protein [Herbaspirillum seropedicae SmR1] Length = 192 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 98/206 (47%), Gaps = 16/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L+D QGV Y + P+ T L +G+ TL +R+D L Sbjct: 1 MIGRLSGILLEKLPPNLLVDCQGVGYEVAVPMSTYYNLPALGEKVTLLTHLAIREDAHIL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L + GVGAR A+ +LS ++ +L +++ LQ + + ++PGI K Sbjct: 61 FGFGTAEERNTFKELIKISGVGARTALSILSGMSVADLAQAVTLQEAGRLTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R + + + + + ++AL+ LGY +AT A Sbjct: 121 AER------------LLLELKGKLGADLGAVAGVVHSDASADILNALLALGYSDKEATLA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + V + S I+LAL+A+S Sbjct: 169 MKQV----PKDSTVSDGIKLALKALS 190 >gi|189499398|ref|YP_001958868.1| Holliday junction DNA helicase RuvA [Chlorobium phaeobacteroides BS1] gi|229560017|sp|B3ELQ8|RUVA_CHLPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189494839|gb|ACE03387.1| Holliday junction DNA helicase RuvA [Chlorobium phaeobacteroides BS1] Length = 200 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 58/202 (28%), Positives = 100/202 (49%), Gaps = 8/202 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G + D +I+V GV Y++ T L + G + H+++D ++L Sbjct: 1 MFTYFRGELIEASPDEAVIEVSGVGYLLSISATTYRQLPEPGREVLVLAHLHVKEDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL + +RQ F LL S+ GVG ++A+ +LS + E+ E+I+ + + +I G+ K Sbjct: 61 FGFLEEEERQLFRLLLSISGVGPKLALAILSGLQVHEIQEAIVSNMPERLFEITGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ EL+ + + L + S S +A++ALV LG+ + A A Sbjct: 121 AARIVLELRDRILKLRP-------SGGTKSVSRLSESSMRDDAVNALVTLGFLRSVAQKA 173 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 V L +N ++R AL Sbjct: 174 VTESLTSLRNPQ-VEDLVRDAL 194 >gi|152980261|ref|YP_001352000.1| RuvA holliday junction DNA helicase [Janthinobacterium sp. Marseille] gi|166230559|sp|A6SUQ3|RUVA_JANMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|151280338|gb|ABR88748.1| RuvA holliday junction DNA helicase [Janthinobacterium sp. Marseille] Length = 191 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 94/206 (45%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L+D GV Y + P+ T L +GD L +R+D L Sbjct: 1 MIGRLSGVLLEKNPPQLLVDCNGVGYEVNVPMSTFYNLPGLGDKVVLLTHLTVREDAHIL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +R F L + G+GAR A+ +LS ++ +L ++I +Q + + +IPGI K Sbjct: 61 FGFGTNEERNVFKQLVKITGIGARTALSILSGMSVADLAQAITMQEAGRLTKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R +++ + ++AL+ LGY +A A Sbjct: 121 AER-------------LLLELKGKLGADLGVAGAVATDATSDILNALLALGYSDKEAMLA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + V S I+LAL+++S Sbjct: 168 LKQV----PAGTGVSDGIKLALKSLS 189 >gi|145295781|ref|YP_001138602.1| Holliday junction DNA helicase RuvA [Corynebacterium glutamicum R] gi|166230545|sp|A4QEN4|RUVA_CORGB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|140845701|dbj|BAF54700.1| hypothetical protein [Corynebacterium glutamicum R] Length = 206 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 107/206 (51%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +I+ GV Y + TLS L + G+ + +R+D ++L Sbjct: 1 MIASLRGTVINIGLSSAVIECNGVGYEVVTTPNTLSQLVR-GEEALVLTTMVVREDAMKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ + R+ F +LQ+V G+G R+A+ S ++ E+ ++I ++K + ++PG+ ++ Sbjct: 60 YGFIDNESREMFSVLQTVSGLGPRLALACESVLSPLEISQAITNADAKALQRVPGVGKRM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + ++ V + + ALV LG+ + Q+ A Sbjct: 120 ADRLIVELKGKVAAFAAGVVDEAGEQISLPNANIASEVVVEQVSQALVGLGFSEKQSDDA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V VL + ++ D S +R AL +S Sbjct: 180 VSFVLAADPSL-DTSGALRAALAKLS 204 >gi|157964465|ref|YP_001499289.1| Holliday junction DNA helicase RuvA [Rickettsia massiliae MTU5] gi|157844241|gb|ABV84742.1| Holliday junction DNA helicase RuvA [Rickettsia massiliae MTU5] Length = 212 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 71/203 (34%), Positives = 121/203 (59%), Gaps = 6/203 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ +DYV+IDV GV Y++Y +TL L + G+F LF+ETH+R++ I L Sbjct: 9 MIGKLSGKVDSQGDDYVIIDVNGVGYLVYASGKTLGKLAE-GEFYKLFIETHVREEHIHL 67 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ +F LLQSV G+G R+A+ +LS +T +++ ++ ++ + I G+ K+ Sbjct: 68 YGFLTLEEKNFFNLLQSVNGIGTRMALSILSSLTPSDIQIAVNNEDKNIFKAISGVGAKL 127 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK +SS +N + + I ALVNLG+ + +A A Sbjct: 128 AERVVLELKGKVAKISSGSAIIKDSLNIKNITPVASN----EVIKALVNLGFSRFEAQNA 183 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V ++ + I ++I+ AL+ Sbjct: 184 VQGIITQNPEI-SIDELIKTALK 205 >gi|91205752|ref|YP_538107.1| Holliday junction DNA helicase motor protein [Rickettsia bellii RML369-C] gi|122990902|sp|Q1RHZ6|RUVA_RICBR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|91069296|gb|ABE05018.1| Holliday junction DNA helicase RuvA [Rickettsia bellii RML369-C] Length = 203 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 74/203 (36%), Positives = 119/203 (58%), Gaps = 6/203 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ Y+DYV+IDV GV Y ++ +TLS L + G+ LF+ETH+R+D I L Sbjct: 1 MIGKLSGRVDSSYDDYVIIDVSGVGYRVFASAKTLSKLSE-GESYKLFIETHVREDHINL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS ++ +F LLQSV G+G R+A+ +LS +T T++ +I ++ + I G+ K+ Sbjct: 60 YGFLSLEEKSFFNLLQSVNGIGTRMALSILSTLTPTDIQIAINNEDKNIFKAISGVGAKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL K +SS +N + + I AL+N+G+ + +A A Sbjct: 120 AERIVRELSDKVAKISSSSAAIKDSLNIKGITPVASS----EVIKALINMGFSRFEAQNA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V ++ K I ++IR AL+ Sbjct: 176 VQEIITKNPEI-SIDELIRTALK 197 >gi|326386113|ref|ZP_08207737.1| Holliday junction DNA helicase RuvA [Novosphingobium nitrogenifigens DSM 19370] gi|326209338|gb|EGD60131.1| Holliday junction DNA helicase RuvA [Novosphingobium nitrogenifigens DSM 19370] Length = 206 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 73/204 (35%), Positives = 115/204 (56%), Gaps = 1/204 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+ G ++ D+ +IDV GV Y+++ RTL+ LG GD + E + + +RL Sbjct: 1 MIAKLTGLLDDTGPDWAVIDVNGVGYLVHASARTLAHLGNRGDRVVIHTELQVSETDMRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF S +R WF LL VQGVG++VA+ +LS +T EL + +S ++A+ G+ K+ Sbjct: 61 IGFASAGERAWFRLLTVVQGVGSKVALAILSALTVDELQRACAGGDSAMVARANGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ ELK KA L+ + +A + S S + +A+SAL NLG+ A TA Sbjct: 121 ASRIVNELKDKAGGLAGLSGGAGITAEPGEAPVVS-GSASADAVSALQNLGFKPAVAATA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V +++ A ++R+AL+ Sbjct: 180 VTKAIEELGEDASLGDLVRVALKR 203 >gi|332559001|ref|ZP_08413323.1| Holliday junction DNA helicase RuvA [Rhodobacter sphaeroides WS8N] gi|332276713|gb|EGJ22028.1| Holliday junction DNA helicase RuvA [Rhodobacter sphaeroides WS8N] Length = 224 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 120/222 (54%), Gaps = 17/222 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ D+VLIDV+GV YI+Y RTL+ + +G+ L+ E +R+D ++L Sbjct: 1 MIGKVAGILDFRGPDHVLIDVRGVGYIVYVSDRTLASMPGLGEGVALYTELVVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++W LL +VQGVGA+ M +L + A +I L +++ I PGI KI Sbjct: 61 FGFPTMIEKEWHRLLMTVQGVGAKAGMAILGALGAEGTARAITLGDARSIQAAPGIGPKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQ----------------AHICSMPSFAINAI 164 A R++ ELK KA +L ++ + E A PS +A+ Sbjct: 121 AQRVVLELKSKAPALMAMGGGTAALAPSEPPEPDPGTSSGSRRKTRAPEPPRPSHTADAL 180 Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 SAL NLGY A AV + + AD + +IR AL+ ++ Sbjct: 181 SALANLGYQPTDAAQAVAQAAGESPD-ADTAALIRAALKLLA 221 >gi|312129386|ref|YP_003996726.1| holliday junction DNA helicase subunit ruva [Leadbetterella byssophila DSM 17132] gi|311905932|gb|ADQ16373.1| Holliday junction DNA helicase subunit RuvA [Leadbetterella byssophila DSM 17132] Length = 191 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 61/203 (30%), Positives = 100/203 (49%), Gaps = 12/203 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + +IDVQGV Y++ ++T + L +G+ C LF +R+D L Sbjct: 1 MIAHLNGILSEKEPAQAVIDVQGVGYLLKISLQTSAALPAVGEKCKLFCLQIIREDAHTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L SV G+G +A+ LS +T E+V++I+ ++ K I I GI +K Sbjct: 61 YGFATREERVLFEHLISVSGIGPAIALVFLSSMTGPEIVQAIVSEDVKTIQGIKGIGLKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R + ELK K + A++ALV LG + A + Sbjct: 121 AQRAVIELKDKLKK------------EPMATTGTLPARIRMEALAALVTLGIPKATAEKS 168 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V ++LK+ ++I+L+LR Sbjct: 169 VDNILKRAPADITLEEVIKLSLR 191 >gi|163733514|ref|ZP_02140957.1| Holliday junction DNA helicase motor protein [Roseobacter litoralis Och 149] gi|161393302|gb|EDQ17628.1| Holliday junction DNA helicase motor protein [Roseobacter litoralis Och 149] Length = 218 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 73/216 (33%), Positives = 115/216 (53%), Gaps = 11/216 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGKI G +E D+VLIDV+GV Y+++C RTL+ L +G+ L+ + +R+D ++L Sbjct: 1 MIGKITGRLEYRTTDHVLIDVRGVGYLVFCSERTLAALPGVGEVVALYTDLLVREDVMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++W LL SVQGVGA+ ++ +L + A + +I L + + G+ KI Sbjct: 61 FGFTTLTEKEWHRLLTSVQGVGAKASLAILGTLGADGVSRAIALGDWNAVKAAKGVGPKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNK----------EQAHICSMPSFAINAISALVNL 170 A R++ +LK KA S+ + A + PS A+SAL NL Sbjct: 121 AQRVVLDLKDKAPSVMGMRDTQAIASADATDTVIETTATPAPVLQNPSAQAEALSALSNL 180 Query: 171 GYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 GYG A AV + A+ +IR AL+ ++ Sbjct: 181 GYGPGDAAGAVAEAAGEMPE-AETPDLIRAALKRLA 215 >gi|223938504|ref|ZP_03630396.1| Holliday junction DNA helicase RuvA [bacterium Ellin514] gi|223892766|gb|EEF59235.1| Holliday junction DNA helicase RuvA [bacterium Ellin514] Length = 201 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 95/205 (46%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + V +DV GV Y + P+ + L + G L +R+D L Sbjct: 1 MINFLHGKLVEALPTQVTVDVNGVGYEVLIPLSSFDKLPQPGGEVKLLTHLAIREDAHVL 60 Query: 61 FGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GF++ +R+ F LL +V G+G ++A+ +LS + T L ++ + K ++QI G+ K Sbjct: 61 YGFMTAGEREMFRLLMNTVTGIGPKLALNILSGMNVTMLRGAVSNGDVKSLSQISGVGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ ELK K + + Q + +A+ AL+ LG+ Q +A Sbjct: 121 TAERIVVELKDKMGAAGAWEAASA------QRSLSEPDQRVNDAVLALMALGFKQPEAHD 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V S A ++R +L+ Sbjct: 175 TVRSAQVLLGQQATVEDLVRASLKK 199 >gi|193214311|ref|YP_001995510.1| Holliday junction DNA helicase RuvA [Chloroherpeton thalassium ATCC 35110] gi|229560019|sp|B3QVA9|RUVA_CHLT3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|193087788|gb|ACF13063.1| Holliday junction DNA helicase RuvA [Chloroherpeton thalassium ATCC 35110] Length = 200 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 108/203 (53%), Gaps = 7/203 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ + G + + ++++V GV Y++ T L IG+ + ++R+D ++L Sbjct: 1 MLSYLSGTLIEKFSTEIVVEVNGVGYLLNISATTHEKLPAIGNQIKILTYLYVREDALQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ DR+ F LL ++ GVG ++A +LS ++ +L ES+I ++K + I G+ K Sbjct: 61 YGFITTEDREVFKLLIAISGVGPKLAQTILSGMSTAQLRESVIAGDTKALTAIAGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + L D+ KE A +A SAL++LG+ + A A Sbjct: 121 AERIILELKDKLVKL------DLKIDIKETAFRSDKQQVRNDAYSALISLGFTKSIAEKA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 + + + + + +IR+ALR Sbjct: 175 MRAAIAEVPDG-SVDDLIRVALR 196 >gi|239827859|ref|YP_002950483.1| Holliday junction DNA helicase RuvA [Geobacillus sp. WCH70] gi|259495646|sp|C5D5E9|RUVA_GEOSW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|239808152|gb|ACS25217.1| Holliday junction DNA helicase RuvA [Geobacillus sp. WCH70] Length = 201 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 104/205 (50%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G ++ + +Y++ID G+ Y I+ P S T++ ++R+D + L Sbjct: 1 MIEFVRGYVDYVCPEYIVIDNNGIGYQIFTP-NPFSFQESRDTIVTVYTYQYVREDTLAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+G + + +L+ +LVE+I +N + + PG+ K Sbjct: 60 YGFRTREERTLFAKLLQVSGIGPKGGLAILAAGQPEQLVEAIEQENETFLCKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK ++++ D+ + +E A S AI AL LGY + + Sbjct: 120 ARQMILDLKGKLTAVTAKTFPDLFHLQEESAR--PHLSALEEAIEALKALGYAEREIQKV 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V S++K+ Q ++ AL+ + Sbjct: 178 VPSLMKEN---LSTDQYVKRALQQL 199 >gi|19552871|ref|NP_600873.1| Holliday junction DNA helicase RuvA [Corynebacterium glutamicum ATCC 13032] gi|62390542|ref|YP_225944.1| Holliday junction DNA helicase RuvA [Corynebacterium glutamicum ATCC 13032] gi|20455261|sp|Q9AE10|RUVA_CORGL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|13346823|gb|AAK19839.1|AF331924_4 Holliday junction DNA-helicase RuvA [Corynebacterium glutamicum] gi|21324430|dbj|BAB99054.1| Holliday junction resolvasome DNA-binding subunit [Corynebacterium glutamicum ATCC 13032] gi|41325880|emb|CAF20043.1| Holliday junction resolvasome DNA-binding subunit [Corynebacterium glutamicum ATCC 13032] Length = 206 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 107/206 (51%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +I+ GV Y + TLS L + G+ + +R+D ++L Sbjct: 1 MIASLRGTVINIGLSSAVIECNGVGYEVVTTPNTLSQLVR-GEEALVLTTMVVREDAMKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ + R+ F +LQ+V G+G R+A+ S ++ E+ ++I ++K + ++PG+ ++ Sbjct: 60 YGFIDNESREMFSVLQTVSGLGPRLALACESVLSPLEISQAITNADAKTLQRVPGVGKRM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + ++ V + + ALV LG+ + Q+ A Sbjct: 120 ADRLIVELKGKVAAFAAGVVDEGGEQISLPNANIASEVVVEQVSQALVGLGFSEKQSDDA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V VL + ++ D S +R AL +S Sbjct: 180 VSFVLAADPSL-DTSGALRAALAKLS 204 >gi|121535579|ref|ZP_01667386.1| Holliday junction DNA helicase RuvA [Thermosinus carboxydivorans Nor1] gi|121305819|gb|EAX46754.1| Holliday junction DNA helicase RuvA [Thermosinus carboxydivorans Nor1] Length = 201 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 95/204 (46%), Gaps = 8/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + L D+ ++DV GV Y ++ P L G LF H+R+D + L Sbjct: 1 MIGYLRGTVVHLGVDHCILDVNGVGYRVFVPASGRQRLVA-GAQAALFTYLHVREDALLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + + F+LL V G+G + A+ +LS ++ ++ +N ++ +IPGI K Sbjct: 60 YGFHTQDEYELFLLLMDVSGIGPKAALNILSAVSPEGFRLAVSQKNVSLLTKIPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + S A A+ A++ LGY + Sbjct: 120 AERIILELKDKV----GTSGETGGDAGLAATGSASAIDQADEALQAMLALGYSHAEVAPV 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + V + ++IRL LR Sbjct: 176 LKKVRHE---AQSVEELIRLVLRE 196 >gi|74318231|ref|YP_315971.1| DNA recombination protein, RuvA [Thiobacillus denitrificans ATCC 25259] gi|90146182|sp|Q3SGT1|RUVA_THIDA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|74057726|gb|AAZ98166.1| DNA recombination protein, RuvA [Thiobacillus denitrificans ATCC 25259] Length = 191 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 99/206 (48%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + VL+DV GVCY I P+ T L IG+ L +R+D L Sbjct: 1 MIGRITGTLAAKQPPQVLVDVNGVCYEIDVPMSTFYNLPGIGEKVALLTHLAIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+++R F L V G+GA+ A+ VLS ++ +L +I Q I ++PGI K Sbjct: 61 YGFGSEVERAAFRELLKVSGIGAKTALSVLSGLSVNDLSAAIAAQEIGRIVKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + ++ + + + AL+ LGY + + Sbjct: 121 AERLLLELKGKPVFAGALASVPSAGAS-------------DDVRQALLALGYNERETAAT 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + + IR ALRA+S Sbjct: 168 VREL----PAGLAVGEAIRQALRALS 189 >gi|332530327|ref|ZP_08406273.1| Holliday junction DNA helicase RuvA [Hylemonella gracilis ATCC 19624] gi|332040313|gb|EGI76693.1| Holliday junction DNA helicase RuvA [Hylemonella gracilis ATCC 19624] Length = 194 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 94/206 (45%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + VL+D GV Y + + T L +G TL +R+D L Sbjct: 1 MIGRLSGTLIAKNPPEVLVDCHGVGYEVQVSMNTFYHLPVLGQPVTLLTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +R F L V GVG R A+ VLS ++ EL +++ Q + + PG+ K Sbjct: 61 YGFGEDAERAAFRELIKVSGVGPRTALAVLSGMSVAELAQAVTQQEMGRLLKAPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + V + AL+ LGY +A Sbjct: 121 AERLLLELKGKLGADIGVAGPGAMAAGH---------DAQADIQQALLALGYSDKEA--- 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + LK + S+ IRLAL++++ Sbjct: 169 -AAALKALPKDVEVSEGIRLALKSLA 193 >gi|188586412|ref|YP_001917957.1| Holliday junction DNA helicase RuvA [Natranaerobius thermophilus JW/NM-WN-LF] gi|229560108|sp|B2A5L5|RUVA_NATTJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|179351099|gb|ACB85369.1| Holliday junction DNA helicase RuvA [Natranaerobius thermophilus JW/NM-WN-LF] Length = 214 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 54/212 (25%), Positives = 98/212 (46%), Gaps = 6/212 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +I+G + + DY ++ G+ Y IY P + G L +R+D + L Sbjct: 1 MITRIRGEMLEITPDYCVVMAGGLGYKIYIPDNCQEEIPDPGQEIDLHTYLSVREDAMTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S F L+ +V G+G ++A+ ++ I TE S++ + ++PGI K Sbjct: 61 YGFTSGEQLAVFELIMNVSGIGPKIALALVGTIPPTEFYLSVLNDQVNQLTKVPGIGKKS 120 Query: 121 ASRIMTELKGKAISLSS------VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 A RI+ ELK K ++S + + E+ I + +AL +LGY Sbjct: 121 AQRIILELKEKVKDITSKDAYQDISASEKLDNTGEKLGISTRHKHLDELKAALSSLGYTN 180 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 + V ++ + D +++RLAL+ ++ Sbjct: 181 REIEKTVDAIQGQITEGQDMEELLRLALQKLN 212 >gi|149185526|ref|ZP_01863842.1| probable holliday junction DNA helicase protein [Erythrobacter sp. SD-21] gi|148830746|gb|EDL49181.1| probable holliday junction DNA helicase protein [Erythrobacter sp. SD-21] Length = 201 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 67/206 (32%), Positives = 113/206 (54%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+KG ++ D+ +IDV GV Y+++C +TLS LG+ G+ CT++ + + ++ +RL Sbjct: 1 MIAKLKGLLDETGADWAVIDVSGVGYLVHCSTKTLSKLGEKGEACTVYTDLQVSENDMRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF +R WF LL VQGVG++VA+ +LS ++ E+ ++ ++ +A+ G+ K+ Sbjct: 61 LGFAEAAERDWFRLLTQVQGVGSKVALAILSALSTGEVQQACSNGDAATVARAQGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K V A + +A+SAL NLG+ A A Sbjct: 121 AGRIVNELKDK------AGALPGGGVGGGTAPATPAGGASADAVSALENLGFKPAVAARA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + + A + +IR+AL+ + Sbjct: 175 VAAAQGELGEGASEGDLIRVALKRAA 200 >gi|30022496|ref|NP_834127.1| Holliday junction DNA helicase motor protein [Bacillus cereus ATCC 14579] gi|218234847|ref|YP_002369230.1| Holliday junction DNA helicase RuvA [Bacillus cereus B4264] gi|229048130|ref|ZP_04193701.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus AH676] gi|33301596|sp|Q817W3|RUVA_BACCR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226725434|sp|B7HE55|RUVA_BACC4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|29898054|gb|AAP11328.1| Holliday junction DNA helicase ruvA [Bacillus cereus ATCC 14579] gi|218162804|gb|ACK62796.1| Holliday junction DNA helicase RuvA [Bacillus cereus B4264] gi|228723233|gb|EEL74607.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus AH676] gi|326942202|gb|AEA18098.1| Holliday junction DNA helicase motor [Bacillus thuringiensis serovar chinensis CT-43] Length = 205 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 96/205 (46%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G +E + +YV+ID G+ Y I+ P + ++ ++R+D + L Sbjct: 1 MFEYVTGYVEYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMAL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+G + A+ +L+ ++V++I ++ K + + PG+ K Sbjct: 59 YGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK + D+ + + A+ AL LGY + + + Sbjct: 119 ARQMILDLKGKLADVVPDAFVDLFSDTERFDEKKGSSAELDEALEALRALGYAEREVSRV 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +LK+ Q I+ AL + Sbjct: 179 VPELLKE---SLTTDQYIKKALSLL 200 >gi|85709397|ref|ZP_01040462.1| Holliday junction DNA helicase motor protein [Erythrobacter sp. NAP1] gi|85688107|gb|EAQ28111.1| Holliday junction DNA helicase motor protein [Erythrobacter sp. NAP1] Length = 228 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 68/206 (33%), Positives = 113/206 (54%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+ G ++ + ED+ ++DVQGV Y+++C RTLS LG+ G+ CT+ + + ++ +RL Sbjct: 27 MIAKLSGRLDEIGEDWAIVDVQGVGYLVHCSARTLSALGEKGEACTVHTDLQVSENDMRL 86 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF +R WF LL VQGVG++V + +LS ++ EL ++ ++ +A+ G+ K+ Sbjct: 87 LGFAESAERDWFRLLTQVQGVGSKVGLAILSALSTGELRDACAAGDAASVARANGVGPKL 146 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K +L + A S + +SAL NLG+ A A Sbjct: 147 AGRIVNELKDKVGALPGGGMAGVPMGAAAPAGSASADA-----VSALENLGFKPAIAAQA 201 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + A + +IR+AL+ + Sbjct: 202 VARATAELGEDAPEGDLIRVALKKAA 227 >gi|238650928|ref|YP_002916784.1| Holliday junction DNA helicase motor protein [Rickettsia peacockii str. Rustic] gi|259495655|sp|C4K2D5|RUVA_RICPU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|238625026|gb|ACR47732.1| Holliday junction DNA helicase motor protein [Rickettsia peacockii str. Rustic] Length = 203 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 71/203 (34%), Positives = 121/203 (59%), Gaps = 6/203 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ +DYV+IDV GV Y++Y +TL L + G+F LF+ETH+R++ + L Sbjct: 1 MIGKLSGKVDSQGDDYVIIDVNGVGYLVYASDKTLGTLAE-GEFYKLFIETHVREEHMHL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ +F LLQSV G+G R+A+ +LS +T +++ ++ ++ + I G+ K+ Sbjct: 60 YGFLTLEEKIFFNLLQSVNGIGTRMALFILSSLTPSDIQIAVNNEDKNIFKAISGVGAKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELKGK +SS +N + + I ALVNLG+ + +A A Sbjct: 120 AERIVLELKGKVAKISSGSAIIKESLNIKNITPVASN----EVIKALVNLGFSRFEAQNA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V ++ + I ++I+ AL+ Sbjct: 176 VQGIITQNPEI-SIDELIKTALK 197 >gi|157827122|ref|YP_001496186.1| Holliday junction DNA helicase RuvA [Rickettsia bellii OSU 85-389] gi|166200254|sp|A8GWC2|RUVA_RICB8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|157802426|gb|ABV79149.1| Holliday junction DNA helicase motor protein [Rickettsia bellii OSU 85-389] Length = 203 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 74/203 (36%), Positives = 119/203 (58%), Gaps = 6/203 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ Y+DYV+IDV GV Y ++ +TLS L + G+ LF+ETH+R+D I L Sbjct: 1 MIGKLSGRVDSSYDDYVIIDVSGVGYRVFASAKTLSKLSE-GESYKLFIETHVREDHINL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS ++ +F LLQSV G+G R+A+ +LS +T T++ +I ++ + I G+ K+ Sbjct: 60 YGFLSLEEKSFFNLLQSVNGIGTRMALSILSALTPTDIQIAINNEDKNIFKAISGVGAKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL K +SS +N + + I AL+N+G+ + +A A Sbjct: 120 AERIVRELSDKVAKISSSSAAIKDSLNIKGITPVASS----EVIKALINMGFSRFEAQNA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V ++ K I ++IR AL+ Sbjct: 176 VQEIITKNPEI-SIDELIRTALK 197 >gi|206969835|ref|ZP_03230789.1| Holliday junction DNA helicase RuvA [Bacillus cereus AH1134] gi|228954705|ref|ZP_04116728.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229180697|ref|ZP_04308037.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus 172560W] gi|206735523|gb|EDZ52691.1| Holliday junction DNA helicase RuvA [Bacillus cereus AH1134] gi|228602842|gb|EEK60323.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus 172560W] gi|228805032|gb|EEM51628.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 205 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 96/205 (46%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G +E + +YV+ID G+ Y I+ P + ++ ++R+D + L Sbjct: 1 MFEYVTGYVEYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMAL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+G + A+ +L+ ++V++I ++ K + + PG+ K Sbjct: 59 YGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK + D+ + + A+ AL LGY + + + Sbjct: 119 ARQMILDLKGKLADVVPDAFVDLFSDTERFDENKGSSAELDEALEALRALGYAEREVSRV 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +LK+ Q I+ AL + Sbjct: 179 VPELLKE---ALTTDQYIKKALSLL 200 >gi|239947225|ref|ZP_04698978.1| holliday junction DNA helicase RuvA [Rickettsia endosymbiont of Ixodes scapularis] gi|239921501|gb|EER21525.1| holliday junction DNA helicase RuvA [Rickettsia endosymbiont of Ixodes scapularis] Length = 203 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 75/203 (36%), Positives = 122/203 (60%), Gaps = 6/203 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ +DYV+IDV GV Y++Y +TL L + G+F LF+ETH+R++ I L Sbjct: 1 MIGKLSGKVDSQGDDYVIIDVNGVGYLVYASGKTLGKLAE-GEFYKLFIETHVREEHIHL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ +F LLQSV G+G R+A+ +LS +T +++ +I ++ + I G+ K+ Sbjct: 60 YGFLTLEEKSFFNLLQSVNGIGTRMALSILSSLTPSDIQIAINNEDKNIFKAISGVGAKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELKGK +SS +N + + I ALVNLG+ + +A A Sbjct: 120 AERIVLELKGKVAKISSGSTIIKDSLNIKNITPVASN----EVIKALVNLGFSRFEAQNA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V S++ + I Q+I+ AL+ Sbjct: 176 VQSIITQNPEI-SIDQLIKTALK 197 >gi|325299672|ref|YP_004259589.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacteroides salanitronis DSM 18170] gi|324319225|gb|ADY37116.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacteroides salanitronis DSM 18170] Length = 199 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 101/205 (49%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + + ++D GV Y I + T S + + LF+ +R+D L Sbjct: 1 MIEYIKGELAEAAPAFAVVDCNGVGYGINISLNTYSAI-QGKKEVKLFIYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F+LL SV G+G A +LS ++ EL I N K++ + GI +K Sbjct: 60 YGFSTKQERELFLLLISVPGIGGNTARMILSALSPRELCNVISTGNDKLLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K S + + A++ALV LG+ Q + A Sbjct: 120 AQRIIVDLKDKIASTGIEEEASTVSSLSHTVNT----EIYEEAVAALVMLGFAQAPSQKA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V S+LK E + A ++I+LAL+ + Sbjct: 176 VASILKAEPDAA-VERVIKLALKML 199 >gi|218899590|ref|YP_002448001.1| Holliday junction DNA helicase RuvA [Bacillus cereus G9842] gi|228902949|ref|ZP_04067090.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis IBL 4222] gi|226725433|sp|B7IIT3|RUVA_BACC2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|218542616|gb|ACK95010.1| Holliday junction DNA helicase RuvA [Bacillus cereus G9842] gi|228856733|gb|EEN01252.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis IBL 4222] Length = 205 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 96/205 (46%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G +E + +YV+ID G+ Y I+ P + ++ ++R+D + L Sbjct: 1 MFEYVTGYVEYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMAL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+G + A+ +L+ ++V++I ++ K + + PG+ K Sbjct: 59 YGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK + D+ + + A+ AL LGY + + + Sbjct: 119 ARQMILDLKGKLADVVPDAFVDLFSDTERFDEKKGTSAELDEALEALRALGYAEREVSRV 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +LK+ Q I+ AL + Sbjct: 179 VPELLKE---SLTTDQYIKKALSLL 200 >gi|303230216|ref|ZP_07316984.1| Holliday junction DNA helicase RuvA [Veillonella atypica ACS-134-V-Col7a] gi|302515142|gb|EFL57116.1| Holliday junction DNA helicase RuvA [Veillonella atypica ACS-134-V-Col7a] Length = 202 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 106/205 (51%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + L+++ +DV GV Y +Y P T L + G TLF ++R+D ++L Sbjct: 1 MIGYVRGIVTHLFKESCYVDVHGVGYRVYVPTTTRQQLIE-GQEATLFTYLNVREDAMQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ + + F+LL SV G+G +V +G+LS +T ++I + + ++PGI K Sbjct: 60 YGFWTEDEYELFILLISVSGIGPKVGLGILSGMTPEAFKLAVINGQVQQLTKLPGIGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + ++ + + + + AI ALV+LGY Q Sbjct: 120 AERLVLELKDKLVKMTQISVETPAAIQPIGVTHSGPSG---EAIEALVSLGYAQKDVEAL 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V S+ D S +I+ L + Sbjct: 177 VESL---NDGSKDVSALIKACLVEL 198 >gi|303231814|ref|ZP_07318530.1| Holliday junction DNA helicase RuvA [Veillonella atypica ACS-049-V-Sch6] gi|302513521|gb|EFL55547.1| Holliday junction DNA helicase RuvA [Veillonella atypica ACS-049-V-Sch6] Length = 202 Score = 156 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 106/205 (51%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + L+++ +DV GV Y +Y P T L + G TLF ++R+D ++L Sbjct: 1 MIGYVRGIVTHLFKESCYVDVHGVGYRVYVPTTTRQQLIE-GQEATLFTYLNVREDAMQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ + + F+LL SV G+G +V +G+LS +T ++I + + ++PGI K Sbjct: 60 YGFWTEDEYELFILLISVSGIGPKVGLGILSGMTPEAFKLAVINGQVQQLTKLPGIGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + ++ + + S + AI ALV+LGY Q Sbjct: 120 AERLVLELKDKLVKMTQISVETPSAIQSIGVTHSGPSG---EAIEALVSLGYAQKDVEAL 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V S+ D S +I+ L + Sbjct: 177 VESL---NDGSKDVSALIKACLVEL 198 >gi|190893294|ref|YP_001979836.1| holliday junction DNA helicase [Rhizobium etli CIAT 652] gi|229560121|sp|B3PYZ4|RUVA_RHIE6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|190698573|gb|ACE92658.1| holliday junction DNA helicase protein [Rhizobium etli CIAT 652] Length = 204 Score = 156 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 94/206 (45%), Positives = 145/206 (70%), Gaps = 3/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + EDYVL+DV GVCY+ +C RTLS LG G+ C LF+ET++R+DQ++L Sbjct: 1 MIGKLKGTIDEIGEDYVLVDVHGVCYVAHCSARTLSKLGSAGEACVLFIETYVREDQLKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF++ L+R+WF LLQSVQGVGA+VA+ VLS +T +EL +I LQ+ +++ PG+ K+ Sbjct: 61 FGFMTALEREWFNLLQSVQGVGAKVALAVLSTLTPSELANAIALQDRAAVSRAPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++TELK +A + + + ++ K++ + +A+SAL NLGY +DQA A Sbjct: 121 AMRLVTELKNRAPAFAG---EAINIALKQELGEGVAAAPVADAVSALTNLGYSRDQAANA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + +K + AD +++IRL L+ ++ Sbjct: 178 VAAAMKTAGDGADSAKLIRLGLKELA 203 >gi|114330310|ref|YP_746532.1| Holliday junction DNA helicase RuvA [Nitrosomonas eutropha C91] gi|122314644|sp|Q0AJA4|RUVA_NITEC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|114307324|gb|ABI58567.1| Holliday junction DNA helicase subunit RuvA [Nitrosomonas eutropha C91] Length = 194 Score = 156 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 104/206 (50%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + + VL+DVQG Y I P+ T L IG TL +R+D L Sbjct: 1 MIGRITGLLLEKHPPLVLVDVQGTGYEIDVPMSTFCKLPDIGKKVTLHTHFWVREDVHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+++ +R F L + G+GAR + +LS ++ T+L ++++ Q+S + +IPGI K Sbjct: 61 FGFMTEQERALFRQLTKISGIGARTGLAILSGLSVTDLHQAVVSQDSIRLTKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K ++ + + + N + +SAL+ LGY + Sbjct: 121 AERLLLELRDKIDPVAILSEAGAAASN-----------VDKDILSALLALGYNGRE---- 165 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V L++ S I +L+ +S Sbjct: 166 VNRALEQLSEGVTVSDGIMQSLKFLS 191 >gi|226698801|sp|A4G1U8|RUVA_HERAR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|193222212|emb|CAL60485.2| Holliday junction DNA helicase ruvA [Herminiimonas arsenicoxydans] Length = 192 Score = 156 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 93/206 (45%), Gaps = 16/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L+D GV Y + P+ T L +G+ L +R+D L Sbjct: 1 MIGRLSGVLLEKNPPQLLVDCNGVGYEVNVPMSTFYNLPGLGEKVALLTHLTVREDAHIL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L + G+GAR A+ +LS ++ +L +I LQ + + +IPGI K Sbjct: 61 FGFGTAEERNVFKQLVKITGIGARTALSILSGMSVADLSNAITLQEAGRLTKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R + + + A + ++AL+ LGY +A A Sbjct: 121 AER------------LLLELKGKLGADLGAAGGVIHSDATSDILNALLALGYSDKEALLA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + V S I+LAL+A+S Sbjct: 169 MKQV----PAGTGVSDGIKLALKALS 190 >gi|30264491|ref|NP_846868.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. Ames] gi|42783552|ref|NP_980799.1| Holliday junction DNA helicase RuvA [Bacillus cereus ATCC 10987] gi|47566611|ref|ZP_00237433.1| Holliday junction DNA helicase RuvA [Bacillus cereus G9241] gi|47778316|ref|YP_021298.2| Holliday junction DNA helicase RuvA [Bacillus anthracis str. 'Ames Ancestor'] gi|49187311|ref|YP_030563.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. Sterne] gi|49481508|ref|YP_038471.1| Holliday junction DNA helicase RuvA [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141085|ref|YP_085744.1| Holliday junction DNA helicase motor protein [Bacillus cereus E33L] gi|65321787|ref|ZP_00394746.1| COG0632: Holliday junction resolvasome, DNA-binding subunit [Bacillus anthracis str. A2012] gi|118479576|ref|YP_896727.1| Holliday junction DNA helicase RuvA [Bacillus thuringiensis str. Al Hakam] gi|165871987|ref|ZP_02216628.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0488] gi|167636186|ref|ZP_02394490.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0442] gi|167640739|ref|ZP_02398999.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0193] gi|170688710|ref|ZP_02879915.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0465] gi|170709117|ref|ZP_02899544.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0389] gi|177653948|ref|ZP_02935989.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0174] gi|190567070|ref|ZP_03019986.1| Holliday junction DNA helicase RuvA [Bacillus anthracis Tsiankovskii-I] gi|196034433|ref|ZP_03101842.1| Holliday junction DNA helicase RuvA [Bacillus cereus W] gi|196039270|ref|ZP_03106576.1| Holliday junction DNA helicase RuvA [Bacillus cereus NVH0597-99] gi|196044806|ref|ZP_03112040.1| Holliday junction DNA helicase RuvA [Bacillus cereus 03BB108] gi|206976012|ref|ZP_03236922.1| Holliday junction DNA helicase RuvA [Bacillus cereus H3081.97] gi|217961912|ref|YP_002340482.1| Holliday junction DNA helicase RuvA [Bacillus cereus AH187] gi|225866402|ref|YP_002751780.1| Holliday junction DNA helicase RuvA [Bacillus cereus 03BB102] gi|227817199|ref|YP_002817208.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. CDC 684] gi|229141160|ref|ZP_04269701.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus BDRD-ST26] gi|229602821|ref|YP_002868707.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0248] gi|254684176|ref|ZP_05148036.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. CNEVA-9066] gi|254724653|ref|ZP_05186436.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A1055] gi|254736523|ref|ZP_05194229.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. Western North America USA6153] gi|254741561|ref|ZP_05199248.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. Kruger B] gi|254751340|ref|ZP_05203377.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. Vollum] gi|254757672|ref|ZP_05209699.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. Australia 94] gi|301055929|ref|YP_003794140.1| holliday junction DNA helicase motor protein [Bacillus anthracis CI] gi|33301601|sp|Q81LG8|RUVA_BACAN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|81394735|sp|Q6HDA5|RUVA_BACHK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|81409055|sp|Q730B1|RUVA_BACC1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|81686087|sp|Q634C3|RUVA_BACCZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230517|sp|A0RJ27|RUVA_BACAH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226725435|sp|B7HQI0|RUVA_BACC7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254766941|sp|C3P9A8|RUVA_BACAA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254766942|sp|C3L6V0|RUVA_BACAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254766943|sp|C1ESW5|RUVA_BACC3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|30259149|gb|AAP28354.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. Ames] gi|42739481|gb|AAS43407.1| Holliday junction DNA helicase RuvA [Bacillus cereus ATCC 10987] gi|47552021|gb|AAT33773.2| Holliday junction DNA helicase RuvA [Bacillus anthracis str. 'Ames Ancestor'] gi|47556641|gb|EAL14973.1| Holliday junction DNA helicase RuvA [Bacillus cereus G9241] gi|49181238|gb|AAT56614.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. Sterne] gi|49333064|gb|AAT63710.1| holliday junction DNA helicase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974554|gb|AAU16104.1| Holliday junction DNA helicase, subunit A [Bacillus cereus E33L] gi|118418801|gb|ABK87220.1| Holliday junction DNA helicase subunit RuvA [Bacillus thuringiensis str. Al Hakam] gi|164712277|gb|EDR17813.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0488] gi|167511311|gb|EDR86697.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0193] gi|167528407|gb|EDR91175.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0442] gi|170125969|gb|EDS94869.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0389] gi|170667396|gb|EDT18154.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0465] gi|172081003|gb|EDT66081.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0174] gi|190562061|gb|EDV16030.1| Holliday junction DNA helicase RuvA [Bacillus anthracis Tsiankovskii-I] gi|195992975|gb|EDX56934.1| Holliday junction DNA helicase RuvA [Bacillus cereus W] gi|196024294|gb|EDX62967.1| Holliday junction DNA helicase RuvA [Bacillus cereus 03BB108] gi|196029897|gb|EDX68498.1| Holliday junction DNA helicase RuvA [Bacillus cereus NVH0597-99] gi|206745764|gb|EDZ57161.1| Holliday junction DNA helicase RuvA [Bacillus cereus H3081.97] gi|217066649|gb|ACJ80899.1| Holliday junction DNA helicase RuvA [Bacillus cereus AH187] gi|225789206|gb|ACO29423.1| Holliday junction DNA helicase RuvA [Bacillus cereus 03BB102] gi|227004034|gb|ACP13777.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. CDC 684] gi|228642323|gb|EEK98613.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus BDRD-ST26] gi|229267229|gb|ACQ48866.1| Holliday junction DNA helicase RuvA [Bacillus anthracis str. A0248] gi|300378098|gb|ADK07002.1| holliday junction DNA helicase motor protein [Bacillus cereus biovar anthracis str. CI] gi|324328324|gb|ADY23584.1| Holliday junction DNA helicase RuvA [Bacillus thuringiensis serovar finitimus YBT-020] Length = 205 Score = 156 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 96/205 (46%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G +E + +YV+ID G+ Y I+ P + ++ ++R+D + L Sbjct: 1 MFEYVTGYVEYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMAL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+G + A+ +L+ ++V++I ++ K + + PG+ K Sbjct: 59 YGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK + D+ + + A+ AL LGY + + + Sbjct: 119 ARQMILDLKGKLADVVPDAFVDLFSDEERFDEKKGSSAELDEALEALRALGYAEREVSRV 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +LK+ Q I+ AL + Sbjct: 179 VPELLKE---SLTTDQYIKKALSLL 200 >gi|218905615|ref|YP_002453449.1| Holliday junction DNA helicase RuvA [Bacillus cereus AH820] gi|218536299|gb|ACK88697.1| Holliday junction DNA helicase RuvA [Bacillus cereus AH820] Length = 541 Score = 156 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 96/205 (46%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G +E + +YV+ID G+ Y I+ P + ++ ++R+D + L Sbjct: 1 MFEYVTGYVEYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMAL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+G + A+ +L+ ++V++I ++ K + + PG+ K Sbjct: 59 YGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK + D+ + + A+ AL LGY + + + Sbjct: 119 ARQMILDLKGKLADVVPDAFVDLFSDEERFDEKKGSSAELDEALEALRALGYAEREVSRV 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +LK+ Q I+ AL + Sbjct: 179 VPELLKE---SLTTDQYIKKALSLL 200 >gi|327194147|gb|EGE61017.1| holliday junction DNA helicase protein [Rhizobium etli CNPAF512] Length = 204 Score = 156 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 94/206 (45%), Positives = 144/206 (69%), Gaps = 3/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + EDYVL+DV GVCY+ +C RTLS LG G+ C LF+ET++R+DQ++L Sbjct: 1 MIGKLKGTIDEIGEDYVLVDVHGVCYVAHCSARTLSKLGSAGEACVLFIETYVREDQLKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF++ L+R+WF LLQSVQGVGA+VA+ VLS +T EL +I LQ+ +++ PG+ K+ Sbjct: 61 FGFMTALEREWFNLLQSVQGVGAKVALAVLSTLTPGELANAIALQDRAAVSRAPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++TELK +A + + + ++ K++ + +A+SAL NLGY +DQA A Sbjct: 121 AMRLVTELKNRAPAFAG---EAINIALKQELGEGVAAAPVADAVSALTNLGYSRDQAANA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + +K + AD +++IRL L+ ++ Sbjct: 178 VAAAMKTAGDGADSAKLIRLGLKELA 203 >gi|149915610|ref|ZP_01904136.1| Holliday junction DNA helicase motor protein [Roseobacter sp. AzwK-3b] gi|149810502|gb|EDM70345.1| Holliday junction DNA helicase motor protein [Roseobacter sp. AzwK-3b] Length = 223 Score = 156 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 69/221 (31%), Positives = 113/221 (51%), Gaps = 16/221 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G I+ D+VLIDV+GV Y++YC RTL L ++G+ L+ + +R+D ++L Sbjct: 1 MIGRIAGRIDYRASDHVLIDVRGVGYLVYCSDRTLQSLPRVGEHTALYTDLVVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++W LL SVQGVGA+ ++ +L + + +I L + + GI K Sbjct: 61 FGFPTLIEKEWHRLLMSVQGVGAKASLAILGALGPDGVGRAIALGDWNAVKAARGIGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM---------------PSFAINAIS 165 A R++ ELK K L ++ + + A+S Sbjct: 121 AQRVVNELKDKLPELMAMGTTPTASAPAPPSDAEDAVIEPASLAAAPPPPRSDAQAEALS 180 Query: 166 ALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 AL NLGY +A AV + + A+ + +IR ALR ++ Sbjct: 181 ALTNLGYAPGEAARAVAQAAESDPQ-AETAAMIRAALRLLA 220 >gi|23099492|ref|NP_692958.1| holliday junction DNA helicase [Oceanobacillus iheyensis HTE831] gi|33301656|sp|Q8EPQ5|RUVA_OCEIH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|22777721|dbj|BAC13993.1| holliday junction DNA helicase [Oceanobacillus iheyensis HTE831] Length = 201 Score = 156 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 54/206 (26%), Positives = 97/206 (47%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + L ++ +++DV G+ Y I CP + + H+R+D L Sbjct: 1 MIAYIKGTLNSLGDESLIVDVGGIGYEIVCP-NPFVFQDLLNQQIHIQTYHHVREDAQIL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++ F L SV G+G + A+ +L+ + + + ++ ++ K + PG+ K Sbjct: 60 FGFQNRDEKYLFTKLISVSGIGPKGALAILAGVDISGFIAAVENEDDKFLTSFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK S+ S+ + K + A+ AL LGY + Sbjct: 120 ARQIILDLKGKLTSVFSITDE----QQKSSVSNVNNNEVYSEAMEALKALGYTDKEVKQV 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + LKK+ + + IR AL ++ Sbjct: 176 LPH-LKKDNDALSVDEAIRKALALLA 200 >gi|261405408|ref|YP_003241649.1| Holliday junction DNA helicase RuvA [Paenibacillus sp. Y412MC10] gi|261281871|gb|ACX63842.1| Holliday junction DNA helicase RuvA [Paenibacillus sp. Y412MC10] Length = 205 Score = 156 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + L +Y+++DVQGV Y ++CP K T+F H+R+D I L Sbjct: 1 MIDFLRGQVVHLESEYIVLDVQGVGYRVFCPNP--YAFAKTEGTVTVFTHHHVREDAILL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++ F L V G+G RVA+G+L + +V +I +N + ++PGI K Sbjct: 59 FGFPTREEQKLFRKLIEVSGIGPRVALGILGGGSPDHVVSAIYQENISFLIKLPGIGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K ++ S A L LGY + Sbjct: 119 AQRMILDLKDKLEGF-GNASMMTGLFAIQEPEADDGGSAWSEAREGLKALGYTDSELDKV 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + +++ AL+ + Sbjct: 178 WLKIKDSGASGESVDVLMKRALQQL 202 >gi|15892454|ref|NP_360168.1| Holliday junction DNA helicase motor protein [Rickettsia conorii str. Malish 7] gi|20140118|sp|Q92I89|RUVA_RICCN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|15619609|gb|AAL03069.1| holliday junction DNA helicase RuvA [Rickettsia conorii str. Malish 7] Length = 203 Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 71/203 (34%), Positives = 121/203 (59%), Gaps = 6/203 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G ++ +DYV+IDV GV Y++Y +TL L + G+F LF+ETH+R++ I L Sbjct: 1 MIGQLSGKVDSQGDDYVIIDVNGVGYLVYASGKTLGKLAE-GEFYKLFIETHVREEHIHL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ +F LLQSV G+G R+A+ +LS +T +++ ++ ++ + I G+ K+ Sbjct: 60 YGFLTLEEKIFFNLLQSVNGIGTRMALFILSSLTPSDIQIAVNNEDKNIFKAISGVGAKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELKGK +SS +N + + I ALVNLG+ + +A A Sbjct: 120 AERIVLELKGKVAKISSGSAIIKESLNIKNITPVASN----EVIKALVNLGFSRFEAQNA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V ++ + I ++I+ AL+ Sbjct: 176 VQGIITQNPEI-SIDELIKTALK 197 >gi|302391487|ref|YP_003827307.1| Holliday junction DNA helicase RuvA [Acetohalobium arabaticum DSM 5501] gi|302203564|gb|ADL12242.1| Holliday junction DNA helicase RuvA [Acetohalobium arabaticum DSM 5501] Length = 201 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 59/204 (28%), Positives = 101/204 (49%), Gaps = 8/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + E ++IDVQGV Y + P + L IG+ ++ T++R+D+ L Sbjct: 1 MIAHLTGELVLKEEARIVIDVQGVGYEVMIPTSVQNRLPNIGEDIKVYTHTYVREDRFVL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + + F L V VG +VA+ +LS + A E ++ ++ +V+ ++ GI K Sbjct: 61 YGFLQLSELELFGKLLKVSKVGPKVAVSILSTLNAREFKLAVAKEDIEVLKEVKGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+KGK + +++ S A+ L+NLGY +A A Sbjct: 121 AQRLILEMKGKIDLDRIMEEEESS--------QSVDGIEREEAVEGLMNLGYNIQEAREA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V K A ++I+LAL+ Sbjct: 173 VTEACKGVDEAAGVEEVIKLALQK 196 >gi|157828405|ref|YP_001494647.1| Holliday junction DNA helicase RuvA [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933115|ref|YP_001649904.1| Holliday junction DNA helicase RuvA [Rickettsia rickettsii str. Iowa] gi|166200256|sp|A8GRW4|RUVA_RICRS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189045764|sp|B0BXC2|RUVA_RICRO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|157800886|gb|ABV76139.1| Holliday junction DNA helicase motor protein [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908202|gb|ABY72498.1| Holliday junction DNA helicase [Rickettsia rickettsii str. Iowa] Length = 204 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 72/203 (35%), Positives = 121/203 (59%), Gaps = 6/203 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ +DYV+IDV GV Y++Y +TL L + G+F LF+ETH+R++ I L Sbjct: 1 MIGKLSGKVDSQGDDYVIIDVNGVGYLVYASGKTLGTLAE-GEFYKLFIETHVREEHIHL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ +F LLQSV G+G R+A+ +LS +T +++ ++ ++ + I G+ K+ Sbjct: 60 YGFLTLEEKIFFNLLQSVNGIGTRMALFILSSLTPSDIQIAVNNEDKNIFKAISGVGAKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELKGK +SS +N + + I ALVNLG+ + +A A Sbjct: 120 AERIVLELKGKVAKISSGSAIIKESLNIKNITPVASN----EVIKALVNLGFSRFEAQNA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V ++ + I ++I+ AL+ Sbjct: 176 VQGIITQNPEI-SIDELIKTALK 197 >gi|329926780|ref|ZP_08281188.1| Holliday junction DNA helicase RuvA [Paenibacillus sp. HGF5] gi|328938980|gb|EGG35348.1| Holliday junction DNA helicase RuvA [Paenibacillus sp. HGF5] Length = 205 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + L +Y+++DVQGV Y ++CP K T+F H+R+D I L Sbjct: 1 MIDFLRGQVVHLESEYIVLDVQGVGYRVFCPNP--YAFAKTEGTVTVFTHHHVREDAILL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++ F L V G+G RVA+G+L + +V +I +N + ++PGI K Sbjct: 59 FGFPTREEQKLFRKLIEVSGIGPRVALGILGGGSPDHVVSAIYQENISFLIKLPGIGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K ++ S A L LGY + Sbjct: 119 AQRMILDLKDKLEGF-GNASMMTGLFAIQEPESDDGGSAWSEAREGLKALGYTDSELDKV 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + +++ AL+ + Sbjct: 178 WLKIKDSGASGESVDVLMKRALQQL 202 >gi|116253728|ref|YP_769566.1| Holliday junction DNA helicase RuvA [Rhizobium leguminosarum bv. viciae 3841] gi|122988385|sp|Q1MC53|RUVA_RHIL3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|115258376|emb|CAK09479.1| putative Holliday junction DNA helicase [Rhizobium leguminosarum bv. viciae 3841] Length = 204 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 92/206 (44%), Positives = 142/206 (68%), Gaps = 3/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + EDYVL+DV GVCY+ +C RTLS LG G+ C LF+ET++R+DQ++L Sbjct: 1 MIGKLKGTIDEIGEDYVLVDVHGVCYVAHCSARTLSKLGSTGEACVLFIETYVREDQLKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF++ L+R+WF LLQSVQGVGA+VA+ VLS + EL +I LQ+ +++ PG+ K+ Sbjct: 61 FGFMTALEREWFNLLQSVQGVGAKVALAVLSTLPPGELANAIALQDRTAVSRAPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++TELK +A + + + ++ K++ + +A+SAL NLGY +DQA A Sbjct: 121 AMRLVTELKNRAPAFAG---EAINIGLKQELGEGVAAAPVADAVSALTNLGYSRDQAANA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + +K AD +++IRL L+ ++ Sbjct: 178 IAAAMKTAGEGADSAKLIRLGLKELA 203 >gi|291280036|ref|YP_003496871.1| Holliday junction DNA helicase RuvA [Deferribacter desulfuricans SSM1] gi|290754738|dbj|BAI81115.1| Holliday junction DNA helicase RuvA [Deferribacter desulfuricans SSM1] Length = 191 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 102/205 (49%), Gaps = 16/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G + ++++++ G+ Y I + T S L + G +FV+ +++D I L Sbjct: 1 MINYINGKLVFKKPEFIVLETFGIGYHINISLNTFSKLPEEGANLKIFVQQIVKEDSITL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++++F LL V VG ++A+ +LS EL E I+ +N +A IPGI K Sbjct: 61 YGFFDEAEKEFFNLLIKVSKVGPKLALSILSGFNVDELKECIVSKNHIKLASIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K ++ V + + +SAL+NLGY + + Sbjct: 121 AERIVLELKDKLDNVEVVSEDG-------------DVQILEDVVSALINLGYKKQECLKV 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ + + I++ AL+ + Sbjct: 168 IKNI---DISKLRFEDILKEALKKL 189 >gi|326622940|gb|EGE29285.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 187 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 49/187 (26%), Positives = 88/187 (47%), Gaps = 3/187 (1%) Query: 18 LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQS 77 L++ GV Y ++ P+ L + G +F +R+D L+GF + +R F L Sbjct: 2 LLETGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIK 61 Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137 GVG ++A+ +LS ++A + V ++ + + ++PGI K A R++ E+K + L Sbjct: 62 TNGVGPKLALAILSGMSAQQFVNAVEREELGALVKLPGIGKKTAERLIVEMKDRFKGLHG 121 Query: 138 VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQI 197 + + + A++ALV LGY +A+ V + + A + Sbjct: 122 DLFTPAVDLVLTSPASPTSEDAEQEAVAALVALGYKPQEASRMVSKIAR---PDASSETL 178 Query: 198 IRLALRA 204 IR ALRA Sbjct: 179 IRDALRA 185 >gi|116620084|ref|YP_822240.1| Holliday junction DNA helicase RuvA [Candidatus Solibacter usitatus Ellin6076] gi|122255537|sp|Q02AG7|RUVA_SOLUE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|116223246|gb|ABJ81955.1| Holliday junction DNA helicase RuvA [Candidatus Solibacter usitatus Ellin6076] Length = 197 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 57/202 (28%), Positives = 101/202 (50%), Gaps = 9/202 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + + VL++ GV Y + P+ T + L +G L + TH+R+D + L Sbjct: 1 MIALLRGLVVEKHPNQVLVETGGVGYDVTIPVSTFTKLPDLGGEVRLRIYTHVREDVLAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ F L SV G+G +A+ +LS + A +L+ SI + + ++PG+ K Sbjct: 61 YGFLTQDEKALFEKLISVSGIGPTLAVKILSGLAAADLILSIRRGEVEKLVKVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K + + + ++ + +SAL+NLG + QA A Sbjct: 121 AERMVLELRDKLPAATGEEPGAPAAE--------ALSPIDQDVLSALLNLGCARPQAEAA 172 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 V K D + R AL Sbjct: 173 VRKA-KAAGASLDFEPLFRRAL 193 >gi|254424412|ref|ZP_05038130.1| Holliday junction DNA helicase RuvA [Synechococcus sp. PCC 7335] gi|196191901|gb|EDX86865.1| Holliday junction DNA helicase RuvA [Synechococcus sp. PCC 7335] Length = 207 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 61/213 (28%), Positives = 99/213 (46%), Gaps = 14/213 (6%) Query: 1 MIGKIKGNIEG--LYED---YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55 MIG +KG + + ++ GV Y + RTLS L ++G+ +F R+ Sbjct: 1 MIGYVKGILADSQKLPNGRVIATVEAGGVGYDMQVNPRTLSQLPQVGEPVRIFTHLQSRE 60 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 D LFGF S +R F LL SV G+G+++ M +L+ + EL++S++ N++V+ + PG Sbjct: 61 DLQMLFGFSSKAERDVFRLLISVSGIGSQMGMSLLNALGLNELIQSVVNGNARVLTRTPG 120 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 + K A RI+ ELK K S + + + LV LGY Sbjct: 121 VGNKTAERIILELKTKLSEWR-------SHSGIVAPTGGPISAVQEDVEMMLVALGYSNS 173 Query: 176 QATTAVVSVLK--KEKNIADDSQIIRLALRAIS 206 + + A+V+V D IR A+ +S Sbjct: 174 EISKALVAVGNGTALSKSDDVEDWIREAIAWLS 206 >gi|171060623|ref|YP_001792972.1| Holliday junction DNA helicase RuvA [Leptothrix cholodnii SP-6] gi|229560097|sp|B1Y8E1|RUVA_LEPCP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|170778068|gb|ACB36207.1| Holliday junction DNA helicase RuvA [Leptothrix cholodnii SP-6] Length = 191 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 94/205 (45%), Gaps = 16/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L+DV GV Y + P+ T L +G+ TL +R+D L Sbjct: 1 MIGRLTGTLAEKSPPQLLVDVGGVGYEVDVPMSTFYNLPVLGERVTLLTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L + GVGAR A+ +LS ++ +L +++ Q + + ++PGI K Sbjct: 61 YGFLTATERATFRQLLKISGVGARTALSILSGLSVADLAQAVSAQEAGRLVKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R + + + + + AL+ LGY + +A A Sbjct: 121 AER------------LLLELKGKLGPDLALPGAVIRNEAQSDIVQALIALGYNEREAAAA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + K S I+LALRA+ Sbjct: 169 I----KPLPADVGVSDGIKLALRAL 189 >gi|126725530|ref|ZP_01741372.1| Holliday junction DNA helicase motor protein [Rhodobacterales bacterium HTCC2150] gi|126704734|gb|EBA03825.1| Holliday junction DNA helicase motor protein [Rhodobacterales bacterium HTCC2150] Length = 221 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 80/219 (36%), Positives = 119/219 (54%), Gaps = 14/219 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGKI G + D+VLIDV+GV YI+YC RTLS L G +L+ E +R+D ++L Sbjct: 1 MIGKITGIQDMRGTDHVLIDVRGVGYIVYCSDRTLSALPGKGQAVSLYTELLVREDNLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++W LL SVQG+GA+ +M +L + A + +I L ++ I PG+ KI Sbjct: 61 FGFTTLFEKEWHKLLISVQGIGAKASMAILGTLGAEGVGRAITLGDATAIKAAPGVGPKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQ-------------DMSCVNKEQAHICSMPSFAINAISAL 167 A R++ ELK KA ++ ++ D+ ++A +A+SAL Sbjct: 121 AQRVVLELKNKAPAIMALGGSLDEATGSVAAEPDDILIEAPQKAKTSPDAVAQSDALSAL 180 Query: 168 VNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 NLGYG A AV V E AD +IR AL+ ++ Sbjct: 181 TNLGYGPSDAAMAVAEV-AGEMADADAGALIRAALQRLA 218 >gi|153003861|ref|YP_001378186.1| Holliday junction DNA helicase RuvA [Anaeromyxobacter sp. Fw109-5] gi|166229629|sp|A7H906|RUVA_ANADF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|152027434|gb|ABS25202.1| Holliday junction DNA helicase RuvA [Anaeromyxobacter sp. Fw109-5] Length = 197 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 100/205 (48%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + D+V++DV GV Y+++ +L+ L G TL + T++RQD I L Sbjct: 1 MIARLAGKVAEKGADHVVLDVGGVGYLVHLSAVSLAGLPPQGGDGTLRIFTNVRQDAIEL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ + F L V+GVG R A +LS I A EL +++ + + ++PGI K Sbjct: 61 YGFASEDEEAVFRALIDVKGVGPRAAQNILSGIDARELAQAVAGSDVARLTKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K L+ A ALVNLGY QA A Sbjct: 121 AERLVVELKEKLALLARAAGP---------ARAKPGAGVVEQLRQALVNLGYKPPQADAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 L+ E +++R AL+ + Sbjct: 172 -ADALRDEAEGKKLDELLREALKRL 195 >gi|94677012|ref|YP_588762.1| Holliday junction DNA helicase RuvA [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|123081488|sp|Q1LTF2|RUVA_BAUCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|94220162|gb|ABF14321.1| Holliday junction DNA helicase RuvA [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 196 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 56/203 (27%), Positives = 99/203 (48%), Gaps = 10/203 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I +L+++ G+ Y I P+ S L IG L+ +R+D L Sbjct: 1 MIGRLRGIILEKQPPLLLLEINGIGYEIAIPMNNFSLLPAIGQETILYTHCIVREDTELL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+ D F L + GVG ++A+ +L+ ++ + + +I ++ ++PG+ K Sbjct: 61 FGFIKKPDMILFRALIKINGVGPKLALAILAGMSEKQFLSAIEHNEIHMLTKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K K S + + + I AI+AL++LGY +A+ Sbjct: 121 AERLVIEMKDKLKGTSKSLFSLATIG-------EGLAKTEIEAITALISLGYTHQEASKM 173 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V V + A+ +IR ALR Sbjct: 174 VKKVAIE---GANCETLIRDALR 193 >gi|291513714|emb|CBK62924.1| Holliday junction DNA helicase subunit RuvA [Alistipes shahii WAL 8301] Length = 193 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 97/205 (47%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y +IDV GV Y ++ + T S + + L+V +R+D L Sbjct: 1 MYEYIKGTVAEVAPAYAVIDVGGVGYYLHISLETYSAI-EHETETRLYVHYVVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F LL SV GVG A +LS + EL I N+ ++ + G+ +K Sbjct: 60 YGFSTKAERELFRLLISVSGVGGNTARMILSTYSPRELQGIITAGNAVLLKNVKGLGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ EL GK M+ + A++AL LG+ + A Sbjct: 120 AQKIIVELSGKL----------MAPGADDGGAQPGAGGSFDEALAALSMLGFARAPAEKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VL++ A ++IR+AL+ + Sbjct: 170 LRGVLRESP-AAPVEELIRMALKKL 193 >gi|241206204|ref|YP_002977300.1| Holliday junction DNA helicase RuvA [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860094|gb|ACS57761.1| Holliday junction DNA helicase RuvA [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 204 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 94/206 (45%), Positives = 144/206 (69%), Gaps = 3/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + EDYVL+DV GVCY+ +C RTLS LG G+ C LF+ET++R+DQ++L Sbjct: 1 MIGKLKGTIDEIGEDYVLVDVHGVCYVAHCSARTLSKLGSAGEACVLFIETYVREDQLKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF++ L+R+WF LLQSVQGVGA+VA+ VLS +T EL +I LQ+ +++ PG+ K+ Sbjct: 61 FGFMTALEREWFNLLQSVQGVGAKVALAVLSTLTPGELANAIALQDRTAVSRAPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++TELK +A + + + ++ K++ + +A+SAL NLGY +DQA A Sbjct: 121 AMRLVTELKNRAPAFAG---EAINIALKQELGEGVAAAPVADAVSALTNLGYSRDQAANA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + +K + AD +++IRL L+ ++ Sbjct: 178 VAAAMKTAGDNADSAKLIRLGLKELA 203 >gi|330996011|ref|ZP_08319905.1| Holliday junction DNA helicase RuvA [Paraprevotella xylaniphila YIT 11841] gi|329574008|gb|EGG55586.1| Holliday junction DNA helicase RuvA [Paraprevotella xylaniphila YIT 11841] Length = 200 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 97/205 (47%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG I L ++D GV Y + + T S L + L+V +R+D L Sbjct: 1 MIEYVKGQIAELTPATAVVDCHGVGYGLNISLNTFSAL-QGKQEAKLYVYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F+LL SV G+G A +LS +T ELV I N K++ + GI +K Sbjct: 60 YGFSTRQERALFLLLISVSGIGGNTARMILSALTPAELVNVISSGNDKLLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K S+ A++AL LG+ + Sbjct: 120 AQRIIVDLKDKIASVEIEGTASPGTSATM---ATGHSEILEEAVAALTMLGFPPAPSQKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 +++LK+E A ++I+LAL+ + Sbjct: 177 ALAILKEEPEAA-VERVIKLALKRL 200 >gi|325954455|ref|YP_004238115.1| Holliday junction ATP-dependent DNA helicase ruvA [Weeksella virosa DSM 16922] gi|323437073|gb|ADX67537.1| Holliday junction ATP-dependent DNA helicase ruvA [Weeksella virosa DSM 16922] Length = 193 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + ++ Y ++D GV Y + + T S L I + TL+ + +R D L Sbjct: 1 MITQLRGRLVEVHPSYAVVDCNGVGYWVNISLNTYSSLV-IDEVITLYTQQIIRDDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L SV GVG AM +LS ++ E+ +I +++K++ + GI K Sbjct: 60 YGFNTIEERSIFQKLISVNGVGPASAMMMLSTLSPKEIQTAIYTEDAKLLQSVKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K ++ + NK I A+SAL LG + A Sbjct: 120 AQRIIIDLKDKLEEINLEDVNSLPHKNKT----------RIEALSALEVLGIPRKVAEKT 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VL K + A +++ L+ + Sbjct: 170 IDQVLDKNAD-ATVETLVKETLKKL 193 >gi|148555055|ref|YP_001262637.1| Holliday junction DNA helicase RuvA [Sphingomonas wittichii RW1] gi|166200267|sp|A5V883|RUVA_SPHWW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|148500245|gb|ABQ68499.1| Holliday junction DNA helicase RuvA [Sphingomonas wittichii RW1] Length = 199 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 72/206 (34%), Positives = 116/206 (56%), Gaps = 8/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + D+ ++DV GV Y+++C RTLS +G+ G LF E +R+D I L Sbjct: 1 MIARLRGVLAETSADHAVLDVGGVGYLVWCSARTLSAIGETGGDVLLFTEMQVREDAITL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F LL SVQGVG RVA+ +LS + A EL ++ + +IA+ G+ K+ Sbjct: 61 YGFGSAGERDSFRLLTSVQGVGGRVALAILSVLDAGELSRAVAGGDKAMIARANGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K ++ + K + +A+SAL NLG+ +A+ A Sbjct: 121 AMRIVNELKDKMGGVALGPGLGAAPAAK--------GGVSTDALSALANLGFRPAEASAA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + +++ + A ++RLALR + Sbjct: 173 VGAAIEELGDGATLDAVVRLALRKAA 198 >gi|189468525|ref|ZP_03017310.1| hypothetical protein BACINT_04928 [Bacteroides intestinalis DSM 17393] gi|189436789|gb|EDV05774.1| hypothetical protein BACINT_04928 [Bacteroides intestinalis DSM 17393] Length = 201 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 106/205 (51%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + L +ID G+ Y + + T + + + C L++ +R+D L Sbjct: 1 MIEYIRGGLAELSPATAVIDCNGLGYAVNISLNTYAAI-QGKKECKLYIYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F+LL SV G+G A +LS ++ ELV I +N+ ++ + GI +K Sbjct: 60 YGFADKQERELFLLLISVSGIGGNTARMILSALSPAELVNVISTENANLLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + ++ + + + + AI+AL LG+ Q + Sbjct: 120 AQRVIVDLKDKIKTGTASAGSTIGSLGGMLS--AANAQVQEEAIAALTMLGFAQAPSQKV 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+++LK E + A Q+I+LAL+ + Sbjct: 178 VLAILKDEPD-APVEQVIKLALKRL 201 >gi|28198789|ref|NP_779103.1| Holliday junction DNA helicase motor protein [Xylella fastidiosa Temecula1] gi|182681488|ref|YP_001829648.1| Holliday junction DNA helicase RuvA [Xylella fastidiosa M23] gi|32130012|sp|Q87D02|RUVA_XYLFT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560141|sp|B2I4S9|RUVA_XYLF2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|28056880|gb|AAO28752.1| holliday junction binding protein, DNA helicase [Xylella fastidiosa Temecula1] gi|182631598|gb|ACB92374.1| Holliday junction DNA helicase RuvA [Xylella fastidiosa M23] gi|307579942|gb|ADN63911.1| Holliday junction DNA helicase RuvA [Xylella fastidiosa subsp. fastidiosa GB514] Length = 194 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 53/203 (26%), Positives = 90/203 (44%), Gaps = 13/203 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + ++++DV GV Y + P+ T L +G LF + D L Sbjct: 1 MIGRLRGVLTSKTPPWLVVDVCGVGYELEVPMSTFCELPDVGYEVNLFTHYTQKDDSAAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS+ +R+ F LQ V G+G ++A+ +LS ++ I ++ + IPG+ K Sbjct: 61 YGFLSESERRLFRHLQRVSGIGTKIALAILSSVSVDTFAGLIQAGDANALTVIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ +A + N A AL LGY +A Sbjct: 121 AERMLVELRDRAADFN----------NGISTSGKLNLDTVSEAALALQQLGYKPAEAARM 170 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 D + +I+ AL+ Sbjct: 171 ARDA---GTESDDVAIVIKKALQ 190 >gi|254294768|ref|YP_003060791.1| Holliday junction DNA helicase RuvA [Hirschia baltica ATCC 49814] gi|254043299|gb|ACT60094.1| Holliday junction DNA helicase RuvA [Hirschia baltica ATCC 49814] Length = 209 Score = 155 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 72/208 (34%), Positives = 113/208 (54%), Gaps = 3/208 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++KG + + LIDV GV Y+++C RTL+ L IG T+FVET M ++ I+L Sbjct: 1 MIARLKGIVAATGDGQALIDVNGVGYVLFCGGRTLARL-TIGRENTVFVETQMSENAIKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + DR WF LQ GVGA+ A+ +L +T +L+++I+L ++ + + G+ K+ Sbjct: 60 YGFETAEDRAWFSRLQDAPGVGAKAALNILDALTPAQLMDAIVLGDAASVQRAHGVGKKL 119 Query: 121 ASRIMTELKGKAI--SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R+++E K K L SV V + + A SAL NLGY A Sbjct: 120 AERVVSEFKDKPPPAGLFSVSFAPSEGVEGLASTSTASTGSRAAAASALTNLGYQNVDAQ 179 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 AV K+ A + +I+ AL+A++ Sbjct: 180 RAVAVAAKELGEDASEGALIKAALKALA 207 >gi|91789933|ref|YP_550885.1| Holliday junction DNA helicase RuvA [Polaromonas sp. JS666] gi|123164397|sp|Q124Q5|RUVA_POLSJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|91699158|gb|ABE45987.1| Holliday junction DNA helicase RuvA [Polaromonas sp. JS666] Length = 190 Score = 155 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 93/206 (45%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + VL+D GV Y + P+ T L +G+ +L +R+D L Sbjct: 1 MIGRISGQLAEKNPPEVLVDCNGVGYEVLVPMSTFYNLPGLGEKVSLLTHFVVREDAQIL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L + GVG R A+ VLS ++ EL +++ Q + I ++PGI K Sbjct: 61 YGFGSATERAAFRQLIKISGVGPRTALSVLSGMSVEELAQAVTHQEAGRIIKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R +++ + + + ALV LGY A A Sbjct: 121 AER-------------LLLELKGKLGADIGVQVSVSSDSQSDILQALVALGYSDRDAALA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + ++ K S I+LAL+A++ Sbjct: 168 LKALPKDIG----VSDGIKLALKALA 189 >gi|332878042|ref|ZP_08445772.1| Holliday junction DNA helicase RuvA [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684004|gb|EGJ56871.1| Holliday junction DNA helicase RuvA [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 200 Score = 155 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 100/205 (48%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG I L +ID GV Y + + T S L + L+V +R+D L Sbjct: 1 MIEYVKGQIAELTPAIAVIDCHGVGYGLNISLNTFSAL-QGKQEAKLYVYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F+LL SV G+G A +LS +T ELV I N K++ + GI +K Sbjct: 60 YGFSTRQERALFLLLISVSGIGGNTARMILSALTPAELVNVISSGNDKLLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K +SV + + A++AL LG+ + Sbjct: 120 AQRIIVDLKDKI---ASVEIEGTAAPGTSATAATGHSEILEEAVAALTMLGFPPAPSQKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 +++LK+E A ++I+LAL+ + Sbjct: 177 ALAILKEEPEAA-VERVIKLALKRL 200 >gi|198277641|ref|ZP_03210172.1| hypothetical protein BACPLE_03864 [Bacteroides plebeius DSM 17135] gi|198269338|gb|EDY93608.1| hypothetical protein BACPLE_03864 [Bacteroides plebeius DSM 17135] Length = 198 Score = 155 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 102/205 (49%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + +V+++ G+ Y I + T S + + L++ +R+D L Sbjct: 1 MIEYIKGELVDATPAWVVVECNGLGYGINVSLNTYSAV-QGKKEVKLYIYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F+LL SV G+G A +LS ++ +EL I N K++ + GI +K Sbjct: 60 YGFATRQERELFLLLISVSGIGGNTARMILSALSPSELCNVIGSGNDKLLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K V S + + + A++AL LG+ Q + Sbjct: 120 AQRIIVELKDKI-----AVTGIESAATVKSVAVAANTEIYEEAVAALTMLGFAQAPSQKV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 +LK+E + A ++I+LAL+ + Sbjct: 175 TAQILKEEPD-APVEKVIKLALKRL 198 >gi|21673101|ref|NP_661166.1| Holliday junction DNA helicase RuvA [Chlorobium tepidum TLS] gi|25453273|sp|Q8KFR0|RUVA_CHLTE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|21646174|gb|AAM71508.1| Holliday junction DNA helicase RuvA [Chlorobium tepidum TLS] Length = 201 Score = 155 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 54/202 (26%), Positives = 103/202 (50%), Gaps = 8/202 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G + + + +++V G+ Y+++ T L G LF ++R+D +L Sbjct: 1 MFAFLRGELVTVSREEAVVEVSGIGYLLHISSGTSRRLPPEGSQVRLFTHHYVREDAQQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL + + Q F LL ++ GVG ++AM VLS ++ E+ E+I+ + + I G+ K Sbjct: 61 FGFLDEEELQLFRLLLTIGGVGPKLAMAVLSGLSVGEIQEAIVANRPETLYGITGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ EL+ K + + + + A +A++AL+ LG+ + A A Sbjct: 121 ASRIILELRDKILKIQP-------AASGKTAGAPQALQLNEDALAALMTLGFPKPAAQKA 173 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 + +L+ + +++R AL Sbjct: 174 ISGILETSPGL-SVEEVVRAAL 194 >gi|114771193|ref|ZP_01448613.1| Holliday junction DNA helicase motor protein [alpha proteobacterium HTCC2255] gi|114548118|gb|EAU51005.1| Holliday junction DNA helicase motor protein [alpha proteobacterium HTCC2255] Length = 225 Score = 155 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 120/222 (54%), Gaps = 17/222 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGKI G ++ D+VL+DVQGV Y++YC RTLS L G L+ + +R+D ++L Sbjct: 1 MIGKITGRVDYRGTDHVLVDVQGVGYMVYCSERTLSGLPSRGGIVALYTDLLVREDNLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + D++W LL +VQGVGA+ A+ + S + + ++I L + I GI KI Sbjct: 61 FGFTTLADKEWHKLLTTVQGVGAKAALAIASTLGTDGVSKAIALGDVNAIKSAQGIGPKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI----------------CSMPSFAINAI 164 A R++TELK KA + ++ + + V +++ + S S +A+ Sbjct: 121 AQRVITELKDKAPKIMAMGGEGSAVVEADESMVIDVQTPVDTPVKNQNRKSEASAQADAL 180 Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 SAL+NLGY A A+ V + + II+ AL+ ++ Sbjct: 181 SALINLGYAHGDAAGAIAQVTSEIPSSISTE-IIKAALKLLA 221 >gi|332968271|gb|EGK07345.1| crossover junction ATP-dependent DNA helicase RuvA [Kingella kingae ATCC 23330] Length = 188 Score = 155 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 55/197 (27%), Positives = 93/197 (47%), Gaps = 12/197 (6%) Query: 9 IEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLD 68 + ++IDV GV Y + ++T L +G+ L+ +R+D LFGF + Sbjct: 2 LLEKMPPQIVIDVNGVGYELDVSMQTFYALPALGETVQLYTYLVVREDAHLLFGFGDASE 61 Query: 69 RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 R F L V G+GA+ A+G+LS +T EL ++I ++ K ++ PGI K A R++ EL Sbjct: 62 RTTFRQLIKVSGIGAKTALGILSAMTTDELAQAIANEDVKRLSSAPGIGKKTAERMILEL 121 Query: 129 KGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKE 188 +GK + + + +S L+ LGY + +A A K Sbjct: 122 RGKL--------AHRGLGDLALFTPAADTDNRADVVSTLLALGYSEREAQAA----CKSL 169 Query: 189 KNIADDSQIIRLALRAI 205 N + + +RLAL+ + Sbjct: 170 PNGVEVGEGVRLALKQL 186 >gi|83954484|ref|ZP_00963195.1| Holliday junction DNA helicase motor protein [Sulfitobacter sp. NAS-14.1] gi|83840768|gb|EAP79939.1| Holliday junction DNA helicase motor protein [Sulfitobacter sp. NAS-14.1] Length = 222 Score = 155 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 71/220 (32%), Positives = 115/220 (52%), Gaps = 15/220 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGKI G I+ D++LIDV+GV Y++YC RT++ L +G+ LF + +R+D ++L Sbjct: 1 MIGKITGRIDYRAPDHLLIDVRGVGYLVYCSDRTMAALPGVGEVVALFTDLVVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++W LL SVQGVGA+ ++ +L + + +I L + + G+ KI Sbjct: 61 FGFQTLAEKEWHRLLTSVQGVGAKASLAILGALGPDGVSRAIALGDWNAVKVAKGVGPKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAH--------------ICSMPSFAINAISA 166 A R++ +LK KA + ++ + +A S A+SA Sbjct: 121 AQRVVLDLKDKAPGVMAMTGSLAEAHGEVEAAAEVIETAAPKRRPVAPPNQSAQAEALSA 180 Query: 167 LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 L NLGYG A AV + A+ Q+IR AL+ ++ Sbjct: 181 LGNLGYGPGDAAGAVAQAAGEMPE-AETPQLIRAALKLLA 219 >gi|260587811|ref|ZP_05853724.1| holliday junction DNA helicase RuvA [Blautia hansenii DSM 20583] gi|331083813|ref|ZP_08332922.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium 6_1_63FAA] gi|260542076|gb|EEX22645.1| holliday junction DNA helicase RuvA [Blautia hansenii DSM 20583] gi|330403238|gb|EGG82798.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium 6_1_63FAA] Length = 203 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 103/205 (50%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG I + ED V+++ + Y ++ P+ + + + GD ++ ++R+D ++L Sbjct: 1 MIAYLKGEIVEILEDRVILEAGNIGYNLFMPMAGVDGVLRTGDETKIYTYLNVREDAMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ D F LL V G+G + A+GVLS ++A EL +++ + K I++ PGI K Sbjct: 61 YGFLTKDDLNVFKLLLGVNGIGPKAALGVLSGLSADELRFAVLADDVKTISKAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK K SL V + + + A+ AL LGY A A Sbjct: 121 AQKLILELKDKM-SLQEAFDLKSEHVQESAGSLSDVSDIKKEAVEALTALGYSGADALRA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + +++ AL+ + Sbjct: 180 VKH--TEITEGMSVEDLLKQALKNM 202 >gi|262341131|ref|YP_003283986.1| Holliday junction DNA helicase RuvA [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272468|gb|ACY40376.1| Holliday junction DNA helicase RuvA [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 196 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 54/206 (26%), Positives = 97/206 (47%), Gaps = 11/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI ++G + + Y++ID GV Y I+ + T S L + G + ++ +Q Sbjct: 1 MITHLRGKLIEKNQSYLIIDCHGVGYHIHISLYTHSSLLEEEGKDICIHTYLFIKDNQHV 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF ++R+ F L SV G+G A+ +LS +T E+ +SI ++ K ++ GI K Sbjct: 61 LYGFFDKIERKIFSYLISVNGIGPSSAIMLLSSLTPYEIEKSISKEDIKAFDKVKGIGTK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ ELK K K+ + + S A+SAL LG+ ++ Sbjct: 121 TAQRIIIELKDKFTK---------EIFYKKVKNENTPYSIKKEALSALSVLGFSTKESKK 171 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + +L + +I+ +L+ + Sbjct: 172 ILDDILNEHPEF-SVENLIKESLKKL 196 >gi|172040615|ref|YP_001800329.1| Holliday junction DNA helicase RuvA [Corynebacterium urealyticum DSM 7109] gi|229560025|sp|B1VDJ7|RUVA_CORU7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|171851919|emb|CAQ04895.1| ruvA [Corynebacterium urealyticum DSM 7109] Length = 206 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 108/206 (52%), Gaps = 4/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G++ DYV+I+ GV Y TL+ L + G+ + +R D L Sbjct: 1 MISSLRGDVIDKGLDYVVIECGGVGYRCLATGDTLATL-RRGESAFVLTSLVIRDDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 + F + R+ F +LQ V GVGAR+AMGV+S + ++ ++ + K + Q PG+ ++ Sbjct: 60 YAFSTSEQRETFGILQKVSGVGARLAMGVMSVLQPADIARAVEEGDIKTLQQAPGVGKRL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ +LKGK +L + Q + A + + + ALV LG+ + +A TA Sbjct: 120 AERMAVDLKGKFPALEATSGQ---ATIGDIAATGNDTALQSQVVEALVGLGFTEAKAATA 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V +L+++ D S ++R AL+ +S Sbjct: 177 VKKILEEQNGTTDPSSVLREALQRLS 202 >gi|85703560|ref|ZP_01034664.1| Holliday junction DNA helicase motor protein [Roseovarius sp. 217] gi|85672488|gb|EAQ27345.1| Holliday junction DNA helicase motor protein [Roseovarius sp. 217] Length = 219 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 72/217 (33%), Positives = 115/217 (52%), Gaps = 12/217 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G I+ D+VLIDV+GV Y++YC RTLS L +G L+ + +R+D ++L Sbjct: 1 MIGRIAGRIDYRGTDHVLIDVRGVGYLVYCSERTLSALPGVGGMAALYTDLLVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++W LL SVQGVGA+ ++ +L + + +I + + + GI K Sbjct: 61 FGFPTLVEKEWHRLLMSVQGVGAKASLAILGALGPEGVGRAIAIGDWHSVTAAKGIGAKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQ-----------AHICSMPSFAINAISALVN 169 A R++ ELK KA + ++ + + H + P A+SAL N Sbjct: 121 AQRVVNELKDKAPLIMAMGAAPPPAQDAGEVIETGPIQIAPVHAPTDPGAQAEALSALTN 180 Query: 170 LGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 LGY +A AV V + A + +IR ALR ++ Sbjct: 181 LGYSPGEAAGAVAQVAGEMPEAA-TADLIRAALRRLA 216 >gi|163942171|ref|YP_001647055.1| Holliday junction DNA helicase motor protein [Bacillus weihenstephanensis KBAB4] gi|229560002|sp|A9VIP7|RUVA_BACWK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|163864368|gb|ABY45427.1| Holliday junction DNA helicase RuvA [Bacillus weihenstephanensis KBAB4] Length = 205 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 95/205 (46%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G +E + +YV+ID G+ Y I+ P + ++ ++R+D + L Sbjct: 1 MFEYVTGYVEYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMAL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+G + A+ +L+ ++V++I ++ K + + PG+ K Sbjct: 59 YGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK + D+ + A+ AL LGY + + + Sbjct: 119 ARQMILDLKGKLADVVPDAFVDLFSDTESFDTKKGSSVELDEALEALRALGYAEREVSRV 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +LK+ Q I+ AL + Sbjct: 179 VPELLKE---SLTTDQYIKKALSLL 200 >gi|110801789|ref|YP_699225.1| Holliday junction DNA helicase RuvA [Clostridium perfringens SM101] gi|122956588|sp|Q0SRN2|RUVA_CLOPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|110682290|gb|ABG85660.1| Holliday junction DNA helicase RuvA [Clostridium perfringens SM101] Length = 201 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 106/205 (51%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I+G +G+ +DYV+I++ + Y I+ T+S + K+GD L++E +R+D I L Sbjct: 1 MYEYIRGQFQGISKDYVVIELNNIGYRIFTSGNTMSNMPKVGDEVLLYLEQIVREDFIGL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + + F LL S+ GVGA+ A+ +LS T L +I++ + K I + PGI K Sbjct: 61 YGFTTKEELEMFKLLLSINGVGAKAALSLLSISTVNNLKYAIMMGDEKHITRAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K +++ S +SAL+ LGY + +A A Sbjct: 121 AQRIILELKDKLKPDELTSEEEQLIEGINDNSDYSFN--INETLSALMALGYTEKEAQKA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + V K +I+ +L+ + Sbjct: 179 LEKVDKTL----SIENMIKESLKLL 199 >gi|269797654|ref|YP_003311554.1| Holliday junction DNA helicase RuvA [Veillonella parvula DSM 2008] gi|269094283|gb|ACZ24274.1| Holliday junction DNA helicase RuvA [Veillonella parvula DSM 2008] Length = 202 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 110/205 (53%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + L+++ +DV GV Y +Y P T L + G TLF ++R+D ++L Sbjct: 1 MIGYVRGIVTHLFKESCYVDVHGVGYRVYVPTTTRQQLTE-GHEATLFTYLNVREDAMQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ + + F+LL SV G+G +V +G+LS +T +II + + ++PGI K Sbjct: 60 YGFWTEEEYELFILLISVSGIGPKVGLGILSGMTPEAFKLAIINGQVQQLTKLPGIGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K ++ + + + + A AI ALV+LGY + Sbjct: 120 AERLVLELKDKIAKMTHISAESPAAIQPIGVTA---SGAAGEAIEALVSLGYSERDVADI 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V S+ + D S++I+++L + Sbjct: 177 VESL---DDGKRDVSELIKVSLIEL 198 >gi|329903093|ref|ZP_08273367.1| Holliday junction DNA helicase RuvA [Oxalobacteraceae bacterium IMCC9480] gi|327548502|gb|EGF33171.1| Holliday junction DNA helicase RuvA [Oxalobacteraceae bacterium IMCC9480] Length = 192 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 105/206 (50%), Gaps = 16/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L+D GV Y + + T L +G+ L + +R+D L Sbjct: 1 MIGRLSGTLLEKNPPQLLVDCHGVGYEVGVSMSTFYNLPALGEKIVLLTQQIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L + GVG R+A+ +LS ++ EL ++I LQ + + ++PG+ K Sbjct: 61 FGFGTAEERNVFRQLIKIAGVGPRMALAILSGMSVAELAQAITLQETGRLTKVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + +V ++P + + ++AL+ LGY +A A Sbjct: 121 AERLLLELKGKLGADLGIVGG------------VALPDGSGDILNALLALGYSDKEAMLA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + V + S I+LAL+A+S Sbjct: 169 MKQV----PAGSGVSDGIKLALKALS 190 >gi|227529693|ref|ZP_03959742.1| crossover junction endoribonuclease subunit A [Lactobacillus vaginalis ATCC 49540] gi|227350359|gb|EEJ40650.1| crossover junction endoribonuclease subunit A [Lactobacillus vaginalis ATCC 49540] Length = 200 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 52/206 (25%), Positives = 96/206 (46%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G + + Y++++V G+ Y + + K T++V +R D I L Sbjct: 1 MYEYLTGLVTVVEPRYIVVEVNGIGYRLLVANPYRYHIDKR-QKVTVYVYQAVRDDDISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++Q FM L +V G+G + A+ +L+ L+ +I + K + + PGI K Sbjct: 60 FGFSDEDEKQLFMQLINVSGIGPKSALAILANPDHEGLINAIANNDVKYLTRFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I +LK K L+ + + ++ +A+ AL LGY + + Sbjct: 120 ASQICLDLKDKIERLAPSESNLLKPL---LPENENVNDALQDALEALTALGYKEREVKR- 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + L+KE + +R ALR ++ Sbjct: 176 IKKELEKEGE-TSTEEYLRHALRLLN 200 >gi|319903005|ref|YP_004162733.1| Holliday junction DNA helicase subunit RuvA [Bacteroides helcogenes P 36-108] gi|319418036|gb|ADV45147.1| Holliday junction DNA helicase subunit RuvA [Bacteroides helcogenes P 36-108] Length = 200 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 105/205 (51%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I L +ID G+ Y + + T + + + C L++ +R+D L Sbjct: 1 MIEYIKGEIAELSPATAVIDCNGLGYAVNISLNTYAAV-QGKKECKLYIYEAIREDAYIL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F+LL SV G+G A +LS ++ +EL+ I +N+ ++ + GI +K Sbjct: 60 YGFADKQERELFLLLISVSGIGGNTARMILSALSPSELINVISTENANLLKSVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + S + + + A++AL LG+ Q + Sbjct: 120 AQRVIVDLKDKIK---TDSVATGSAGDMTSLLMAANTQVQEEAVAALTMLGFAQAPSQKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+++LK+ N A Q+I+LAL+ + Sbjct: 177 VLAILKENPN-APVEQVIKLALKRL 200 >gi|119716613|ref|YP_923578.1| Holliday junction DNA helicase subunit RuvA [Nocardioides sp. JS614] gi|166230576|sp|A1SJA6|RUVA_NOCSJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|119537274|gb|ABL81891.1| Holliday junction DNA helicase subunit RuvA [Nocardioides sp. JS614] Length = 200 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 8/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +++V GV I C TL+ L ++G L +R+D + L Sbjct: 1 MIAFVRGQVAAVTLSSAVLEVGGVGLDIMCTPGTLATL-RVGQQAALPTSMVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++Q F LLQ+ GVG ++A +L+ ++ +L +I + K + ++PGI K Sbjct: 60 FGFADEDEKQTFELLQTASGVGPKLAQAMLAVLSTDDLRLAITGDDVKTLTRVPGIGQKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL+ + + + LV LG+ A A Sbjct: 120 AQRIILELRDRI-------GAPTGAGRSAGVPAPAGAVWRDQVHQGLVGLGWPVRDAEKA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V +V + ++ D + ++R ALR +S Sbjct: 173 VAAVAPEAGDVPDVAALLRAALRTLS 198 >gi|329961622|ref|ZP_08299681.1| Holliday junction DNA helicase RuvA [Bacteroides fluxus YIT 12057] gi|328531614|gb|EGF58448.1| Holliday junction DNA helicase RuvA [Bacteroides fluxus YIT 12057] Length = 200 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 105/205 (51%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G I L +ID G+ Y + + T + + + C L++ +R+D L Sbjct: 1 MIEYIRGGIAELSPATAVIDCNGLGYAVNISLNTYAAI-QGKKECKLYIYEAIREDAYIL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F+LL SV G+G A +LS ++ +ELV I +N+ ++ + GI +K Sbjct: 60 YGFADKQERELFLLLISVSGIGGNTARMILSALSPSELVNVISTENANLLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + S+ + + A++AL LG+ Q + Sbjct: 120 AQRVIVDLKDKIKTGSAAAGDTGTIGG---LLTAANAQIQEEAVAALTMLGFAQAPSQKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+ +LK++ + A Q+I+LAL+ + Sbjct: 177 VLGILKEDPD-ASVEQVIKLALKRL 200 >gi|238792583|ref|ZP_04636216.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia intermedia ATCC 29909] gi|238728218|gb|EEQ19739.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia intermedia ATCC 29909] Length = 188 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 52/188 (27%), Positives = 92/188 (48%), Gaps = 4/188 (2%) Query: 18 LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQS 77 L++ GV Y + P+ L +G +F + +R+D L+GF +R F L Sbjct: 2 LLETNGVGYEVQLPMTCFYELPDLGQEAIIFTQFVVREDAQLLYGFNDKQERALFRELIK 61 Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137 V GVG ++A+ +LS ++A + V ++ ++ + ++PG+ K A R++ E+K + L+ Sbjct: 62 VNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKTAERLVVEMKDRFKGLNG 121 Query: 138 VVQQDMSCVN-KEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQ 196 + + + + S A SALV LGY +A+ V + K AD Sbjct: 122 DLFNNTGDIQLPASSSQTSDADIEAEAASALVALGYKPQEASRLVSKIAK---PGADCET 178 Query: 197 IIRLALRA 204 +IR ALR+ Sbjct: 179 LIRDALRS 186 >gi|291458999|ref|ZP_06598389.1| holliday junction DNA helicase RuvA [Oribacterium sp. oral taxon 078 str. F0262] gi|291418253|gb|EFE91972.1| holliday junction DNA helicase RuvA [Oribacterium sp. oral taxon 078 str. F0262] Length = 203 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 98/206 (47%), Gaps = 4/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + L E VL++ G+ Y I P L L G+ + +R+D + L Sbjct: 1 MIRYVRGILRELREGMVLVEAGGLGYGIRVPASLLPALPPPGEEVKIHTYFSVREDAMEL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ DR F+ L V G+G + A+G+LS + EL +I + + I PGI K Sbjct: 61 FGFLTAEDRDIFVRLLGVSGIGPKGALGILSVLRPEELRRAIFSGDIRSIQAAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K S + ++ A A+ AL++LGYG +A A Sbjct: 121 AERLILDLKDKID--PPDFLPAFSDGEIPEGGEEALRDSAKEALEALLSLGYGMAEAQRA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V V K +++ +LR ++ Sbjct: 179 VRRV--KLTEDMTPDDVLKQSLRHLA 202 >gi|148261887|ref|YP_001236014.1| Holliday junction DNA helicase RuvA [Acidiphilium cryptum JF-5] gi|326405391|ref|YP_004285473.1| Holliday junction ATP-dependent DNA helicase RuvA [Acidiphilium multivorum AIU301] gi|166229624|sp|A5G2L3|RUVA_ACICJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|146403568|gb|ABQ32095.1| Holliday junction DNA helicase subunit RuvA [Acidiphilium cryptum JF-5] gi|325052253|dbj|BAJ82591.1| Holliday junction ATP-dependent DNA helicase RuvA [Acidiphilium multivorum AIU301] Length = 204 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 69/206 (33%), Positives = 114/206 (55%), Gaps = 3/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G E + + LIDV GV Y+++C R+L+ L TL VET +R+D I L Sbjct: 1 MIGRLCGTAEQIEDGRCLIDVSGVGYVVFCSARSLAALPAPPARATLLVETQVREDAITL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+ +R WF LL ++QGVGA+VA+ +LS + +L +I + I + PG+ K+ Sbjct: 61 FGFIDAAERDWFRLLTTIQGVGAKVALNLLSALPPDQLASAIAASDRGAITRAPGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+R+++EL+ + ++ + +A+SALVNLGY + +A A Sbjct: 121 AARLISELRERIAAM---PTGSAFIPTGTAPPVAPPQGKLADALSALVNLGYRRAEAEAA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +V + A ++IR LR ++ Sbjct: 178 LSAVQAEAGEDAALDELIRGGLRRLA 203 >gi|209550796|ref|YP_002282713.1| Holliday junction DNA helicase RuvA [Rhizobium leguminosarum bv. trifolii WSM2304] gi|226698736|sp|B5ZP79|RUVA_RHILW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|209536552|gb|ACI56487.1| Holliday junction DNA helicase RuvA [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 204 Score = 154 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 93/206 (45%), Positives = 143/206 (69%), Gaps = 3/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + EDYVL+DV GVCY+ +C RTLS LG + C LF+ET++R+DQ++L Sbjct: 1 MIGKLKGTIDEIGEDYVLVDVHGVCYVAHCSARTLSKLGSADEACVLFIETYVREDQLKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF++ L+R+WF LLQSVQGVGA+VA+ VLS +T EL +I LQ+ +++ PG+ K+ Sbjct: 61 FGFMTALEREWFNLLQSVQGVGAKVALAVLSTLTPGELANAIALQDRAAVSRAPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++TELK +A + + + ++ K++ + +A+SAL NLGY +DQA A Sbjct: 121 AMRLVTELKNRAPAFAG---EAINIALKQELGEGVAAAPVADAVSALTNLGYSRDQAANA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + +K + AD +++IRL L+ ++ Sbjct: 178 VAAAMKTAGDDADSAKLIRLGLKELA 203 >gi|227872463|ref|ZP_03990804.1| possible crossover junction endonuclease RuvA [Oribacterium sinus F0268] gi|227841694|gb|EEJ51983.1| possible crossover junction endonuclease RuvA [Oribacterium sinus F0268] Length = 199 Score = 154 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 105/206 (50%), Gaps = 8/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G + + ED ++I+ G+ Y + P K G+ L +R+D L Sbjct: 1 MIRFIHGILREVKEDMLVIEAGGLGYGVRIPASVFDKAPKTGEEILLHTYFSVREDSQEL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + DR +F+ L SV G+G + A+G+ S ++ EL+ +II +SK I + PG+ K Sbjct: 61 FGFWEERDRDFFIKLLSVSGIGPKTALGIFSCMSREELIHAIISNDSKKIQKAPGLGKKS 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K +D++ +E + A+ ALV+LGY +A Sbjct: 121 AERLIVELRDKVPK------EDITFSGEEAVETTATSVAVEEAVEALVSLGYSVMEAKRW 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + S+ E+ A +++R++L+ + Sbjct: 175 IRSIPAYEEKTA--EELLRISLKQFA 198 >gi|15895553|ref|NP_348902.1| Holliday junction DNA helicase RuvA [Clostridium acetobutylicum ATCC 824] gi|20455254|sp|Q97GT0|RUVA_CLOAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|15025290|gb|AAK80242.1|AE007729_9 Holliday junction specific DNA helicase, subunit ruvA [Clostridium acetobutylicum ATCC 824] gi|325509702|gb|ADZ21338.1| Holliday junction DNA helicase motor protein [Clostridium acetobutylicum EA 2018] Length = 201 Score = 154 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 102/205 (49%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG G+ +DY+++D GV Y I+ T++ + K + +++ +RQD I L Sbjct: 1 MYEYIKGKYIGINKDYIIVDNNGVGYKIFTSGNTMANMPKPEEDVLIYLTQIVRQDFIGL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + + F L ++ GVGA+ ++ +LS T L +II + K I + PGI K Sbjct: 61 YGFLTKDELEMFNKLLTINGVGAKASLSLLSICTVNNLKYAIITGDEKTIVKAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K S+ + + S +N AL +LGY + + A Sbjct: 121 AQRIILELKDKFK--STDISKGNSEINNLDVDYDEHSKKLEEVRFALNSLGYSEKETDRA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +V K E II+ LR + Sbjct: 179 INNVDKSEG----IENIIKSCLRFL 199 >gi|311742330|ref|ZP_07716139.1| crossover junction ATP-dependent DNA helicase RuvA [Aeromicrobium marinum DSM 15272] gi|311313958|gb|EFQ83866.1| crossover junction ATP-dependent DNA helicase RuvA [Aeromicrobium marinum DSM 15272] Length = 199 Score = 154 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 60/210 (28%), Positives = 101/210 (48%), Gaps = 18/210 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D V++DV GV Y+ C T++ L +IG L +R+D + + Sbjct: 1 MIASLRGTVAAVSLDSVVLDVGGVGYLTRCTPGTIAGL-RIGQEAQLATTLVVREDSMTV 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L+Q+ GVG +VA+ +L+ + L ++I + + +PGI K Sbjct: 60 YGFADATERDMFELVQTASGVGPKVALAMLAVLDPDRLRQAIAQADHSTLMSVPGIGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK + S A P++ AL+ LG+ A A Sbjct: 120 AERIVVELKDRVGLAGS-------------AAPTGAPAWREQVHEALLGLGWPARDAERA 166 Query: 181 VVSVLKKEKNI----ADDSQIIRLALRAIS 206 V +V + AD S ++R ALR+++ Sbjct: 167 VDNVAADLADDPGAAADVSTLLRDALRSLA 196 >gi|152976839|ref|YP_001376356.1| Holliday junction DNA helicase motor protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189045741|sp|A7GTA3|RUVA_BACCN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|152025591|gb|ABS23361.1| Holliday junction DNA helicase RuvA [Bacillus cytotoxicus NVH 391-98] Length = 205 Score = 154 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G +E + +Y+++D G+ Y I+ P + ++ ++R+D + L Sbjct: 1 MFEYVTGYVEYVGPEYIVLDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMAL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+G + A+ +L+ ++V++I ++ + + + PG+ K Sbjct: 59 YGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIENEDERFLVKFPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK + V D+ + + A+ AL LGY + + Sbjct: 119 ARQMILDLKGKLADVVPDVFVDLFSDEERFDEKKGSSTELDEALEALRALGYAEREINRV 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +LK+ Q I+ AL + Sbjct: 179 LPELLKE---SLTTDQYIKKALSLL 200 >gi|169831522|ref|YP_001717504.1| Holliday junction DNA helicase RuvA [Candidatus Desulforudis audaxviator MP104C] gi|229560028|sp|B1I477|RUVA_DESAP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|169638366|gb|ACA59872.1| Holliday junction DNA helicase RuvA [Candidatus Desulforudis audaxviator MP104C] Length = 202 Score = 154 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 106/205 (51%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + +Y + V+++V G+ Y + P + L + G+ L+ +++ + + Sbjct: 1 MIDFLKGRLVSVYPEAVVVEVGGIGYRVQVPPSLAASLPEPGETVFLYTYLSVKETALEM 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S+LDR F+LL V G+G R A+ V+ R+ L +I+ +++ ++ +PGI +K Sbjct: 61 FGFSSELDRTAFLLLLGVAGIGPRTALAVVGRLGTRRLWAAILREDTGILTTVPGIGVKS 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RIM EL+ + V ++ + A++AL++LGY +A A Sbjct: 121 ARRIMVELRDRLEKQQVAVSAELPASD---GVPVLAGRAENEALAALISLGYTPREAREA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + ++ D + ++ ALR + Sbjct: 178 LNRLPDRK---LDAAGLVHAALRIM 199 >gi|18310930|ref|NP_562864.1| Holliday junction DNA helicase motor protein [Clostridium perfringens str. 13] gi|168208649|ref|ZP_02634274.1| holliday junction DNA helicase RuvA [Clostridium perfringens B str. ATCC 3626] gi|168214131|ref|ZP_02639756.1| holliday junction DNA helicase RuvA [Clostridium perfringens CPE str. F4969] gi|168215574|ref|ZP_02641199.1| holliday junction DNA helicase RuvA [Clostridium perfringens NCTC 8239] gi|169343575|ref|ZP_02864574.1| holliday junction DNA helicase RuvA [Clostridium perfringens C str. JGS1495] gi|20455244|sp|Q8XJ13|RUVA_CLOPE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|18145612|dbj|BAB81654.1| holliday junction DNA helicase [Clostridium perfringens str. 13] gi|169298135|gb|EDS80225.1| holliday junction DNA helicase RuvA [Clostridium perfringens C str. JGS1495] gi|170713198|gb|EDT25380.1| holliday junction DNA helicase RuvA [Clostridium perfringens B str. ATCC 3626] gi|170714360|gb|EDT26542.1| holliday junction DNA helicase RuvA [Clostridium perfringens CPE str. F4969] gi|182381996|gb|EDT79475.1| holliday junction DNA helicase RuvA [Clostridium perfringens NCTC 8239] Length = 201 Score = 154 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 105/205 (51%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I+G +G+ +DYV+I++ + Y I+ T+S + K+GD L++E +R+D I L Sbjct: 1 MYEYIRGQFQGISKDYVVIELNNIGYKIFTSGNTMSNMPKVGDEVLLYLEQIVREDFIGL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + + F LL S+ GVGA+ A+ +LS T L +I++ + K I + PGI K Sbjct: 61 YGFTTREELEMFKLLLSINGVGAKAALSLLSISTVNNLKYAIMMGDEKHITRAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K ++ S +SAL+ LGY + +A A Sbjct: 121 AQRIILELKDKLKPDELTSEEGQLIEGINDNSDYSFN--INETLSALMALGYTEKEAQKA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + V K +I+ +L+ + Sbjct: 179 LEKVDKTL----SIENMIKESLKLL 199 >gi|168204868|ref|ZP_02630873.1| holliday junction DNA helicase RuvA [Clostridium perfringens E str. JGS1987] gi|170663669|gb|EDT16352.1| holliday junction DNA helicase RuvA [Clostridium perfringens E str. JGS1987] Length = 201 Score = 154 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 104/205 (50%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I+G +G+ +DYV+I++ + Y I+ T+S + K+GD L++E +R+D I L Sbjct: 1 MYEYIRGQFQGISKDYVVIELNNIGYKIFTSGNTMSNMPKVGDEVLLYLEQIVREDFIGL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + + F LL S+ GVGA+ A+ +LS T L I++ + K I + PGI K Sbjct: 61 YGFTTREELEMFKLLLSINGVGAKAALSLLSISTVNNLKYGIMMGDEKHITRAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K ++ S +SAL+ LGY + +A A Sbjct: 121 AQRIILELKDKLKPDELTSEEGQLIEGINDNSDYSFN--INETLSALMALGYTEKEAQKA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + V K +I+ +L+ + Sbjct: 179 LEKVDKAL----SIENMIKESLKLL 199 >gi|237723715|ref|ZP_04554196.1| holliday junction DNA helicase ruvA [Bacteroides sp. D4] gi|265756839|ref|ZP_06090827.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 3_1_33FAA] gi|229437926|gb|EEO48003.1| holliday junction DNA helicase ruvA [Bacteroides dorei 5_1_36/D4] gi|263233625|gb|EEZ19245.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 3_1_33FAA] Length = 197 Score = 154 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 104/205 (50%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG+I + V++D G+ Y I + T S + + L++ +R+D L Sbjct: 1 MIEYIKGDIAEITPATVVLDCNGMGYGINISLNTYSAI-QNQSNTKLYIYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F+LL SV G+G A +LS ++ +EL I N K++ + GI +K Sbjct: 60 YGFSTKQERELFLLLISVSGIGGNTARMILSALSPSELCGVISSGNDKLLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + VN E + A+SAL LG+ Q + Sbjct: 120 AQRIIVDLKDKI------ATSGVETVNSEMFANPANTEIHDEAVSALTMLGFAQAASQKV 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++LK+E A ++I+LAL+ + Sbjct: 174 VAAILKEEP-AAPVEKVIKLALKRL 197 >gi|49476147|ref|YP_034188.1| Holliday junction DNA helicase motor protein [Bartonella henselae str. Houston-1] gi|81648457|sp|Q6G5R0|RUVA_BARHE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|49238955|emb|CAF28253.1| Holliday junction DNA helicase ruvA [Bartonella henselae str. Houston-1] Length = 205 Score = 154 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 75/207 (36%), Positives = 132/207 (63%), Gaps = 6/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG +E +++D+++++VQGV Y+++ R L +G+ +LF+ETH+R++ IRL Sbjct: 1 MIGKLKGILEHIFDDHIIVNVQGVGYVVFISNRLRPSLPALGESLSLFIETHVREEAIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF++ +++WF LLQ+V GVGA+VA+ +L ++ EL ++I L + +I++ PG+ K+ Sbjct: 61 FGFIAKAEQEWFCLLQNVPGVGAKVALAILGTLSPDELAQAIALNDIAMISRAPGVGKKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 + RI++ELK KA+ S V + H+ +A+SAL+ LG+ +DQA A Sbjct: 121 SERIVSELKSKALPFSEKV-----IHSAPLPHLEVTNQPTNDALSALIKLGFERDQAARA 175 Query: 181 VV-SVLKKEKNIADDSQIIRLALRAIS 206 + +V E + +IR +L+ +S Sbjct: 176 LALAVNALEGETVSSALLIRHSLKLLS 202 >gi|229086983|ref|ZP_04219140.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus Rock3-44] gi|228696359|gb|EEL49187.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus Rock3-44] Length = 205 Score = 154 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 95/205 (46%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G +E + +YV++D G+ Y I+ P + ++ ++R+D + L Sbjct: 1 MFEYVTGYVEYVGPEYVVLDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMAL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+G + A+ +L+ ++V++I ++ K + + PG+ K Sbjct: 59 YGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK + D+ + + A+ AL LGY + + Sbjct: 119 ARQMILDLKGKLADVVPDAFVDLFSDVERFDEKKGSSAELDEALEALRALGYAEREVNRV 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +LK+ Q I+ AL + Sbjct: 179 IPELLKE---SLTTDQYIKKALSLL 200 >gi|77464125|ref|YP_353629.1| Holliday junction DNA helicase RuvA [Rhodobacter sphaeroides 2.4.1] gi|126462968|ref|YP_001044082.1| Holliday junction DNA helicase RuvA [Rhodobacter sphaeroides ATCC 17029] gi|90135713|sp|Q3J0F6|RUVA_RHOS4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166200251|sp|A3PLU4|RUVA_RHOS1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|77388543|gb|ABA79728.1| Holliday junction DNA helicase subunit RuvA [Rhodobacter sphaeroides 2.4.1] gi|126104632|gb|ABN77310.1| Holliday junction DNA helicase RuvA [Rhodobacter sphaeroides ATCC 17029] Length = 224 Score = 154 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 121/222 (54%), Gaps = 17/222 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ D+VLIDV+GV YI+Y RTL+ + +G+ L+ E +R+D ++L Sbjct: 1 MIGKVAGILDFRGPDHVLIDVRGVGYIVYVSDRTLASMPGLGEGVALYTELVVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++W LL +VQGVGA+ M +L + A +I L +++ I PGI KI Sbjct: 61 FGFPTMIEKEWHRLLMTVQGVGAKAGMAILGALGAEGTARAITLGDARSIQAAPGIGPKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN----------------KEQAHICSMPSFAINAI 164 A R++ ELK KA +L ++ + K +A PS +A+ Sbjct: 121 AQRVVLELKSKAPALMAMGGGTAALAPSEPPEPEPGTSSGSRRKTRAPEPPRPSHTADAL 180 Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 SAL NLGY A AV + + AD + +IR AL+ ++ Sbjct: 181 SALANLGYQPTDAAQAVAQAAGESPD-ADTAALIRAALKLLA 221 >gi|182624414|ref|ZP_02952198.1| holliday junction DNA helicase RuvA [Clostridium perfringens D str. JGS1721] gi|177910417|gb|EDT72794.1| holliday junction DNA helicase RuvA [Clostridium perfringens D str. JGS1721] Length = 201 Score = 154 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 105/205 (51%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I+G +G+ +DYV+I++ + Y I+ T+S + K+G+ L++E +R+D I L Sbjct: 1 MYEYIRGQFQGISKDYVVIELNNIGYKIFTSGNTMSNMPKVGEEVLLYLEQIVREDFIGL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + + F LL S+ GVGA+ A+ +LS T L +I++ + K I + PGI K Sbjct: 61 YGFTTREELEMFKLLLSINGVGAKAALSLLSISTVNNLKYAIMMGDEKHITRAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K ++ S +SAL+ LGY + +A A Sbjct: 121 AQRIILELKDKLKPDELTSEEGQLIEGINDNSDYSFN--INETLSALMALGYTEKEAQKA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + V K +I+ +L+ + Sbjct: 179 LEKVDKTL----SIENMIKESLKLL 199 >gi|296137136|ref|YP_003644378.1| Holliday junction DNA helicase RuvA [Thiomonas intermedia K12] gi|295797258|gb|ADG32048.1| Holliday junction DNA helicase RuvA [Thiomonas intermedia K12] Length = 190 Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 97/206 (47%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L+DV GV Y + P+ TL L +G TL + T +R+D L Sbjct: 1 MIGRLHGTLLDKSPPQILLDVGGVGYEVDVPMSTLYDLPAVGHAVTLLIHTVIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L + G+G R+A+ VLS ++ +E+ +++ Q++ ++PGI K Sbjct: 61 YGFATAGERSTFRELLKISGIGPRIALAVLSGLSVSEIAQAVTQQDAVRFTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R +++ + A + + AL+ LGY + +A A Sbjct: 121 AER-------------LLLELKGKLGADLGGAATAAAGSASDVLQALIALGYSEREAAAA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 ++ IR AL++++ Sbjct: 168 AKAL----PEGCSVDDGIRQALKSLA 189 >gi|238019731|ref|ZP_04600157.1| hypothetical protein VEIDISOL_01606 [Veillonella dispar ATCC 17748] gi|237863772|gb|EEP65062.1| hypothetical protein VEIDISOL_01606 [Veillonella dispar ATCC 17748] Length = 202 Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 111/205 (54%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + L+++ +DV GV Y +Y P T L + G TLF ++R+D ++L Sbjct: 1 MIGYVRGIVTHLFKESCYVDVHGVGYRVYVPTTTRQQLIE-GHEATLFTYLNVREDAMQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ + + F+LL SV G+G +V +G+LS +T ++I + + ++PGI K Sbjct: 60 YGFWTEEEYELFILLISVSGIGPKVGLGILSGMTPEAFKLAVINGQVQQLTKLPGIGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K ++ + + + + + A AI ALV+LGY + Sbjct: 120 AERLVLELKDKLAKMTHISAESPAAIQPIGV---AASGAAGEAIEALVSLGYSERDVADI 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V S+ + D S++I+++L + Sbjct: 177 VESL---DDGKRDVSELIKVSLIEL 198 >gi|89099000|ref|ZP_01171880.1| Holliday junction DNA helicase motor protein [Bacillus sp. NRRL B-14911] gi|89086404|gb|EAR65525.1| Holliday junction DNA helicase motor protein [Bacillus sp. NRRL B-14911] Length = 203 Score = 154 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 97/205 (47%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +E + +Y++++ G+ Y I P S K G +F ++R+D L Sbjct: 1 MFEYIKGTVEFIGPEYIVVENNGLGYQISTP-NPFSYSNKQGGEIQIFTYHYVREDIFAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++ F L +V G+G + A+ +L+ ++V++I ++ + + PG+ K Sbjct: 60 YGFHSREEKMLFTKLLNVSGIGPKGALAILASGEPAQVVQAIEDEDEAFLVKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK ++ + + + AI AL LGY + + Sbjct: 120 ARQMILDLKGKLQEAIPDFFPNLFNPDAARPAATGSAALLEEAILALRALGYSEKEVKR- 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + L+KEK + I+ L+ + Sbjct: 179 IKPALEKEK--LTTDEYIKKGLQLL 201 >gi|229543702|ref|ZP_04432762.1| Holliday junction DNA helicase RuvA [Bacillus coagulans 36D1] gi|229328122|gb|EEN93797.1| Holliday junction DNA helicase RuvA [Bacillus coagulans 36D1] Length = 200 Score = 154 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 100/205 (48%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG I+ + DY++++ G+ Y + P IG +F H+R+D I L Sbjct: 1 MYEYIKGIIDSVSPDYIVVENGGIGYRLLAP-NPYIFSKSIGQERKIFTYQHVREDLIAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L +V G+G + A+ +L+ ++V++I +N + + PG+ K Sbjct: 60 YGFETAEERALFQKLLNVSGIGPKGALAILAYGQPQQVVDAIENENESFLVKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK L + + +A S A+ AL LGY + + Sbjct: 120 ARQMILDLKGKLQGLVPEMPDEAGVE---KAVPASTNQNLEEAMLALAALGYSEKEIAKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + ++ + + I+LAL+A+ Sbjct: 177 VPELPEE---VLSADEYIKLALKAM 198 >gi|225873651|ref|YP_002755110.1| Holliday junction DNA helicase RuvA [Acidobacterium capsulatum ATCC 51196] gi|254766934|sp|C1F8Z2|RUVA_ACIC5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|225792770|gb|ACO32860.1| Holliday junction DNA helicase RuvA [Acidobacterium capsulatum ATCC 51196] Length = 198 Score = 154 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 102/206 (49%), Gaps = 10/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + +++ GV Y + + T + L G L + T + +D I L Sbjct: 1 MIAHLRGTLLSKQPGQAIVECAGVGYDVAISVPTFTALPAEGAEVRLHIHTQVSEDAIAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL +++ F L +V GVG ++A+ +LS ++ V ++ Q+ + +IPG+ K+ Sbjct: 61 FGFLDREEKRLFERLITVSGVGPKLAIKMLSGLSPERTVAALRAQDHASLTRIPGVGKKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K L A + A + +SAL+NLGY + A A Sbjct: 121 AERLVVELKDKLDDL---------IAAAPAAGPVAAGPAAEDVLSALLNLGYQRPAALKA 171 Query: 181 VVSVLKKEKNIADDSQII-RLALRAI 205 + + ++K+ +D ++ R AL+ I Sbjct: 172 IETAVEKDAAAGEDFDLLFRAALKLI 197 >gi|212690798|ref|ZP_03298926.1| hypothetical protein BACDOR_00285 [Bacteroides dorei DSM 17855] gi|237708184|ref|ZP_04538665.1| holliday junction DNA helicase ruvA [Bacteroides sp. 9_1_42FAA] gi|212666675|gb|EEB27247.1| hypothetical protein BACDOR_00285 [Bacteroides dorei DSM 17855] gi|229457737|gb|EEO63458.1| holliday junction DNA helicase ruvA [Bacteroides sp. 9_1_42FAA] Length = 197 Score = 154 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 104/205 (50%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG+I + V++D G+ Y I + T S + + L++ +R+D L Sbjct: 1 MIEYIKGDIAEITPATVVLDCNGMGYGINISLNTYSAI-QNQSNTKLYIYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F+LL SV G+G A +LS ++ +EL I N K++ + GI +K Sbjct: 60 YGFSTKQERELFLLLISVSGIGGNTARMILSALSPSELCGVISSGNDKLLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + VN E + AISAL LG+ Q + Sbjct: 120 AQRIIVDLKDKI------ATSGVETVNSEMFANPANTEIHDEAISALTMLGFAQAASQKV 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++LK+E A ++I+LAL+ + Sbjct: 174 VAAILKEEP-AAPVEKVIKLALKRL 197 >gi|110800505|ref|YP_696628.1| Holliday junction DNA helicase RuvA [Clostridium perfringens ATCC 13124] gi|123148615|sp|Q0TP12|RUVA_CLOP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|110675152|gb|ABG84139.1| Holliday junction DNA helicase RuvA [Clostridium perfringens ATCC 13124] Length = 201 Score = 154 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 105/205 (51%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I+G +G+ +DYV+I++ + Y I+ T+S + K+G+ L++E +R+D I L Sbjct: 1 MYEYIRGQFQGISKDYVVIELNNIGYKIFTSGNTMSNMPKVGEEVLLYLEQIVREDFIGL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + + F LL S+ GVGA+ A+ +LS T L +I++ + K I + PGI K Sbjct: 61 YGFTTREELEMFKLLLSINGVGAKAALSLLSISTVNNLKYAIMMGDEKHITRAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K ++ S +SAL+ LGY + +A A Sbjct: 121 AQRIILELKDKLKPDELTSEEGELIEGINDNSDYSFN--INETLSALMALGYTEKEAQKA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + V K +I+ +L+ + Sbjct: 179 LEKVDKTL----SIENMIKESLKLL 199 >gi|160871606|ref|ZP_02061738.1| holliday junction DNA helicase RuvA [Rickettsiella grylli] gi|159120405|gb|EDP45743.1| holliday junction DNA helicase RuvA [Rickettsiella grylli] Length = 199 Score = 154 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 102/207 (49%), Gaps = 9/207 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI +++G + +L++V Y I + T L G+ L+ + +R+D Sbjct: 1 MINRLRGILVEKQPPILLVEVANAFTYEIQASMHTFYQLPHCGEKVFLYTQFIVREDGHF 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + +R F L V GVG +VA+G+LS+I TE V + QN + +PGI K Sbjct: 61 LYGFSTPEERFLFTQLLKVSGVGPKVALGILSKIEVTEFVSCVEQQNVNSLQAVPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ E++ + +LS + + + I S+ +AI+AL+ LGY +A+ Sbjct: 121 TAERLIIEMRDRLRNLSHNQPEILD-----KNTIQSLKHIQQDAIAALMALGYKNQEASR 175 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV+ + +IR AL I+ Sbjct: 176 AVLRIKDA---SLSLEALIRHALNTIN 199 >gi|293371094|ref|ZP_06617631.1| Holliday junction DNA helicase RuvA [Bacteroides ovatus SD CMC 3f] gi|292633752|gb|EFF52304.1| Holliday junction DNA helicase RuvA [Bacteroides ovatus SD CMC 3f] Length = 200 Score = 154 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + L +ID GV Y + T S + + C L++ +R+D L Sbjct: 1 MIEYIRGELVELSPATAVIDCNGVGYAANISLNTYSAI-QGKKSCKLYIYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F+LL SV G+G A +LS ++ ELV I +N+ ++ + GI +K Sbjct: 60 YGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K ++ S Q + A+SAL LG+ + Sbjct: 120 AQRVIVDLKDKIKTMGMSAAGGASAGLLLQ---PANAEVQEEAVSALTMLGFAAAPSQKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+++LK+E + A ++I+LAL+ + Sbjct: 177 VLAILKEEPD-APVEKVIKLALKRL 200 >gi|320528952|ref|ZP_08030044.1| Holliday junction DNA helicase RuvA [Selenomonas artemidis F0399] gi|320138582|gb|EFW30472.1| Holliday junction DNA helicase RuvA [Selenomonas artemidis F0399] Length = 198 Score = 154 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 103/205 (50%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + D+ L+DV V Y ++ +T + + + G+ L++ TH+R+D I L Sbjct: 1 MIGFLRGTVVHSAVDHCLLDVHNVGYRVFVSRKTCAHIAQ-GEEALLYIHTHVREDAILL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S + F L + G+G + A +LS +T + I ++ K I ++PGI K Sbjct: 60 YGFFSQEEYDLFQHLIGISGIGPKGAQSILSEVTPHDFYRLIHKKDVKGITKLPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + + D S V S A AL++LG+ Q++ Sbjct: 120 AERLVLELKDKFGAYADTGVDDTSAV-----VSDVSDSMLAEATEALMSLGFQQNE---- 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +V + + + +++R AL + Sbjct: 171 IQTVFQGKTDYQSTEELVRYALSVL 195 >gi|242280346|ref|YP_002992475.1| Holliday junction DNA helicase RuvA [Desulfovibrio salexigens DSM 2638] gi|259495638|sp|C6C065|RUVA_DESAD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|242123240|gb|ACS80936.1| Holliday junction DNA helicase RuvA [Desulfovibrio salexigens DSM 2638] Length = 203 Score = 154 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 103/207 (49%), Gaps = 8/207 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I G + + +I GV Y ++ + +S L + G T +V + +R+D Sbjct: 1 MIAYIHGKLLEATDKSCIILTPGGVGYELFLTLSAISTLPESGSDVTFYVHSVIREDAFD 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF DR+ F L SV +G + A+ +LS+ +L + + ++ K ++ +PGI K Sbjct: 61 LYGFPCFDDREVFRTLISVDRLGPKKALAILSQFGPKDLQDLVFREDVKTLSIVPGIGPK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I+ LK K +L S + V + S ++A+S L NLGYG D+ Sbjct: 121 SARQILWSLKDKMETLKS------ATVRSGACPVEGDRSEFLDALSGLRNLGYGDDEVRD 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 + + +E ++ D IR+AL+ IS Sbjct: 175 FLKDIFDEEPDL-DAGGAIRVALKKIS 200 >gi|254445801|ref|ZP_05059277.1| Holliday junction DNA helicase RuvA [Verrucomicrobiae bacterium DG1235] gi|198260109|gb|EDY84417.1| Holliday junction DNA helicase RuvA [Verrucomicrobiae bacterium DG1235] Length = 205 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 59/204 (28%), Positives = 102/204 (50%), Gaps = 2/204 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G +E +I+ G+ Y+++ P+ T + L G+ L R+D L Sbjct: 1 MIVSIEGILERATPLTAIINAGGLGYLVHIPVSTAAKLPANGETVKLHTHAVYREDSQSL 60 Query: 61 FGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GF S+ +R +F LL V GVG +VA+G++S++ L+ +I ++ ++A+ PGI K Sbjct: 61 YGFASEDERNFFQLLIEKVSGVGPKVAIGMMSKLELPSLISAIGNADAVLLAKTPGIGKK 120 Query: 120 IASRIMTELKGKAISLS-SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ ELK K + + + + + S +AI AL+ LGY Q A Sbjct: 121 TAERVVIELKDKLGAFAHTSSANPLQGLVPGNTAAAGKVSHEDDAILALLALGYKQSDAA 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLAL 202 +V ++ A +I+ AL Sbjct: 181 KSVGKAVEALGPNASTEALIKAAL 204 >gi|289422389|ref|ZP_06424235.1| holliday junction DNA helicase RuvA [Peptostreptococcus anaerobius 653-L] gi|289157224|gb|EFD05843.1| holliday junction DNA helicase RuvA [Peptostreptococcus anaerobius 653-L] Length = 207 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 69/202 (34%), Positives = 98/202 (48%), Gaps = 5/202 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG IKG I+ + DY+LI+ G+ Y + TLS L IG ++ + +R+D I L Sbjct: 1 MIGYIKGIIDEIGIDYILIENNGIGYKLLVSTTTLSQL-SIGQEAKIYTKMIVREDDISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF S + + F LL SV VG +V MG+LS + II + +++ PG+ K Sbjct: 60 CGFYSKEEEEMFKLLTSVSKVGTKVGMGILSFAPPARIQSIIINSDVTAMSKAPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + M + I S AISAL+ LGY +A + Sbjct: 120 AERIILELKDKVGKIVIDGLDTMENLPLSGKEIAIDNS-EDEAISALIALGYTSSEAQES 178 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 V V + D II+ AL Sbjct: 179 VNFVKQ---PGMDVEVIIKKAL 197 >gi|224025806|ref|ZP_03644172.1| hypothetical protein BACCOPRO_02548 [Bacteroides coprophilus DSM 18228] gi|224019042|gb|EEF77040.1| hypothetical protein BACCOPRO_02548 [Bacteroides coprophilus DSM 18228] Length = 198 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 102/205 (49%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + + +I+ G+ Y I + T S + + L++ +R+D L Sbjct: 1 MIEYIKGEVIEVVPAQAVIECNGIGYAISISLNTFSAI-QGKKEVKLYIYEAIREDAHIL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F+LL +V G+G A +LS ++ +EL I N K++ + GI +K Sbjct: 60 YGFYTRQERELFLLLITVSGIGGNTARMILSALSPSELCNVISSGNDKLLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K S ++ V + A++AL LG+ Q + Sbjct: 120 AQRIIVDLKDKIASTGIDTAAPVTSV-----IASANTEVYEEAVAALTMLGFAQAPSQKV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +LK+E ++ ++I+LAL+ + Sbjct: 175 VGLLLKEEPDLP-VEKVIKLALKRL 198 >gi|289578210|ref|YP_003476837.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter italicus Ab9] gi|297544491|ref|YP_003676793.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289527923|gb|ADD02275.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter italicus Ab9] gi|296842266|gb|ADH60782.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 187 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 97/205 (47%), Gaps = 20/205 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G IE + ++YV+ID G+ ++ P TL L G+ L+ H+R+D ++ Sbjct: 1 MIEYIRGMIEDIGQNYVIIDFMGIGIKVFVPFSTLKALPTKGNITKLYTYLHVREDGFQI 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F L SV GVG + A+ +LS + + + + K + +PGI K Sbjct: 61 FGFKTKEELDLFEKLLSVNGVGPKGALSILSVVPIDNFAKVVNTGDYKALTLVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + S + + A+ AL+ LGY + +A +A Sbjct: 121 AERIILELKDKLPK---------------EIVFESDNNLSNEALEALLALGYSKSEAISA 165 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + ++ AL+ + Sbjct: 166 LADI-----TCNSVEETVKQALKKL 185 >gi|229586656|ref|YP_002845157.1| Holliday junction DNA helicase RuvA [Rickettsia africae ESF-5] gi|259495654|sp|C3PNA4|RUVA_RICAE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|228021706|gb|ACP53414.1| Holliday junction DNA helicase RuvA [Rickettsia africae ESF-5] Length = 203 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 71/203 (34%), Positives = 122/203 (60%), Gaps = 6/203 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G ++ +DYV+IDV GV Y++Y +TL L + G+F LF+ETH+R++ I L Sbjct: 1 MIGQLSGKVDAQGDDYVIIDVNGVGYLVYASGKTLGKLAE-GEFYKLFIETHVREEHIHL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ +F LLQSV G+G R+A+ +LS +T +++ ++ ++ + I G+ K+ Sbjct: 60 YGFLNLEEKIFFNLLQSVNGIGTRMALFILSSLTPSDIQIAVNNEDKNIFKAISGVGAKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELKGK +SS + + + P + I ALVNLG+ + +A A Sbjct: 120 AERIVLELKGKVAKISS----GSAIIKESLNIKHITPVASNEVIKALVNLGFSRFEAQNA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V ++ + I ++I+ AL+ Sbjct: 176 VQGIITQNPEI-SIDELIKTALK 197 >gi|269103018|ref|ZP_06155715.1| holliday junction DNA helicase RuvA [Photobacterium damselae subsp. damselae CIP 102761] gi|268162916|gb|EEZ41412.1| holliday junction DNA helicase RuvA [Photobacterium damselae subsp. damselae CIP 102761] Length = 187 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 53/188 (28%), Positives = 89/188 (47%), Gaps = 7/188 (3%) Query: 22 QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGV 81 G+ Y + P+ L ++G +F +R+D L+GF +R+ F + GV Sbjct: 2 GGIGYEVQMPMSCFYELPEVGQEAIIFTHFVVREDAQLLYGFNKKSERELFREVIKANGV 61 Query: 82 GARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS---- 137 G ++ + +LS +TA++ V S+ ++ + +IPG+ K A R++ E+K + Sbjct: 62 GPKLGLAILSAMTASQFVLSVEQEDITTLVKIPGVGKKTAERLLVEMKDRLKGWGEGDLF 121 Query: 138 VVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQI 197 QD + N + S A+SALV LGY QA+ V V + E I Sbjct: 122 TPAQDTAASNAPIQNPSSQARAEDEAVSALVALGYKPQQASKVVSQVAQPE---MSSETI 178 Query: 198 IRLALRAI 205 IR ALR++ Sbjct: 179 IREALRSM 186 >gi|326201641|ref|ZP_08191512.1| Holliday junction DNA helicase RuvA [Clostridium papyrosolvens DSM 2782] gi|325988241|gb|EGD49066.1| Holliday junction DNA helicase RuvA [Clostridium papyrosolvens DSM 2782] Length = 201 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 54/206 (26%), Positives = 105/206 (50%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +E D ++++ G+ Y I+ + T++ LG+ G +F ++R+D L Sbjct: 1 MFAYIKGTVEVKNNDSIIVEAGGIGYRIFTALSTINNLGQTGTTVKIFTHYYVREDIAAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + F +L +V GVG + A+ ++S ++ + +++ Q++K + + GI MK+ Sbjct: 61 YGFGTMEELSMFEMLLAVSGVGPKAAISLISTLSPSRFALAVVSQDTKSLTKAQGIGMKM 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + + S A+SAL+ LGYG +A+ Sbjct: 121 AQRIILELKDKISKEQLTASIPTAGS---ENSFAPGDSVLSEAVSALMVLGYGSVEASGI 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + + +I+ AL+++S Sbjct: 178 ITGIYE---DGMSVEDLIKKALKSLS 200 >gi|317496792|ref|ZP_07955122.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium 5_1_63FAA] gi|316895804|gb|EFV17956.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium 5_1_63FAA] Length = 201 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 107/205 (52%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG +E + V++D G+ Y + P+R KIG ++ H+R+D + L Sbjct: 1 MISYIKGILEDMSPGMVVVDNHGIGYQMMVPMRG-ESFPKIGQEIKIYTHMHVREDDVSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLS +++ F LL V G+G +V + VLS ++ EL ++I ++ K I++ PG+ K Sbjct: 60 FGFLSKEEKEAFELLIGVNGIGPKVGLSVLSTLSVYELKMAVISEDVKTISKTPGLGPKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK K +++D S S I I LV+LGY + +A A Sbjct: 120 AKKLILELKDKLS--FEELEEDGVGAEIFDTSADSSDSVMI-TIEGLVSLGYSKSEAAIA 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V ++ ++++ AL+ I Sbjct: 177 VNKV--EDAKDLTPEELLKKALKNI 199 >gi|310643559|ref|YP_003948317.1| holliday junction ATP-dependent DNA helicase ruva [Paenibacillus polymyxa SC2] gi|309248509|gb|ADO58076.1| Holliday junction ATP-dependent DNA helicase ruvA [Paenibacillus polymyxa SC2] Length = 204 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G++ L +YV++DVQGV Y ++CP K ++ H+R+D I L Sbjct: 1 MIDFLRGSVAHLENEYVVLDVQGVGYRVFCPNP--YAFAKTEGPVVIYTHHHVREDAILL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++Q F L V G+G RVA+G+L T +V +I +N + ++PGI K Sbjct: 59 FGFATREEQQLFRKLIDVSGIGPRVALGILGGGTPAHVVTAIYQENITFLTKLPGIGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + ++ + + E A S+ A AL LGY + Sbjct: 119 AQRMILDLKDKLDGIGAL--GMATGLFAEPAVEEGQGSYWSEAREALKALGYTDAELDKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + K K +++ AL+ + Sbjct: 177 WSKMKKDAKPDDSADILMKRALQLL 201 >gi|220928772|ref|YP_002505681.1| Holliday junction DNA helicase RuvA [Clostridium cellulolyticum H10] gi|254766954|sp|B8I1A3|RUVA_CLOCE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|219999100|gb|ACL75701.1| Holliday junction DNA helicase RuvA [Clostridium cellulolyticum H10] Length = 199 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 108/205 (52%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +E D ++++ G+ Y I+ + T++ +G+ G ++ ++R+D L Sbjct: 1 MFAYIKGTVEEKNNDSIIVEAGGIGYRIFTALSTINNMGQNGTTVKIYTHYYVREDIAVL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + F +L +V GVG + A+ ++S ++ + +++ Q++K + + PGI MK+ Sbjct: 61 YGFGTVEELTMFEMLLTVSGVGPKAAISMISTLSPSRFYLAVVSQDTKSLTKAPGIGMKM 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K M+ + S A+SAL+ LGYG +A++ Sbjct: 121 AQRIILDLKDKISKEQLTSSIPMTSPENNEVT---GDSVLSEAVSALMVLGYGSAEASST 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + +K ++++ AL+++ Sbjct: 178 ISGIYEK---GISVEELVKKALKSL 199 >gi|150004217|ref|YP_001298961.1| Holliday junction DNA helicase RuvA [Bacteroides vulgatus ATCC 8482] gi|254884765|ref|ZP_05257475.1| holliday junction DNA helicase ruvA [Bacteroides sp. 4_3_47FAA] gi|294774978|ref|ZP_06740508.1| Holliday junction DNA helicase RuvA [Bacteroides vulgatus PC510] gi|319644172|ref|ZP_07998697.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacteroides sp. 3_1_40A] gi|166230518|sp|A6L0X5|RUVA_BACV8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|149932641|gb|ABR39339.1| Holliday junction DNA helicase ruvA [Bacteroides vulgatus ATCC 8482] gi|254837558|gb|EET17867.1| holliday junction DNA helicase ruvA [Bacteroides sp. 4_3_47FAA] gi|294451187|gb|EFG19657.1| Holliday junction DNA helicase RuvA [Bacteroides vulgatus PC510] gi|317384294|gb|EFV65265.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacteroides sp. 3_1_40A] Length = 197 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 103/205 (50%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG+I + V++D G+ Y I + T S + + L++ +R+D L Sbjct: 1 MIEYIKGDIAEITPATVVLDCNGMGYGINISLNTYSAI-QNQSNTKLYIYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F+LL SV G+G A +LS ++ +EL I N K++ + GI +K Sbjct: 60 YGFSTKQERELFLLLISVSGIGGNTARMILSALSPSELCGVISSGNDKLLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + VN E A++AL LG+ Q + Sbjct: 120 AQRIIVDLKDKI------ATSGVETVNSEMFANPGNTEIHDEAVAALTMLGFAQAASQKV 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++LK+E A ++I+LAL+ + Sbjct: 174 VAAILKEEP-AAPVEKVIKLALKRL 197 >gi|239907719|ref|YP_002954460.1| holliday junction DNA helicase RuvA [Desulfovibrio magneticus RS-1] gi|259495640|sp|C4XIJ9|RUVA_DESMR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|239797585|dbj|BAH76574.1| holliday junction DNA helicase RuvA [Desulfovibrio magneticus RS-1] Length = 202 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 100/207 (48%), Gaps = 10/207 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG ++G + + + ++ GV Y + P + L G +LFV T +R+D + Sbjct: 1 MIGYLEGRVVARRDRFAIVLTPGGVGYELELPTPVAAALPAPGGQVSLFVHTVVREDALE 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF S DR+ F L + +G R A+ +LS TA +L+ + +++ + ++PGI K Sbjct: 61 LFGFASLDDRETFRTLIGISKLGPRTALAILSHFTADDLLRVVASGDAEALVRVPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI EL K + S + A + ++ L NLGY + +A Sbjct: 121 SAQRIFIELSYKLEGRAPAAGLAPS--------VPIPGGVAGDVVAGLTNLGYPEPEARQ 172 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 VL+ E ++ D + +R AL+ ++ Sbjct: 173 VAAEVLEAEPDL-DVAAALRQALKRLA 198 >gi|295084896|emb|CBK66419.1| Holliday junction DNA helicase subunit RuvA [Bacteroides xylanisolvens XB1A] Length = 200 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 104/205 (50%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + L +ID GV Y + T S + + C L++ +R+D L Sbjct: 1 MIEYIRGELAELSPATAVIDCNGVGYAANISLNTYSAI-QGKKNCKLYIHEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F+LL SV G+G A +LS ++ ELV I +N+ ++ + GI +K Sbjct: 60 YGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K ++S S Q + A+SAL LG+ + Sbjct: 120 AQRVIVDLKDKIKTMSGSAGGGSSAGLLLQ---PANAEVQEEAVSALTMLGFAAAPSQKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+++LK+E + A ++I+LAL+ + Sbjct: 177 VLAILKEEPD-APVEKVIKLALKRL 200 >gi|237714009|ref|ZP_04544490.1| holliday junction DNA helicase ruvA [Bacteroides sp. D1] gi|262407061|ref|ZP_06083610.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 2_1_22] gi|294644868|ref|ZP_06722608.1| Holliday junction DNA helicase RuvA [Bacteroides ovatus SD CC 2a] gi|294809795|ref|ZP_06768479.1| Holliday junction DNA helicase RuvA [Bacteroides xylanisolvens SD CC 1b] gi|229445833|gb|EEO51624.1| holliday junction DNA helicase ruvA [Bacteroides sp. D1] gi|262355764|gb|EEZ04855.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 2_1_22] gi|292639806|gb|EFF58084.1| Holliday junction DNA helicase RuvA [Bacteroides ovatus SD CC 2a] gi|294443035|gb|EFG11818.1| Holliday junction DNA helicase RuvA [Bacteroides xylanisolvens SD CC 1b] Length = 200 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 104/205 (50%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + L +ID GV Y + T S + + C L++ +R+D L Sbjct: 1 MIEYIRGELAELSPATAVIDCNGVGYAANISLNTYSAI-QGKKNCKLYIHEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F+LL SV G+G A +LS ++ ELV I +N+ ++ + GI +K Sbjct: 60 YGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K ++S S Q + A+SAL LG+ + Sbjct: 120 AQRVIVDLKDKIKTMSGSAGGGASAGLLLQ---PANAEVQEEAVSALTMLGFAAAPSQKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+++LK+E + A ++I+LAL+ + Sbjct: 177 VLAILKEEPD-APVEKVIKLALKRL 200 >gi|239978432|ref|ZP_04700956.1| Holliday junction DNA helicase RuvA [Streptomyces albus J1074] gi|291450328|ref|ZP_06589718.1| holliday junction DNA helicase subunit B [Streptomyces albus J1074] gi|291353277|gb|EFE80179.1| holliday junction DNA helicase subunit B [Streptomyces albus J1074] Length = 208 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 60/212 (28%), Positives = 101/212 (47%), Gaps = 13/212 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L D +++V G+ + C TLS L ++G+ L +R+D + L Sbjct: 1 MIASVSGTVAALAPDSAVVEVGGIGMAVQCTPDTLSGL-RVGEQARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ L ++ + K + +PGI K Sbjct: 60 YGFADDDERQTFELLQTASGVGPRLAQSMLAVHHPDALRRAVATGDEKALTAVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK + + Q V A ++ +ALV LGY +A A Sbjct: 120 AQKLLLELKDRLGAPRGATQAARPAVASGPAP------WSEQLHTALVGLGYAPREADDA 173 Query: 181 VVSVLKK------EKNIADDSQIIRLALRAIS 206 V +V + E Q++R AL++++ Sbjct: 174 VAAVTPQAEAALAEGGRPAVPQLLRAALQSLN 205 >gi|260173998|ref|ZP_05760410.1| Holliday junction DNA helicase RuvA [Bacteroides sp. D2] gi|315922266|ref|ZP_07918506.1| holliday junction DNA helicase ruvA [Bacteroides sp. D2] gi|313696141|gb|EFS32976.1| holliday junction DNA helicase ruvA [Bacteroides sp. D2] Length = 200 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + L +ID GV Y + T S + + C L++ +R+D L Sbjct: 1 MIEYIRGELAELSPATAVIDCNGVGYAANISLNTYSAI-QGKKSCKLYIYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F+LL SV G+G A +LS ++ ELV I +N+ ++ + GI +K Sbjct: 60 YGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K ++ S Q + A+SAL LG+ + Sbjct: 120 AQRVIVDLKDKIKTMGMSAAGGASAGLLLQ---PANAEVQEEAVSALTMLGFAAAPSQKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+++LK+E + A ++I+LAL+ + Sbjct: 177 VLAILKEEPD-APVEKVIKLALKRL 200 >gi|67458996|ref|YP_246620.1| Holliday junction DNA helicase motor protein [Rickettsia felis URRWXCal2] gi|75536568|sp|Q4ULW8|RUVA_RICFE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|67004529|gb|AAY61455.1| Holliday junction DNA helicase RuvA [Rickettsia felis URRWXCal2] Length = 203 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 73/203 (35%), Positives = 121/203 (59%), Gaps = 6/203 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G I+ +DY++IDV GV Y++Y +TL L + G+F LF+ETH+R++ I L Sbjct: 1 MIGKLSGKIDSQGDDYIIIDVNGVGYLVYASGKTLGKLAE-GEFYKLFIETHVREEHIHL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ +F LLQSV G+G R+A+ +LS +T +++ +I ++ + I G+ K+ Sbjct: 60 YGFLTLEEKNFFNLLQSVNGIGTRMALSILSSLTPSDIQIAINNEDKNIFKAISGVGAKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELKGK +SS +N + + I ALVNLG+ + +A A Sbjct: 120 AERIVLELKGKVAKISSGSVIIKDSLNIKNITPVASN----EVIKALVNLGFSRFEAQNA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V ++ + I ++I+ AL+ Sbjct: 176 VQGIIIQNPEI-SIDELIKTALK 197 >gi|238762969|ref|ZP_04623936.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia kristensenii ATCC 33638] gi|238698727|gb|EEP91477.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia kristensenii ATCC 33638] Length = 189 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 53/189 (28%), Positives = 92/189 (48%), Gaps = 5/189 (2%) Query: 18 LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQS 77 L++ GV Y + P+ L +G +F + +R+D L+GF +R F L Sbjct: 2 LLETNGVGYEVQLPMTCFYELPDLGQEAIIFTQFVVREDAQLLYGFNDKQERALFRELIK 61 Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSS 137 V GVG ++A+ +LS ++A + V ++ ++ + ++PG+ K A R++ E+K + L+ Sbjct: 62 VNGVGPKLALAILSGMSAQQFVAAVEREDITTLVKLPGVGKKTAERLVVEMKDRFKGLNG 121 Query: 138 VVQQDMSCVNKEQAHIC--SMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDS 195 + + + + S A SALV LGY +A+ V + K AD Sbjct: 122 DLFNNTGDIQLPASSSSQISDADIEAEAASALVALGYKPQEASRLVSKIAK---PGADCE 178 Query: 196 QIIRLALRA 204 +IR ALRA Sbjct: 179 TLIRDALRA 187 >gi|160882733|ref|ZP_02063736.1| hypothetical protein BACOVA_00691 [Bacteroides ovatus ATCC 8483] gi|156111903|gb|EDO13648.1| hypothetical protein BACOVA_00691 [Bacteroides ovatus ATCC 8483] Length = 200 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + L +ID GV Y + T S + + C L++ +R+D L Sbjct: 1 MIEYIRGELAELSPATAVIDCNGVGYAANISLNTYSAI-QGKKSCKLYIYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F+LL SV G+G A +LS ++ ELV I +N+ ++ + GI +K Sbjct: 60 YGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K ++ +S Q + A+SAL LG+ + Sbjct: 120 AQRVIVDLKDKIKTMGMSAAGGVSAGLLLQ---PANAEVQEEAVSALTMLGFAAAPSQKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+++LK+E + A ++I+LAL+ + Sbjct: 177 VLAILKEEPD-APVEKVIKLALKRL 200 >gi|323486643|ref|ZP_08091964.1| Holliday junction DNA helicase RuvA [Clostridium symbiosum WAL-14163] gi|323400024|gb|EGA92401.1| Holliday junction DNA helicase RuvA [Clostridium symbiosum WAL-14163] Length = 203 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 104/206 (50%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + D ++++ V IY P+ L L +G+ ++ +R+D + L Sbjct: 1 MISYVKGALAEKSGDRIVVEAGPVGLGIYVPLSVLEVLPPLGEEVKIYTYLQVREDDLSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ D F L V G+G + A+G+LS ++ +L +I+ ++K I++ PG+ K Sbjct: 61 YGFLNRQDLDMFRRLIGVNGIGPKGALGILSALSPDDLRLAILTGDAKAISKAPGVGAKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + + E+ + M A +ALV LGY +A+ A Sbjct: 121 AQRIILDLKDKVSAEEMLASV---ADTDERTSVPLMQEAGREAATALVALGYSNLEASKA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V +V + D ++R +L+ ++ Sbjct: 178 VKNV--QITEDMDAEAVLRASLKYLA 201 >gi|139438977|ref|ZP_01772437.1| Hypothetical protein COLAER_01443 [Collinsella aerofaciens ATCC 25986] gi|133775688|gb|EBA39508.1| Hypothetical protein COLAER_01443 [Collinsella aerofaciens ATCC 25986] Length = 206 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + ++DV GV + + T + L G L+ +R+D + L Sbjct: 1 MISQLHGTLVEATMSSAVVDVSGVGFELGISGSTAATLPTPGGEVRLYTRMQVREDAMTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L SV GVG R+A+ VLS T +L ++ ++ K +A++PG+ K Sbjct: 61 FGFASKDERTMFDRLVSVSGVGPRLALAVLSTYTVGQLYSLVMAEDDKGMAKVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK V D + PS +A +AL+++G+ + A Sbjct: 121 AQRLILELKSTFAKDKGFVPVDAIPGQVAMPVPAAAPSAIDDARAALLSMGFSPQETDVA 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + ++ AL+ + Sbjct: 181 LS---GYDGQDMRVEDLLGAALKRL 202 >gi|237720151|ref|ZP_04550632.1| holliday junction DNA helicase ruvA [Bacteroides sp. 2_2_4] gi|229450703|gb|EEO56494.1| holliday junction DNA helicase ruvA [Bacteroides sp. 2_2_4] Length = 200 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + L +ID GV Y + T S + + C L++ +R+D L Sbjct: 1 MIEYIRGELAELSPATAVIDCNGVGYAANISLNTYSAI-QGKKSCKLYIYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F+LL SV G+G A +LS ++ ELV I +N+ ++ + GI +K Sbjct: 60 YGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K ++ + S Q + A+SAL LG+ + Sbjct: 120 AQRVIVDLKDKIKTMGTSAAGGASAGLLLQ---PANVEVQEEAVSALTMLGFAAAPSQKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+++LK+E + A ++I+LAL+ + Sbjct: 177 VLAILKEEPD-APVEKVIKLALKRL 200 >gi|163745818|ref|ZP_02153177.1| Holliday junction DNA helicase motor protein [Oceanibulbus indolifex HEL-45] gi|161380563|gb|EDQ04973.1| Holliday junction DNA helicase motor protein [Oceanibulbus indolifex HEL-45] Length = 225 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 116/223 (52%), Gaps = 18/223 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G I+ D+VLIDV+GV Y++Y RT++ L +G+ L+ + +R+D ++L Sbjct: 1 MIGKLSGRIDYRAADHVLIDVRGVGYLVYVSDRTMAALPSVGEVVALYTDLVVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++W LL SVQGVGA+ ++ +L + + +I L + + GI KI Sbjct: 61 FGFQTLVEKEWHRLLTSVQGVGAKASLAILGTLGPDGVSRAIALGDWNAVKAAKGIGPKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQA-----------------HICSMPSFAINA 163 A R++ +LK KA + ++ + + +A S A Sbjct: 121 AQRVVLDLKDKAPGVMAMTGTVADAMGEAEAAADESVIEAATPRRAPKPAAPNASAQSEA 180 Query: 164 ISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 +SAL NLGYG A AV + + AD +IR AL+ ++ Sbjct: 181 LSALGNLGYGPGDAAGAVAQAAGEMPD-ADTPTLIRAALKLLA 222 >gi|261417028|ref|YP_003250711.1| Holliday junction DNA helicase RuvA [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373484|gb|ACX76229.1| Holliday junction DNA helicase RuvA [Fibrobacter succinogenes subsp. succinogenes S85] Length = 202 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 93/205 (45%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +I+G + +V+++ GV Y + T L + G L +R+D + L Sbjct: 1 MIERIRGVLVQKSPTFVVVECAGVGYGVNISAFTAGKLPEEGAEVILHTNLVVREDSMTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ F++L V GVG ++A +LS T +L+ I N + +I G+ K Sbjct: 61 FGFADTTEKNLFLMLLEVNGVGPKLAQRILSGSTPADLLNMIASDNKSALGKIKGLGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ++ LK KA ++ + + ++ + A+ AL LG A A Sbjct: 121 CEQMTLTLKEKASNMLQALGD---VEGSGITSVGALTGAKLEAVLALHTLGVKDPAAEKA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 VV ++ + AD + +I AL+ + Sbjct: 178 VVKAVEVLGDGADAAALIPEALKYL 202 >gi|313894615|ref|ZP_07828178.1| Holliday junction DNA helicase RuvA [Veillonella sp. oral taxon 158 str. F0412] gi|313440805|gb|EFR59234.1| Holliday junction DNA helicase RuvA [Veillonella sp. oral taxon 158 str. F0412] Length = 202 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 109/205 (53%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + L+++ +DV GV Y +Y P T L + G TLF ++R+D ++L Sbjct: 1 MIGYVRGIVTHLFKESCYVDVHGVGYRVYVPTTTRQQLIE-GHEATLFTYLNVREDAMQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ + + F+LL SV G+G +V +G+LS +T ++I + + ++PGI K Sbjct: 60 YGFWTEEEYELFILLISVSGIGPKVGLGILSGMTPEAFKLAVINGQVQQLTKLPGIGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K ++ + + + + AI ALV+LGY + Sbjct: 120 AERLVLELKDKLAKMTHISTESSAVIQPIGVTASGATG---EAIEALVSLGYSERDVADI 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V S+ + D S++I+++L + Sbjct: 177 VESL---DDGKRDVSELIKVSLIEL 198 >gi|210615646|ref|ZP_03290692.1| hypothetical protein CLONEX_02910 [Clostridium nexile DSM 1787] gi|210150189|gb|EEA81198.1| hypothetical protein CLONEX_02910 [Clostridium nexile DSM 1787] Length = 203 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 108/205 (52%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + + ED +++DV G+ Y I+ P +++ L IG+ + ++R+D ++L Sbjct: 1 MISYIRGELSAIEEDKIIVDVNGIGYGIFMPGQSMGMLPPIGEEVKIHTYLNVREDAMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ D + F L+ V G+G + + +LS+++ +L +++ ++K I+ PGI K Sbjct: 61 FGFLTRDDLKIFKLVIGVSGIGPKGGLSILSQLSPDDLRFAVLANDAKAISAAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK K + + S + + A+ AL LGYG ++ A Sbjct: 121 AEKLIIELKDKLS--VEDILEKNSETVEYAGVADTANEVQAEAVQALTALGYGSTESMKA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V E+ + +++ AL+ + Sbjct: 179 VKKVTVTEETTVE--DVLKQALKYM 201 >gi|94501014|ref|ZP_01307538.1| Holliday junction DNA helicase motor protein [Oceanobacter sp. RED65] gi|94426761|gb|EAT11745.1| Holliday junction DNA helicase motor protein [Oceanobacter sp. RED65] Length = 203 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 97/205 (47%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G + +LI+V G+ Y ++ P+ T+ L ++G TL +R+D L Sbjct: 1 MIGRISGTLLEKLPPELLIEVNGLGYEVHAPMTTIYALPEVGQGVTLHTHFVVREDAQIL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F L V GVG ++A+ +LS I V S+ +S + +IPGI K Sbjct: 61 YGFSDKQQRALFRALIKVSGVGPKLALAILSGIETDTFVRSVHDGDSATLVRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+K + V D+ + S + A AL+ LGY A Sbjct: 121 AERLIVEMKDRLKEWQ--VDSDLPLMAAANPAPASQDQWIQEAEGALIALGYKPT---EA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 ++ ++ + +IRLAL+ + Sbjct: 176 AKAIAAIKEPVNGSEDLIRLALKGM 200 >gi|325068881|ref|ZP_08127554.1| Holliday junction DNA helicase subunit RuvA [Actinomyces oris K20] Length = 217 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 54/212 (25%), Positives = 98/212 (46%), Gaps = 8/212 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +I+ GV I TLS L ++G+ + E +R+D + L Sbjct: 1 MIASLRGTVLSVGLTSAVIETGGVGMSIQATPTTLSGL-RVGEEALVHTEMVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L S +GVGA++A+ +L+ T L +I Q+ + ++PG+ K Sbjct: 60 FGFADTDERDSFRTLMSAKGVGAKLALAMLAVHTPNALRRAIASQDVAALTRVPGLGPKG 119 Query: 121 ASRIMTELKGKAISLS----SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ ++ K ++ + P + ++ALV LG+ + Sbjct: 120 AQRVILDVADKLGPVTGDDLGAAGTTAQTAPGMEVVAAGGPEPHADVVAALVQLGWNEAS 179 Query: 177 ATTAVVSVLKKEKNI---ADDSQIIRLALRAI 205 A AV SV + D + ++R +LR + Sbjct: 180 ARQAVASVTADAADGGQEPDMAAVLRASLRWL 211 >gi|294341429|emb|CAZ89846.1| Holliday junction ATP-dependent DNA helicase ruvA [Thiomonas sp. 3As] Length = 190 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 97/206 (47%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + +L+DV GV Y + P+ TL L G TL + T +R+D L Sbjct: 1 MIGRLHGTLLDKSPPQILLDVGGVGYEVDVPMSTLYDLPAAGHAVTLLIHTVIREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L + G+G R+A+ VLS ++ +E+ +++ Q++ ++PGI K Sbjct: 61 YGFATAAERSTFRELLKISGIGPRIALAVLSGLSVSEIAQAVTQQDAVRFTRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R +++ + + A + + AL+ LGY + +A A Sbjct: 121 AER-------------LLLELKGKLGADLGSAATAAAGSASDVLQALIALGYSEREAAAA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 ++ IR AL++++ Sbjct: 168 AKAL----PEGCSVDDGIRQALKSLA 189 >gi|225025938|ref|ZP_03715130.1| hypothetical protein EUBHAL_00174 [Eubacterium hallii DSM 3353] gi|224956724|gb|EEG37933.1| hypothetical protein EUBHAL_00174 [Eubacterium hallii DSM 3353] Length = 230 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 62/203 (30%), Positives = 102/203 (50%), Gaps = 5/203 (2%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 I IKG + +D V+I+ G+ Y I P R L + G+ L ++R+DQ+ LF Sbjct: 28 ISYIKGTVAYKGKDSVVIENHGIGYQIKVPSRVLEGVNS-GEEAMLHTYLYVREDQLALF 86 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF S + + F +L + G+G + A+ VLS ++ +L ++ +++K IA+ PGI K A Sbjct: 87 GFSSIQELETFQILLGISGIGPKAALSVLSTMSVEDLYYAVFSEDAKSIAKTPGIGPKGA 146 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 R++ ELK K ++ + + + ALV LGY +A AV Sbjct: 147 KRMIIELKDKLN--LEALESVSGAEEAAPQSSFTEGDSIADTVQALVALGYSNGEAYRAV 204 Query: 182 VSVLKKEKNIADDSQIIRLALRA 204 SV + EK D Q+++ AL+ Sbjct: 205 HSVPEAEK--LDAEQLLKEALKK 225 >gi|218128788|ref|ZP_03457592.1| hypothetical protein BACEGG_00360 [Bacteroides eggerthii DSM 20697] gi|317475376|ref|ZP_07934640.1| Holliday junction DNA helicase RuvA [Bacteroides eggerthii 1_2_48FAA] gi|217989016|gb|EEC55332.1| hypothetical protein BACEGG_00360 [Bacteroides eggerthii DSM 20697] gi|316908404|gb|EFV30094.1| Holliday junction DNA helicase RuvA [Bacteroides eggerthii 1_2_48FAA] Length = 198 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I L +ID G+ Y + + T + + + C L++ +R+D L Sbjct: 1 MIEYIKGEIAELSPANAIIDCNGLGYAVNISLNTYAAI-QGKKECKLYIYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ +R+ F+LL SV G+G A +LS ++ +EL+ +I N+ ++ + GI +K Sbjct: 60 YGFIDKQERELFLLLISVSGIGGNTARMILSALSPSELINAISTGNANLLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + A + AI+AL LG+ Q + Sbjct: 120 AQRVIVDLKDKIK-----PGGIAAGTTDISAFTAANAQVQEEAIAALTMLGFAQAPSQKV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+++LK++ A Q+I+LAL+ + Sbjct: 175 VMAILKEDAG-APVEQVIKLALKRL 198 >gi|315651980|ref|ZP_07904982.1| Holliday junction ATP-dependent DNA helicase RuvA [Eubacterium saburreum DSM 3986] gi|315485809|gb|EFU76189.1| Holliday junction ATP-dependent DNA helicase RuvA [Eubacterium saburreum DSM 3986] Length = 194 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 96/205 (46%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + + V ++ G+ Y I+ R + L K G + + +D L Sbjct: 1 MIAYIRGIVTEKNVNTVTVECSGIGYEIFATGRDIDKLSK-GSEVLIHTYLKISEDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ D F L V GVG + A+ +++ + + +L +I+ ++ K I G+ KI Sbjct: 60 YGFLNKDDMVMFKKLIIVNGVGPKAALSIMNTLNSFDLKIAIVTEDYKAICAAVGVGSKI 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELK K + +A S S A+ ALV+LGY +A A Sbjct: 120 AKKIILELKEKVK---------PDDIGTLEAADTSDNSVVSEALEALVSLGYSNSEAYKA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + KN I++LAL+ + Sbjct: 171 IKEI--EVKNTDTTEDILKLALKKM 193 >gi|313673192|ref|YP_004051303.1| holliday junction DNA helicase ruva [Calditerrivibrio nitroreducens DSM 19672] gi|312939948|gb|ADR19140.1| Holliday junction DNA helicase RuvA [Calditerrivibrio nitroreducens DSM 19672] Length = 192 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 105/206 (50%), Gaps = 16/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K++G + +Y+++DV G+ + I + + L + + T +R+D I + Sbjct: 1 MIAKLRGKLHEKKPNYIILDVNGIFFEISISLNCFTSLPDLNSELIISTYTIVREDGISI 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+D +++ F+LL SV VG ++A+ +LS +L +I ++ +IA PG+ K Sbjct: 61 YGFLNDDEKRLFLLLNSVSKVGPKLALSILSTCEIVKLKSAIKNRDINLIATAPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL+ K V+ D ++ + ISALVNLGY + A +A Sbjct: 121 AERIILELRDKIEEFEVVMDADTGGLD-------------DDIISALVNLGYKKVDALSA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + + +R AL+ ++ Sbjct: 168 LKRL---DDRYKTFEERLREALKLLN 190 >gi|157803866|ref|YP_001492415.1| Holliday junction DNA helicase RuvA [Rickettsia canadensis str. McKiel] gi|166200255|sp|A8EZ47|RUVA_RICCK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|157785129|gb|ABV73630.1| Holliday junction DNA helicase motor protein [Rickettsia canadensis str. McKiel] Length = 204 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 70/203 (34%), Positives = 117/203 (57%), Gaps = 7/203 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G + +DYV+IDV GV Y++Y +TL L + G+F LF+ETH+R++ I L Sbjct: 1 MIGKLSGKADSQGDDYVIIDVNGVGYLVYASGKTLDKLVE-GEFYKLFIETHVREEHIHL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ +F LLQSV G+G R+A+ +LS +T ++ ++ ++ + I G+ K+ Sbjct: 60 YGFLTLEEKNFFNLLQSVNGIGTRMALSILSNLTPDDIQIAVNNEDKNIFKAISGVGAKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K +SS S K + S + AL+NLG+ + +A Sbjct: 120 AERIVLELKDKVTKISSSSAIKDSLNIKNITPVTS-----NEVMKALINLGFSRFEAQNV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V ++ + I ++I+ AL+ Sbjct: 175 VQGIITQNPKI-SIDELIKTALK 196 >gi|300856546|ref|YP_003781530.1| Holliday junction DNA helicase [Clostridium ljungdahlii DSM 13528] gi|300436661|gb|ADK16428.1| Holliday junction DNA helicase [Clostridium ljungdahlii DSM 13528] Length = 198 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 102/205 (49%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +G+ +DY++++ G+ Y I T++ K+G+ L+++ +R+D I L Sbjct: 1 MYEYIKGIYKGVNKDYIVVENNGIGYKINTSGSTIAKTPKVGENIVLYLQQIVREDFIGL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + F LL ++ G+GAR A+ +LS L +II ++ K + + PGI K Sbjct: 61 YGFLTKEELSMFNLLLTINGIGARAALSILSISDVNNLKYAIISEDEKNLVRAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K +D + + AL+ LGY + + A Sbjct: 121 AQRIILELKDKIDVGELTNSED-------DIDNINATQNTSEVLEALIALGYSEKEGNKA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + S+ K + +I+ AL+ + Sbjct: 174 LASIDKT--KESSTEDMIKKALKFL 196 >gi|21232455|ref|NP_638372.1| Holliday junction DNA helicase RuvA [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767461|ref|YP_242223.1| Holliday junction DNA helicase RuvA [Xanthomonas campestris pv. campestris str. 8004] gi|188990567|ref|YP_001902577.1| Holliday junction DNA helicase RuvA [Xanthomonas campestris pv. campestris str. B100] gi|325921870|ref|ZP_08183684.1| Holliday junction DNA helicase RuvA [Xanthomonas gardneri ATCC 19865] gi|24212373|sp|Q8P6E5|RUVA_XANCP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|81306559|sp|Q4UXM0|RUVA_XANC8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560138|sp|B0RPY4|RUVA_XANCB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|21114237|gb|AAM42296.1| holliday junction binding protein, DNA helicase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572793|gb|AAY48203.1| holliday junction binding protein, DNA helicase [Xanthomonas campestris pv. campestris str. 8004] gi|167732327|emb|CAP50519.1| Holliday junction DNA helicase RuvA [Xanthomonas campestris pv. campestris] gi|325547651|gb|EGD18691.1| Holliday junction DNA helicase RuvA [Xanthomonas gardneri ATCC 19865] Length = 194 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 61/204 (29%), Positives = 95/204 (46%), Gaps = 13/204 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +++IDV GV Y + P+ T L +G LF ++D + L Sbjct: 1 MIGRLRGILAYKQPPWLVIDVGGVGYELEAPMSTFYDLPDVGRDVILFTHYAQKEDSVSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + +R+ F +Q V G+GA++A+ VLS +T E I + + +IPGI K Sbjct: 61 YGFLREGERRLFRDVQKVTGIGAKIALAVLSGVTVDEFARLITSGDITALTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ +A SS P A AL LGY +A Sbjct: 121 AERMVVELRDRAADFSSGAP----------ITGQLGPDAVSEATVALQQLGYKPAEAARM 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + +A IR AL+A Sbjct: 171 AREAGAEGDEVATV---IRKALQA 191 >gi|86359072|ref|YP_470964.1| Holliday junction DNA helicase motor protein [Rhizobium etli CFN 42] gi|123751944|sp|Q2K4J9|RUVA_RHIEC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|86283174|gb|ABC92237.1| holliday junction DNA helicase protein [Rhizobium etli CFN 42] Length = 204 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 96/206 (46%), Positives = 143/206 (69%), Gaps = 3/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + EDYVL+DVQGVCY+ YC RTLS LG G+ C LF+ET++R+DQ++L Sbjct: 1 MIGKLKGTIDEIGEDYVLVDVQGVCYVAYCSARTLSKLGSAGEACVLFIETYVREDQLKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF++ L+R+WF LLQSVQGVGA+VA+ VLS +T EL +I LQ+ +++ PG+ K+ Sbjct: 61 FGFMTALEREWFNLLQSVQGVGAKVALAVLSTLTPGELANAIALQDRAAVSRAPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++TELK +A + + + ++ K + + +A+SAL NLGY +DQA A Sbjct: 121 AMRLVTELKNRAPAYAG---EAINIALKRELGEGVAAAPVADAVSALTNLGYSRDQAANA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + +K AD +++IRL L+ ++ Sbjct: 178 VAAAMKTAGEGADSAKLIRLGLKELA 203 >gi|160942948|ref|ZP_02090187.1| hypothetical protein FAEPRAM212_00425 [Faecalibacterium prausnitzii M21/2] gi|158445849|gb|EDP22852.1| hypothetical protein FAEPRAM212_00425 [Faecalibacterium prausnitzii M21/2] Length = 203 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 93/206 (45%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G I + V++ GV Y CP L +G TL+ + ++ + L Sbjct: 1 MIYCLTGKIVKKSLNAVVLSCGGVGYYTQCPASVAGALPGVGQETTLYTVMSVTENDVSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ + F +L +V GVG +V + +LS + + +I + K G+ K+ Sbjct: 61 YGFATEEQQACFEMLTAVSGVGPKVGLAILSVMEPQRVALAISAGDHKAFKAASGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K V A + AI+ALV+LGY Q +A A Sbjct: 121 AQRIVLELKDKVAK--GFVDGISLEDVAGSAADTPATQSSAQAIAALVSLGYSQSEAALA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + +II+LALR+++ Sbjct: 179 IAKIDAALP----VEEIIKLALRSMA 200 >gi|295103887|emb|CBL01431.1| Holliday junction DNA helicase subunit RuvA [Faecalibacterium prausnitzii SL3/3] Length = 203 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 93/206 (45%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G I + V++ GV Y CP L +G TL+ + ++ + L Sbjct: 1 MIYCLTGKIVKKSLNAVVLSCGGVGYYTQCPASVAGALPGVGQETTLYTVMSVTENDVSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ + F +L +V GVG +V + +LS + + +I + K G+ K+ Sbjct: 61 YGFATEEQQACFEMLTAVSGVGPKVGLAILSVMEPQRVALAISAGDHKAFKAASGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K V A + AI+ALV+LGY Q +A A Sbjct: 121 AQRIVLELKDKVAK--GFVDGISLEDVAGTAADTPATQSSAQAIAALVSLGYSQSEAALA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + +II+LALR+++ Sbjct: 179 IAKIDATLP----VEEIIKLALRSMA 200 >gi|294628363|ref|ZP_06706923.1| Holliday junction DNA helicase RuvA [Streptomyces sp. e14] gi|292831696|gb|EFF90045.1| Holliday junction DNA helicase RuvA [Streptomyces sp. e14] Length = 201 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 59/209 (28%), Positives = 96/209 (45%), Gaps = 14/209 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L D +I+V GV + C TLS L +IG L +R+D + L Sbjct: 1 MIAFVSGAVAALAPDTAVIEVGGVGMAVQCTPNTLSTL-RIGQPAKLHTSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ T L ++ + K + +PGI K Sbjct: 60 YGFADDDERQVFELLQTASGVGPRLAQAMLAVHTPDALRRAVATGDEKALTAVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK + + V + +AL+ LGY +A A Sbjct: 120 AQKLLLELKDRLG----------APVGAPAVGAPVTQGWRDQLHAALIGLGYATREADEA 169 Query: 181 VVSV---LKKEKNIADDSQIIRLALRAIS 206 V +V + Q+++ AL+ ++ Sbjct: 170 VAAVTPQAEAAGGAPQVGQLLKAALQTLN 198 >gi|194333233|ref|YP_002015093.1| Holliday junction DNA helicase RuvA [Prosthecochloris aestuarii DSM 271] gi|229560116|sp|B4S4U8|RUVA_PROA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|194311051|gb|ACF45446.1| Holliday junction DNA helicase RuvA [Prosthecochloris aestuarii DSM 271] Length = 200 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G + D ++DV GV Y + T L GD L H+++D ++L Sbjct: 1 MYAYFRGELISSSRDNAIVDVGGVAYRLLISNSTYRQLPSSGDQVKLLAHLHVKEDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ + +RQ F+LL S+ GVG ++A+ +LS + E+ E+I+ + + I G+ K Sbjct: 61 YGFIEEEERQLFLLLLSISGVGPKLALAILSGLPVEEIQEAIMANKPETLFGISGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ EL+ + + L + S+ S + +A+ AL+ LG+ + A A Sbjct: 121 AARIILELRDRILKLQQTRPGKTAGAG-------SVASLSEDALQALMTLGFSRASAQQA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V L I+R AL+ I Sbjct: 174 VTRALLS-AENPGVEDIVREALQNI 197 >gi|150016408|ref|YP_001308662.1| Holliday junction DNA helicase RuvA [Clostridium beijerinckii NCIMB 8052] gi|189045748|sp|A6LTM6|RUVA_CLOB8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|149902873|gb|ABR33706.1| Holliday junction DNA helicase RuvA [Clostridium beijerinckii NCIMB 8052] Length = 198 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 104/205 (50%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG G+ +DYV+++ G+ Y I+ T+S + K G+ L++E +R+D I L Sbjct: 1 MYEYIKGKYIGINKDYVIVENSGIGYKIFTSGATMSSMPKNGEEIMLYLEQIVREDFIGL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S + + F LL +V GVG + A+ +LS L +I++ + K I + GI K Sbjct: 61 YGFDSKEELEMFKLLLTVSGVGPKAALSLLSISRVNNLKYAIMIGDEKHICRGVGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ E+K K + + + A+SAL+ LGY + +A + Sbjct: 121 AARIILEIKDKLK-----PDELVDSSLEIDTKDNENVMALSEALSALIALGYSEKEAESV 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + K + II+ AL+A+ Sbjct: 176 LKKIDKND----SVENIIKNALKAL 196 >gi|34580551|ref|ZP_00142031.1| holliday junction DNA helicase RuvA [Rickettsia sibirica 246] gi|28261936|gb|EAA25440.1| holliday junction DNA helicase RuvA [Rickettsia sibirica 246] Length = 203 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 71/203 (34%), Positives = 121/203 (59%), Gaps = 6/203 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G ++ +DYV+IDV GV Y++Y +TL L + G+F LF+ETH+R++ I L Sbjct: 1 MIGQLSGKVDAQGDDYVIIDVNGVGYLVYASGKTLGKLAE-GEFYKLFIETHVREEHIHL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ +F LLQSV G+G R+A+ +LS +T +++ ++ ++ + I G+ K+ Sbjct: 60 YGFLALEEKIFFNLLQSVNGIGTRMALFILSSLTPSDIQIAVNNEDKNIFKAISGVGAKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELKGK +SS +N + + I ALVNLG+ + +A A Sbjct: 120 AERIVLELKGKVAKISSGSAIIKESLNIKNITPVASN----EVIKALVNLGFSRFEAQNA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V ++ + I ++I+ AL+ Sbjct: 176 VQGIITQNPEI-SIDELIKTALK 197 >gi|261368084|ref|ZP_05980967.1| holliday junction DNA helicase RuvA [Subdoligranulum variabile DSM 15176] gi|282570074|gb|EFB75609.1| holliday junction DNA helicase RuvA [Subdoligranulum variabile DSM 15176] Length = 201 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 90/206 (43%), Gaps = 8/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G I D +I GV Y + P T L G T++ ++ ++ + L Sbjct: 1 MIYCLTGKILKKTLDTAVISCGGVGYAVQIPATTGEALPAPGQEGTVYTVMNVSENDVSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ R F +L +V GVG + + +LS ++ ++ + + K + G+ K+ Sbjct: 61 YGFATEEQRDCFKMLTAVSGVGPKAGLAILSVMSPEKIALAASSGDHKAFTKASGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI ELK K D + S A++ALV+LGY A A Sbjct: 121 AQRITLELKDKVGK----GLADGTGFGGADLSAPMPSSAPAQAVAALVSLGYTPSDAAAA 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V V II++ALR++S Sbjct: 177 VARV----DETLSVQDIIKVALRSLS 198 >gi|312897339|ref|ZP_07756765.1| Holliday junction DNA helicase RuvA [Megasphaera micronuciformis F0359] gi|310621557|gb|EFQ05091.1| Holliday junction DNA helicase RuvA [Megasphaera micronuciformis F0359] Length = 199 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG +KG +E ++ V IDV GV Y +Y P+ TL+ L +G+ L+ ++R+D I L Sbjct: 1 MIGYVKGTVECIFASSVFIDVHGVGYRVYAPVSTLAHL-NVGEESLLYTYMNVREDAIVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + FMLL V GVG +VA G+LS ++ ++ ++ ++PGI K Sbjct: 60 YGFLTQDEYDLFMLLIGVNGVGPKVANGILSATGTDSFRAAVANKDIGLLTKMPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL+ K S +++ + +AL LGY + + Sbjct: 120 AERIVLELQDKVG------TPVSSGESEKTPEPSPIEGIGAEVTAALAGLGYSEREIEPI 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + K+ +++ LRA+ Sbjct: 174 IAREAKEHD---SVESLLKACLRAL 195 >gi|58040113|ref|YP_192077.1| Holliday junction DNA helicase RuvA [Gluconobacter oxydans 621H] gi|81351699|sp|Q5FQC5|RUVA_GLUOX RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|58002527|gb|AAW61421.1| Holliday junction DNA helicase RuvA [Gluconobacter oxydans 621H] Length = 200 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 109/206 (52%), Gaps = 7/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + + + ++DV GV Y++ RTL+ L + + +ET +R+D I+L Sbjct: 1 MIGQLTGLVGQIEGERCIVDVNGVGYVVSASTRTLAVLPQPPSVARVLIETIVREDAIQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R WF LL +VQ VGA+VA+ +LS EL+ +I + + + G+ ++ Sbjct: 61 FGFATTDERDWFRLLTTVQSVGAKVALAILSANNPGELLLAINAGDKGSLTRAAGVGPRL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI++EL+ K + + I S PS +A+ AL LG+ + +A Sbjct: 121 ADRILSELRNKVAKMPGGGGTVSA------PGIVSGPSVENDALLALAGLGFRRAEAWPV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + VL + A IRL+L+ ++ Sbjct: 175 LSKVLAEN-ENATLDLAIRLSLKDLA 199 >gi|166712990|ref|ZP_02244197.1| Holliday junction DNA helicase motor protein [Xanthomonas oryzae pv. oryzicola BLS256] gi|289661899|ref|ZP_06483480.1| Holliday junction DNA helicase RuvA [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289669612|ref|ZP_06490687.1| Holliday junction DNA helicase RuvA [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 194 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 61/204 (29%), Positives = 95/204 (46%), Gaps = 13/204 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +++IDV GV Y + P+ T L +G LF ++D + L Sbjct: 1 MIGRLRGILAYKQPPWLVIDVGGVGYELEAPMSTFYDLPDVGRDVILFTHYAQKEDSVSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + +R+ F +Q V G+GA++A+ VLS +T E I + + +IPGI K Sbjct: 61 YGFLREGERRLFRDVQKVTGIGAKIALAVLSGVTVDEFARLITSGDITALTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ +A SS P A AL LGY +A Sbjct: 121 AERMVVELRDRAADFSSGAP----------ITGQLGPDAISEATVALQQLGYKPAEAARM 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + +A IR AL+A Sbjct: 171 AREAGAEGDEVATV---IRKALQA 191 >gi|322807372|emb|CBZ04946.1| holliday junction DNA helicase RuvA [Clostridium botulinum H04402 065] Length = 197 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 105/205 (51%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +Y+DY++I+ + Y IY T++ L IG+ L+ E +R+D I + Sbjct: 1 MYEYIKGKYIDMYKDYIVIENNNIGYKIYTSGSTMAKLPSIGENIMLYTEQIVREDFIGV 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + F LL ++ GVGA+ ++ +LS + L +I + + K I + PGI K Sbjct: 61 YGFLTKDELSMFKLLLTINGVGAKASLSLLSISNVSTLKYAIKVGDEKTITRAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + +++ + + + A++ALV LGY + +A Sbjct: 121 AQRIILELKDKIE------IDVLEENDEQTINKVTDDKKVLEAVAALVTLGYSEKEANKV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + S K QII+ AL+ + Sbjct: 175 INSCDKNN----SLEQIIKEALKYL 195 >gi|167764704|ref|ZP_02436825.1| hypothetical protein BACSTE_03094 [Bacteroides stercoris ATCC 43183] gi|167697373|gb|EDS13952.1| hypothetical protein BACSTE_03094 [Bacteroides stercoris ATCC 43183] Length = 200 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 103/205 (50%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I L ID G+ Y + + T + + + C L++ +R+D L Sbjct: 1 MIEYIKGEIAELSPASATIDCNGLGYAVNISLNTYAAI-QGKKSCKLYIYEAIREDAYIL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F+LL SV G+G A +LS ++ +EL+ I +N+ ++ + GI +K Sbjct: 60 YGFADKQERELFLLLISVSGIGGNTARMILSALSPSELINVISTENANLLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + + A + A++AL LG+ Q + Sbjct: 120 AQRVIVDLKDKIKTCGMASG---AVDITGPAFTAANAQVQEEAVAALTMLGFAQAPSQKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++LK++ N A Q+I+LAL+ + Sbjct: 177 VTAILKEDAN-APVEQVIKLALKRL 200 >gi|114765389|ref|ZP_01444504.1| Holliday junction DNA helicase motor protein [Pelagibaca bermudensis HTCC2601] gi|114542232|gb|EAU45262.1| Holliday junction DNA helicase motor protein [Roseovarius sp. HTCC2601] Length = 224 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 69/222 (31%), Positives = 113/222 (50%), Gaps = 17/222 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G IE ED++LIDV+GV Y++YC R L+ L G+ L+ + +R+D ++L Sbjct: 1 MIGRIAGRIEYKGEDHLLIDVRGVGYVVYCSDRVLAGLPGPGEAAALYTDLMVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++++WF LL +VQGVGA+ ++ +L + + +I L + I GI K Sbjct: 61 YGFPTLVEKEWFRLLMTVQGVGAKASLAILGTLGPDGVSRAIALGDGTAIKAAKGIGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS----------------MPSFAINAI 164 A R++ ELK KA + ++ + + S A+ Sbjct: 121 AQRVVNELKDKAPMVMAMGAGPTASPGDDVLEDPSPAPAARRAPAPRPAPAAAPAQSEAL 180 Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 SAL NLGY +A AV A +++IR AL+ ++ Sbjct: 181 SALSNLGYAPGEAAGAVAQAAGDLPE-ATTAELIRAALKLLA 221 >gi|327403822|ref|YP_004344660.1| Holliday junction DNA helicase subunit RuvA [Fluviicola taffensis DSM 16823] gi|327319330|gb|AEA43822.1| Holliday junction DNA helicase subunit RuvA [Fluviicola taffensis DSM 16823] Length = 192 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 97/205 (47%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + ++I+ GV Y + + T S + + + + +R+D L Sbjct: 1 MITHLNGRLIEKNPTNLIIECGGVGYFVKISLNTFSAISST-ESVKVLTQQIIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L SV G+G A+ +LS ++ +E+ +I ++ + I I GI K Sbjct: 60 YGFATSEERDIFNFLLSVSGIGPNTAILMLSSMSPSEIANAIQTEDVRSIQAIKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + + ++ N + +A++AL++LG+ + A A Sbjct: 120 AQRVIIDLKDKMLKVEWTESTNIFAGN---------NTNRFDALTALISLGFDKKNAEKA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + ++ +I+ AL+ + Sbjct: 171 IEKIATGDE---SVEDLIKGALKIL 192 >gi|302550160|ref|ZP_07302502.1| Holliday junction DNA helicase RuvA [Streptomyces viridochromogenes DSM 40736] gi|302467778|gb|EFL30871.1| Holliday junction DNA helicase RuvA [Streptomyces viridochromogenes DSM 40736] Length = 201 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 56/209 (26%), Positives = 96/209 (45%), Gaps = 14/209 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L D +++V GV + C TLS L ++G L +R+D + L Sbjct: 1 MIAFVSGTVAALAPDAAVVEVGGVGMAVQCTPNTLSTL-RMGQPAKLHTSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ T L ++ + K + +PGI K Sbjct: 60 YGFADDDERQVFELLQTASGVGPRLAQAMLAVHTPDALRRAVATGDEKALTAVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK + + + +AL+ LGY +A A Sbjct: 120 AQKLLLELKDRLGE----------PIGAPAVGAPVSNGWRDQLHAALIGLGYATREADEA 169 Query: 181 VVSV---LKKEKNIADDSQIIRLALRAIS 206 V +V + + Q+++ AL+ ++ Sbjct: 170 VAAVTPQAEAVEGTPQVGQLLKAALQTLN 198 >gi|299148028|ref|ZP_07041091.1| holliday junction DNA helicase RuvA [Bacteroides sp. 3_1_23] gi|298514211|gb|EFI38097.1| holliday junction DNA helicase RuvA [Bacteroides sp. 3_1_23] Length = 200 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + L +ID GV Y + T S + + C L++ +R+D L Sbjct: 1 MIEYIRGELAELSPATAVIDCNGVGYAANISLNTYSAI-QGKKSCKLYIYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F+LL SV G+G A +LS ++ ELV I +N+ ++ + GI +K Sbjct: 60 YGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + S Q + A+SAL LG+ + Sbjct: 120 AQRVIVDLKDKIKIMGMSAAGGASAGLLLQ---PANAEVQEEAVSALTMLGFAAAPSQKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+++LK+E + A ++I+LAL+ + Sbjct: 177 VLAILKEEPD-APVEKVIKLALKRL 200 >gi|291286413|ref|YP_003503229.1| Holliday junction DNA helicase RuvA [Denitrovibrio acetiphilus DSM 12809] gi|290883573|gb|ADD67273.1| Holliday junction DNA helicase RuvA [Denitrovibrio acetiphilus DSM 12809] Length = 192 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 51/206 (24%), Positives = 96/206 (46%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + +ID V + + T L + G ++ MR+D + L Sbjct: 1 MIYSVRGILIEKNPANAVIDTGAVAFEMSISASTYQQLPETGQKAHVYTHFVMREDGVYL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +++ F+LL ++ VG ++A+ +LS + + + +++ +I+ IPGI K Sbjct: 61 YGFSKMEEKKLFLLLITISKVGPKLALAILSGMDVNKFMNAVMNSEIGLISTIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL+ K S+S + A + +SAL+NLGY + A Sbjct: 121 AERIVVELRDKFGSMSVSTGDEPVAGG------------AEDVVSALLNLGYSRADCQKA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + K + ++ + AL+ +S Sbjct: 169 VNKIYKTDSG---FEELFKGALKELS 191 >gi|153938510|ref|YP_001392349.1| Holliday junction DNA helicase RuvA [Clostridium botulinum F str. Langeland] gi|168179565|ref|ZP_02614229.1| holliday junction DNA helicase RuvA [Clostridium botulinum NCTC 2916] gi|170754638|ref|YP_001782706.1| Holliday junction DNA helicase RuvA [Clostridium botulinum B1 str. Okra] gi|226950500|ref|YP_002805591.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A2 str. Kyoto] gi|166230543|sp|A7GHT9|RUVA_CLOBL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560023|sp|B1IMF4|RUVA_CLOBK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254766953|sp|C1FKG2|RUVA_CLOBJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|152934406|gb|ABS39904.1| Holliday junction DNA helicase RuvA [Clostridium botulinum F str. Langeland] gi|169119850|gb|ACA43686.1| Holliday junction DNA helicase RuvA [Clostridium botulinum B1 str. Okra] gi|182669614|gb|EDT81590.1| holliday junction DNA helicase RuvA [Clostridium botulinum NCTC 2916] gi|226841819|gb|ACO84485.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A2 str. Kyoto] gi|295320341|gb|ADG00719.1| Holliday junction DNA helicase RuvA [Clostridium botulinum F str. 230613] Length = 197 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 105/205 (51%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +Y+DY++I+ + Y IY T++ L IG+ L+ E +R+D I + Sbjct: 1 MYEYIKGKYIDMYKDYIVIENNNIGYKIYTSGSTMAKLPSIGENIMLYTEQIVREDFIGV 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + F LL ++ GVGA+ ++ +LS + L +I + + K I + PGI K Sbjct: 61 YGFLTKDELSMFKLLLTINGVGAKASLSLLSISNVSTLKYAIKMGDEKTITRAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + +++ + + + A++ALV LGY + +A Sbjct: 121 AQRIILELKDKIE------IDILEEDDEQIINKVTDDKKVLEAVAALVTLGYSEKEANKV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + S K QII+ AL+ + Sbjct: 175 INSCDKNN----SLEQIIKEALKYL 195 >gi|318041282|ref|ZP_07973238.1| Holliday junction DNA helicase RuvA [Synechococcus sp. CB0101] Length = 220 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 53/215 (24%), Positives = 98/215 (45%), Gaps = 9/215 (4%) Query: 1 MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MIG ++G + ++ +L+ GV Y ++ P R LG+ G +L + +R+D Sbjct: 1 MIGWLQGQLADRWQQASRCGLLLVCGGVGYEVHLPRRQWERLGETGTELSLHIHQVIRED 60 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF S +R F L +V GVG ++A+G+L +++ ELV +I+ + +++ Q PG+ Sbjct: 61 AWTLYGFASRAERDLFRELVAVSGVGPQMALGLLGQLSCEELVRAIVQADLRLLTQAPGV 120 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVN----KEQAHICSMPSFAINAISALVNLGY 172 + A R+ EL+ + V + + + L LGY Sbjct: 121 GKRTAERLAVELRTRLQERYGSVANPEDTADLALPASGSAEALPSAVRDEVNLTLTALGY 180 Query: 173 GQDQATTAVVSVLKKEKN-IADDSQIIRLALRAIS 206 + A+ +V E++ +R LR +S Sbjct: 181 EALEINRALRAVATTEEDLGQGADAWLRECLRWLS 215 >gi|148381022|ref|YP_001255563.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A str. ATCC 3502] gi|153931785|ref|YP_001385393.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A str. ATCC 19397] gi|153936604|ref|YP_001388800.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A str. Hall] gi|166230541|sp|A7FY20|RUVA_CLOB1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230542|sp|A5I6F2|RUVA_CLOBH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|148290506|emb|CAL84634.1| holliday junction DNA helicase [Clostridium botulinum A str. ATCC 3502] gi|152927829|gb|ABS33329.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A str. ATCC 19397] gi|152932518|gb|ABS38017.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A str. Hall] Length = 197 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 105/205 (51%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +Y+DY++I+ + Y IY T++ L IG+ L+ E +R+D I + Sbjct: 1 MYEYIKGKYIDMYKDYIVIENNNIGYKIYTSGSTMAKLPSIGENIMLYTEQIVREDFIGV 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + F LL ++ GVGA+ A+ +LS + L +I + + K I + PGI K Sbjct: 61 YGFLTKDELSMFKLLLTINGVGAKAALSLLSISNVSTLKYAIKMGDEKTITRAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + +++ + + + A++ALV LGY + +A Sbjct: 121 AQRIILELKDKIE------IDILEEDDEQIINKVADDKKVLEAVAALVTLGYSEKEANKV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + S K QII+ AL+ + Sbjct: 175 INSCDKNN----SLEQIIKEALKYL 195 >gi|168181761|ref|ZP_02616425.1| Holliday junction DNA helicase RuvA [Clostridium botulinum Bf] gi|237796527|ref|YP_002864079.1| Holliday junction DNA helicase RuvA [Clostridium botulinum Ba4 str. 657] gi|259495636|sp|C3KTD3|RUVA_CLOB6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|182675197|gb|EDT87158.1| Holliday junction DNA helicase RuvA [Clostridium botulinum Bf] gi|229263209|gb|ACQ54242.1| Holliday junction DNA helicase RuvA [Clostridium botulinum Ba4 str. 657] Length = 197 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 105/205 (51%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +Y+DY++I+ + Y IY T++ L IG+ L+ E +R+D I + Sbjct: 1 MYEYIKGKYIDMYKDYIVIENNNIGYKIYTSGSTMAKLPSIGENIMLYTEQIVREDFIGV 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + F LL ++ GVGA+ A+ +LS + L +I + + K I + PGI K Sbjct: 61 YGFLTKDELSMFKLLLTINGVGAKAALSLLSISNVSTLKYAIKMGDEKTITRAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + +++ + + + A++AL+ LGY + +A Sbjct: 121 AQRIILELKDKIE------IDILEEDDEQTINKVTDDKKVLEAVAALITLGYSEKEANKV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + S K QII+ AL+ + Sbjct: 175 INSCDKNN----SLEQIIKEALKYL 195 >gi|319406256|emb|CBI79893.1| holliday junction DNA helicase RuvA [Bartonella sp. AR 15-3] Length = 214 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 81/207 (39%), Positives = 135/207 (65%), Gaps = 2/207 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG +E +++D++++DVQGV YII+ P R S L IG+ +LF+ETH+R++ IRL Sbjct: 1 MIGKLKGILEHIFDDHIILDVQGVGYIIFIPNRLHSSLPAIGESLSLFIETHVREEAIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++WF LLQ+V GVGA+VA+ +L ++ +EL ++I L ++ +I++ PG+ K+ Sbjct: 61 FGFATKSEQEWFCLLQNVPGVGAKVALAILGSLSVSELSQAITLNDTAMISRAPGVGKKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 + RI++ELK K + LS ++ + + +A+ AL+ LG+ D+ATTA Sbjct: 121 SERIVSELKSKTL-LSKEDNKNPALSSSLNFSSEEKHQPTHDALLALIKLGFDHDKATTA 179 Query: 181 VVSVLKKEKNIADDSQII-RLALRAIS 206 + S L K S ++ R +LR +S Sbjct: 180 LASALSALKGEMISSALLVRHSLRLLS 206 >gi|295094803|emb|CBK83894.1| Holliday junction DNA helicase subunit RuvA [Coprococcus sp. ART55/1] Length = 200 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 104/205 (50%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G +E ++Y++I+ G+ Y + + + L + + ++R+D+I L Sbjct: 1 MISYIRGALEIKGDNYIVIECGGIGYQLMVSGKFMEKLPPVHSEIKVSTYMYIREDEICL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F +L V GVG +VAM +LS +T EL ++I ++ K I++ GI K Sbjct: 61 FGFENADELNVFKILLGVSGVGPKVAMSLLSTLTVNELRLAVISEDVKAISKANGIGAKG 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ ELK K S+ + N A + N ISAL LGY +A A Sbjct: 121 ASRIILELKDKL----SMEDMIDAAYNDSVAVQNAAGDVRTNVISALTALGYSGVEAGRA 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V D+ Q+++ ALR + Sbjct: 177 VSRV--DGSADMDEEQLLKAALRFM 199 >gi|189502747|ref|YP_001958464.1| hypothetical protein Aasi_1446 [Candidatus Amoebophilus asiaticus 5a2] gi|229470527|sp|B3EU33|RUVA_AMOA5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189498188|gb|ACE06735.1| hypothetical protein Aasi_1446 [Candidatus Amoebophilus asiaticus 5a2] Length = 194 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 103/203 (50%), Gaps = 10/203 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G+I +++DV G+ Y + ++T L I C +F H+ QD L Sbjct: 1 MIAYIQGSITYKSPTQLIVDVGGIGYELQISLQTYDSLKDIAASCKIFTYLHITQDAHTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++Q F+ L SV G+G RVA+ +LS +T L ++I+ ++ + + GI K Sbjct: 61 YGFSTIEEKQCFLQLLSVNGIGPRVAITILSALTPEALQQAIMTHDTITLQAVKGIGQKA 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL+GK + +++ S + A++AL LG + A Sbjct: 121 AQRIILELQGKVGKVGNMLSLQPSG----------QEAIYQEALAALSKLGIHKSTAEKT 170 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V ++LK+ + +I+LAL+ Sbjct: 171 VAAILKEHQGEITVESLIKLALK 193 >gi|160892584|ref|ZP_02073374.1| hypothetical protein CLOL250_00113 [Clostridium sp. L2-50] gi|156865625|gb|EDO59056.1| hypothetical protein CLOL250_00113 [Clostridium sp. L2-50] Length = 200 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 107/205 (52%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G + E+Y++ID G+ Y I+ + L + G ++ ++R+D++ L Sbjct: 1 MIAYIAGALVSAGENYIVIDNHGMGYRIFVSGKFLERIPAYGTQIKVYTHMYIREDELTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ + F +L + GVG +VAM +L+ +T EL ++I +++K I++ G+ K Sbjct: 61 YGFHSEEELSVFRILIGISGVGPKVAMAILTALTIQELQLAVISEDAKTISKANGVGTKG 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ ELK K + + + A + A +AI ALVNLGY +A A Sbjct: 121 ASRIILELKDKLKMEDMMD----AAYEQSIAQNTQDVNAARDAILALVNLGYSNSEAALA 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + + D I++ AL+ + Sbjct: 177 VKKI--GDIGQMDTEAILKAALKKL 199 >gi|268608399|ref|ZP_06142126.1| Holliday junction DNA helicase RuvA [Ruminococcus flavefaciens FD-1] Length = 206 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 91/205 (44%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + + +I+ GV Y T++ LG++G L+ ++R+D + L Sbjct: 1 MIYSLKGKLTVKELGFAVIECGGVGYGCKTSYNTIASLGEVGSEAMLYTHLYVREDAVEL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F LL SV GVG + A+ +LS +T + + +SK + GI K Sbjct: 61 FGFATQQELSCFRLLISVSGVGPKAAISILSDVTPEKFAFLVASGDSKSFTRTKGIGAKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K S S + S A+ AL+ LGY Q + Sbjct: 121 AQRIVLELKDKISSESISGSVSGDAAAFAPSSAAPSDSV-SEALEALMVLGYTQGETAP- 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 +L K +I+ LR + Sbjct: 179 ---ILGKLDPSMSTQDLIKETLRLL 200 >gi|114566956|ref|YP_754110.1| Holliday junction resolvasome DNA-binding subunit [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122318040|sp|Q0AX15|RUVA_SYNWW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|114337891|gb|ABI68739.1| Holliday junction DNA helicase subunit RuvA [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 199 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 52/204 (25%), Positives = 94/204 (46%), Gaps = 12/204 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + D ++IDV GV Y + R L + G+ + + +++ +L Sbjct: 1 MIAFLKGAVFERRPDSIIIDVNGVGYEVNIHSRLFPRLPQRGEPILIHTFLQVLENEFKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL + + F L +V G+G++ A+ VLS + +I Q+ K + +IPG+ K Sbjct: 61 FGFLDQDELRLFKTLLTVSGIGSKGALAVLSTMEPLVFYRAIASQDEKTLVRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K L V + + AL LGY + + A Sbjct: 121 AQRMIFELQDKVPELKLVEVE------------KEQRPLLDELMEALEILGYSRSEVLPA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 ++ + + ++ + I+L L+A Sbjct: 169 IMDLNRNKQLGNIVEENIKLVLKA 192 >gi|187778348|ref|ZP_02994821.1| hypothetical protein CLOSPO_01940 [Clostridium sporogenes ATCC 15579] gi|187771973|gb|EDU35775.1| hypothetical protein CLOSPO_01940 [Clostridium sporogenes ATCC 15579] Length = 197 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 104/205 (50%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +Y+DY++I+ + Y IY T++ L IG+ L+ E +R+D I + Sbjct: 1 MYEYIKGKYIDMYKDYIVIENNNIGYKIYTSGSTMAKLPSIGENIMLYTEQIVREDFIGI 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + F LL ++ GVGA+ ++ +LS + L +I + + K I + PGI K Sbjct: 61 YGFLTKDELSMFKLLLTINGVGAKASLSLLSISNVSTLKYAIKMGDEKTITRAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + V D +NK + AI+ALV LGY + +A Sbjct: 121 AQRIILELKDKI-EIDIVEDDDEEIINKITDDKK-----VLEAIAALVTLGYSEKEANKV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + K QII+ AL+ + Sbjct: 175 INQCDKDN----SLEQIIKEALKYL 195 >gi|29347388|ref|NP_810891.1| Holliday junction DNA helicase RuvA [Bacteroides thetaiotaomicron VPI-5482] gi|253570551|ref|ZP_04847959.1| Holliday junction DNA helicase ruvA [Bacteroides sp. 1_1_6] gi|44888484|sp|Q8A6A7|RUVA_BACTN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|29339288|gb|AAO77085.1| Holliday junction DNA helicase ruvA [Bacteroides thetaiotaomicron VPI-5482] gi|251839500|gb|EES67583.1| Holliday junction DNA helicase ruvA [Bacteroides sp. 1_1_6] Length = 201 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 103/205 (50%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + L +ID GV Y + T S + + C L++ +R+D L Sbjct: 1 MIEYVRGELAELSPATAVIDCNGVGYAANISLNTYSAI-QGKKNCKLYIYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F+LL SV G+G A +LS ++ ELV I +N+ ++ + GI +K Sbjct: 60 YGFADKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANLLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K ++ + V + A++AL LG+ + Sbjct: 120 AQRVIVDLKDKIKTMGATVAGGSASAGMLLQSASVE--VQEEAVAALTMLGFAAAPSQKV 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+++LK+E + A ++I+LAL+ + Sbjct: 178 VLAILKEEPD-APVEKVIKLALKRL 201 >gi|260426467|ref|ZP_05780446.1| holliday junction DNA helicase RuvA [Citreicella sp. SE45] gi|260420959|gb|EEX14210.1| holliday junction DNA helicase RuvA [Citreicella sp. SE45] Length = 221 Score = 152 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 71/219 (32%), Positives = 115/219 (52%), Gaps = 14/219 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G IE ED+VLIDV+GV YI+YC R L+ L + G+ L+ + +R+D ++L Sbjct: 1 MIGRIAGRIEYKGEDHVLIDVRGVGYIVYCSDRVLASLPRPGEAAALYTDLLVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++++WF LL +VQGVGA+ ++ +L + + +I L ++ I GI K Sbjct: 61 YGFPTLVEKEWFRLLMTVQGVGAKASLAILGTLGPDGVSRAIALGDANAIKAARGIGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS-------------MPSFAINAISAL 167 R++ ELK KA + ++ ++ E A+SAL Sbjct: 121 GLRVVNELKDKAPMVMAMGAGTIASAGPEVIDDAPIPSAPAQAQAAPSSAPAQSEALSAL 180 Query: 168 VNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 NLGY +A AV + A +++IR ALR ++ Sbjct: 181 SNLGYAPGEAAAAVAQAAGEAP-TATTAELIRAALRLLA 218 >gi|298385152|ref|ZP_06994711.1| holliday junction DNA helicase RuvA [Bacteroides sp. 1_1_14] gi|298262296|gb|EFI05161.1| holliday junction DNA helicase RuvA [Bacteroides sp. 1_1_14] Length = 201 Score = 152 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 103/205 (50%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + L +ID GV Y + T S + + C L++ +R+D L Sbjct: 1 MIEYVRGELAELSPATAVIDCNGVGYAANISLNTYSAI-QGKKNCKLYIYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F+LL SV G+G A +LS ++ ELV I +N+ ++ + GI +K Sbjct: 60 YGFADKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANLLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K ++ + V + A++AL LG+ + Sbjct: 120 AQRVIVDLKDKIKTMGATVAGGSASAGMLLQSASVE--VQEEAVAALTMLGFAAAPSQKM 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+++LK+E + A ++I+LAL+ + Sbjct: 178 VLAILKEEPD-APVEKVIKLALKRL 201 >gi|241766520|ref|ZP_04764384.1| Holliday junction DNA helicase RuvA [Acidovorax delafieldii 2AN] gi|241363253|gb|EER58812.1| Holliday junction DNA helicase RuvA [Acidovorax delafieldii 2AN] Length = 190 Score = 152 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 96/206 (46%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G + VL+D GV Y + P+ T L +G+ +L + +R+D L Sbjct: 1 MIGKLTGTLLEKNPPEVLLDCHGVGYEVNVPMSTFYNLPAVGERVSLLTQFIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +RQ F L + GVG R A+ +LS + +L ++I LQ + + ++PGI K Sbjct: 61 YGFGTATERQAFRELIKISGVGPRTALSILSGMGVGDLAQAITLQEAGRLVKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R +++ + H + + ALV LGY +A A Sbjct: 121 AER-------------LLLELKGKLGAEMGTHAQVTSDAQADILQALVALGYNDKEAAAA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + ++ S I+LAL+A++ Sbjct: 168 LKALPADVG----VSDGIKLALKALA 189 >gi|227496221|ref|ZP_03926520.1| crossover junction endodeoxyribonuclease [Actinomyces urogenitalis DSM 15434] gi|226834252|gb|EEH66635.1| crossover junction endodeoxyribonuclease [Actinomyces urogenitalis DSM 15434] Length = 209 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 54/208 (25%), Positives = 103/208 (49%), Gaps = 8/208 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +I+V GV TL+ L ++G+ T+ E +R+D + L Sbjct: 1 MIASLRGTVLDISLTGAVIEVGGVGMAFQATPTTLAGL-RVGEEGTVHTELVVREDALTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +RQ F +L +GVGA++A+ +L+ T L +I Q+ + ++PG+ K Sbjct: 60 FGFADADERQCFRVLLGAKGVGAKLALAILAVHTPDALRRAIASQDVAALKRVPGLGPKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ++ K L+ + QA + + ++ALV LG+ + A A Sbjct: 120 AQRVIIDVGDKLGPLTGQDL----AAERPQAPAETGEEANPDVVAALVQLGWNEATARQA 175 Query: 181 VVSV---LKKEKNIADDSQIIRLALRAI 205 V +V +++ +++R +LR + Sbjct: 176 VGAVESGAQEQGEALSVPELLRASLRWL 203 >gi|160942099|ref|ZP_02089414.1| hypothetical protein CLOBOL_06987 [Clostridium bolteae ATCC BAA-613] gi|158434990|gb|EDP12757.1| hypothetical protein CLOBOL_06987 [Clostridium bolteae ATCC BAA-613] Length = 209 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 59/209 (28%), Positives = 105/209 (50%), Gaps = 5/209 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + + ED ++++ V I+ P+ L L +G T++ +R+D + L Sbjct: 1 MISYVKGPLMAIEEDVIVVEAGHVGLAIHVPVSLLPELPGMGKEVTVYTYFQVREDAMTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL DR F L V G+G + A+G+LS + +L +I+ ++ K +A+ PGI K Sbjct: 61 YGFLHSQDRDMFRQLLGVNGIGPKGALGILSVLRPDDLRLAIVSEDVKALAKAPGIGNKT 120 Query: 121 ASRIMTELKGKAIS---LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ +LK K L ++ A + + A A+ ALV LGY +A Sbjct: 121 AQRLILDLKDKISMDDVLGNMAGGAGMGAADTGASVAGLVEAAKEAVQALVALGYTNTEA 180 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 + AV V + + +++ +L+ +S Sbjct: 181 SRAVKQV--EVTDGMTSEDVLKASLKHLS 207 >gi|225023395|ref|ZP_03712587.1| hypothetical protein EIKCOROL_00253 [Eikenella corrodens ATCC 23834] gi|224943873|gb|EEG25082.1| hypothetical protein EIKCOROL_00253 [Eikenella corrodens ATCC 23834] Length = 193 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 14/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+ G + V+IDV GV Y ++T L +G+ +L+ + +R+D L Sbjct: 1 MISKLTGKLIEAIPPQVVIDVNGVAYEADVSMQTFYTLPPVGETVSLYTQLIVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L V G+GA+ A+G+LS + A EL +I ++ K ++ PGI K Sbjct: 61 FGFGSHSERNTFRQLIKVSGIGAKTALGILSAMNADELAAAIAAEDIKRLSSAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK + + V Q + + + +S L+ LGY + +A A Sbjct: 121 AERMVLELRGKLTTFNGVQTQLAAQAG----------DSSEDIVSTLLALGYNEKEARAA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + +RLAL+ + Sbjct: 171 TKGI----PADTEVGEGVRLALKNL 191 >gi|308070380|ref|YP_003871985.1| Holliday junction DNA helicase ruvA [Paenibacillus polymyxa E681] gi|305859659|gb|ADM71447.1| Holliday junction DNA helicase ruvA [Paenibacillus polymyxa E681] Length = 204 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G++ L +YV++DVQGV Y ++CP K +++ H+R+D I L Sbjct: 1 MIDFLRGSVAHLENEYVVLDVQGVGYRVFCPNP--YAFAKTEGPVVIYIHHHVREDAILL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++Q F L V G+G RVA+G+L T +V +I +N + ++PGI K Sbjct: 59 FGFATRDEQQLFRKLIDVSGIGPRVALGILGGGTPAHVVTAIYQENITFLTKLPGIGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + S+ + + E S+ A AL LGY + Sbjct: 119 AQRMILDLKDKLDGIGSL--GMATGLFAEPVVEEGEGSYWGEAREALKALGYTDAELDKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + K K +++ AL+ + Sbjct: 177 WSRMKKDAKPDESADILMKRALQLL 201 >gi|226311452|ref|YP_002771346.1| Holliday junction ATP-dependent DNA helicase [Brevibacillus brevis NBRC 100599] gi|254766947|sp|C0ZAN3|RUVA_BREBN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226094400|dbj|BAH42842.1| Holliday junction ATP-dependent DNA helicase [Brevibacillus brevis NBRC 100599] Length = 205 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + L +Y++I+ G+ Y ++CP + G+ LF H+R+D I L Sbjct: 1 MIDFVEGTLSYLDSEYIVIETGGIGYRLFCP-NPYQFVRYEGNKTKLFTHHHVREDAILL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+G + + +L+ T +LV ++ +N + + PGI K Sbjct: 60 YGFATRDERDLFRKLLDVSGIGPKGGLAILAAATPEQLVMAVQQENVTYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + + ++ + S A+ AL LGY + Sbjct: 120 AQRIILDLKDKLVGYTPSAILTVAAGDLTAGEQAV--SALNEALDALTALGYSDGELQKI 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 ++ +K K ++I+ L + Sbjct: 178 RNTLSEKSKEGDGVEKLIKQGLALL 202 >gi|212638555|ref|YP_002315075.1| Holliday junction DNA helicase RuvA [Anoxybacillus flavithermus WK1] gi|226725432|sp|B7GFM6|RUVA_ANOFW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|212560035|gb|ACJ33090.1| Holliday junction resolvasome, DNA-binding subunit [Anoxybacillus flavithermus WK1] Length = 197 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 51/205 (24%), Positives = 96/205 (46%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G ++ + +YV+I+ GV Y I+ P S ++ ++R+D + L Sbjct: 1 MIEFIRGYVDYVCPEYVVIENNGVGYQIFTP-NPFSFQMNKQQQIVVYTYQYVREDVLAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+G + A+ +L+ +LVE+I +N + + + PG+ K Sbjct: 60 YGFHTRQERMLFAKLLQVSGIGPKGALAILAAGQLEQLVEAIEAENDQFLCKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK ++ ++ + AI AL LGY + Sbjct: 120 ARQMILDLKGKLQAIVPDAFPNLFT------EPLEETNALSEAIEALKALGYADKEIQKV 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + ++ I+LAL+ + Sbjct: 174 VPMLRQE---RLSTEGYIKLALQKL 195 >gi|121595991|ref|YP_987887.1| Holliday junction DNA helicase RuvA [Acidovorax sp. JS42] gi|166229625|sp|A1WC36|RUVA_ACISJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|120608071|gb|ABM43811.1| Holliday junction DNA helicase RuvA [Acidovorax sp. JS42] Length = 190 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 95/206 (46%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G + VL+D GV Y + + T L +G+ +L + +R+D L Sbjct: 1 MIGKLTGTLLEKNPPEVLVDCHGVGYEVQVSMSTFYNLPAVGERVSLLTQFIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +RQ F L + GVG R A+ +LS + +L +++ LQ + + ++PGI K Sbjct: 61 YGFGTAQERQAFRELIKISGVGPRTALSILSGMGVADLAQAVSLQEAGRLVKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R +++ + + + AL+ LGY +A A Sbjct: 121 AER-------------LLLELKGKLGADVGVRAHAANDNQADILQALLALGYNDKEAAAA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + ++ S+ I+LAL+++S Sbjct: 168 LKALPADVG----VSEGIKLALKSLS 189 >gi|282850099|ref|ZP_06259481.1| Holliday junction DNA helicase RuvA [Veillonella parvula ATCC 17745] gi|282580288|gb|EFB85689.1| Holliday junction DNA helicase RuvA [Veillonella parvula ATCC 17745] Length = 202 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 111/205 (54%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + L+++ +DV GV Y +Y P T L + G TLF ++R+D ++L Sbjct: 1 MIGYVRGIVTHLFKESCYVDVHGVGYRVYVPTTTRQQLTE-GHEATLFTYLNVREDAMQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ + + F+LL SV G+G +V +G+LS +T +II + + ++PGI K Sbjct: 60 YGFWTEEEYELFILLISVSGIGPKVGLGILSGMTPEAFKLAIINGQVQQLTKLPGIGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K ++ + + + + + A AI ALV+LGY + Sbjct: 120 AERLVLELKDKIAKMTHISSESSATIQPIGV---AANGVAGEAIEALVSLGYLERDVADI 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V S+ + D S++I+++L + Sbjct: 177 VESL---DDGKRDVSELIKVSLIEL 198 >gi|313895598|ref|ZP_07829154.1| Holliday junction DNA helicase RuvA [Selenomonas sp. oral taxon 137 str. F0430] gi|312975724|gb|EFR41183.1| Holliday junction DNA helicase RuvA [Selenomonas sp. oral taxon 137 str. F0430] Length = 198 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 103/205 (50%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + D+ L+DV V Y ++ +T + + + G+ L++ TH+R+D I L Sbjct: 1 MIGFLRGTVVHSAVDHCLLDVHDVGYRVFVSRKTCAHIAQ-GEEALLYIHTHVREDAILL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S + F L + G+G + A +LS +T + I +N K I ++PGI K Sbjct: 60 YGFFSQEEYDLFQHLIGISGIGPKGAQSILSEVTPHDFYRLIHKKNVKGITKLPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + + D S V S A AL++LG+ Q++ Sbjct: 120 AERLVLELKDKFGAYADTGVDDTSAV-----VSDVSDSMLAEATEALMSLGFQQNE---- 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +V + + + +++R AL + Sbjct: 171 IQTVFQGKTDYQSTEELVRYALSVL 195 >gi|322437324|ref|YP_004219536.1| Holliday junction DNA helicase RuvA [Acidobacterium sp. MP5ACTX9] gi|321165051|gb|ADW70756.1| Holliday junction DNA helicase RuvA [Acidobacterium sp. MP5ACTX9] Length = 196 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 99/205 (48%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +++ GV Y + + T S L + G LF+ T + ++Q+ L Sbjct: 1 MIAHLRGLLLFKSTNQAVVECGGVGYDVAISVATYSALPREGAEAKLFIFTKVAEEQLAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ F L ++ G+G ++A+ VLS I A LV +I + + +IPGI K Sbjct: 61 FGFSDRQEKSLFEKLLTITGIGPKLAITVLSGIAADRLVTAIRGGDHDTLVKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K +++ A + S + +SALVNLGY + QA A Sbjct: 121 AERVVLELKDKLDDMATAP----------VAAVQSHGPAGDDVLSALVNLGYARPQAQKA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + L+ + R A+ I Sbjct: 171 IEMALRDPGAAGSFEVLFRAAMNHI 195 >gi|260887321|ref|ZP_05898584.1| holliday junction DNA helicase RuvA [Selenomonas sputigena ATCC 35185] gi|330838926|ref|YP_004413506.1| Holliday junction DNA helicase RuvA [Selenomonas sputigena ATCC 35185] gi|260862957|gb|EEX77457.1| holliday junction DNA helicase RuvA [Selenomonas sputigena ATCC 35185] gi|329746690|gb|AEC00047.1| Holliday junction DNA helicase RuvA [Selenomonas sputigena ATCC 35185] Length = 201 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 107/206 (51%), Gaps = 8/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + L D+ +DV GV Y ++ T L +G+ TLF +R+D + L Sbjct: 1 MIGFLRGKVARLSLDFCFLDVAGVGYRVFISGATHGRL-HMGEEVTLFTHLAVREDAMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ + + F +L SV G+G + A+G+LS IT L ++ + + ++ + PGI K Sbjct: 60 YGFFSEEEYELFQMLISVTGIGPKAALGILSNITPENLCLAVRNKKADILTKAPGIGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + + + V + + A +AL++LGY Q + Sbjct: 120 AERIILELKDKMKGFMTEHE---AIVEEGLLEEPVEDTMLAEAGAALLSLGYTQAE---- 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 +L++ K+ D +IR AL+ + Sbjct: 173 FTPILRRAKDCKDAEALIRFALKEFA 198 >gi|255691218|ref|ZP_05414893.1| holliday junction DNA helicase RuvA [Bacteroides finegoldii DSM 17565] gi|260623130|gb|EEX46001.1| holliday junction DNA helicase RuvA [Bacteroides finegoldii DSM 17565] Length = 201 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 102/205 (49%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + L +ID GV Y + T S + + C L++ +R+D L Sbjct: 1 MIEYIRGELAELSPATAVIDCNGVGYAANISLNTYSAI-QGKKTCKLYIYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F+LL SV G+G A +LS ++ ELV I +N+ ++ + GI +K Sbjct: 60 YGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANLLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K ++ + + + A++AL LG+ + Sbjct: 120 AQRVIVDLKDKIKTMGASAAGGSAVGGM--LLQAANAEVQEEAVAALTMLGFAAAPSQKV 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+++LK+E A ++I+LAL+ + Sbjct: 178 VLAILKEEPE-APVEKVIKLALKRL 201 >gi|294085860|ref|YP_003552620.1| Holliday junction DNA helicase RuvA [Candidatus Puniceispirillum marinum IMCC1322] gi|292665435|gb|ADE40536.1| Holliday junction DNA helicase RuvA [Candidatus Puniceispirillum marinum IMCC1322] Length = 207 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 110/206 (53%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + + + +IDVQGV Y++ RT L T+ E +R+D + L Sbjct: 1 MIAQLRGILSHTADTHAIIDVQGVGYLVNISSRTQGQLAAQDGAVTVLTEMIVREDSMTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F LL +VQGVGA+ AM +LS ++ +L +I+ + ++A+ G+ KI Sbjct: 61 YGFHDASERDAFRLLITVQGVGAKAAMAILSVLSPADLSSAIMAGDKAMVARADGVGPKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQ-DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ EL K S+ ++ S +A+SAL+NLGYG+ +A Sbjct: 121 AQRVVNELAEKIGRFPSLGDGLTINISGVTGGEDLPGASAMGDALSALINLGYGRSEAHA 180 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 A++ V ++ + D S +I ALR I Sbjct: 181 ALLRV-QQAGDADDLSGLIAAALREI 205 >gi|110597586|ref|ZP_01385871.1| Holliday junction DNA helicase RuvA [Chlorobium ferrooxidans DSM 13031] gi|110340706|gb|EAT59183.1| Holliday junction DNA helicase RuvA [Chlorobium ferrooxidans DSM 13031] Length = 200 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 55/202 (27%), Positives = 97/202 (48%), Gaps = 8/202 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G + L + +++V G+ Y T L + G L+ +R+D +L Sbjct: 1 MFAYFRGRLVSLLPEEAVVEVSGIAYRFLISASTSRQLPETGSEVLLYSHLSVREDAHQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+++ +RQ F LL GVG ++A+ VLS + E+ ++I+ + + I G+ K Sbjct: 61 YGFITEAERQMFRLLILTSGVGPKLALAVLSGLQVAEVYDAILANTPERLYGITGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ EL+ K + LS +AI+ALV LG+ + A Sbjct: 121 AARIILELRDKILKLSPAGTIA-------APSAQLSSRMRDDAINALVTLGFSRVTVQKA 173 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 V S+L+K + ++I+ AL Sbjct: 174 VDSILEKN-SALSVEEVIKSAL 194 >gi|317969751|ref|ZP_07971141.1| Holliday junction DNA helicase RuvA [Synechococcus sp. CB0205] Length = 225 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 54/213 (25%), Positives = 96/213 (45%), Gaps = 7/213 (3%) Query: 1 MIGKIKGNIEGLY--EDY--VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MIG ++G + + + VL+ GV Y + P R LG G L V +R+D Sbjct: 9 MIGWLQGQLADRWHLNNRFGVLLVCSGVGYEVQMPRRHWDQLGGNGTEAALHVHQVIRED 68 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF + +R F L +V GVG ++A+G+L +++ ELV +I+ + + + Q PG+ Sbjct: 69 SWTLYGFCARHERDLFRELVAVSGVGPQMALGLLGQLSCEELVRAIVQADLRQLCQAPGV 128 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF--AINAISALVNLGYGQ 174 + A R+ EL+ + Q + + + P+ L LGY Sbjct: 129 GKRTAERLSVELRTRLQQRYGESLQLSQSDDLQVSDSGEGPAAGVREEVQLTLSALGYEA 188 Query: 175 DQATTAVVSVLKKEKN-IADDSQIIRLALRAIS 206 + A+ ++ + D +R +LR +S Sbjct: 189 LEINRALRAISPQGPELGEDGDAWLRESLRYLS 221 >gi|323692211|ref|ZP_08106454.1| Holliday junction DNA helicase RuvA [Clostridium symbiosum WAL-14673] gi|323503785|gb|EGB19604.1| Holliday junction DNA helicase RuvA [Clostridium symbiosum WAL-14673] Length = 203 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 105/206 (50%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + D ++++ V IY P+ L L +G+ ++ +R+D + L Sbjct: 1 MISYVKGALAEKSGDRIVVEAGPVGLGIYVPLSVLEVLPPLGEEVKIYTYLQVREDDLSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ D F L V G+G + A+G+LS ++ +L +I+ ++K I++ PG+ K Sbjct: 61 YGFLNRQDLDMFRRLIGVNGIGPKGALGILSALSPDDLRLAILTGDAKAISKAPGVGAKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + + +E+ + M A +ALV LGY +A+ A Sbjct: 121 AQRIILDLKEKVSAEEMLASV---ADTEERTSVPLMQEAGREAATALVALGYSNLEASKA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V +V + D ++R +L+ ++ Sbjct: 178 VKNV--QITEDMDAEAVLRASLKYLA 201 >gi|167037426|ref|YP_001665004.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040093|ref|YP_001663078.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter sp. X514] gi|256752590|ref|ZP_05493444.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter ethanolicus CCSD1] gi|300914176|ref|ZP_07131492.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter sp. X561] gi|307724588|ref|YP_003904339.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter sp. X513] gi|320115839|ref|YP_004185998.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|229560136|sp|B0K955|RUVA_THEP3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560137|sp|B0K0L7|RUVA_THEPX RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166854333|gb|ABY92742.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter sp. X514] gi|166856260|gb|ABY94668.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256748528|gb|EEU61578.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter ethanolicus CCSD1] gi|300889111|gb|EFK84257.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter sp. X561] gi|307581649|gb|ADN55048.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter sp. X513] gi|319928930|gb|ADV79615.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 187 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 96/205 (46%), Gaps = 20/205 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G IE + +DYV+ID G+ ++ P TL L G+ L+ +R+D ++ Sbjct: 1 MIEYVRGIIEDIGQDYVVIDFMGIGIKVFVPFSTLKVLPSKGNITKLYTYLQVREDGFQI 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F L SV GVG + A+ +LS ++ V+++ + K + PGI K Sbjct: 61 FGFKTKEELDLFEKLLSVSGVGPKGALSILSVVSIDNFVKAVNAGDYKALTVAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + +F+ A+ AL+ LGY + +A A Sbjct: 121 AERIILELKDKLPK---------------EIVFEGDNNFSNEALEALLALGYTKSEAIYA 165 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + ++ AL+ + Sbjct: 166 LADI-----TCDSVEDAVKQALKKL 185 >gi|294651065|ref|ZP_06728403.1| crossover junction crossover junction ATP-dependent DNA helicase RuvA [Acinetobacter haemolyticus ATCC 19194] gi|292823044|gb|EFF81909.1| crossover junction crossover junction ATP-dependent DNA helicase RuvA [Acinetobacter haemolyticus ATCC 19194] Length = 201 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 103/205 (50%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG I G + L VL++V GV Y I P+ T L K G TL+ +R+D +L Sbjct: 1 MIGCIIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ F L V GVG ++A+G+LS ++ L+ +I + + ++PG+ K Sbjct: 60 YGFSDAQEKTIFRTLLKVNGVGPKMALGILSTLSVELLIHTIEHDDINTLIKVPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+M EL+ + +L+ + + + S A +AL +LGY +A A Sbjct: 120 AERLMIELRDRFKALAHSTGSTTNAAAAQIQFMT--NSPVAEAEAALQSLGYKPAEAQKA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +V AD IIR AL+++ Sbjct: 178 VAAVKADYTESAD---IIRAALKSM 199 >gi|226952125|ref|ZP_03822589.1| Holliday junction helicase, subunit A [Acinetobacter sp. ATCC 27244] gi|226837134|gb|EEH69517.1| Holliday junction helicase, subunit A [Acinetobacter sp. ATCC 27244] Length = 201 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 104/205 (50%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + L VL++V GV Y I P+ T L K G TL+ +R+D +L Sbjct: 1 MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ F L V GVG ++A+G+LS ++ L+ +I + + ++PG+ K Sbjct: 60 YGFSDAQEKTIFRTLLKVNGVGPKMALGILSTLSVELLIHTIEHDDINTLIKVPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+M EL+ + +L++ + + + S A +AL +LGY +A A Sbjct: 120 AERLMIELRDRFKALANSTGGTTNTAAAQIQFMA--NSPVAEAEAALQSLGYKPAEAQKA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +V AD IIR AL+++ Sbjct: 178 VAAVKADYTESAD---IIRAALKSM 199 >gi|325917782|ref|ZP_08179966.1| Holliday junction DNA helicase subunit RuvA [Xanthomonas vesicatoria ATCC 35937] gi|325535998|gb|EGD07810.1| Holliday junction DNA helicase subunit RuvA [Xanthomonas vesicatoria ATCC 35937] Length = 194 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 60/204 (29%), Positives = 95/204 (46%), Gaps = 13/204 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +++IDV GV Y + P+ T L +G LF ++D + L Sbjct: 1 MIGRLRGILAYKQPPWLVIDVGGVGYELEAPMSTFYDLPDVGRDVILFTHYAQKEDSVAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + +R+ F +Q V G+GA++A+ VLS ++ E I + + +IPGI K Sbjct: 61 YGFLREGERRLFRDVQKVTGIGAKIALAVLSGVSVDEFARLITGGDITALTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ +A SS P A AL LGY +A Sbjct: 121 AERMVVELRDRAADFSSGAP----------ITGQLGPDAVSEATVALQQLGYKPAEAARM 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + +A IR AL+A Sbjct: 171 AREAGAEGDEVATV---IRKALQA 191 >gi|253566072|ref|ZP_04843526.1| Holliday junction DNA helicase motor protein [Bacteroides sp. 3_2_5] gi|251945176|gb|EES85614.1| Holliday junction DNA helicase motor protein [Bacteroides sp. 3_2_5] Length = 201 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I L +ID G+ Y + + T S + + C L++ +R+D L Sbjct: 1 MIEYIKGEIAELSPATAVIDCNGLGYAVNISLNTYSAI-QGKSSCKLYIYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F+LL SV G+G A +LS ++ ELV I +N+ ++ + GI +K Sbjct: 60 YGFADKQERELFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + + + AI+AL LG+ + A Sbjct: 120 AQRVIVDLKDKIKTGAMAATAVGGAAGALLPAM--NAEVQEEAIAALTMLGFAATPSQKA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+++LK+E + A ++I+LAL+ + Sbjct: 178 VLAILKEEPD-APVEKVIKLALKRL 201 >gi|167751984|ref|ZP_02424111.1| hypothetical protein ALIPUT_00226 [Alistipes putredinis DSM 17216] gi|167660225|gb|EDS04355.1| hypothetical protein ALIPUT_00226 [Alistipes putredinis DSM 17216] Length = 194 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 95/205 (46%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G I L + ++DV GV Y + ++T S + + D LFV +R+D L Sbjct: 1 MYEYLSGTISELAPTHAVLDVGGVGYFLQISLQTYSEI-EHSDRVKLFVHYVVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R+ F L SV GVG A +LS + EL I +N+ ++ + G+ +K Sbjct: 60 YGFASKAERELFRHLISVSGVGGNTARMILSTYSPRELQGIIATENAVLLKNVKGLGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ EL GK L A++ALV LG+G+ A Sbjct: 120 AQKIIVELSGKMAGLGLTGDT---------VTAPVAGGDYEEALAALVMLGFGKAAADKV 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V ++ A ++R++L+ + Sbjct: 171 VKIVARENP-GASVEDLVRMSLKRL 194 >gi|253578705|ref|ZP_04855976.1| Holliday junction DNA helicase RuvA [Ruminococcus sp. 5_1_39B_FAA] gi|251849648|gb|EES77607.1| Holliday junction DNA helicase RuvA [Ruminococcus sp. 5_1_39BFAA] Length = 202 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 60/203 (29%), Positives = 100/203 (49%), Gaps = 3/203 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + E V+++ G+ Y IY LS + ++G+ + +R+D ++L Sbjct: 1 MIAFVHGMAVDMTESSVVVEAGGIGYEIYMTGADLSEI-RMGEDVKVHTYFSVREDAMKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + D Q F LL V GVG + A+GVL+ ITA EL +I+ + K +++ PGI K Sbjct: 60 YGFRAKDDLQMFKLLLGVNGVGPKAALGVLAGITADELRFAILSDDVKTLSKAPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK K + + + + + A+ ALV LGY A A Sbjct: 120 AQKLILELKDKMKLEDAFELKLVHEQERAAVGAGEVSDGRQEAVEALVALGYSSADALRA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V V + D +++ AL+ Sbjct: 180 VRKVTDVSPD--DVEGLLKAALK 200 >gi|298479676|ref|ZP_06997876.1| holliday junction DNA helicase RuvA [Bacteroides sp. D22] gi|298274066|gb|EFI15627.1| holliday junction DNA helicase RuvA [Bacteroides sp. D22] Length = 200 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 105/205 (51%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + L +ID GV Y + T S + + C L++ +R+D L Sbjct: 1 MIEYIRGELAELSPATAVIDCNGVGYAANISLNTYSAI-QGKKNCKLYIHEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F+LL SV G+G A +LS ++ ELV I +N+ ++ + GI +K Sbjct: 60 YGFAEKQEREIFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K ++S +S Q + A+SAL LG+ + Sbjct: 120 AQRVIVDLKDKIKTMSGSAGGGVSAGLLLQ---PANAEVQEEAVSALTMLGFAAAPSQKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+++LK+E + A ++I+LAL+ + Sbjct: 177 VLAILKEEPD-APVEKVIKLALKRL 200 >gi|310829219|ref|YP_003961576.1| Holliday junction DNA helicase RuvA [Eubacterium limosum KIST612] gi|308740953|gb|ADO38613.1| Holliday junction DNA helicase RuvA [Eubacterium limosum KIST612] Length = 203 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 59/202 (29%), Positives = 107/202 (52%), Gaps = 7/202 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKGN E DY+++D QG+ Y I T+S L K+ +++ ++D + L Sbjct: 1 MFEYIKGNYEEQASDYIVVDHQGMGYRINVSANTMSELPKLHKEVKVYIHPAFKEDDVTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R+ F + ++ G+G + AMG+LS+ T EL+ I+ +++K I++ PGI K Sbjct: 61 YGFSSKEEREIFRTIITISGIGPKAAMGLLSQFTRDELIRYIVNEDAKAISRAPGIGQKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ ELK K + + + + ++ + A++ L+ LGYG +A+ Sbjct: 121 ANRIILELKDKYKNFAFTDSAEPGAIE----NLRETDNLFNEAVNGLLGLGYGYAEASEL 176 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 V +++ I++ AL Sbjct: 177 VEKIIQ---PGMSIEDILKNAL 195 >gi|53714974|ref|YP_100966.1| Holliday junction DNA helicase RuvA [Bacteroides fragilis YCH46] gi|60682940|ref|YP_213084.1| Holliday junction DNA helicase RuvA [Bacteroides fragilis NCTC 9343] gi|265766821|ref|ZP_06094650.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 2_1_16] gi|81314002|sp|Q5L9Q7|RUVA_BACFN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|81381448|sp|Q64PZ9|RUVA_BACFR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|52217839|dbj|BAD50432.1| Holliday junction DNA helicase RuvA [Bacteroides fragilis YCH46] gi|60494374|emb|CAH09170.1| putative holliday junction DNA helicase [Bacteroides fragilis NCTC 9343] gi|263253198|gb|EEZ24674.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 2_1_16] gi|301164406|emb|CBW23964.1| putative holliday junction DNA helicase [Bacteroides fragilis 638R] Length = 201 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I L +ID G+ Y + + T S + + C L++ +R+D L Sbjct: 1 MIEYIKGEIAELSPATAVIDCNGLGYAVNISLNTYSAI-QGKSSCKLYIYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F+LL SV G+G A +LS ++ ELV I +N+ ++ + GI +K Sbjct: 60 YGFADKQERELFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + + + AI+AL LG+ + A Sbjct: 120 AQRVIVDLKDKIKTGAMAATAVGGAAGALLPAM--NAEVQEEAIAALTMLGFAAAPSQKA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+++LK+E + A ++I+LAL+ + Sbjct: 178 VLAILKEEPD-APVEKVIKLALKRL 201 >gi|260551462|ref|ZP_05825646.1| Holliday junction helicase subunit A [Acinetobacter sp. RUH2624] gi|260405456|gb|EEW98949.1| Holliday junction helicase subunit A [Acinetobacter sp. RUH2624] Length = 203 Score = 151 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 67/205 (32%), Positives = 104/205 (50%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + L VL++V GV Y I P+ T L K G TL+ +R+D +L Sbjct: 5 MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 63 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ F L V GVG ++A+G+LS ++ LV +I + + ++PG+ K Sbjct: 64 YGFSDAQEKTIFRTLLKVNGVGPKMALGILSTLSVELLVHTIEHDDVNTLVKVPGVGKKT 123 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+M EL+ + +L+ Q S V + S A +AL +LGY +A A Sbjct: 124 AERLMIELRDRFKTLA----QGTSTVATMPQIQFAANSPVAEAEAALQSLGYKPLEAQKA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +V AD IIR AL+++ Sbjct: 180 VAAVKADYTESAD---IIRAALKSM 201 >gi|326390112|ref|ZP_08211673.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter ethanolicus JW 200] gi|325993760|gb|EGD52191.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter ethanolicus JW 200] Length = 187 Score = 151 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 99/205 (48%), Gaps = 20/205 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G IE + +DYV+ID G+ ++ P TL L G+ L+ HMR+D ++ Sbjct: 1 MIEYIRGMIEDIGQDYVVIDFMGIGIKVFVPFSTLKVLPSKGNITKLYTYLHMREDGFQI 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F L SV GVG + A+ +LS ++ V+++ + + K + PGI K Sbjct: 61 FGFKTKEELDLFEKLLSVSGVGPKGALSILSVVSIDNFVKAVNVGDYKALTIAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + +F+ A+ AL+ LGY + +A A Sbjct: 121 AERIILELKDKLPK---------------EIVFEGDNNFSNEALEALLALGYTKSEAIYA 165 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + ++ AL+ + Sbjct: 166 LADI-----TCDSVEEAVKQALKKL 185 >gi|91203074|emb|CAJ72713.1| strongly similar to DNA helicase RuvA [Candidatus Kuenenia stuttgartiensis] Length = 196 Score = 151 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 65/203 (32%), Positives = 112/203 (55%), Gaps = 10/203 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ I+G + ++++V GV Y+++ PI T + G+ T+ + +R+D I+L Sbjct: 1 MLDYIRGQVISKSPTKLVLEVAGVGYLLHIPISTFEKIPSRGE-VTIHTQLFLREDGIKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF SD +R F LL SV GVG +A+ +LS TA ++ +I +++K + +I G+ K Sbjct: 60 FGFASDEERGLFQLLLSVNGVGPTMAIAILSGSTANDIKCAIAREDTKALMRIKGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK + + +M + +FA +AI AL++LGYG+ A A Sbjct: 120 AERIVLELKESVKGAKASIDIEMDGRQR---------AFADDAIMALISLGYGRPVAENA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V +KK ++ + ++R AL+ Sbjct: 171 VKEAVKKLNSVDNIEVLVREALK 193 >gi|84501645|ref|ZP_00999817.1| Holliday junction DNA helicase motor protein [Oceanicola batsensis HTCC2597] gi|84390266|gb|EAQ02825.1| Holliday junction DNA helicase motor protein [Oceanicola batsensis HTCC2597] Length = 220 Score = 151 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 74/219 (33%), Positives = 117/219 (53%), Gaps = 14/219 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G I+ D+VLIDV+GV Y+++ RTL+ L G+ L+ E +R+D ++L Sbjct: 1 MIGRLAGRIDMRGPDHVLIDVRGVGYVVFVSDRTLATLPGAGEAAALYTELIVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++++WF LL SVQGVGA+ A+ +L + A L +I L + + GI K Sbjct: 61 YGFPTLVEKEWFRLLTSVQGVGAKGALAILGALGAEGLGRAIALGDQASVKAAKGIGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM-------------PSFAINAISAL 167 A RI+ ELK KA ++ ++ + + + S A+SAL Sbjct: 121 AQRIVLELKDKAPAVMAMGGAAPTSAAPAETEVVEPVPAPAATAAPASTASAQAEALSAL 180 Query: 168 VNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 NLGYG +A AV + AD + +IR ALR ++ Sbjct: 181 GNLGYGPSEAAAAVAEAAGETP-RADTAALIRSALRRLA 218 >gi|320109383|ref|YP_004184973.1| Holliday junction DNA helicase RuvA [Terriglobus saanensis SP1PR4] gi|319927904|gb|ADV84979.1| Holliday junction DNA helicase RuvA [Terriglobus saanensis SP1PR4] Length = 198 Score = 151 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 100/206 (48%), Gaps = 10/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +++ GV Y + + T S L G LF+ T +R+D I L Sbjct: 1 MIAHLRGRLLAKSPNQAIVECGGVGYDVAISVTTFSALKSEGAEVELFINTQVREDAIAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +++ F L +V G+G ++ + VLS I A LV +I + + +IPGI K Sbjct: 61 FGFAEMEEKRLFEKLITVSGIGPKLGITVLSGIAAPLLVAAIKGSDHATLQKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + S D + +SAL NLGY + A A Sbjct: 121 AERVVVELKDKLEDMISAPSADPGFHAGPAG---------DDVLSALANLGYQKAAAQRA 171 Query: 181 VVSVLKKEKNI-ADDSQIIRLALRAI 205 + + +++E + + ++ R A+ A+ Sbjct: 172 IQTAIEQEPALRTEFEKLFRAAMGAM 197 >gi|302517991|ref|ZP_07270333.1| Holliday junction DNA helicase RuvA [Streptomyces sp. SPB78] gi|318057102|ref|ZP_07975825.1| Holliday junction DNA helicase RuvA [Streptomyces sp. SA3_actG] gi|333028331|ref|ZP_08456395.1| putative holliday junction DNA helicase RuvA [Streptomyces sp. Tu6071] gi|302426886|gb|EFK98701.1| Holliday junction DNA helicase RuvA [Streptomyces sp. SPB78] gi|332748183|gb|EGJ78624.1| putative holliday junction DNA helicase RuvA [Streptomyces sp. Tu6071] Length = 206 Score = 151 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 55/209 (26%), Positives = 100/209 (47%), Gaps = 9/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L +++V G+ + C TLS L +IG+ + +R+D + L Sbjct: 1 MIAFVSGPVAALGPTSAVVEVGGIGMAVQCTPHTLSTL-RIGEQARIATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ ++ L ++ + K + +PGI K Sbjct: 60 YGFADDDERQTFELLQTASGVGPRLAQAMLATLSPDALRLAVSTADEKALTAVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK + + ++ P + +ALV LGY +A A Sbjct: 120 AQKLILELKDRLGQ-----PLGTGTLGAQRRAAAGPPPWTEQLHTALVGLGYQPREAEEA 174 Query: 181 VVSVLKKEKNIADDSQ---IIRLALRAIS 206 V +V + + + ++R AL+ ++ Sbjct: 175 VEAVTPQAEAQEGVPEIGPLLRAALQTLN 203 >gi|78188435|ref|YP_378773.1| Holliday junction DNA helicase RuvA [Chlorobium chlorochromatii CaD3] gi|90134727|sp|Q3ATE5|RUVA_CHLCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|78170634|gb|ABB27730.1| Holliday junction DNA helicase subunit RuvA [Chlorobium chlorochromatii CaD3] Length = 204 Score = 151 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 60/202 (29%), Positives = 99/202 (49%), Gaps = 6/202 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G + D +I++QGV Y T L G LF ++R+D + L Sbjct: 1 MYAYFRGTLISFTADEAIIELQGVAYHFLISATTSRQLPNSGSEVQLFAHLYVREDAMLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +RQ F LL GVG ++A+ VLS + E+ ++I+ + + I G+ K Sbjct: 61 YGFYSEEERQLFRLLLQASGVGPKLALSVLSGLPVHEVHDAIVSNIPERLYGISGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ EL+ K + LS V+ + A +AI+ALV LG+ + A Sbjct: 121 AARIILELRDKILKLSPVLPTATARRPHNAAQ-----QLRDDAITALVTLGFPRAAAQKT 175 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 V S+L + N ++++ AL Sbjct: 176 VTSLLDENSNC-TVEEVVKSAL 196 >gi|258512078|ref|YP_003185512.1| Holliday junction DNA helicase RuvA [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478804|gb|ACV59123.1| Holliday junction DNA helicase RuvA [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 208 Score = 151 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 109/205 (53%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + L YV +DV+ V Y ++ RT + L +GD L+ H+R+D L Sbjct: 1 MIAFLRGRVAFLGPGYVDLDVRDVGYRVHVCDRTQAAL-NLGDTAFLYTHHHVREDGWAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L +V G+G ++A+ V+ E+V +I+ ++++ ++++PGI K+ Sbjct: 60 YGFETIEERALFERLVAVSGIGPKLALQVIGAAGVGEIVAAILAEDAESLSRLPGIGRKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASR++ EL+ K L+ + + + Q S A +A+SALV LGY +A A Sbjct: 120 ASRLVVELREKLDDLAPAALRAPAPASSPQG------SAAEDAVSALVALGYRPREAEEA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +V + I+ AL + Sbjct: 174 VSAVGR---GRQSVEDTIKAALTYL 195 >gi|293609857|ref|ZP_06692159.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828309|gb|EFF86672.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325123084|gb|ADY82607.1| holliday junction helicase subunit A [Acinetobacter calcoaceticus PHEA-2] Length = 199 Score = 151 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 67/205 (32%), Positives = 104/205 (50%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + L VL++V GV Y I P+ T L K G TL+ +R+D +L Sbjct: 1 MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ F L V GVG ++A+G+LS ++ LV +I + + ++PG+ K Sbjct: 60 YGFSDAQEKTIFRTLLKVNGVGPKMALGILSTLSVELLVHTIEHDDINTLVKVPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+M EL+ + +L+ Q S V + S A +AL +LGY +A A Sbjct: 120 AERLMIELRDRFKTLA----QGTSTVATMPQIQFAANSPVAEAEAALQSLGYKPLEAQKA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +V AD IIR AL+++ Sbjct: 176 VAAVKADYTESAD---IIRAALKSM 197 >gi|329938965|ref|ZP_08288339.1| Holliday junction DNA helicase RuvA [Streptomyces griseoaurantiacus M045] gi|329301850|gb|EGG45743.1| Holliday junction DNA helicase RuvA [Streptomyces griseoaurantiacus M045] Length = 201 Score = 151 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 55/209 (26%), Positives = 97/209 (46%), Gaps = 14/209 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L D +++V GV + C TLS L ++G L +R+D + L Sbjct: 1 MIAFVSGTVAALAPDTAVLEVGGVGMAVQCTPNTLSTL-RLGRPAKLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +RQ F LLQ+ GVG R+A +L+ + L ++ + K + +PGI K Sbjct: 60 YGFADEDERQVFELLQTASGVGPRLAQAMLAVHSPDALRRAVSTGDEKALTAVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK + + + + +AL+ LGY +A A Sbjct: 120 AQKLLLELKDRLGE----------PLGAPAVGAPAGQGWRDQLHAALIGLGYATREADEA 169 Query: 181 VVSVLKKEKNIADDSQ---IIRLALRAIS 206 V +V + + Q ++R AL+ ++ Sbjct: 170 VAAVTPQAEAAEGTPQVGPLLRAALQTLN 198 >gi|317480654|ref|ZP_07939741.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 4_1_36] gi|316903161|gb|EFV25028.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 4_1_36] Length = 200 Score = 151 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 105/205 (51%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G I L +ID G+ Y + + T + + + C L+V +R+D L Sbjct: 1 MIEYIRGGIAELSPATAVIDCNGLGYGVNISLNTYAAI-QGKKECKLYVYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F+LL SV G+G A +LS ++ +EL+ I +N+ ++ + GI +K Sbjct: 60 YGFADKQERELFLLLISVSGIGGNTARMILSALSPSELINVISTENATLLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + S + + A++AL LG+ Q + Sbjct: 120 AQRVIVDLKDKIKTGSVATGNAGTIG---TLVSAANVQVQEEAVAALTMLGFAQAPSQKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+++LK+E + A Q+I+LAL+ + Sbjct: 177 VLAILKEEPS-APVEQVIKLALKRL 200 >gi|291519343|emb|CBK74564.1| Holliday junction DNA helicase, RuvA subunit [Butyrivibrio fibrisolvens 16/4] Length = 205 Score = 151 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 52/206 (25%), Positives = 101/206 (49%), Gaps = 3/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G + + E+ V+++ GV Y + + T+ L IG L + ++D + L Sbjct: 1 MFAYVRGTLSDIDENIVIVENNGVGYCLSSSMNTIRQLPAIGSEVKLNTKLIPKEDSLTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + F LL SV G+G + A+ +LS +T +++ ++ +++K A PGI K Sbjct: 61 YGFYDKEELKMFELLLSVSGIGPKGALAILSSMTVSDIQFAVAGEDAKAFAACPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R + +LK K + + + S ++ +++ + S + ALV LGY A A Sbjct: 121 AERAIIDLKDKVDIIGAFEAKITSDLSGKKSASPGI-SVKEEVLEALVALGYSASNAARA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + E Q++ L+ +S Sbjct: 180 LDKMAITE--STTTEQLLGDTLKQMS 203 >gi|228993160|ref|ZP_04153082.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus pseudomycoides DSM 12442] gi|228999210|ref|ZP_04158791.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus mycoides Rock3-17] gi|229006757|ref|ZP_04164391.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus mycoides Rock1-4] gi|228754618|gb|EEM04029.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus mycoides Rock1-4] gi|228760555|gb|EEM09520.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus mycoides Rock3-17] gi|228766619|gb|EEM15260.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus pseudomycoides DSM 12442] Length = 212 Score = 151 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 47/204 (23%), Positives = 95/204 (46%), Gaps = 5/204 (2%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 + G +E + +YV++D G+ Y I+ P + ++ ++R+D + L+ Sbjct: 9 FEYVTGYVEYVGPEYVVLDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALY 66 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF + +R F L V G+G + A+ +L+ ++V++I ++ K + + PG+ K A Sbjct: 67 GFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTA 126 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 +++ +LKGK + D+ + + A+ AL LGY + + + V Sbjct: 127 RQMILDLKGKLADVVPDAFVDLFSDVERFDEKKGSSAELDEALEALRALGYAEREVSRVV 186 Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205 +LK+ Q I+ AL + Sbjct: 187 PELLKE---SLTTDQYIKKALSLL 207 >gi|325278890|ref|YP_004251432.1| Holliday junction ATP-dependent DNA helicase ruvA [Odoribacter splanchnicus DSM 20712] gi|324310699|gb|ADY31252.1| Holliday junction ATP-dependent DNA helicase ruvA [Odoribacter splanchnicus DSM 20712] Length = 193 Score = 151 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 97/205 (47%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + Y +I+ GV Y I + T S + + +L++ +R+D + L Sbjct: 1 MYEYIKGLLVEATPAYAVIECGGVGYYINISVNTYSQIVAL-QQVSLYIHQIVREDALLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L SV G+GA A +LS +T E+ +I+ +N I + GI +K Sbjct: 60 YGFFNKEERTVFRQLISVSGIGANTASVMLSSMTVKEIAGAILTENVNAIKSVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K S + + + A++ALV LG+ + QA Sbjct: 120 AQRVIIELKDKIAVTGSAEEMNFGASV----------AIKEEALAALVMLGFVKAQANKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ + ++I+ AL+ + Sbjct: 170 LDKIMAG-GGVTSVEELIKQALKQL 193 >gi|308177527|ref|YP_003916933.1| Holliday junction ATP-dependent DNA helicase RuvA [Arthrobacter arilaitensis Re117] gi|307744990|emb|CBT75962.1| Holliday junction ATP-dependent DNA helicase RuvA [Arthrobacter arilaitensis Re117] Length = 205 Score = 151 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 58/209 (27%), Positives = 103/209 (49%), Gaps = 12/209 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G ++ + + +IDV G ++ TLS L G T+F +R+D + L Sbjct: 1 MISSLTGTVQAVALNTAVIDVNGFGMLVNATPGTLSALHA-GREATVFTSMVVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F +L SV G+G R + +L+ + E+ + +++ ++ GI K Sbjct: 60 FGFATAEERDVFEVLISVSGIGPRTGLAILAVHSPEEVRIAANTKDTAAFTKVSGIGPKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ EL GK + + V N + + I AL LG+ + AT Sbjct: 120 ASRIVLELNGKLVPTGAPVPSSSGGGN--------VSVWEPQVIEALTGLGWSEKDATAT 171 Query: 181 VVSVLKKEKNI---ADDSQIIRLALRAIS 206 + S+ K + ++ + ++I+R ALR++S Sbjct: 172 LKSLSKADPDVIAAGNVAEILRAALRSMS 200 >gi|229013638|ref|ZP_04170769.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus mycoides DSM 2048] gi|229169164|ref|ZP_04296879.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus AH621] gi|228614392|gb|EEK71502.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus AH621] gi|228747697|gb|EEL97569.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus mycoides DSM 2048] Length = 212 Score = 151 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 48/204 (23%), Positives = 94/204 (46%), Gaps = 5/204 (2%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 + G +E + +YV+ID G+ Y I+ P + ++ ++R+D + L+ Sbjct: 9 FEYVTGYVEYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALY 66 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF + +R F L V G+G + A+ +L+ ++V++I ++ K + + PG+ K A Sbjct: 67 GFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTA 126 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 +++ +LKGK + D+ + A+ AL LGY + + + V Sbjct: 127 RQMILDLKGKLADVVPDAFVDLFSDTESFDTKKGSSVELDEALEALRALGYAEREVSRVV 186 Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205 +LK+ Q I+ AL + Sbjct: 187 PELLKE---SLTTDQYIKKALSLL 207 >gi|149277483|ref|ZP_01883624.1| Holliday junction DNA helicase [Pedobacter sp. BAL39] gi|149231716|gb|EDM37094.1| Holliday junction DNA helicase [Pedobacter sp. BAL39] Length = 194 Score = 151 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 99/205 (48%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + Y++++ G+ Y I + T S LG + + C ++ H+++D L Sbjct: 1 MFEYIDGRLSFKCPAYIVVEAGGIGYHINISLNTYSLLGDM-ERCKIYTWLHVKEDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F+ L SV G+GA A +LS IT E+ +I+ + +I +I GI K Sbjct: 60 YGFAEEGERRLFLHLISVSGIGANTARMMLSSITPIEIQTAIVNGDLPLIQRIKGIGAKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K S + A+SAL+ LG+ + A A Sbjct: 120 AQRLVLELQDKLKKEGSGS----------LIAAPLNHTVREEALSALMMLGFAKQPAEKA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + +K Q+I++AL+ + Sbjct: 170 LDNAVKTGGVELSVEQMIKIALKNL 194 >gi|270296033|ref|ZP_06202233.1| Holliday junction DNA helicase RuvA [Bacteroides sp. D20] gi|270273437|gb|EFA19299.1| Holliday junction DNA helicase RuvA [Bacteroides sp. D20] Length = 200 Score = 151 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 106/205 (51%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G I L +ID G+ Y + + T + + + C L++ +R+D L Sbjct: 1 MIEYIRGGIAELSPATAIIDCNGLGYGVNISLNTYAAI-QGKKECKLYIYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F+LL SV G+G A +LS ++ +EL+ I +N+ ++ + GI +K Sbjct: 60 YGFADKQERELFLLLISVSGIGGNTARMILSALSPSELINVISTENATLLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + S V + + A++AL LG+ Q + Sbjct: 120 AQRIIVDLKDKIKTGSVVAGNAGTIG---TLVSAANAQVQEEAVAALTMLGFAQAPSQKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+++LK+E + A Q+I+LAL+ + Sbjct: 177 VLAILKEEPS-APVEQVIKLALKRL 200 >gi|89899549|ref|YP_522020.1| Holliday junction DNA helicase RuvA [Rhodoferax ferrireducens T118] gi|123091484|sp|Q220R4|RUVA_RHOFD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|89344286|gb|ABD68489.1| Holliday junction DNA helicase RuvA [Rhodoferax ferrireducens T118] Length = 190 Score = 151 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 17/205 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ V++D GV Y + P+ T L ++G +L +R+D L Sbjct: 1 MIGKLSGTLDDKNPPQVIVDCHGVGYEVLVPMSTFYNLPELGARVSLLTHFVVREDAQIL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L + GVG R A+ VLS ++ EL +++ LQ + ++PGI K Sbjct: 61 YGFATSQERAAFRELIKISGVGPRTALSVLSGMSVAELAQAVTLQEGGRLIKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R +++ + + AL+ LGY Sbjct: 121 AER-------------LLLELKGKLGPDIGVAASVANDSQADILQALLALGYS----DKE 163 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + LK + S+ IRLALRA+ Sbjct: 164 AAAALKALPSDVGVSEGIRLALRAL 188 >gi|326773260|ref|ZP_08232543.1| holliday junction DNA helicase RuvA [Actinomyces viscosus C505] gi|326636490|gb|EGE37393.1| holliday junction DNA helicase RuvA [Actinomyces viscosus C505] Length = 217 Score = 151 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 56/212 (26%), Positives = 100/212 (47%), Gaps = 8/212 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +I+ GV I TLS L ++G+ + E +R+D + L Sbjct: 1 MIASLRGTVLSVGLTSAVIETGGVGMSIQATPTTLSGL-RVGEETLVHTEMVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L S +GVGA++A+ +L+ T L +I Q+ + ++PG+ K Sbjct: 60 FGFADTDERDSFRTLMSAKGVGAKLALAMLAVHTPNALRRAIASQDVAALTRVPGLGPKG 119 Query: 121 ASRIMTELKGKAISLS----SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ ++ K ++ Q +A P + ++ALV LG+ + Sbjct: 120 AQRVILDVADKLGPVTGDDLGAAQTVAQSAQGVEAMSDGGPEPHADVVAALVQLGWNEAS 179 Query: 177 ATTAVVSVLKKEKNI---ADDSQIIRLALRAI 205 A AV SV + D + ++R +LR + Sbjct: 180 AQQAVSSVTADAADGGQEPDMAAVLRASLRWL 211 >gi|157825657|ref|YP_001493377.1| Holliday junction DNA helicase RuvA [Rickettsia akari str. Hartford] gi|166200253|sp|A8GN94|RUVA_RICAH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|157799615|gb|ABV74869.1| Holliday junction DNA helicase motor protein [Rickettsia akari str. Hartford] Length = 203 Score = 151 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 72/203 (35%), Positives = 120/203 (59%), Gaps = 6/203 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G I+ +DY++IDV GV Y++Y +TL L + G+F LF+ETH+R++ I L Sbjct: 1 MIGKLSGKIDAQGDDYIIIDVNGVGYLVYASGKTLGKLSE-GEFYKLFIETHVREEHIHL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ +F LLQSV G+G R+A+ +LS +T T++ +I ++ + I G+ K+ Sbjct: 60 YGFLTIEEKNFFNLLQSVNGIGTRMALSILSNLTPTDIQIAINNEDKDIFKAISGVGAKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELKGK +S + +N + I ALVNLG+ + +A + Sbjct: 120 AERIVLELKGKVAKIS----TGAAIINDSLNIKNITSVASNEVIKALVNLGFSRFEAQNS 175 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V ++ + I ++I+ AL+ Sbjct: 176 VQGIVIQNPEI-SIDELIKTALK 197 >gi|153809430|ref|ZP_01962098.1| hypothetical protein BACCAC_03744 [Bacteroides caccae ATCC 43185] gi|149128016|gb|EDM19238.1| hypothetical protein BACCAC_03744 [Bacteroides caccae ATCC 43185] Length = 201 Score = 151 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 102/205 (49%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + L +ID GV Y + T S + + C LF+ +R+D L Sbjct: 1 MIEYVRGELAELSPATAVIDCNGVGYAANISLNTYSAI-QGKKTCKLFIYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F+LL SV G+G A +LS ++ +ELV I +N+ ++ + GI +K Sbjct: 60 YGFADKQEREIFLLLISVSGIGGNTARMILSALSPSELVSVISAENANLLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K ++ + + A++AL LG+ + Sbjct: 120 AQRLIVELKDKIKTVGMAAVGGTTSAGMLL--QSANAEVQEEAVAALTMLGFAAAPSQKV 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V++VLK+E A ++I+LAL+ + Sbjct: 178 VLAVLKEEPE-APVEKVIKLALKRL 201 >gi|149183130|ref|ZP_01861580.1| Holliday junction DNA helicase motor protein [Bacillus sp. SG-1] gi|148849162|gb|EDL63362.1| Holliday junction DNA helicase motor protein [Bacillus sp. SG-1] Length = 202 Score = 151 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 101/205 (49%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G ++ + +YV+++ G+ Y I+ L + T++ H+R+D + L Sbjct: 1 MYEYINGTVKRVGPEYVVLENGGIGYQIFTSNPFLFSKFE-NQNTTIYTYQHVREDILAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS ++ F+ L +V G+G + A+ +L+ +++ +I ++ + + + PG+ K Sbjct: 60 YGFLSMEEKMLFIKLLNVSGIGPKGALAILASGAPEQVISAIEGEDERFLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK + ++ K ++ + + A AL LGY + + Sbjct: 120 ARQMILDLKGKLQDVVPDYFPNLFQEGKHES-VSANDELVEEAALALKALGYSEREIKKV 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++K ++I+ AL+ + Sbjct: 179 TPKLSSQDK---TTDELIKDALKLL 200 >gi|94496110|ref|ZP_01302688.1| probable holliday junction DNA helicase protein [Sphingomonas sp. SKA58] gi|94424289|gb|EAT09312.1| probable holliday junction DNA helicase protein [Sphingomonas sp. SKA58] Length = 202 Score = 151 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 67/206 (32%), Positives = 110/206 (53%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K++G ++ D+ +IDV GV Y++ RTL+ LG +G+ T+ E + +D IRL Sbjct: 1 MIAKLRGLLDSTGIDHAVIDVGGVGYLVGASSRTLAALGPVGEAVTIHTEMLVAEDSIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF +R W+ LL VQGVG+RVA+ +LS + EL ++ + ++ + G+ K+ Sbjct: 61 VGFARADERDWYRLLTHVQGVGSRVALAILSALEPAELHRAVATGDKAMVTRANGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + A + + + +A+SAL NLG+ +A+ A Sbjct: 121 AQRIVNELKDKIG-----AAPAGGPIGVGGAVAMPVGNMSTDALSALQNLGFKPAEASAA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + + A ++RLALR + Sbjct: 176 VAAAEGELGEGASLDALVRLALRKAA 201 >gi|150009258|ref|YP_001304001.1| Holliday junction DNA helicase RuvA [Parabacteroides distasonis ATCC 8503] gi|256841816|ref|ZP_05547322.1| Holliday junction DNA helicase RuvA [Parabacteroides sp. D13] gi|298376955|ref|ZP_06986909.1| holliday junction DNA helicase RuvA [Bacteroides sp. 3_1_19] gi|301311050|ref|ZP_07216979.1| holliday junction DNA helicase RuvA [Bacteroides sp. 20_3] gi|166230579|sp|A6LFB5|RUVA_PARD8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|149937682|gb|ABR44379.1| Holliday junction DNA helicase RuvA [Parabacteroides distasonis ATCC 8503] gi|256736710|gb|EEU50038.1| Holliday junction DNA helicase RuvA [Parabacteroides sp. D13] gi|298265939|gb|EFI07598.1| holliday junction DNA helicase RuvA [Bacteroides sp. 3_1_19] gi|300831113|gb|EFK61754.1| holliday junction DNA helicase RuvA [Bacteroides sp. 20_3] Length = 196 Score = 151 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 102/205 (49%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I L ++++ G+ Y + + T S G +++ +R+D L Sbjct: 1 MIEYIKGEIVELTPTRMILECGGIGYELNISLNTYSAFGN-KTTGKIYIYEVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++R+ F+LL SV GVG A +LS + +ELV+ I +N + + GI +K Sbjct: 60 FGFAEKIERELFLLLTSVSGVGPNTARMILSSLPPSELVQVIGSKNEAALTAVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + S+ S + A++ALV LG+ + + A Sbjct: 120 AQRILVDLKNKVKPMESMAGNLPEAS-------VSNGAVTEEAVAALVMLGFQKAASQKA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++LK +A Q+I+ ALR + Sbjct: 173 VSAILKGSPTLA-VEQVIKTALRML 196 >gi|182418560|ref|ZP_02949841.1| holliday junction DNA helicase RuvA [Clostridium butyricum 5521] gi|237668331|ref|ZP_04528315.1| Holliday junction DNA helicase RuvA [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377563|gb|EDT75114.1| holliday junction DNA helicase RuvA [Clostridium butyricum 5521] gi|237656679|gb|EEP54235.1| Holliday junction DNA helicase RuvA [Clostridium butyricum E4 str. BoNT E BL5262] Length = 200 Score = 151 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 106/205 (51%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG G+ +DY++++ G+ Y I+ T+S + + G+ L+V+ +R+D I L Sbjct: 1 MYEYIKGKYMGMNKDYIVVENSGIGYKIFTSGATMSSVPECGEEVILYVDQIVREDFIGL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S + F LL +V GVG + A+ +LS L +I+ + K I + GI K Sbjct: 61 YGFDSKEELAMFKLLLTVNGVGPKAALSLLSISRLNNLKYAIMTGDEKHICRGVGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ ELK K + D++ + + + + +SAL+ LGY + ++ Sbjct: 121 AARIILELKDKLQPDELL---DVAVDSNKDNNGENNLMAVSEVLSALIALGYSEKESEKV 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ K E +I+ AL+A+ Sbjct: 178 LKTIDKTE----TVENMIKNALKAL 198 >gi|160889167|ref|ZP_02070170.1| hypothetical protein BACUNI_01588 [Bacteroides uniformis ATCC 8492] gi|156861174|gb|EDO54605.1| hypothetical protein BACUNI_01588 [Bacteroides uniformis ATCC 8492] Length = 200 Score = 151 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 106/205 (51%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G I L +ID G+ Y + + T + + + C L++ +R+D L Sbjct: 1 MIEYIRGGIAELSPATAIIDCNGLGYGVNISLNTYAAI-QGKKECKLYIYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F+LL SV G+G A +LS ++ +EL+ I +N+ ++ + GI +K Sbjct: 60 YGFADKQERELFLLLISVSGIGGNTARMILSALSPSELINVISTENATLLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + S V + + AI+AL LG+ Q + Sbjct: 120 AQRIIVDLKDKIKTGSVVAGNAGTIG---TLVSAANAQVQEEAIAALTMLGFAQAPSQKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+++LK+E + A Q+I+LAL+ + Sbjct: 177 VLAILKEEPS-APVEQVIKLALKRL 200 >gi|332977850|gb|EGK14603.1| crossover junction ATP-dependent DNA helicase RuvA [Desmospora sp. 8437] Length = 204 Score = 150 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 92/204 (45%), Gaps = 6/204 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + + ++++ GV Y+I+C + G+ T++ +R+D L Sbjct: 1 MIEFIRGTVAYRATEAIVVETGGVGYLIFCTHPLE---WEEGEEVTVYTHQVIREDAHTL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F LL V G+G +VA+ V LV ++ ++ + + ++PG+ K Sbjct: 58 YGFRERQVRDLFRLLLEVSGIGPKVALAVTGSGDPGRLVNAVEQEDLRFLTKLPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + S AI AL LGY +++AT A Sbjct: 118 AQRIVLDLKDKLKKAGFSESTFSDVPVGISGEVARAGSA--EAIEALQALGYNEEEATRA 175 Query: 181 VVSVLKK-EKNIADDSQIIRLALR 203 V K + + Q IR AL+ Sbjct: 176 VAMARKDFGEEEPELDQWIRRALQ 199 >gi|210635285|ref|ZP_03298481.1| hypothetical protein COLSTE_02412 [Collinsella stercoris DSM 13279] gi|210158446|gb|EEA89417.1| hypothetical protein COLSTE_02412 [Collinsella stercoris DSM 13279] Length = 208 Score = 150 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 50/207 (24%), Positives = 99/207 (47%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + +IDV GV + + T + L ++G L+ +R+D L Sbjct: 1 MISQLHGTVAEATPSMAVIDVNGVGFELGISGTTAAGLPQVGGKVLLYTRMVVREDSCTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L +V GVGA++A+ +L+ + +L ++ ++ K +A +PG+ K Sbjct: 61 FGFASKDERTMFDKLVAVSGVGAKLALAILTTFSVPQLYAVVMAEDDKGMATVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI--CSMPSFAINAISALVNLGYGQDQAT 178 A R++ ELKG S+ ++ + P+ +A +AL+++G+ + + Sbjct: 121 AQRLILELKGAFSKDRSLAGSAVAASIPLPLDVARPVAPNAMDDASAALLSMGFTPAEVS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ + ++ AL+ + Sbjct: 181 LALS---GYDGADMRVEDLLAAALKRL 204 >gi|313159381|gb|EFR58745.1| Holliday junction DNA helicase RuvA [Alistipes sp. HGB5] Length = 194 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 95/205 (46%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + Y +ID GV Y ++ + T S + + L+V +R+D L Sbjct: 1 MYEYISGPVAEVAPAYAVIDAGGVGYYLHISLETFSAIEHT-ETARLYVHYVVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F L SV GVG A +LS + EL I N+ ++ + G+ +K Sbjct: 60 YGFATKTERELFRHLISVSGVGGNTARMILSTYSPRELQGIITSGNAVLLKNVKGLGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ EL GK L + N A++ALV LG+ + A A Sbjct: 120 AQKIIVELSGKLTGLGDADAALPAAGN---------GEKLEEALAALVMLGFAKTAAEKA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +L++ A ++R+ L+++ Sbjct: 171 LRGILRENP-GASVEDLVRMGLKSL 194 >gi|307244215|ref|ZP_07526330.1| Holliday junction DNA helicase RuvA [Peptostreptococcus stomatis DSM 17678] gi|306492365|gb|EFM64403.1| Holliday junction DNA helicase RuvA [Peptostreptococcus stomatis DSM 17678] Length = 203 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 61/202 (30%), Positives = 101/202 (50%), Gaps = 9/202 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG IKG +E + DYVLI+ + Y + TLS L + GD ++ + +R+D I L Sbjct: 1 MIGYIKGTVEYIGIDYVLIENNEIGYKLNASSNTLSQLNE-GDRVKVYTKMIVREDDISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF S + + F LL SV +G ++ + +LS T ++L I ++K +++ PG+ K Sbjct: 60 CGFYSKEELEMFNLLTSVSKIGTKLGLAILSFATPSQLHLYISTSDTKTLSKAPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + LS + + + + + AI AL+ LGY ++ A Sbjct: 120 AERMVLELKDRLGKLSISGEDFVG-----KPTVSMPTTSDGEAIDALIALGYTGQESKVA 174 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 V V + I++ AL Sbjct: 175 VDFVKQ---PGMGVEDIVKKAL 193 >gi|255011116|ref|ZP_05283242.1| Holliday junction DNA helicase RuvA [Bacteroides fragilis 3_1_12] gi|313148926|ref|ZP_07811119.1| holliday junction DNA helicase ruvA [Bacteroides fragilis 3_1_12] gi|313137693|gb|EFR55053.1| holliday junction DNA helicase ruvA [Bacteroides fragilis 3_1_12] Length = 201 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 103/205 (50%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I L +ID G+ Y + + T S + + C L++ +R+D L Sbjct: 1 MIEYIKGEIAELSPATAVIDCNGLGYAVNISLNTYSAI-QGKSSCKLYIYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ +R+ F+LL SV G+G A +LS ++ ELV I +N+ ++ + GI +K Sbjct: 60 YGFVDKQERELFLLLISVSGIGGNTARMILSALSPAELVNVISTENANMLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + + + A++AL LG+ + Sbjct: 120 AQRVIVDLKDKIKTGAMAATAVGGAAGALLPAM--NAEVQEEAVAALTMLGFAAAPSQKV 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+++LK+E + A ++I+LAL+ + Sbjct: 178 VLAILKEEPD-APVEKVIKLALKRL 201 >gi|322382934|ref|ZP_08056766.1| Holliday junction DNA helicase RuvA-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153054|gb|EFX45512.1| Holliday junction DNA helicase RuvA-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 207 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 105/205 (51%), Gaps = 2/205 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + DYV+IDV GV Y ++C + G+ TLF+ H+R+D L Sbjct: 1 MIDYLRGQLAVREMDYVVIDVHGVGYQVFCS-NPFGISAREGEEVTLFIHYHVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++ F L V G+G +VA+G+L+ ++ +I +N + ++PGI K Sbjct: 60 FGFTTREEQTLFRKLIEVSGIGPKVALGILTGGRPDAVIAAIQQENVGFLTKLPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K L + + +++ + +A SM A AL+ LGY + +A Sbjct: 120 AQRIILDLKDKLGLLPASIVDEVAVLTA-EAERNSMEGCWAEAKQALLALGYTETEADRT 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + K K + +LAL+A+ Sbjct: 179 WHLIQKDVKPADPVDTVTKLALKAL 203 >gi|255015865|ref|ZP_05287991.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 2_1_7] Length = 196 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 102/205 (49%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I L ++++ G+ Y + + T S G +++ +R+D L Sbjct: 1 MIEYIKGEIVELTPTRMILECGGIGYELNISLNTYSAFGS-KTTGKIYIYEVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++R+ F+LL SV GVG A +LS + +ELV+ I +N + + GI +K Sbjct: 60 FGFAEKIERELFLLLTSVSGVGPNTARMILSSLPPSELVQVIGSKNEAALTAVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + S+ S + A++ALV LG+ + + A Sbjct: 120 AQRILVDLKNKVKPMESMAGNLPEAS-------VSNGAVTEEAVAALVMLGFQKAASQKA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++LK +A Q+I+ ALR + Sbjct: 173 VSAILKGSPTLA-VEQVIKTALRML 196 >gi|56963319|ref|YP_175050.1| Holliday junction DNA helicase RuvA [Bacillus clausii KSM-K16] gi|81366439|sp|Q5WHR6|RUVA_BACSK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|56909562|dbj|BAD64089.1| holliday junction DNA helicase RuvA [Bacillus clausii KSM-K16] Length = 199 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 96/205 (46%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKGN+ + Y++++ G+ + IYC + + + ++R+D RL Sbjct: 1 MIDYIKGNLVAVEPAYLVVEANGIGFQIYC-ANPYRFINDLNREVVVPTHHYVREDSQRL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L +V G+G + A+ +L+ +++ +I ++ ++ + PG+ K Sbjct: 60 FGFTTRTERLLFEKLLNVSGIGPKGALAILASGEPEDIIHAIEQEDEALLVRFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK ++ +++ A +A+ AL LGY + + Sbjct: 120 ARQIILDLKGKLDDMAPMLEPAAG------ADKQQKNPQLEDALEALRALGYVEKELKKV 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + + IR AL + Sbjct: 174 EKQLKAE---TLETDEYIRRALALM 195 >gi|103485830|ref|YP_615391.1| Holliday junction DNA helicase RuvA [Sphingopyxis alaskensis RB2256] gi|123380148|sp|Q1GWB4|RUVA_SPHAL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|98975907|gb|ABF52058.1| Holliday junction DNA helicase RuvA [Sphingopyxis alaskensis RB2256] Length = 199 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 67/206 (32%), Positives = 109/206 (52%), Gaps = 8/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+ G ++ + +IDV GV Y++ RTL LG +G T+ E + +D +RL Sbjct: 1 MIAKLTGRLDSNGAGHAVIDVGGVGYLVEASARTLDALGAVGGEVTIHTEMLVGEDFLRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF +R WF LL SVQGVGA+VA+ +LS + +L ++ +S +IA+ G+ K+ Sbjct: 61 LGFARAEERDWFRLLTSVQGVGAKVALAILSALEVADLQRALASGDSAMIARANGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI ELK KA +L + + + +AI+AL LG+ +A+ A Sbjct: 121 AQRITHELKDKAGALGGISGSGPAL--------SAAAGPVGDAIAALTGLGFKPGEASAA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + ++ A ++R+AL+ + Sbjct: 173 VAAANEELGADASLDALVRVALKKAA 198 >gi|145640257|ref|ZP_01795841.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae R3021] gi|145274843|gb|EDK14705.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae 22.4-21] Length = 181 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 56/181 (30%), Positives = 91/181 (50%), Gaps = 1/181 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L++VQGV Y + P+ + L +IG TLF +R+D L Sbjct: 1 MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF DR F L GVG ++A+ +LS ++ + +I + + +IPG+ K Sbjct: 61 FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAHAIEREELSKLTKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKGK + S + + + + S + AISAL+ LGY +A Sbjct: 121 AERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESSSDEAISALIALGYKPAEAEK 180 Query: 180 A 180 Sbjct: 181 W 181 >gi|329945621|ref|ZP_08293354.1| Holliday junction DNA helicase RuvA, N terminal domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328528624|gb|EGF55589.1| Holliday junction DNA helicase RuvA, N terminal domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 218 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 54/213 (25%), Positives = 98/213 (46%), Gaps = 9/213 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +I+ GV I TLS L +IG+ + E +R+D + L Sbjct: 1 MIASLRGTVLSVGLTGAVIETGGVGMSIQATPTTLSGL-RIGEEVLVHTELVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L S +GVGA++A+ +L+ T L +I Q+ + ++PG+ K Sbjct: 60 FGFTDVDERDSFRTLMSAKGVGAKLALAMLAVHTPNMLRRAIASQDVAALTRVPGLGPKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI-----CSMPSFAINAISALVNLGYGQD 175 A R++ ++ K ++ K + + ++ALV LG+ + Sbjct: 120 AQRVILDVADKLGPVTGDDADTAMPAAKAIGDKGVETFSEGAQPSADVVAALVQLGWNEA 179 Query: 176 QATTAVVSVL---KKEKNIADDSQIIRLALRAI 205 A AV +V + D + ++R +LR + Sbjct: 180 SARQAVTAVEADYAEAGENPDMAALLRASLRWL 212 >gi|225018933|ref|ZP_03708125.1| hypothetical protein CLOSTMETH_02884 [Clostridium methylpentosum DSM 5476] gi|224948277|gb|EEG29486.1| hypothetical protein CLOSTMETH_02884 [Clostridium methylpentosum DSM 5476] Length = 202 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 64/210 (30%), Positives = 98/210 (46%), Gaps = 13/210 (6%) Query: 1 MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MI I+G +E L +ID G+ Y I + T S L K G L+ ++R+D Sbjct: 1 MIYSIQGELELLTPADNHFLAVIDCGGIGYEIRTTMTTASQL-KQGGKAKLYTYLNVRED 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 + LFGF +R F +L SV GVG + A+ +LS +T ++ + +SK + + GI Sbjct: 60 AVELFGFFDTEERNCFKMLISVSGVGPKAALSILSNVTPSQFALCVASGDSKSLTRAKGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 KIA RI+ ELK K + Q + + S A+SALV LGY + Sbjct: 120 GAKIAQRIVLELKDKISN----EQLAGGVTDSGSVALPSGSGNTAEAVSALVVLGYNKTD 175 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 A A L ++I+ L+A++ Sbjct: 176 AVQA----LSSYPADTPVEELIKAGLKALA 201 >gi|262384145|ref|ZP_06077281.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 2_1_33B] gi|262295043|gb|EEY82975.1| Holliday junction DNA helicase RuvA [Bacteroides sp. 2_1_33B] Length = 196 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 102/205 (49%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I L ++++ G+ Y + + T S G +++ +R+D L Sbjct: 1 MIEYIKGEIVELTPTRMILECGGIGYELNISLNTYSAFGN-KTTGKIYIYEVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++R+ F+LL SV GVG A +LS + +ELV+ I +N + + GI +K Sbjct: 60 FGFAEKIERELFLLLTSVSGVGPNTARMILSSLPPSELVQVIGSKNEAALTAVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + S+ S + A++ALV LG+ + + A Sbjct: 120 AQRILVDLKNKVKPMESMAGNLPEAS-------ISNGAVTEEAVAALVMLGFQKAASQKA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++LK +A Q+I+ ALR + Sbjct: 173 VSAILKGSPTLA-VEQVIKTALRML 196 >gi|222109711|ref|YP_002551975.1| holliday junction DNA helicase ruva [Acidovorax ebreus TPSY] gi|254766958|sp|B9MCH5|RUVA_DIAST RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|221729155|gb|ACM31975.1| Holliday junction DNA helicase RuvA [Acidovorax ebreus TPSY] Length = 190 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 95/206 (46%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G + VL+D GV Y + + T L +G+ +L + +R+D L Sbjct: 1 MIGKLTGTLLEKNPPEVLVDCHGVGYEVLVSMSTFYNLPAVGERVSLLTQFIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +RQ F L + GVG R A+ +LS + +L +++ LQ + + ++PGI K Sbjct: 61 YGFGTAQERQAFRELIKISGVGPRTALSILSGMGVADLAQAVSLQEAGRLVKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R +++ + + + AL+ LGY +A A Sbjct: 121 AER-------------LLLELKGKLGADVGVRAHAANDNQADILQALLALGYNDKEAAAA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + ++ S+ I+LAL+++S Sbjct: 168 LKALPADVG----VSEGIKLALKSLS 189 >gi|108762337|ref|YP_633128.1| Holliday junction DNA helicase RuvA [Myxococcus xanthus DK 1622] gi|123374257|sp|Q1D2J5|RUVA_MYXXD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|108466217|gb|ABF91402.1| Holliday junction DNA helicase RuvA [Myxococcus xanthus DK 1622] Length = 202 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 97/205 (47%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + + IDV GV Y + L L G + V T +R+D L Sbjct: 1 MISRLRGTVLEKDLEDATIDVGGVGYRVNFSSLALGKLPAEGQPVDVRVRTVVREDAFDL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ + + F+LL SV VG R+++ VLS + ELV ++ +A+I G+ K Sbjct: 61 FGFLTKGEEEVFLLLNSVSRVGPRLSLMVLSGMEVPELVAALSRGEVARLAKIHGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K ++ ++ + +SAL+NLGY Q QA A Sbjct: 121 AERLVLELKDKVKTIHLEAVS-------RGTAPAAVSGAHADLVSALLNLGYKQPQAEKA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 ++ A + R AL+A+ Sbjct: 174 ADLASERLGAEATFQALFREALKAL 198 >gi|331269238|ref|YP_004395730.1| Holliday junction DNA helicase RuvA [Clostridium botulinum BKT015925] gi|329125788|gb|AEB75733.1| Holliday junction DNA helicase RuvA [Clostridium botulinum BKT015925] Length = 200 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 106/205 (51%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG L +DY++++ + Y IY T++ + I + +++E +R+D I + Sbjct: 1 MFEYIKGIYISLNKDYIVVESNNIGYKIYTSGNTMANMPNINEKVKIYIEQIVREDFIGI 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL++ +R F LL ++ GVG++ A+ +LS L +SI+ ++ K++ + PGI KI Sbjct: 61 YGFLTEEERAMFNLLLTINGVGSKAALSLLSISNVCSLKKSILSEDYKMLTKAPGIGKKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI ELK K + + + N + A+ AL+ LG+ Q +A A Sbjct: 121 AQRITLELKDKIEKIY---EDSLEEDNDIDNLSKNSTRKYDEALEALIALGFSQKEAEKA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + +II+ +LR + Sbjct: 178 LKDIDITKG----IEEIIKDSLRYL 198 >gi|260437054|ref|ZP_05790870.1| holliday junction DNA helicase RuvA [Butyrivibrio crossotus DSM 2876] gi|292810363|gb|EFF69568.1| holliday junction DNA helicase RuvA [Butyrivibrio crossotus DSM 2876] Length = 198 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 101/206 (49%), Gaps = 10/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G + + + ++++ GV Y I P + L IG ++ ++++D + L Sbjct: 1 MITYIVGELTYIDNNTIILEACGVGYEITVPESVIPSLPGIGSSIKIYTYQNVKEDALDL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ D + F L +V G+G + A+ +LS I+ EL ++I + K I PGI K Sbjct: 61 YGFLTMDDLKIFKQLITVNGIGPKGALSILSVISPDELRLAVISDDVKKIQSAPGIGSKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK K V + S A+SAL++LGY ++ +A Sbjct: 121 AQKLIIELKDKLK--------IEDVVYDLHDEKDIVKSVRDEAVSALISLGYSNSESVSA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V +++ E I++ AL+ ++ Sbjct: 173 VSALVITE--NMTSEDILKQALKKLA 196 >gi|295839916|ref|ZP_06826849.1| Holliday junction DNA helicase RuvA [Streptomyces sp. SPB74] gi|197696745|gb|EDY43678.1| Holliday junction DNA helicase RuvA [Streptomyces sp. SPB74] Length = 206 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 54/209 (25%), Positives = 99/209 (47%), Gaps = 9/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L +++V G+ + C TLS L +IG+ + +R+D + L Sbjct: 1 MIAFVSGPVAALGPTSAVVEVGGIGMAVQCTPHTLSTL-RIGEQARIATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ ++ L ++ + K + +PGI K Sbjct: 60 YGFADDDERQTFELLQTASGVGPRLAQAMLATLSPDALRLAVSTADEKALTAVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK + + ++ + +ALV LGY +A A Sbjct: 120 AQKLILELKDRLGQ-----PLGTGTLGAQRRAAAGPAPWTEQLHNALVGLGYQPREAEEA 174 Query: 181 VVSVLKKEKNIADDSQ---IIRLALRAIS 206 V +V + + + ++R AL+ ++ Sbjct: 175 VEAVTPQAEAQEGVPEIGPLLRAALQTLN 203 >gi|323142288|ref|ZP_08077120.1| Holliday junction DNA helicase RuvA [Phascolarctobacterium sp. YIT 12067] gi|322413172|gb|EFY04059.1| Holliday junction DNA helicase RuvA [Phascolarctobacterium sp. YIT 12067] Length = 200 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 9/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG +KG ++ L D +I+ GV Y ++ P L+ L + G L + T +R+D I Sbjct: 1 MIGSLKGTVDSLGIDNCIIETAGGVGYRVFMPAAQLAQLTQ-GASVRLHIHTAVREDAIV 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFLS F LL ++ GVG ++A+G+LS + ++ ++ KV+ ++PGI K Sbjct: 60 LYGFLSREYYDLFELLLTISGVGPKMALGILSAVKPDAFYLAVQSRDIKVLTKLPGIGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELK K +++ S + +A AI AL +LGY + Sbjct: 120 TAERLLLELKDKVGPVAAE-----SADSFGEAVAAGGSGAVAEAIEALASLGYSNSEIMP 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + + + +I++ ALR + Sbjct: 175 VIKKI--EGAETKTSEEILKQALRLM 198 >gi|333029161|ref|ZP_08457222.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacteroides coprosuis DSM 18011] gi|332739758|gb|EGJ70240.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacteroides coprosuis DSM 18011] Length = 199 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 107/205 (52%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + L ++D GV Y + + T S L + C L+++ +R+D +L Sbjct: 1 MIEYVKGELAELTPAQAVVDCNGVGYGVSISLNTYSAL-QGKKECKLYIQEVIREDAHQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF++ +R+ F+LL SV G+G A +LS ++ ELVE+I +N+K++ + GI K Sbjct: 60 FGFINKEERELFLLLNSVSGIGGNTARMILSALSPVELVEAIGTENTKLLQSVKGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K S + V ++ + + +ISAL LG+ Sbjct: 120 AERIIVDLKDKIKSTAIVENGHVTVGESTLSDM----DIYNESISALTMLGFAPAPTRKV 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ K+ N ++++LAL+ + Sbjct: 176 VHAIFKENPNH-TIEEVVKLALKRL 199 >gi|329957833|ref|ZP_08298308.1| Holliday junction DNA helicase RuvA [Bacteroides clarus YIT 12056] gi|328522710|gb|EGF49819.1| Holliday junction DNA helicase RuvA [Bacteroides clarus YIT 12056] Length = 200 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 105/205 (51%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I L +ID G+ Y + T + + + C L++ +R+D L Sbjct: 1 MIEYIKGEIAELSPASAIIDCNGLGYAANISLNTYAAI-QGKKSCKLYIYEAIREDAYIL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F+LL SV G+G A +LS ++ +EL+ I +N+ ++ + GI +K Sbjct: 60 YGFADKQERELFLLLISVSGIGGNTARMILSALSPSELINVISTENANLLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + V + A + A++AL LG+ Q + Sbjct: 120 AQRVIVDLKDKIKTGGMVSG---AADITGPAFTAANAQVQEEAVAALTMLGFAQAPSQKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+++LK++ N A Q+I+LAL+ + Sbjct: 177 VMAILKEDAN-APVEQVIKLALKRL 200 >gi|158320755|ref|YP_001513262.1| Holliday junction DNA helicase RuvA [Alkaliphilus oremlandii OhILAs] gi|167012655|sp|A8MHI4|RUVA_ALKOO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|158140954|gb|ABW19266.1| Holliday junction DNA helicase RuvA [Alkaliphilus oremlandii OhILAs] Length = 194 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 103/205 (50%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + + D ++++V G+ Y I+ I ++S + K GD T++ +R+D++ L Sbjct: 1 MFEYLKGTVADILIDKIIVEVNGIGYRIHSTIHSVSQI-KKGDAITVYTHLVVREDELSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+S + F L SV +G +VA G+LS T +L I+ ++ +++ PG+ K Sbjct: 60 YGFMSIEELDMFQKLISVSKIGPKVASGILSAYTPNKLSAYILSKDISALSKAPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + V + + + A+ AL+ LGY + ++ A Sbjct: 120 AERIILELKDKVDKTNVVYDYTLFNDDHKDD---------DEAVQALMALGYSKLESEKA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +V +I+ AL+ + Sbjct: 171 VEAVR---DMSLGTEDVIKRALKWL 192 >gi|302561707|ref|ZP_07314049.1| Holliday junction DNA helicase RuvA [Streptomyces griseoflavus Tu4000] gi|302479325|gb|EFL42418.1| Holliday junction DNA helicase RuvA [Streptomyces griseoflavus Tu4000] Length = 201 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 56/209 (26%), Positives = 97/209 (46%), Gaps = 14/209 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L D +++V GV + C TLS L ++G L +R+D + L Sbjct: 1 MIAFVSGTVAALAPDAAVVEVGGVGMAVQCTPNTLSTL-RVGQPAKLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F+LLQ+ GVG R+A +L+ + L ++ + K + +PGI K Sbjct: 60 YGFADDDERQVFVLLQTASGVGPRLAQAMLAVHSPDALRGAVATGDEKALTAVPGIGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK + V + +AL+ LGY +A A Sbjct: 120 AQKLLLELKDRLGE----------PVGAPAVGAPVTSGWRDQLHAALIGLGYATREADEA 169 Query: 181 VVSV---LKKEKNIADDSQIIRLALRAIS 206 V +V + + Q+++ AL+ ++ Sbjct: 170 VAAVTPQAEAAEGTPQVGQLLKAALQTLN 198 >gi|194468325|ref|ZP_03074311.1| Holliday junction DNA helicase RuvA [Lactobacillus reuteri 100-23] gi|194453178|gb|EDX42076.1| Holliday junction DNA helicase RuvA [Lactobacillus reuteri 100-23] Length = 199 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 52/206 (25%), Positives = 95/206 (46%), Gaps = 7/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G + + Y+++DV GV Y + ++V +R+D I L Sbjct: 1 MYEYLTGLVTVVAPQYIVVDVNGVGYKLLV-ANPYRYQEDRTKKVRVYVYQAVREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ FM L +V G+G + A+ +L+ LV++I N + + PGI K Sbjct: 60 FGFTDQNEKNLFMQLINVSGIGPKSALAILANPDHQGLVDAITNNNVSYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +L+ K + + A ++ S +A+ AL LGY + Sbjct: 120 ASQIVLDLRDKLTN----ESSSSLFATTQLAVDTTVNSELKDALEALAALGYKERDIKKV 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 +++K+E+ D + +R ALR ++ Sbjct: 176 QKTLMKEEQMATD--EYLRQALRLLN 199 >gi|313114599|ref|ZP_07800107.1| Holliday junction DNA helicase RuvA [Faecalibacterium cf. prausnitzii KLE1255] gi|310623063|gb|EFQ06510.1| Holliday junction DNA helicase RuvA [Faecalibacterium cf. prausnitzii KLE1255] Length = 203 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 93/206 (45%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G I + V++ GV Y CP L +G T++ + ++ + L Sbjct: 1 MIYCLTGKIVKKSMNAVVLSCGGVGYYAQCPASVAGALPGVGKEATIYTVMSVTENDVSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ + F +L +V GVG +V + +LS + + +I + K G+ K+ Sbjct: 61 YGFATEEQQACFEMLTAVSGVGPKVGLAILSVMEPDRVALAISAGDHKAFKAASGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K V + + AI+ALV+LGY Q +A A Sbjct: 121 AQRIVLELKDKVAK--GFVDGISLEDVAGASADTQASQGSSQAIAALVSLGYSQSEAALA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + +II+LALR+++ Sbjct: 179 VSKIDAALP----VEEIIKLALRSMA 200 >gi|325268803|ref|ZP_08135428.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella multiformis DSM 16608] gi|324988775|gb|EGC20733.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella multiformis DSM 16608] Length = 246 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 59/209 (28%), Positives = 98/209 (46%), Gaps = 9/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMR----QD 56 MI I+G + L +++ GV Y + + T S L + L+V + D Sbjct: 42 MIEYIRGELADLTPALAVVEAHGVGYALNISLNTYSAL-QGKTTVKLYVHEAIMTGGRDD 100 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF S +R + LL +V GVGA A +LS +T EL I + K++ + GI Sbjct: 101 SYTLYGFASRQERSLYRLLITVSGVGANTARMILSSLTPAELCNVIANADEKMLKTVKGI 160 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 ++ A RI+ +LK K + D V+ + + A+SAL LG+ Sbjct: 161 GLRTAQRIIVDLKDKIMQ---SGIADELHVSSQPGTPAVDTAIKDEAVSALTMLGFSPAP 217 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + VVS+L + ++ Q+++LAL+ I Sbjct: 218 SAKVVVSILTDQPDLP-VEQVVKLALKMI 245 >gi|307266570|ref|ZP_07548102.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter wiegelii Rt8.B1] gi|306918424|gb|EFN48666.1| Holliday junction DNA helicase RuvA [Thermoanaerobacter wiegelii Rt8.B1] Length = 187 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 101/205 (49%), Gaps = 20/205 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G IE + +DYV+ID G+ ++ P TL L G+ L+ HMR+D +++ Sbjct: 1 MIEYIRGMIEDIGQDYVVIDFMGIGIKVFVPFSTLKVLPSKGNITKLYTYLHMREDGLQI 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F L SV GVG + A+ +LS ++ V+++ + + K + PGI K Sbjct: 61 FGFKTKEELDLFEKLLSVSGVGPKGALSILSVVSIDNFVKAVNVGDYKALTIAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + + +F+ A+ AL+ LGY + +A A Sbjct: 121 AERIILELKDKLPK---------------KIVLEGDNNFSNEALEALLALGYTKSEAIYA 165 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + ++ AL+ + Sbjct: 166 LADI-----TCDSVEEAVKQALKKL 185 >gi|294010085|ref|YP_003543545.1| Holliday junction resolvasome DNA-binding subunit [Sphingobium japonicum UT26S] gi|292673415|dbj|BAI94933.1| Holliday junction resolvasome DNA-binding subunit [Sphingobium japonicum UT26S] Length = 202 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 107/206 (51%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+KG ++ D+ +IDV GV Y++ RTL+ LG +G+ T+ E + D IRL Sbjct: 1 MIAKLKGRLDSTGLDHAIIDVGGVGYLVGASSRTLAALGPVGEAVTVHTEMLVSDDAIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF +R WF LL VQGVG+RVA+ +LS + EL ++ + +IA+ G+ K+ Sbjct: 61 VGFARAEERDWFRLLTGVQGVGSRVALAILSALEPVELHRAVAAGDKAMIARANGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI ELK K + + +AISAL NLG+ +A+ A Sbjct: 121 AQRIANELKDKIG-----AAPMPAGAVGAGFAALPTGGHSADAISALQNLGFKPAEASIA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + ++ A ++RLALR + Sbjct: 176 VAAAEEELGEDASLDALVRLALRKAA 201 >gi|72162493|ref|YP_290150.1| Holliday junction DNA helicase subunit RuvA [Thermobifida fusca YX] gi|90136068|sp|Q47N42|RUVA_THEFY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|71916225|gb|AAZ56127.1| Holliday junction DNA helicase subunit RuvA [Thermobifida fusca YX] Length = 202 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 104/206 (50%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + +IDV GV ++C L+ L ++G+ T+ +R+D + L Sbjct: 1 MIAFLSGRVVSRGAETAVIDVGGVGMTVHCTPAALARL-RVGEEATVATALVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF D +R F LQ+ GVG R+A+ +LS T L +I +++ + ++PGI K Sbjct: 60 FGFADDDERDTFERLQTASGVGPRLALAMLSVHTPDALRRAIATEDTAALTRVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELKGK + EQ+ + ++ +S LVNLG+ +A A Sbjct: 120 AQRIVLELKGKLGEPGGD-----TAATPEQSAAAAPRNWRAQVVSGLVNLGWSTREAEAA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 +V + D + ++R ALR +S Sbjct: 175 ADAVAAEAGEQPDVAALLRSALRRLS 200 >gi|254431586|ref|ZP_05045289.1| Holliday junction DNA helicase RuvA [Cyanobium sp. PCC 7001] gi|197626039|gb|EDY38598.1| Holliday junction DNA helicase RuvA [Cyanobium sp. PCC 7001] Length = 214 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 55/211 (26%), Positives = 98/211 (46%), Gaps = 6/211 (2%) Query: 1 MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MIG ++G+I ++ +L+ +GV Y + R L G L + +R+D Sbjct: 1 MIGWLQGDIADPWQHDKRCGLLLLCRGVGYEVQVSQRDWRRLPPPGSPLALHIHQSIRED 60 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF + +R F L +V GVG ++AMG+L + ELV++I+ + + + Q PG+ Sbjct: 61 AWTLYGFTARQERDLFRDLVAVSGVGPQMAMGLLGALEMEELVQAIVQPDLRRLCQAPGV 120 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 + A R+ EL+ + + + + EQ + S + LV+LG+ + Sbjct: 121 GKRTAERLAVELRVRLQERYLGAVETAAEADPEQLPGLADGS-RDDICGTLVSLGFADLE 179 Query: 177 ATTAVVSVLKK-EKNIADDSQIIRLALRAIS 206 A+ +V + A IR LR +S Sbjct: 180 IHRALRAVASQGLTAEASTEDWIRDCLRWLS 210 >gi|283853683|ref|ZP_06370914.1| Holliday junction DNA helicase RuvA [Desulfovibrio sp. FW1012B] gi|283570924|gb|EFC18953.1| Holliday junction DNA helicase RuvA [Desulfovibrio sp. FW1012B] Length = 201 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 11/207 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG ++G + E + ++ GV Y + P + L G LFV T +R+D + Sbjct: 1 MIGYVEGRVLARRERWAIVLTPGGVGYELELPDPVAAALPPQGGQVCLFVHTVVREDALE 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF + DR+ F L + +G R A+ +LSR T +L+ + ++ + ++PGI K Sbjct: 61 LFGFATLDDRETFRTLIGITKLGPRTALAILSRFTTEDLLRIVATGDADALVRVPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI EL K V + + I+ L NLGY A+ Sbjct: 121 SAQRIFIELTYKLEGKGPVSAGPHPAIG---------GGVLADVIAGLTNLGYPDADASR 171 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 +VL+ E ++ D +Q +R AL+ ++ Sbjct: 172 VAGAVLEAEPDL-DVAQALRQALKRLA 197 >gi|170759601|ref|YP_001788391.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A3 str. Loch Maree] gi|229560024|sp|B1L0B3|RUVA_CLOBM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|169406590|gb|ACA55001.1| Holliday junction DNA helicase RuvA [Clostridium botulinum A3 str. Loch Maree] Length = 197 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 104/205 (50%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +Y+DY++I+ + Y IY T++ L IG+ L+ E +R+D I + Sbjct: 1 MYEYIKGKYIDMYKDYIVIENNNIGYKIYTSGSTMAKLPSIGENIMLYTEQIVREDFIGI 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + F LL ++ GVGA+ A+ +LS + L +I + + K I + PGI K Sbjct: 61 YGFLTKDELSMFKLLLTINGVGAKAALSLLSISNVSTLKYAIKVGDEKTITRAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K +++ + + + A++ALV LGY + +A+ Sbjct: 121 AQRIILELKDKIE------IDISEEDDEQIINKVTDDKKVLEAVAALVTLGYSEKEASKV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + K QII+ AL+ + Sbjct: 175 INLCDKNN----SLEQIIKEALKHL 195 >gi|327475180|gb|AEA77185.1| holliday junction DNA helicase [Bacillus sp. 15.4] Length = 202 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 100/205 (48%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G ++ + +YV+++ G+ Y I+ L + T++ H+R+D + L Sbjct: 1 MYEYINGTVKRVGPEYVVLENGGIGYQIFTSNPFLFSKYE-NQEKTIYTYQHVREDILAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS ++ F+ L +V G+G + A+ +L+ +++ +I ++ + + + PG+ K Sbjct: 60 YGFLSMEEKLLFIKLLNVSGIGPKGALAILASGAPEQVITAIEGEDERFLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK + ++ K++ + + A AL LGY + + Sbjct: 120 ARQMILDLKGKLQDVVPDYFPNLFNEGKQE-TVSNNDELIDEAALALKALGYSEREIKRV 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + K ++I+ AL+ + Sbjct: 179 TPKLSSQGK---TTDELIKDALKLL 200 >gi|52081253|ref|YP_080044.1| Holliday junction DNA helicase RuvA [Bacillus licheniformis ATCC 14580] gi|52786633|ref|YP_092462.1| Holliday junction DNA helicase RuvA [Bacillus licheniformis ATCC 14580] gi|319644780|ref|ZP_07999013.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus sp. BT1B_CT2] gi|81384931|sp|Q65GP5|RUVA_BACLD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|52004464|gb|AAU24406.1| Holliday junction DNA helicase [Bacillus licheniformis ATCC 14580] gi|52349135|gb|AAU41769.1| RuvA [Bacillus licheniformis ATCC 14580] gi|317392589|gb|EFV73383.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus sp. BT1B_CT2] Length = 201 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 97/205 (47%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG I+ + Y++I+ G+ Y I+ P + K T++ ++R+D L Sbjct: 1 MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPNPFIY---KKNSKETIYTYHYVREDTNAL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F + +V G+G + A+ +L+ ++E+I ++ + + PG+ K Sbjct: 58 YGFSTREEKMLFTKMLNVTGIGPKGALAILASGDPGAVIEAIENEDEAFLVKFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + D+ + + I + A+ AL LGY + Sbjct: 118 ARQIILDLKGKLADAVPEIAADLFNHEERE-QIHEAATALEEALEALRALGYSDREIKKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + K+E Q ++ AL+ + Sbjct: 177 QPHLKKEE--ALSTDQYVKKALQKL 199 >gi|89053456|ref|YP_508907.1| Holliday junction DNA helicase RuvA [Jannaschia sp. CCS1] gi|123094354|sp|Q28TT0|RUVA_JANSC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|88863005|gb|ABD53882.1| Holliday junction DNA helicase RuvA [Jannaschia sp. CCS1] Length = 223 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 117/223 (52%), Gaps = 20/223 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ D+ LIDV GV Y+++C RTL+ L G+ L+ + +R+D ++L Sbjct: 1 MIGKLTGRLDYKGSDHALIDVGGVGYVVHCSDRTLAALPARGEVVALYTDLLVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLS +++W LL SVQGVGA+ +M +L + +I L ++ I PG+ K+ Sbjct: 61 FGFLSPYEKEWHRLLTSVQGVGAKASMAILGTLGVEGAARAITLGDATAIKAAPGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC-----------------SMPSFAINA 163 A R++ ELK KA ++ ++ ++ + + A Sbjct: 121 AQRVVMELKDKAPAVMAMGGTLDDAMDDVVDDMPGESAAPAPAPQPRAPKRPASNAQAEA 180 Query: 164 ISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 +SAL NLGYG A +V + ++ ++ ++IR ALR ++ Sbjct: 181 LSALQNLGYGPSDAA---QAVAQAAESASNTPELIRAALRLLA 220 >gi|304407532|ref|ZP_07389184.1| Holliday junction DNA helicase RuvA [Paenibacillus curdlanolyticus YK9] gi|304343483|gb|EFM09325.1| Holliday junction DNA helicase RuvA [Paenibacillus curdlanolyticus YK9] Length = 210 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 53/209 (25%), Positives = 97/209 (46%), Gaps = 6/209 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + +Y+++DV+ V Y ++ P + + T+++ H+R+D I+L Sbjct: 1 MIDFLKGPVAHWETEYIVLDVRDVGYRVFTPNP--YGFARSNEPVTVYIHHHVREDAIQL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++ F L V G+G RVA+GVL+ +V +I +N + ++PGI K Sbjct: 59 FGFATREEQTMFRKLLDVSGIGPRVALGVLAGSRPEAIVAAIQQENVTFLTKLPGIGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC----SMPSFAINAISALVNLGYGQDQ 176 A R++ +LK K + D S + + ++ A AL LGY + Sbjct: 119 AQRMILDLKDKLGNAPLAFGADPSVWDTNEGKGTTGEQAIAGAWPEAREALGALGYTAAE 178 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A + +++ AL+ + Sbjct: 179 LDKAFEGLRASITAEESVDSLMKRALQQL 207 >gi|253681607|ref|ZP_04862404.1| holliday junction DNA helicase RuvA [Clostridium botulinum D str. 1873] gi|253561319|gb|EES90771.1| holliday junction DNA helicase RuvA [Clostridium botulinum D str. 1873] Length = 197 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 108/205 (52%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG L +DY++++ + Y IY T+S + I + +++E +R+D + + Sbjct: 1 MFEYIKGIYISLNKDYIVVESNNIGYKIYTSGNTMSNMPNINEEVKIYIEQIVREDFMGI 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL++ +R F LL ++ GVG++ A+ +LS + L +SI+ ++ K++ + PGI KI Sbjct: 61 YGFLTEEERAMFNLLLTINGVGSKAALSLLSISNVSNLKKSILSEDYKMLTKAPGIGKKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI ELK K + +D+ ++K ++ AL+ LG+ Q +A A Sbjct: 121 AQRITLELKDKIEKIYEDNLEDIDNLSKNSTRK------YDESLEALIALGFSQKEAEKA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + V +II+ +LR + Sbjct: 175 LKDV----DMSKGIEEIIKNSLRYL 195 >gi|299769122|ref|YP_003731148.1| Holliday junction DNA helicase RuvA [Acinetobacter sp. DR1] gi|298699210|gb|ADI89775.1| Holliday junction DNA helicase RuvA [Acinetobacter sp. DR1] Length = 199 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + L VL++V GV Y I P+ T L K G TL+ +R+D +L Sbjct: 1 MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ F L V GVG ++A+G+LS ++ LV +I + + ++PG+ K Sbjct: 60 YGFSDAQEKIIFRTLLKVNGVGPKMALGILSTLSVELLVHTIEHDDINTLIKVPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+M EL+ + +L+ Q S + S A +AL +LGY +A A Sbjct: 120 AERLMIELRDRFKTLA----QGTSSTTTLPQIQFAANSPVAEAEAALQSLGYKPLEAQKA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +V AD IIR AL+++ Sbjct: 176 VAAVKADYTESAD---IIRAALKSM 197 >gi|169795065|ref|YP_001712858.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii AYE] gi|213158273|ref|YP_002320324.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii AB0057] gi|215482614|ref|YP_002324806.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii AB307-0294] gi|239501033|ref|ZP_04660343.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii AB900] gi|260556549|ref|ZP_05828767.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii ATCC 19606] gi|301344817|ref|ZP_07225558.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii AB056] gi|301510228|ref|ZP_07235465.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii AB058] gi|301595121|ref|ZP_07240129.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii AB059] gi|332851087|ref|ZP_08433196.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii 6013150] gi|332869664|ref|ZP_08438852.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii 6013113] gi|226698802|sp|A3M7W0|RUVA_ACIBT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226725429|sp|B7GYB6|RUVA_ACIB3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226725430|sp|B7I5A8|RUVA_ACIB5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229470533|sp|B0VDI6|RUVA_ACIBY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|169147992|emb|CAM85855.1| holliday junction helicase subunit A [Acinetobacter baumannii AYE] gi|193078070|gb|ABO13004.2| holliday junction helicase subunit A [Acinetobacter baumannii ATCC 17978] gi|213057433|gb|ACJ42335.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii AB0057] gi|213986860|gb|ACJ57159.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii AB307-0294] gi|260409808|gb|EEX03108.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii ATCC 19606] gi|332730251|gb|EGJ61576.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii 6013150] gi|332732566|gb|EGJ63799.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii 6013113] Length = 199 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 102/205 (49%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + L VL++V GV Y I P+ T L K G TL+ +R+D +L Sbjct: 1 MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ F L V GVG ++A+G+LS ++ LV +I + + ++PG+ K Sbjct: 60 YGFSDAQEKTIFRTLLKVNGVGPKMALGILSTLSVELLVHTIEHDDVNTLVKVPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+M EL+ + +L+ Q S S A +AL +LGY +A A Sbjct: 120 AERLMIELRDRFKTLA----QGTSSAAALPQIQFVSNSPVAEAEAALQSLGYKPLEAQKA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +V AD IIR AL+++ Sbjct: 176 VAAVKADYTESAD---IIRAALKSM 197 >gi|328957015|ref|YP_004374401.1| Holliday junction ATP-dependent DNA helicase RuvA [Carnobacterium sp. 17-4] gi|328673339|gb|AEB29385.1| Holliday junction ATP-dependent DNA helicase RuvA [Carnobacterium sp. 17-4] Length = 210 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 100/205 (48%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ Y ++ K+ + T++V +R+D I L Sbjct: 7 MYEYIKGIVTFVSPAYIVLETNGIGYQLFI-ANPFRFSSKLNEEITIYVHQAVREDAITL 65 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++Q ++ L SV G+G + + +L+ LV++I +++ + + PG+ K Sbjct: 66 YGFKDYTEKQLYLKLLSVSGIGPKSGLAILANDNHQGLVQAIENEDAAYLTKFPGVGKKT 125 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK L +V + + +++ + + + A+ AL LGY + Sbjct: 126 ASQIVLDLKGKLADL-TVAPLENAADYQQELVLSTNYNHVTEAMEALEALGYSAKEIKKI 184 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + K K +R ALR + Sbjct: 185 EPQIRKLNKE--STDAYLREALRLL 207 >gi|238926806|ref|ZP_04658566.1| crossover junction endodeoxyribonuclease [Selenomonas flueggei ATCC 43531] gi|238885338|gb|EEQ48976.1| crossover junction endodeoxyribonuclease [Selenomonas flueggei ATCC 43531] Length = 199 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 97/205 (47%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG +KG + DY L+DV V Y ++ +T + + L++ T++R+D I L Sbjct: 1 MIGFLKGKATHITSDYCLLDVHDVGYRVFISDQTRAHI-SPNAEVMLYIHTNVREDAILL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S + F+LL + G+G +VA G+LS T + + ++ K I ++PGI K Sbjct: 60 YGFFSREEYDLFLLLIGISGIGPKVAQGILSSATVNDFYCMVQQKDVKGITKLPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K S V + A AL+ LG+ + Sbjct: 120 AERILLELKDKL----SDVSVEDLPEGDNNVGAEIENGMVAEATEALLTLGFQDSEIQR- 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +++ + + ++IR AL + Sbjct: 175 ---VFRQKHSCQNTEELIRYALSEL 196 >gi|257055537|ref|YP_003133369.1| Holliday junction DNA helicase subunit RuvA [Saccharomonospora viridis DSM 43017] gi|256585409|gb|ACU96542.1| Holliday junction DNA helicase subunit RuvA [Saccharomonospora viridis DSM 43017] Length = 199 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 98/205 (47%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + + D+ +I+V GV + + TL L + G L+ +R+D + L Sbjct: 1 MISSIRGEVLAVGLDHAVIEVGGVGFTVQATPTTLGTL-RRGTEARLYTTLMVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF R+ F LLQ+V G+G R+AM L+ + +L ++ + + Q+PGI K Sbjct: 60 FGFADVESRELFGLLQTVSGIGPRLAMAALAVLEPEKLRRALADGDITTLTQVPGIGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K M + + ++ALV LG+ QA A Sbjct: 120 AERLIIELRDKV-------SAPMGGEPAPDEGTTVGSAVRADVVAALVGLGFSAKQAEQA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V + N D SQ++R AL + Sbjct: 173 VDKVSGEVPN--DTSQVLRAALATL 195 >gi|323341472|ref|ZP_08081713.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus ruminis ATCC 25644] gi|323091083|gb|EFZ33714.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus ruminis ATCC 25644] Length = 203 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 91/205 (44%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G I ++ Y++++ G+ Y+I +++ +R+++I L Sbjct: 1 MYEYLIGTITQVFPAYIVVENNGIGYLINV-ANPFRFKSDETKQEKIYLHQIVRENEIVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++Q F+ L SV G+G + A+ +L+ V ++ + + + PGI K Sbjct: 60 YGFSDFNEKQLFLKLISVSGIGPKSALAILANEDHNGFVSAVNNDDDAYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK L S + + + + A+ AL+ LGY + + Sbjct: 120 AKQIILDLKGKLGGLES--GKPLKGQQDLEIVAEQTSPYLKEALEALLALGYTKTEVKKT 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 +L + + +R ALR + Sbjct: 178 GRKLL--DFKGDSTDEYLRQALRLM 200 >gi|169632720|ref|YP_001706456.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii SDF] gi|229470531|sp|B0VT90|RUVA_ACIBS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|169151512|emb|CAP00277.1| holliday junction helicase subunit A [Acinetobacter baumannii] Length = 199 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 102/205 (49%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + L VL++V GV Y I P+ T L K G TL+ +R+D +L Sbjct: 1 MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVIREDAQQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ F L V GVG ++A+G+LS ++ LV +I + + ++PG+ K Sbjct: 60 YGFSDAQEKTIFRTLLKVNGVGPKMALGILSTLSVELLVHTIEHDDVNTLVKVPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+M EL+ + +L+ Q S S A +AL +LGY +A A Sbjct: 120 AERLMIELRDRFKTLA----QGTSSAAALPQIQFVSNSPVAEAEAALQSLGYKPLEAQKA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +V AD IIR AL+++ Sbjct: 176 VAAVKADYTESAD---IIRAALKSM 197 >gi|184159149|ref|YP_001847488.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii ACICU] gi|332875977|ref|ZP_08443763.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii 6014059] gi|229470530|sp|B2HWT2|RUVA_ACIBC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|183210743|gb|ACC58141.1| Holliday junction resolvasome, DNA-binding subunit [Acinetobacter baumannii ACICU] gi|322509062|gb|ADX04516.1| ruvA [Acinetobacter baumannii 1656-2] gi|323519043|gb|ADX93424.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii TCDC-AB0715] gi|332735843|gb|EGJ66884.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii 6014059] Length = 199 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 101/205 (49%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + L VL++V GV Y I P+ T L K G TL+ +R+D +L Sbjct: 1 MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ F L V GVG ++A+G+LS + LV +I + + ++PG+ K Sbjct: 60 YGFSDAQEKTIFRTLLKVNGVGPKMALGILSTLNVELLVHTIEHDDVNTLVKVPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+M EL+ + +L+ Q S S A +AL +LGY +A A Sbjct: 120 AERLMIELRDRFKTLA----QGTSSAAALPQIQFVSNSPVAEAEAALQSLGYKPLEAQKA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +V AD IIR AL+++ Sbjct: 176 VAAVKADYTESAD---IIRAALKSM 197 >gi|296331680|ref|ZP_06874149.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675361|ref|YP_003867033.1| Holliday junction DNA helicase [Bacillus subtilis subsp. spizizenii str. W23] gi|296151275|gb|EFG92155.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413605|gb|ADM38724.1| Holliday junction DNA helicase [Bacillus subtilis subsp. spizizenii str. W23] Length = 201 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 99/205 (48%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG I+ + Y++I+ G+ Y I+ P + K + T+F H+R+D L Sbjct: 1 MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPNPFIY---KERNQETIFTYHHIREDAFSL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F L +V G+G + A+ +L ++++I ++ + + PG+ K Sbjct: 58 YGFSTREEKALFTKLLNVTGIGPKGALAILGSGDPGAVIQAIENEDEAFLVKFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + + +++ + + + A+ AL LGY + + Sbjct: 118 ARQIILDLKGKLADVVPEMIENLFNHEERLEKQTAE-TALEEALEALRVLGYAEKEIKKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + KE Q ++ AL+ + Sbjct: 177 LPHL--KEDTGLTTDQYVKKALQKL 199 >gi|229918406|ref|YP_002887052.1| Holliday junction DNA helicase RuvA [Exiguobacterium sp. AT1b] gi|259495643|sp|C4L522|RUVA_EXISA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229469835|gb|ACQ71607.1| Holliday junction DNA helicase RuvA [Exiguobacterium sp. AT1b] Length = 195 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + + +Y+ +DV GV Y ++ P + + +F ++R+DQ L Sbjct: 1 MIEFVKGPVAYVCAEYITLDVSGVGYKVHVPNPFFYR--EQDEHVIVFTHHYVREDQQTL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R+ F L SV G+G + A+ +++ L+++I +N K + + PG+ K Sbjct: 59 YGFRSRRERELFNKLLSVSGIGPKGALAIVASGDIDALIDAIETENEKYLTKFPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A ++ +LKGK L+ + S A ALV LGY + + Sbjct: 119 AKQMALDLKGKLSELAPDYVPNEGLF-------AQGASELDEACEALVALGYSEREIAK- 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V L I I+ AL+ + Sbjct: 171 VRKALS--GEILTTDAYIKRALQLL 193 >gi|56751811|ref|YP_172512.1| Holliday junction DNA helicase RuvA [Synechococcus elongatus PCC 6301] gi|81301107|ref|YP_401315.1| Holliday junction DNA helicase RuvA [Synechococcus elongatus PCC 7942] gi|81561725|sp|Q5N128|RUVA_SYNP6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|123769196|sp|Q31KU1|RUVA_SYNE7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|56686770|dbj|BAD79992.1| holliday junction DNA helicase RuvA [Synechococcus elongatus PCC 6301] gi|81169988|gb|ABB58328.1| Holliday junction DNA helicase subunit RuvA [Synechococcus elongatus PCC 7942] Length = 207 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 57/212 (26%), Positives = 104/212 (49%), Gaps = 12/212 (5%) Query: 1 MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MIG ++G++ G+ + +L+DVQGV Y + P R+L L G +F +R+D Sbjct: 1 MIGYLQGSLAGVRKQSGRLLLLLDVQGVGYEVQTPARSLVELPAAGQSLQVFTHLQVRED 60 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 Q LFGFL +R F L SV G+G ++ + +L ++ ELV++I+ N++++++ PG+ Sbjct: 61 QWLLFGFLQMAERDLFRQLISVSGIGPQLGLALLDSLSLAELVQAIVAGNTRLLSRTPGV 120 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 K A R+ EL+ K S + + + L+ LGY + Sbjct: 121 GAKTAERLALELRSKLAEWREEAGLLPSAT------AAPIAAVQEDVEMTLLALGYNNRE 174 Query: 177 ATTAVVSVLKKE--KNIADDSQIIRLALRAIS 206 A+ ++ ++ ++ IR A+ +S Sbjct: 175 ILQALTAIAQENLVQSGQPAEDWIREAIAWLS 206 >gi|37522453|ref|NP_925830.1| Holliday junction DNA helicase RuvA [Gloeobacter violaceus PCC 7421] gi|44888383|sp|Q7NCU2|RUVA_GLOVI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|35213454|dbj|BAC90825.1| holliday junction DNA helicase [Gloeobacter violaceus PCC 7421] Length = 206 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 11/210 (5%) Query: 1 MIGKIKGNIEGLYE----DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MI ++G + + + +DV GV Y ++ RT+ L +IG+ LF +R+D Sbjct: 1 MITFVRGMLAEVGPRSGQSWATVDVGGVGYRVWTHARTVGKLPRIGEEVKLFTLMIVRED 60 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 ++LFGFL +R+ F L SV G+G R+ + +L + TELV++I+ N++ +A PG+ Sbjct: 61 AMQLFGFLEPGERELFGQLVSVSGIGPRMGLALLETLAPTELVQAILQGNTRALALAPGV 120 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 K A R+ EL+ + + AL+ LG+ + Sbjct: 121 GAKTAQRLALELRSRLSKWREESGLS-------AMGARASSRVYEEVELALLALGFAPGE 173 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ +V +R A+ +S Sbjct: 174 VVRALDAVAPAMAGEEQTEAWLRAAIAWLS 203 >gi|319442165|ref|ZP_07991321.1| Holliday junction DNA helicase RuvA [Corynebacterium variabile DSM 44702] Length = 214 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 58/211 (27%), Positives = 104/211 (49%), Gaps = 7/211 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + D+V+I+ GV Y+ RTL+ L + G+ + +R+D L Sbjct: 1 MIASLRGAVVDKGLDHVVIECAGVGYLCQATARTLADLPR-GEEVFVLTTMVVREDSQTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 + F R+ F L+QSV GVGAR+AM +LS +T E+ ++ + K + + PG+ ++ Sbjct: 60 YAFPDVASRELFALVQSVSGVGARMAMALLSVLTPAEIAAAVAEGDVKTLQRAPGVGKRL 119 Query: 121 ASRIMTELKGKAI--SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R+ +LKGK +++ V+ + + ALV LG+ + A Sbjct: 120 ADRMSVDLKGKLDAYAVAQPSGAPGDAVDLTSGDAAVDDAVTAQVVEALVGLGFPEASAA 179 Query: 179 TAVVSVLKK----EKNIADDSQIIRLALRAI 205 V S++ + + + D S ++R AL + Sbjct: 180 DTVTSLVAETGGGDGSSPDASVLLRSALSRL 210 >gi|119356229|ref|YP_910873.1| Holliday junction DNA helicase RuvA [Chlorobium phaeobacteroides DSM 266] gi|166230538|sp|A1BDH2|RUVA_CHLPD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|119353578|gb|ABL64449.1| Holliday junction DNA helicase subunit RuvA [Chlorobium phaeobacteroides DSM 266] Length = 200 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 56/202 (27%), Positives = 96/202 (47%), Gaps = 8/202 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG++ + +IDV GV Y + T L G L+ +R+D ++L Sbjct: 1 MFAYFKGSLVTALPEEAVIDVSGVAYRMLISATTFRQLPDEGSQVLLYAHLSVREDALQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +RQ F LL GVG ++A+ VLS + E+ E+I+ + + + G+ K Sbjct: 61 YGFFKEEERQLFRLLLLTSGVGPKLALAVLSGLQVPEVHEAIMANEPERLYGVSGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ EL+ K + L V +A+ ALV LG+ + A A Sbjct: 121 AARIILELRDKILKLPLVTPAAGKAAM-------PSHHVKDDAVHALVTLGFSRLLAQKA 173 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 V ++L+++ ++I+ AL Sbjct: 174 VSALLEEKPE-QSVEEVIKYAL 194 >gi|297198358|ref|ZP_06915755.1| Holliday junction DNA helicase RuvA [Streptomyces sviceus ATCC 29083] gi|197714415|gb|EDY58449.1| Holliday junction DNA helicase RuvA [Streptomyces sviceus ATCC 29083] Length = 201 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 56/209 (26%), Positives = 96/209 (45%), Gaps = 14/209 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G I L D +++V GV + C TLS L ++G L +R+D + L Sbjct: 1 MIAFVSGTIAALAPDTAVVEVGGVGMAVQCTPNTLSTL-RLGQPAKLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ D +RQ F LLQ+ GVG R+A +L+ L ++ + K + +PGI K Sbjct: 60 YGFVDDDERQIFELLQTASGVGPRLAQAMLAVHAPDALRRAVATGDEKALIAVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK + + + +AL+ LGY +A A Sbjct: 120 AQKLLLELKDRLGE----------PIGAPAIGAPVTQGWRDQLHAALIGLGYATREADEA 169 Query: 181 VVSV---LKKEKNIADDSQIIRLALRAIS 206 V +V + + Q+++ AL+ ++ Sbjct: 170 VTAVTPQAEASEGTPQVGQLLKAALQTLN 198 >gi|300858594|ref|YP_003783577.1| holliday junction resolvasome helicase subunit A [Corynebacterium pseudotuberculosis FRC41] gi|300686048|gb|ADK28970.1| Holliday junction resolvasome helicase subunit A [Corynebacterium pseudotuberculosis FRC41] gi|302206306|gb|ADL10648.1| Holliday junction ATP-dependent DNA helicase ruvA [Corynebacterium pseudotuberculosis C231] gi|302330863|gb|ADL21057.1| Holliday junction ATP-dependent DNA helicase ruvA [Corynebacterium pseudotuberculosis 1002] gi|308276548|gb|ADO26447.1| Holliday junction ATP-dependent DNA helicase ruvA [Corynebacterium pseudotuberculosis I19] Length = 203 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 105/205 (51%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +I+ GV Y + TLS + + G+ + +R+D L Sbjct: 1 MIVSLRGTVASIGLGSAVIECNGVGYEVLASPSTLSQM-RRGEEFFVLTTMVVREDSQTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF SD RQ F LLQ+V G+G ++A+ S ++A +L ++I Q++K + +IPG+ ++ Sbjct: 60 YGFASDEARQMFTLLQTVSGLGPKLALAAQSVLSAVDLAQAIANQDAKTLQRIPGVGKRV 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + D + + + AL+ LG+ + A A Sbjct: 120 AERIIVDLKDKVSAFI----TDGGATPASGGSSSATSDVSAQVLEALLGLGFTEKVAEPA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + SVL + N A SQ +RLAL + Sbjct: 176 LNSVLSESPN-ATTSQALRLALSTL 199 >gi|21220019|ref|NP_625798.1| Holliday junction DNA helicase RuvA [Streptomyces coelicolor A3(2)] gi|20455268|sp|Q9L290|RUVA_STRCO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|6822215|emb|CAB70921.1| holliday junction DNA helicase [Streptomyces coelicolor A3(2)] Length = 201 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 56/209 (26%), Positives = 95/209 (45%), Gaps = 14/209 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L D +I+V GV + C TLS L ++G L +R+D + L Sbjct: 1 MIAFVSGTVAALAPDAAVIEVGGVGMAVQCTPNTLSTL-RLGKPAKLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ L ++ + K + +PGI K Sbjct: 60 YGFADDDERQVFELLQTASGVGPRLAQAMLAVHQPDALRRAVATGDEKALTAVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK + + + +AL+ LGY +A A Sbjct: 120 AQKLLLELKDRLGE----------PIGAPAVGAPVSTGWRDQLHAALIGLGYATREADEA 169 Query: 181 VVSVLKKEKNIADDSQ---IIRLALRAIS 206 V +V + + Q +++ AL+ ++ Sbjct: 170 VSAVAPQAEAAGGTPQVGALLKAALQTLN 198 >gi|262278158|ref|ZP_06055943.1| Holliday junction helicase subunit A [Acinetobacter calcoaceticus RUH2202] gi|262258509|gb|EEY77242.1| Holliday junction helicase subunit A [Acinetobacter calcoaceticus RUH2202] Length = 199 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + L VL++V GV Y I P+ T L K G TL+ +R+D +L Sbjct: 1 MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ F L V GVG ++A+G+LS ++ LV +I + + ++PG+ K Sbjct: 60 YGFSDAQEKIIFRTLLKVNGVGPKMALGILSTLSVELLVHTIEHDDINTLIKVPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+M EL+ + +L+ Q S + S A +AL +LGY +A A Sbjct: 120 AERLMIELRDRFKTLA----QGTSSTTTLSQIQFAANSPVAEAEAALQSLGYKPLEAQKA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +V AD IIR AL+++ Sbjct: 176 VAAVKADYTESAD---IIRAALKSM 197 >gi|15613787|ref|NP_242090.1| Holliday junction DNA helicase RuvA [Bacillus halodurans C-125] gi|20140284|sp|Q9KDI9|RUVA_BACHD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|10173840|dbj|BAB04943.1| holliday junction DNA helicase [Bacillus halodurans C-125] Length = 203 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 92/205 (44%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + Y +++V GV Y +YCP + T++ ++R+D IRL Sbjct: 1 MIDYLRGTLTDIDHQYAVVEVHGVGYQVYCP-NPYEFEKERDSVITIYTFQYVREDVIRL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + R F L +V G+G + A+ +L+ ++++I ++ + + PG+ K Sbjct: 60 YGFRTKEKRSLFEKLLNVSGIGPKGALAILATGQPEHVIQAIEEEDEAFLVKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK L + + A+ AL LGY + + Sbjct: 120 ARQIILDLKGKVDELHPGLFS-QKEEQPKPHEKNDGNQALDEAMEALKALGYVEKELKKV 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + E+ I+ AL+ + Sbjct: 179 KPKL---EQETLTTDAYIKKALQLM 200 >gi|148543762|ref|YP_001271132.1| Holliday junction DNA helicase RuvA [Lactobacillus reuteri DSM 20016] gi|184153168|ref|YP_001841509.1| Holliday junction DNA helicase RuvA [Lactobacillus reuteri JCM 1112] gi|227363258|ref|ZP_03847390.1| crossover junction endoribonuclease subunit A [Lactobacillus reuteri MM2-3] gi|325682134|ref|ZP_08161652.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus reuteri MM4-1A] gi|167012661|sp|A5VIX1|RUVA_LACRD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560094|sp|B2G6E7|RUVA_LACRJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|148530796|gb|ABQ82795.1| Holliday junction DNA helicase subunit RuvA [Lactobacillus reuteri DSM 20016] gi|183224512|dbj|BAG25029.1| holliday junction DNA helicase RuvA [Lactobacillus reuteri JCM 1112] gi|227071714|gb|EEI10005.1| crossover junction endoribonuclease subunit A [Lactobacillus reuteri MM2-3] gi|324978778|gb|EGC15727.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus reuteri MM4-1A] Length = 199 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 50/206 (24%), Positives = 93/206 (45%), Gaps = 7/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G + + Y+++DV GV Y + ++V +R+D I L Sbjct: 1 MYEYLTGLVTVVAPQYIVVDVNGVGYKLLV-ANPYRYQEDRTKKVQVYVYQAVREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ FM L +V G+G + A+ +L+ LV++I N + + PGI K Sbjct: 60 FGFTDQNEKNLFMQLINVSGIGPKSALAILANPDHQGLVDAITNNNVSYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +L+ K + + ++ +A+ AL LGY + Sbjct: 120 ASQIVLDLRDKLTN----ESSSSLFATTQLTVDATVNRELKDALEALAALGYKERDIKKV 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 +++K+E+ D + +R ALR ++ Sbjct: 176 QKALMKEEQMATD--EYLRQALRLLN 199 >gi|311069260|ref|YP_003974183.1| Holliday junction DNA helicase RuvA [Bacillus atrophaeus 1942] gi|310869777|gb|ADP33252.1| Holliday junction DNA helicase RuvA [Bacillus atrophaeus 1942] Length = 201 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 102/205 (49%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG I+ + Y++I+ G+ Y I+ P + K + T+F H+R+D L Sbjct: 1 MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPNPFIY---KERNQETIFTYHHIREDAFSL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F L +V G+G + A+ +L+ ++E+I ++ + + PG+ K Sbjct: 58 YGFSTREEKALFTKLLNVTGIGPKGALAILASGDPGAVIEAIEQEDEAFLVKFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + + +++ ++++ + A+ AL LGY + + Sbjct: 118 ARQIILDLKGKLADVVPEMIENLFN-HEDRIEKHKAETALDEALEALRVLGYAEKEIKKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + KE Q ++ AL+ + Sbjct: 177 LPHL--KEDTTLTTDQYVKKALQKL 199 >gi|121610984|ref|YP_998791.1| Holliday junction DNA helicase RuvA [Verminephrobacter eiseniae EF01-2] gi|166231456|sp|A1WQ66|RUVA_VEREI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|121555624|gb|ABM59773.1| Holliday junction DNA helicase RuvA [Verminephrobacter eiseniae EF01-2] Length = 191 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 51/205 (24%), Positives = 99/205 (48%), Gaps = 16/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G + VL+D GV Y + P+ + L +G+ +L + +R+D L Sbjct: 1 MIGKLTGTLLEKNPPEVLLDCHGVGYEVNVPMSSFYNLPAVGERISLLTQFIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +RQ F L + GVG R+A+ +LS ++ +L ++I Q + + ++PG+ + Sbjct: 61 YGFATAPERQAFRALIKITGVGPRMALSILSGMSVADLAQAIARQEAARLVKVPGVGKRT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R + + + +H ++ + + AL+ LGY +A A Sbjct: 121 AER------------LLLELKGKLGADLGASHGPAVSGAQADILQALLALGYNDKEAAAA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ + + S I+ AL+A+ Sbjct: 169 LKALPAQ----VEVSDGIKWALKAL 189 >gi|296113247|ref|YP_003627185.1| holliday junction DNA helicase RuvA [Moraxella catarrhalis RH4] gi|295920941|gb|ADG61292.1| holliday junction DNA helicase RuvA [Moraxella catarrhalis RH4] Length = 204 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 65/207 (31%), Positives = 102/207 (49%), Gaps = 6/207 (2%) Query: 1 MIGKIKGNIEGLYEDYV-LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG I G ++ L ++ GV Y I PI + L IG ++V H+R+D I Sbjct: 1 MIGMISGRVQYLNAPIACILTSNGVGYEIELPIPSFCQL-TIGAQTAVYVHHHVREDAIN 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF+ DR F L + GVGA++A+ +LS ++ E+ +I + ++PGI K Sbjct: 60 LFGFMDRHDRDIFRKLIKINGVGAKMALAMLSTLSVAEIKHAIETDYDAALVRVPGIGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ +LKGK + M+ + SAL+NLGY + +A Sbjct: 120 TAQRILLDLKGKLNEFGEM--HPMTAEGLFNQPADNSMLIIAEVESALMNLGYKEKEAQV 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ + KN + S +++ ALR +S Sbjct: 178 AIKNAQSDAKN--NTSDLLKAALRQLS 202 >gi|327475178|gb|AEA77184.1| holliday junction DNA helicase [Bacillus aquimaris] Length = 203 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 92/205 (44%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG I + +YV+++ G+ Y +Y +F H+R+D I L Sbjct: 1 MYEYIKGTISQVSPEYVVVENNGIGYQLY-TANPFVYSKYHNQEIQIFTYQHVREDIIAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS ++ FM L +V G+G + A+ +L+ +++ +I +N + + PG+ K Sbjct: 60 YGFLSLEEKLLFMKLLNVSGIGPKGALAILASGAPQQVITAIEEENESFLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK + + N E + AI AL LGY + Sbjct: 120 ARQMILDLKGKLQDVVPDYFPSLFNHNDETEALSDKDEAFDEAILALKALGYSDREIKKI 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + +IIR AL+ + Sbjct: 180 TPKL---KGEGHSADEIIRKALQLL 201 >gi|255658187|ref|ZP_05403596.1| holliday junction DNA helicase RuvA [Mitsuokella multacida DSM 20544] gi|260849495|gb|EEX69502.1| holliday junction DNA helicase RuvA [Mitsuokella multacida DSM 20544] Length = 199 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 108/206 (52%), Gaps = 9/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + LY DY L+DV GV Y ++ T + L ++ + +LF T +R+D I L Sbjct: 1 MIGYLHGRVIALYTDYCLLDVHGVGYRVFLANSTRAKL-RLKEEASLFTYTSVREDAIVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ + + F+ L V G+G +VA+G+LS IT L +I + + V+ ++PGI K Sbjct: 60 YGFATEEEYELFLQLIGVSGIGPKVALGILSAITVESLCRAIQNKQASVLTKLPGIGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K S ++ ++ N A++AL +LGY Q + Sbjct: 120 AERLILELKDKVAFADSGEEELLTIEN----EAEVGDDAVAEAMAALQSLGYTQAEIAPV 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + K II+ +L+A+S Sbjct: 176 IRKTAK----YKTTEAIIKESLKALS 197 >gi|154686915|ref|YP_001422076.1| Holliday junction DNA helicase RuvA [Bacillus amyloliquefaciens FZB42] gi|308174476|ref|YP_003921181.1| Holliday junction DNA helicase [Bacillus amyloliquefaciens DSM 7] gi|166230516|sp|A7Z769|RUVA_BACA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|154352766|gb|ABS74845.1| RuvA [Bacillus amyloliquefaciens FZB42] gi|307607340|emb|CBI43711.1| Holliday junction DNA helicase [Bacillus amyloliquefaciens DSM 7] gi|328554396|gb|AEB24888.1| Holliday junction DNA helicase RuvA [Bacillus amyloliquefaciens TA208] gi|328912801|gb|AEB64397.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus amyloliquefaciens LL3] Length = 201 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 98/205 (47%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG I+ + Y++I+ G+ Y ++ P + K+ + T+F H+++D L Sbjct: 1 MIEFVKGTIDYVSPQYIVIENGGIGYQVFTPNPFIY---KVSNQETIFTYHHIKEDAFSL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F L +V G+G + A+ +L ++E+I ++ + + PG+ K Sbjct: 58 YGFSTREEKALFTKLLNVTGIGPKGALAILGSGDPGAVIEAIEQEDEAFLVKFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + + ++ + A+ AL LGY + + Sbjct: 118 ARQIILDLKGKLADVVPEMIDNLFNHEAR-IEKQEAETALDEALEALRVLGYAEKEIKKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + KE+ Q ++ AL+ + Sbjct: 177 LPHL--KEETALSTDQYVKKALQKL 199 >gi|319651695|ref|ZP_08005822.1| Holliday junction DNA helicase motor protein [Bacillus sp. 2_A_57_CT2] gi|317396762|gb|EFV77473.1| Holliday junction DNA helicase motor protein [Bacillus sp. 2_A_57_CT2] Length = 203 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 93/198 (46%), Gaps = 5/198 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G ++ + +YV+I+ G+ Y I P S + G ++ ++R+D + L Sbjct: 1 MYEFVRGKLDFIGPEYVVIENNGIGYQILTP-NPFSYTPEFGQEVRIYTYHYVREDIMAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F L +V G+G + A+ +L+ ++V++I ++ + + PG+ K Sbjct: 60 YGFQTREEKTLFTKLLNVTGIGPKGALAILASGEPEQVVQAIENEDEAFLVKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK + ++ +K QA A+ AL LGY + Sbjct: 120 ARQMILDLKGKLPDIVPDFFPNLFSADKLQAESGPSGD-LEEALLALKALGYSDKELKKI 178 Query: 181 VVSVLKKEKNIADDSQII 198 + K++ Q I Sbjct: 179 TPELRKEK---LTTDQYI 193 >gi|256788881|ref|ZP_05527312.1| Holliday junction DNA helicase RuvA [Streptomyces lividans TK24] gi|289772769|ref|ZP_06532147.1| Holliday junction DNA helicase RuvA [Streptomyces lividans TK24] gi|289702968|gb|EFD70397.1| Holliday junction DNA helicase RuvA [Streptomyces lividans TK24] Length = 201 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 56/209 (26%), Positives = 95/209 (45%), Gaps = 14/209 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L D +I+V GV + C TLS L ++G L +R+D + L Sbjct: 1 MIAFVSGTVATLAPDAAVIEVGGVGMAVQCTPNTLSTL-RLGKPAKLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ L ++ + K + +PGI K Sbjct: 60 YGFADDDERQVFELLQTASGVGPRLAQAMLAVHQPDALRRAVATGDEKALTAVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK + + + +AL+ LGY +A A Sbjct: 120 AQKLLLELKDRLGE----------PIGAPAVGAPVSTGWRDQLHAALIGLGYATREADEA 169 Query: 181 VVSVLKKEKNIADDSQ---IIRLALRAIS 206 V +V + + Q +++ AL+ ++ Sbjct: 170 VSAVAPQAEAAGGTPQVGALLKAALQTLN 198 >gi|297155806|gb|ADI05518.1| Holliday junction DNA helicase RuvA [Streptomyces bingchenggensis BCW-1] Length = 204 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 60/212 (28%), Positives = 99/212 (46%), Gaps = 17/212 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G I + D +++V GV + C TLS L ++G L +R+D + L Sbjct: 1 MIAFVSGPIAAVGPDIAVVEVGGVGMAVQCTPNTLSGL-RVGQPARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ + L ++ + K + +PGI K Sbjct: 60 YGFADDDERQIFELLQTASGVGPRLAQAMLAVHSPDALRLAVATGDEKSLTAVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + V + P ++ +ALV LGY +A A Sbjct: 120 AQRLLLELKDRLGE----------PVGRPAGPAAPAPGWSDQLHTALVGLGYAPREAEDA 169 Query: 181 VVSVLKK------EKNIADDSQIIRLALRAIS 206 V +V + +Q++R AL+ ++ Sbjct: 170 VAAVTPQAEAAVAAGGSPQVAQLLRAALQTLN 201 >gi|90418966|ref|ZP_01226877.1| Holliday junction specific DNA helicase, subunit RuvA [Aurantimonas manganoxydans SI85-9A1] gi|90337046|gb|EAS50751.1| Holliday junction specific DNA helicase, subunit RuvA [Aurantimonas manganoxydans SI85-9A1] Length = 206 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 87/206 (42%), Positives = 134/206 (65%), Gaps = 1/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ + ED+V++DV GV Y+ +C RTL+ L G+ LF++T++R+D +RL Sbjct: 1 MIGKLKGTVDEIGEDHVVVDVHGVGYVAFCGARTLAALPGEGEAVVLFIDTYVREDMLRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ WF LLQ VQGVGARVA+ V+ ++A +L ++ LQ+ ++A+ PG+ K+ Sbjct: 61 YGFATRAEQDWFRLLQMVQGVGARVALAVIGTLSAGDLANAVALQDKAMVARAPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ ELK KA + S D S K + + +A+SALVNLGY +DQA A Sbjct: 121 AARIVAELKDKAPAFSG-AGSDESLGLKRDIGGGTAAAPVADAVSALVNLGYPRDQAAEA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V LK D +++IRL L+A+S Sbjct: 180 VAKALKDAGEAPDSAKLIRLGLKALS 205 >gi|285019190|ref|YP_003376901.1| holliday junction resolvasome, DNA-binding subunit protein [Xanthomonas albilineans GPE PC73] gi|283474408|emb|CBA16909.1| putative holliday junction resolvasome, dna-binding subunit protein [Xanthomonas albilineans] Length = 194 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 94/204 (46%), Gaps = 13/204 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +++IDV GV Y + P+ T L +G LF ++D + L Sbjct: 1 MIGRLRGILAYKQPPWLVIDVGGVGYEMEAPMSTFYDLPDVGREVILFTHYAHKEDSVAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + +R+ F +Q V G+GA++A+ VLS ++ I + + +IPGI K Sbjct: 61 YGFLREGERRLFRDVQRVTGIGAKIALAVLSGVSVDAFARLITAADVTALTRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ +A S A SAL LGY A Sbjct: 121 AERMVVELRDRAADFSGGAP----------ITGQLGADAVSEATSALQQLGYKP---AEA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + + + + +IR AL++ Sbjct: 168 AKMAREAAADGDEVAMVIRKALQS 191 >gi|326560238|gb|EGE10626.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis 7169] gi|326566444|gb|EGE16594.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis BC1] Length = 204 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 65/207 (31%), Positives = 102/207 (49%), Gaps = 6/207 (2%) Query: 1 MIGKIKGNIEGLYEDYV-LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG I G ++ L ++ GV Y I PI + L IG ++V H+R+D I Sbjct: 1 MIGMISGQVQYLNAPIACILTSNGVGYEIELPIPSFCQL-TIGTQTAVYVHHHVREDAIN 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF+ DR F L + GVGA++A+ +LS ++ E+ +I + ++PGI K Sbjct: 60 LFGFMDRHDRDIFRKLIKINGVGAKMALAMLSTLSVAEIKHAIETDYDAALVRVPGIGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ +LKGK + M+ + SAL+NLGY + +A Sbjct: 120 TAQRILLDLKGKLNEFGEM--HPMTAEGLFNQPADNSMLIVAEVESALMNLGYKEKEAQV 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ + KN + S +++ ALR +S Sbjct: 178 AIKNAQSDAKN--NTSDLLKAALRQLS 202 >gi|189218506|ref|YP_001939147.1| Holliday junction resolvasome, DNA-binding subunit [Methylacidiphilum infernorum V4] gi|189185364|gb|ACD82549.1| Holliday junction resolvasome, DNA-binding subunit [Methylacidiphilum infernorum V4] Length = 211 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 51/207 (24%), Positives = 99/207 (47%), Gaps = 11/207 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + +++++V+G+ + ++C + L + TL+ + ++++ L Sbjct: 12 MISYLKGTLIYSLFPHIIVEVRGIGFEVFCSLSLFRNLPPLYSELTLYTHLEVSENRLEL 71 Query: 61 FGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 FGF ++ F LL V GVG R A+ +L+ + +EL ++ + +++++I GI K Sbjct: 72 FGFKDLEEQLTFRLLVEKVHGVGPRTALSILNVLPPSELKAAVGRADFRLLSKIKGIGEK 131 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELK + + + V +A+ ALV LGY + +A Sbjct: 132 TAHRLVVELKDSWATAEASSSSGTAIVGDR---------VFEDALRALVALGYKEPEALK 182 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 + V +K D II+ L+ S Sbjct: 183 RLRRVREKHPQ-MDLEGIIKECLKLAS 208 >gi|153955759|ref|YP_001396524.1| Holliday junction DNA helicase RuvA [Clostridium kluyveri DSM 555] gi|219856126|ref|YP_002473248.1| hypothetical protein CKR_2783 [Clostridium kluyveri NBRC 12016] gi|146348617|gb|EDK35153.1| RuvA [Clostridium kluyveri DSM 555] gi|219569850|dbj|BAH07834.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 196 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 105/205 (51%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +G+ +DY++++ G+ Y I T++ KI + TL+++ +R+D I L Sbjct: 1 MYEYIKGIYKGVNKDYIVVENNGIGYKINTSGSTIAKTPKIDENITLYLQQIVREDFIGL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + F LL ++ G+GA+ A+ +LS + L +II + K + + PG+ K Sbjct: 61 YGFLTKEEINMFNLLLTINGIGAKAALSLLSISSVNNLKYAIISGDEKNLIRAPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + Q+ + S + + AL+ LGY + +A A Sbjct: 121 AQRIILELKDKIKPEEIINQE-------KDHRQVSQEEETMEVLEALIALGYSEKEAGRA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V S+ + +I+ AL+ + Sbjct: 174 VASIDNND----SIESMIKNALKFL 194 >gi|182415003|ref|YP_001820069.1| Holliday junction DNA helicase RuvA [Opitutus terrae PB90-1] gi|229560110|sp|B1ZN17|RUVA_OPITP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|177842217|gb|ACB76469.1| Holliday junction DNA helicase RuvA [Opitutus terrae PB90-1] Length = 200 Score = 148 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 56/203 (27%), Positives = 89/203 (43%), Gaps = 5/203 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + +++V G Y ++ P+ T L G L R+D L Sbjct: 1 MITSIQGTLVSATPLQAIVEVAGFGYEVHIPVTTAERLPAAGAAVKLHTLVIYREDSQTL 60 Query: 61 FGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GF S +R +F L+ V GVG ++A+ ++SR+ L +I + + +A+ PGI K Sbjct: 61 YGFASPAERDFFRLMIEHVTGVGPKMALSIMSRLALPSLESAIRMGDVASLAKCPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ EL+ K + A S +A++ALV LGY A Sbjct: 121 TAERLVVELRTKV----GATGAAPGLATQPAAAASPGASAHRDAVAALVALGYRSADADE 176 Query: 180 AVVSVLKKEKNIADDSQIIRLAL 202 AV A +I+ AL Sbjct: 177 AVRRASLALGEAATTESLIKKAL 199 >gi|134098596|ref|YP_001104257.1| Holliday junction DNA helicase RuvA [Saccharopolyspora erythraea NRRL 2338] gi|291008207|ref|ZP_06566180.1| Holliday junction DNA helicase RuvA [Saccharopolyspora erythraea NRRL 2338] gi|166200258|sp|A4FBA7|RUVA_SACEN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|133911219|emb|CAM01332.1| Holliday junction DNA helicase [Saccharopolyspora erythraea NRRL 2338] Length = 200 Score = 148 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 100/205 (48%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +I+V GV ++ TL+ L + G+ L+ +R+D + L Sbjct: 1 MIASVRGPVLSVGLDHAVIEVGGVGMAVHATPATLAGL-RRGEEARLWTSLIVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F LLQ+ GVG R+A+ L+ + +L ++ N + Q+PG+ K Sbjct: 60 YGFADAEARDLFGLLQTASGVGPRLALATLAVLAPDQLCHALSDGNITTLTQVPGVGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K +++ A ALV LG+ QA + Sbjct: 120 AERLILELRDKVGTVAGTAGA--------GAQAPDRGRVRSEVSEALVGLGFSAKQAEQS 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +VL + ++D S ++R AL A+ Sbjct: 172 VEAVLAADGPVSDTSAVLRKALAAL 196 >gi|327475176|gb|AEA77183.1| holliday junction DNA helicase [Exiguobacterium sp. EPVM] Length = 195 Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 94/205 (45%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG++ + +Y+ +DV GV Y ++ P + + +F ++R+DQ L Sbjct: 1 MIEFVKGSVAYVCAEYITLDVSGVGYKVHVPNPFFYR--EQDEHVIVFTHHYVREDQQTL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R+ F L V G+G + A+ +++ L+++I +N K + + PG+ K Sbjct: 59 YGFRSRRERELFNKLLGVNGIGPKGALAIVASGDMDALIDAIETENEKYLTKFPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A ++ +LKGK L+ + S A ALV LGY + + T Sbjct: 119 AKQMALDLKGKLSELAPDYVPNTGLF-------AQGASELDEACEALVALGYSEREITRV 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + I I+ AL+ + Sbjct: 172 RKEL---NSEILTTDAYIKRALQLL 193 >gi|331697370|ref|YP_004333609.1| Holliday junction ATP-dependent DNA helicase ruvA [Pseudonocardia dioxanivorans CB1190] gi|326952059|gb|AEA25756.1| Holliday junction ATP-dependent DNA helicase ruvA [Pseudonocardia dioxanivorans CB1190] Length = 199 Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 106/205 (51%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +++V GV + ++ TL L + G L +R+D + L Sbjct: 1 MISSVRGEVLSVGLDHAVVEVGGVGFAVFATPATLGGL-RRGQEARLETLLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F+LLQ+V GVG R+A+ L+ + L ++ ++ + +IPG+ K Sbjct: 60 YGFADAEERELFVLLQTVSGVGPRLALATLAVLDPQSLRRALADGDTATLTRIPGVGRKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K ++ + V+ D+ + + + + ALV LG+ A A Sbjct: 120 AERLVVELRDKVVAPAPVLAGDV-------RPLVTGNAHRDQVVEALVGLGFTARPAEAA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +L + + A+ + ++R AL + Sbjct: 173 VDGILAGDPD-AEPAALLRSALATL 196 >gi|227544210|ref|ZP_03974259.1| crossover junction endoribonuclease subunit A [Lactobacillus reuteri CF48-3A] gi|300908206|ref|ZP_07125672.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus reuteri SD2112] gi|133930481|gb|ABO43812.1| RuvA [Lactobacillus reuteri] gi|227185803|gb|EEI65874.1| crossover junction endoribonuclease subunit A [Lactobacillus reuteri CF48-3A] gi|300894633|gb|EFK87989.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus reuteri SD2112] Length = 199 Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 50/206 (24%), Positives = 94/206 (45%), Gaps = 7/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G + + Y+++DV GV Y + ++V +R+D I L Sbjct: 1 MYEYLTGLVTVVAPQYIVVDVNGVGYKLLV-ANPYRYQEDRTKKVQVYVYQAVREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +++ FM L +V G+G + A+ +L+ LV++I N + + PGI K Sbjct: 60 FGFTDQNEKKLFMQLINVSGIGPKSALAILANPDHQGLVDAITNNNVNYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +L+ K + + ++ +A+ AL LGY + Sbjct: 120 ASQIVLDLRDKLTN----ESSSSLFATTQLTVDATVNRELKDALEALAALGYKERDIKKV 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 +++K+E+ D + +R ALR ++ Sbjct: 176 QKTLMKEEQMATD--EYLRQALRLLN 199 >gi|28211817|ref|NP_782761.1| Holliday junction DNA helicase RuvA [Clostridium tetani E88] gi|44888475|sp|Q891Z7|RUVA_CLOTE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|28204259|gb|AAO36698.1| holliday junction DNA helicase ruvA [Clostridium tetani E88] Length = 197 Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 107/205 (52%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +G+++DY+ ++ G+ Y I+ TL + + L+++ R D I L Sbjct: 1 MYDYIKGIYKGMHKDYITVENNGIGYKIFTSGNTLYETPEKDEEIKLYIQQIPRDDSINL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ +R F LL ++ GVGA+ ++ +LS + +L SI+ +++ ++ + PGI K Sbjct: 61 YGFFTEEERDMFNLLMTISGVGAKSSLSLLSVTSINKLKYSIVTEDTTLLTRAPGIGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + + + I + + A+ AL++LGY Q ++ A Sbjct: 121 AERIILELKDKFKNDDIISDI------DDLDSISNFQLHSAEALEALMSLGYSQKESEKA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +V K+ II+ L+ + Sbjct: 175 LKNVDKEN----SLEDIIKACLKYL 195 >gi|87124238|ref|ZP_01080087.1| putative holliday junction DNA helicase RuvA [Synechococcus sp. RS9917] gi|86167810|gb|EAQ69068.1| putative holliday junction DNA helicase RuvA [Synechococcus sp. RS9917] Length = 216 Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 53/213 (24%), Positives = 95/213 (44%), Gaps = 8/213 (3%) Query: 1 MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MIG ++G+ +E LI GV Y + R ++ + TL++ ++D Sbjct: 1 MIGWLQGDRIDTWEQGSRRGWLIACAGVGYEVQLSERHMAD-PEQQRQVTLWIHQVQKED 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 LFGF +R F L SV GVG +V + +L+ A ELV++I+ + + ++Q G+ Sbjct: 60 GSSLFGFPERRERDLFRQLISVNGVGPQVGLALLACWRADELVDAILDGDVRRLSQAQGV 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS-MPSFAINAISALVNLGYGQD 175 + A R+ EL+ + + + +S V+++ H + L +LGY Sbjct: 120 GKRTAERLAVELRDRLAAGRHQMDAPLSLVDRQDLHALPIAADPLQDLQLTLTSLGYEDL 179 Query: 176 QATTAVVSVL--KKEKNIADDSQIIRLALRAIS 206 + A+ +V D +R LR +S Sbjct: 180 EIRRALKAVATGATSPAATDGEAWLRECLRWLS 212 >gi|325853052|ref|ZP_08171201.1| Holliday junction DNA helicase RuvA [Prevotella denticola CRIS 18C-A] gi|325484426|gb|EGC87347.1| Holliday junction DNA helicase RuvA [Prevotella denticola CRIS 18C-A] Length = 222 Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 59/209 (28%), Positives = 98/209 (46%), Gaps = 9/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMR----QD 56 MI I+G + L +++ GV Y + + T S L + L+V + D Sbjct: 18 MIEYIRGELADLTPALAVVEAHGVGYALNISLNTYSAL-QGKTTVKLYVHEAIMTGGRDD 76 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF S +R + LL +V GVGA A +LS +T EL I + K++ + GI Sbjct: 77 SYTLYGFASRQERSLYRLLITVSGVGANTARMILSSLTPAELCNVIANADEKMLKTVKGI 136 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 ++ A RI+ +LK K + D V+ + + A+SAL LG+ Sbjct: 137 GLRTAQRIIVDLKDKIMQ---SGIADELHVSSQPGTPAVDTAIKDEAVSALTMLGFSPAP 193 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + VVS+L + ++ Q+++LAL+ I Sbjct: 194 SAKVVVSILTDQPDLP-VEQVVKLALKMI 221 >gi|15604250|ref|NP_220766.1| Holliday junction DNA helicase RuvA [Rickettsia prowazekii str. Madrid E] gi|6226115|sp|Q9ZDE6|RUVA_RICPR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|3860942|emb|CAA14842.1| HOLLIDAY JUNCTION DNA HELICASE RUVA (ruvA) [Rickettsia prowazekii] gi|292571994|gb|ADE29909.1| Holliday junction DNA helicase RuvA [Rickettsia prowazekii Rp22] Length = 199 Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 69/203 (33%), Positives = 113/203 (55%), Gaps = 10/203 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G I+ +DYV+IDV GV Y++Y +TL+ L + G F LF+ETH+R++ I L Sbjct: 1 MIGKLNGKIDSHCDDYVIIDVNGVGYLVYASGKTLAKLVE-GKFYKLFIETHVREEHIHL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ +F LLQSV G+G ++A+ +LS +T T++ +I + + I G+ K+ Sbjct: 60 YGFLTLEEKNFFNLLQSVNGIGTKMALSILSNLTPTDIQIAINNDDRNIFKAISGVGAKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RIM ELK K + + + ALVNLG+ + +A Sbjct: 120 AERIMLELKDKITKI--------FSSSAIIKDSNISSIAINEVMKALVNLGFTRFEAQNT 171 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V ++ + I ++I+ AL+ Sbjct: 172 VQGIITQNPKI-SIDELIKTALK 193 >gi|187935379|ref|YP_001885221.1| Holliday junction DNA helicase RuvA [Clostridium botulinum B str. Eklund 17B] gi|229560022|sp|B2TMZ1|RUVA_CLOBB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|187723532|gb|ACD24753.1| Holliday junction DNA helicase RuvA [Clostridium botulinum B str. Eklund 17B] Length = 198 Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 105/205 (51%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG G+ +DY++I+ G+ Y I+ T+S + G+ L++E +R+D I L Sbjct: 1 MYEYIKGEYMGINKDYIIIENNGIGYKIFTSGATMSSMPCCGEKIKLYIEQIVREDFIGL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S + + F +L S+ GVGA+ A+ +LS L +II + K + + GI K Sbjct: 61 YGFESLEELEMFKMLLSINGVGAKAALSLLSISRLNNLKYAIITGDEKHLCRGVGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ ELK K + ++C+++ A+SAL++LGY + +A Sbjct: 121 AARIILELKDKLK-----TDELLNCIDEFDDVTQDNSLAVSEALSALISLGYTEKEAEKV 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + V K E II+ AL + Sbjct: 176 LRDVDKSE----SVENIIKSALVKL 196 >gi|254460781|ref|ZP_05074197.1| Holliday junction DNA helicase RuvA [Rhodobacterales bacterium HTCC2083] gi|206677370|gb|EDZ41857.1| Holliday junction DNA helicase RuvA [Rhodobacteraceae bacterium HTCC2083] Length = 222 Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 69/220 (31%), Positives = 116/220 (52%), Gaps = 15/220 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G I+ D+V++DV+GV Y++YC RTL+ L + G+ +L+ + +R+D ++L Sbjct: 1 MIGKLSGRIDYRAADHVMMDVRGVGYMVYCSDRTLAGLPRAGEVVSLYTDLLVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++W LL SVQG+GA+ ++ +L + A + +I L + I G+ K Sbjct: 61 FGFTTLVEKEWHRLLMSVQGIGAKASLAILGALGADGVSRAIALADVTAIKAAKGVGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHIC--------------SMPSFAINAISA 166 A R++ ELK KA + ++ + E S A+SA Sbjct: 121 AQRVVIELKDKAPGVMAMGGGTPATAMGEVPAADDFDVIETSAVKVSVPSASAQAEALSA 180 Query: 167 LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 L NLGY +A +AV + A S +IR AL+ ++ Sbjct: 181 LSNLGYAPSEAASAVAEAAGADPE-ATTSALIRAALKLLA 219 >gi|262373115|ref|ZP_06066394.1| Holliday junction DNA helicase RuvA [Acinetobacter junii SH205] gi|262313140|gb|EEY94225.1| Holliday junction DNA helicase RuvA [Acinetobacter junii SH205] Length = 201 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 102/205 (49%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + L VL++V GV Y I P+ T L K G TL+ +R+D +L Sbjct: 1 MIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ F L V GVG ++A+G+LS ++ L+ +I + + ++PG+ K Sbjct: 60 YGFSEAQEKIIFRTLLKVNGVGPKMALGILSTLSVELLIHTIEHDDINTLIKVPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+M EL+ + +LS + + S A +AL +LGY +A A Sbjct: 120 AERLMIELRDRFKALSQSANSTSQTTTSQIQFMS--NSPVAEAEAALQSLGYKPIEAQKA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +V AD IIR AL+++ Sbjct: 178 VAAVKADYTESAD---IIRAALKSM 199 >gi|229829132|ref|ZP_04455201.1| hypothetical protein GCWU000342_01217 [Shuttleworthia satelles DSM 14600] gi|229792295|gb|EEP28409.1| hypothetical protein GCWU000342_01217 [Shuttleworthia satelles DSM 14600] Length = 199 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 9/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I+G +E + + +++D G+ Y I P +LS + + ++ +R D L Sbjct: 1 MFSYIQGRVEEINPEGIVLDHDGIGYEIGLPQSSLSQIRRQMQ-LRVYTYLQVRDDGFSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL D F LL V G+G + A+ +L ++ +L +I + K IAQ PGI K Sbjct: 60 FGFLKREDLDLFKLLIGVGGIGPKGALSILGVLSVDQLRFAIAAGDDKTIAQAPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +L+ K Q + +A S AI AL LGY +A A Sbjct: 120 AQRVILDLRDKID-----FTQTLEAQLDSKASDRSSDDIRGEAILALNALGYSSAEALQA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + + +IR L+ ++ Sbjct: 175 IRDL---DISSMSVEDLIRAGLKELA 197 >gi|255325096|ref|ZP_05366202.1| holliday junction DNA helicase RuvA [Corynebacterium tuberculostearicum SK141] gi|255297661|gb|EET76972.1| holliday junction DNA helicase RuvA [Corynebacterium tuberculostearicum SK141] Length = 205 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 105/205 (51%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +ID GV Y +TL L + G+ T+ +++D + L Sbjct: 1 MIAALRGEVIHIGLDHGVIDCAGVGYKFLATPKTLGTL-RRGEQATVLTNLVVKEDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +D DR+ F +LQSV G+G ++A+ LS + A EL +I ++ K + IPG+ ++ Sbjct: 60 YGFSADEDREMFHVLQSVSGLGPKLALAALSVMGAGELAAAIGAEDVKALQSIPGVGKRM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ELK K + + + + E A + + + ALV LG+ A Sbjct: 120 AQRLALELKDKVAGFAP--SEPAAAGSVETAIAPAGGAVVESVTEALVGLGFTDKGARPV 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V S + ++ D S ++R AL + Sbjct: 178 VESAYAENPDV-DTSSLLRAALAQL 201 >gi|317472815|ref|ZP_07932126.1| Holliday junction DNA helicase RuvA [Anaerostipes sp. 3_2_56FAA] gi|316899734|gb|EFV21737.1| Holliday junction DNA helicase RuvA [Anaerostipes sp. 3_2_56FAA] Length = 198 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 95/205 (46%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + + +++ G+ Y I P G IG ++ H+R+D I L Sbjct: 1 MISYIKGILVSMTPGGAVVENNGIGYDIMMPAG-QEFPGGIGQEVRIYTHMHVREDDISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + + F LL V G+G +V + VLS ++ EL +++ +SK I++ PG+ K Sbjct: 60 FGFRTKEELEAFELLIGVSGIGPKVGLSVLSTLSVYELKIAVMSDDSKTISKTPGLGPKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ EL+ K + M A + LV+LGY + +A A Sbjct: 120 AKKLILELRDKLDFEEFEQAEPMDFAGDLPAEDSVAVTA-----QGLVSLGYSRSEAMMA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + V + Q+++ AL + Sbjct: 175 IKKV--ENAAEYSPEQLLKKALTKL 197 >gi|257870592|ref|ZP_05650245.1| holliday junction DNA helicase RuvA [Enterococcus gallinarum EG2] gi|257804756|gb|EEV33578.1| holliday junction DNA helicase RuvA [Enterococcus gallinarum EG2] Length = 196 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 42/205 (20%), Positives = 90/205 (43%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + ++ Y++++ G+ Y + + GK+ +++ +R+D L Sbjct: 1 MYEYIIGKVTDIFPAYIVVETHGIGYQVAF-GNPYAFSGKLNQEVKIYLHQVIREDAHSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +Q F+ L SV G+G + A+ +++ L+ ++ + + + PG+ K Sbjct: 60 YGFSTLEGKQLFLKLISVSGIGPKSALAIMANEDHAGLITAVENGDVTYLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK L A + + A++AL LGY + + A Sbjct: 120 AQQMILDLKGKVAELVGEEPT---------APVTVANTALDEAMAALKALGYSEKEIKKA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + +R AL+ + Sbjct: 171 EKYLAPN--TTKSTDEYLREALKLM 193 >gi|159899035|ref|YP_001545282.1| Holliday junction DNA helicase RuvA [Herpetosiphon aurantiacus ATCC 23779] gi|229560066|sp|A9AZL0|RUVA_HERA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|159892074|gb|ABX05154.1| Holliday junction DNA helicase RuvA [Herpetosiphon aurantiacus ATCC 23779] Length = 197 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 109/204 (53%), Gaps = 11/204 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G ++ + +D V+IDV GV I P L+ +G IGD L+ H+R+D + L Sbjct: 1 MIASVRGVVQLIGQDQVVIDVHGVGLAIAVPRTVLATIGAIGDTAQLYTHLHVREDMLAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S R F LL V G+G +VA+ +LS T EL +I ++ +++++PGI K Sbjct: 61 FGFSSPAQRALFELLLGVSGIGPKVALALLSAATPEELQHAIAREDITMLSKVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+R++ ELKGK ++ ++ + + + + I L +LGY +A A Sbjct: 121 AARLVLELKGKFG---------VATISPQLSTNPGLLALNTELIDILTSLGYSTTEAQAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + ++ AD + +RLAL+ Sbjct: 172 LNALPADAP--ADTEERLRLALQY 193 >gi|149203738|ref|ZP_01880707.1| Holliday junction DNA helicase motor protein [Roseovarius sp. TM1035] gi|149142855|gb|EDM30897.1| Holliday junction DNA helicase motor protein [Roseovarius sp. TM1035] Length = 220 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 70/218 (32%), Positives = 114/218 (52%), Gaps = 13/218 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G I+ D+VLIDV+GV Y++YC RTLS L +G L+ + +R+D ++L Sbjct: 1 MIGRVAGRIDYRGTDHVLIDVRGVGYLVYCSERTLSALPAVGGMAALYTDLLVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++W LL SVQGVGA+ ++ +L + + +I + + + GI K Sbjct: 61 FGFPTLVEKEWHRLLMSVQGVGAKASLAILGALGPDGVGRAIAIGDWNSVTAAKGIGAKT 120 Query: 121 ASRIMTELKGKAI------------SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALV 168 A R++ ELK KA + + + + + P A+SAL Sbjct: 121 AQRVVNELKDKAPLVMAMGAAPAPMPAAPDTDEVIETASVPTPPVPPSPGAQAEALSALT 180 Query: 169 NLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 NLGY +A AV V + A +++IR ALR ++ Sbjct: 181 NLGYTPGEAAGAVAQVAGETPE-ATTAELIRAALRRLA 217 >gi|145220343|ref|YP_001131052.1| Holliday junction DNA helicase RuvA [Prosthecochloris vibrioformis DSM 265] gi|189045761|sp|A4SGE1|RUVA_PROVI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|145206507|gb|ABP37550.1| Holliday junction DNA helicase subunit RuvA [Chlorobium phaeovibrioides DSM 265] Length = 200 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 100/205 (48%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G + + +++V G+ Y T L ++G L+ +R+D ++L Sbjct: 1 MYAYFRGRLVSCLPEEAVLEVSGIAYRFLVSAGTARQLPEVGTETILYTHLSVREDALQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F LL GVG ++A+ VLS + E+ E+I+ + + I G+ K Sbjct: 61 YGFATEEEKQLFRLLLLTSGVGPKLALAVLSGMAVPEVHEAILANAPERLFGITGVGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ EL+ K + L+ V S F +A++AL+ LG+ + A A Sbjct: 121 AARIILELRDKILKLAPVGSAVASV-------AADRGGFREDAVNALMTLGFPRPVANQA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V L+ E + A +I+ AL + Sbjct: 174 VGCALEPEPD-ASLEVVIKRALATM 197 >gi|15605230|ref|NP_220016.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis D/UW-3/CX] gi|6685940|sp|O84509|RUVA_CHLTR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|3328938|gb|AAC68102.1| Holliday Junction Helicase [Chlamydia trachomatis D/UW-3/CX] gi|296436962|gb|ADH19132.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis G/11222] gi|297748631|gb|ADI51177.1| RuvA [Chlamydia trachomatis D-EC] gi|297749511|gb|ADI52189.1| RuvA [Chlamydia trachomatis D-LC] Length = 200 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 99/205 (48%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIR 59 M IKG + + E YV+I+ G+ Y I R L L + ++V + +R+ + Sbjct: 1 MYEYIKGTLTHINESYVVIESFGIGYAIMLSERFLVDLRAFMHQEVLIYVHSVIRETEHV 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF S +R+ F LL S G+G + + +L+ EL L+N K IA +PGI K Sbjct: 61 LYGFSSRAERECFRLLISFSGIGPKTGLSILNMFPLQELCSIARLENVKAIASVPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A ++M +LK K +L + ++ + S I AL+NLG+ + A Sbjct: 121 TAEKLMVDLKQKLPTLMPLYLEEP------VVPSSTANSSFKEGIGALMNLGFSRLAADR 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + +K+ A ++++ +ALR Sbjct: 175 MMTEAVKELSEEASVAELLPIALRK 199 >gi|118617340|ref|YP_905672.1| Holliday junction DNA helicase RuvA [Mycobacterium ulcerans Agy99] gi|183982124|ref|YP_001850415.1| Holliday junction DNA helicase RuvA [Mycobacterium marinum M] gi|166230572|sp|A0PPD2|RUVA_MYCUA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560107|sp|B2HN62|RUVA_MYCMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|118569450|gb|ABL04201.1| Holliday junction DNA helicase RuvA [Mycobacterium ulcerans Agy99] gi|183175450|gb|ACC40560.1| Holliday junction DNA helicase RuvA [Mycobacterium marinum M] Length = 197 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 94/205 (45%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+V+I+ GV Y + TL+ L + G L +R+D + L Sbjct: 1 MISSLRGEVLEVALDHVVIEAAGVGYRVNATPSTLATL-RQGTDARLITAMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ R F+ L SV GVG R+AM LS A L +++ + + ++PGI + Sbjct: 60 YGFVDGETRDLFLTLLSVSGVGPRLAMATLSVHDANGLRQALADGDVTALTRVPGIGKRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K S A + + + ALV LG+ QA A Sbjct: 120 AERMVVELRDKVGPAGSAAT----------APAVNGHTVRAPVVEALVGLGFAAKQAEEA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 VL + A S +R AL + Sbjct: 170 TDKVLAGDGE-ATTSSALRAALSLL 193 >gi|269219375|ref|ZP_06163229.1| holliday junction DNA helicase RuvA [Actinomyces sp. oral taxon 848 str. F0332] gi|269211168|gb|EEZ77508.1| holliday junction DNA helicase RuvA [Actinomyces sp. oral taxon 848 str. F0332] Length = 196 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 99/205 (48%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G++ + +I+ GV Y + TL+ L ++G + +R+D + L Sbjct: 1 MIAALRGSVLSVEPTAAVIEAGGVGYAVQATPATLAGL-RVGQEAFVHTSLVVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R+ F +LQ+V GVG ++A+ +L+ +T L +++ + + ++ G+ K Sbjct: 60 FGFADADEREVFDVLQTVSGVGPKLALTILATLTPDRLRQAVANADIAALTRVSGVGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+ K S + + + ++ALV LG+ + A +A Sbjct: 120 AQRLVLEIGAKLGPRRGG-----------DLEAPSSNARSGDVVAALVGLGFSERDAESA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V K A+ +++R +L+ + Sbjct: 169 FSQVEKATPE-AEVPELLRASLKIL 192 >gi|147919262|ref|YP_687002.1| holliday junction resolvasome, DNA-binding subunit [uncultured methanogenic archaeon RC-I] gi|110622398|emb|CAJ37676.1| holliday junction resolvasome, DNA-binding subunit [uncultured methanogenic archaeon RC-I] Length = 201 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 59/209 (28%), Positives = 105/209 (50%), Gaps = 12/209 (5%) Query: 1 MIGKIKGNIEGLYEDY--VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ-DQ 57 MI I+G I+ E V+I+ G+ Y ++ P L L + G+ C L++ T+ R+ D Sbjct: 1 MIAHIEGKIDAKSESEEVVVIEAGGIGYEVHVPTPVLDQLPQEGEDCKLYIHTNFREEDG 60 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 L+GF + DR +F LL +V G+G +V +G++S T E+ E+I+ ++ K + ++ G+ Sbjct: 61 TTLYGFATIQDRDFFRLLLTVSGIGPKVGLGIMSGATVEEIAEAIVTEDLKTLTRMNGVG 120 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 K A R++ ELK K L + + + +A+ ALV LGY + A Sbjct: 121 KKTAQRLVLELKDKVAKLR---------IMHHAKKQVKGDTASADAVDALVALGYSRQVA 171 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 + AV ++++ +LR + Sbjct: 172 SDAVARARDNFTAPPLVNELVVASLRYAA 200 >gi|54025666|ref|YP_119908.1| Holliday junction DNA helicase RuvA [Nocardia farcinica IFM 10152] gi|81374258|sp|Q5YTE7|RUVA_NOCFA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|54017174|dbj|BAD58544.1| putative Holliday junction DNA helicase B subunit [Nocardia farcinica IFM 10152] Length = 201 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 98/205 (47%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+V+++ GV Y + TL+ L + G L+ +R+D + L Sbjct: 1 MIASVRGEVLEIALDHVVVEAAGVGYRLNATPSTLATLTR-GAEARLYTAMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F LLQ+V GVG R+AM VL+ + L +++ N + ++PGI + Sbjct: 60 YGFADTEARDLFGLLQTVSGVGPRLAMAVLAVLEPEALRKALAESNVAALTRVPGIGKRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K + S + + AL LG+ QA A Sbjct: 120 AERMVVELRDKVNLVPVQAGPPGST------PAVAATPVREQVVEALTGLGFPLKQAEQA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +VL ++ AD S +R AL + Sbjct: 174 LDTVLAEQP-AADTSTALRAALSLL 197 >gi|326562883|gb|EGE13170.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis 46P47B1] gi|326563676|gb|EGE13928.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis 103P14B1] gi|326565244|gb|EGE15429.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis 12P80B1] gi|326570251|gb|EGE20296.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis BC8] gi|326570988|gb|EGE21012.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis BC7] gi|326573284|gb|EGE23252.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis 101P30B1] gi|326576898|gb|EGE26804.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis O35E] Length = 204 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 65/207 (31%), Positives = 102/207 (49%), Gaps = 6/207 (2%) Query: 1 MIGKIKGNIEGLYEDYV-LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG I G ++ L ++ GV Y I PI + L IG ++V H+R+D I Sbjct: 1 MIGMISGQVQYLNAPIACILTSNGVGYEIELPIPSFCQL-TIGAQTAVYVHHHVREDAIN 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF+ DR F L + GVGA++A+ +LS ++ E+ +I + ++PGI K Sbjct: 60 LFGFMDRHDRDIFRKLIKINGVGAKMALAMLSTLSVAEIKHAIETDYDAALVRVPGIGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ +LKGK + M+ + SAL+NLGY + +A Sbjct: 120 TAQRILLDLKGKLNEFGEM--HPMTAEGLFNQPADNSMLIIAEVESALMNLGYKEKEAQV 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ + KN + S +++ ALR +S Sbjct: 178 AIKNAQSDAKN--NTSDLLKAALRQLS 202 >gi|255348878|ref|ZP_05380885.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis 70] gi|255503418|ref|ZP_05381808.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis 70s] gi|255507096|ref|ZP_05382735.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis D(s)2923] gi|289525546|emb|CBJ15024.1| holliday junction DNA helicase [Chlamydia trachomatis Sweden2] gi|296435106|gb|ADH17284.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis E/150] gi|296438826|gb|ADH20979.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis E/11023] Length = 200 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 99/205 (48%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIR 59 M IKG + + E YV+I+ G+ Y I R L L + ++V + +R+ + Sbjct: 1 MYEYIKGTLTHIDESYVVIESFGIGYAIMLSERFLVDLRAFMHQEVLIYVHSVIRETEHV 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF S +R+ F LL S G+G + + +L+ EL L+N K IA +PGI K Sbjct: 61 LYGFSSRDERECFRLLISFSGIGPKTGLSILNMFPLQELCSIARLENVKAIASVPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A ++M +LK K +L + ++ + S I AL+NLG+ + A Sbjct: 121 TAEKLMVDLKQKLPTLMPLYLEEP------VVPSSTANSSFKEGIGALMNLGFSRLAADR 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + +K+ A ++++ +ALR Sbjct: 175 MMTEAVKELSEEASVAELLPIALRK 199 >gi|295695626|ref|YP_003588864.1| Holliday junction DNA helicase RuvA [Bacillus tusciae DSM 2912] gi|295411228|gb|ADG05720.1| Holliday junction DNA helicase RuvA [Bacillus tusciae DSM 2912] Length = 198 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 51/206 (24%), Positives = 101/206 (49%), Gaps = 10/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G I G+ D+V++DVQGV Y +Y + L G L + R+D L Sbjct: 1 MIAFLRGKIAGVNPDHVVMDVQGVGYKVYVAPSLAATL-HPGQEAVLHTQLVWREDGPTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R +F+L+Q+V G+G +VA+GV++ + +++ ++ + + G+ K Sbjct: 60 YGFADPRERDFFVLVQTVPGIGPKVALGVVAA-GIDRVSRAVVEEDMAFLRGLSGVGRKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +L+ + L S + ++AL LGY + + + Sbjct: 119 ADRLVVDLRDRLSGLVPDAAGPE--------REGSGVRPMEDVVAALSALGYNEREIQSI 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + ++ K + ++IRLAL ++ Sbjct: 171 MPVLRREWKEGREPEEMIRLALSQLA 196 >gi|168187973|ref|ZP_02622608.1| holliday junction DNA helicase RuvA [Clostridium botulinum C str. Eklund] gi|169294186|gb|EDS76319.1| holliday junction DNA helicase RuvA [Clostridium botulinum C str. Eklund] Length = 200 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 106/205 (51%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG GL +DY++++ + Y IY T++ + I + +++E +R+D I + Sbjct: 1 MFEYIKGTYMGLNKDYIIVESNNIGYKIYTSGNTMANMPNINEKVKIYIEQIVREDFIGV 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + +R F LL ++ GVGA+ A+ +LS + L SI+ ++ K++ + PGI KI Sbjct: 61 YGFLREDERAMFNLLLTISGVGAKAALSLLSISNVSNLKVSIMQEDYKMLTRAPGIGKKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI ELK K + ++D+ V A ALV LG+ Q +A A Sbjct: 121 AQRITLELKDKIEKIY---EEDVENVKDISETSIDAGRKYDEATEALVALGFTQKEAEKA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ QII+ +LR + Sbjct: 178 LKNIDIN----KTIEQIIKDSLRYL 198 >gi|212550754|ref|YP_002309071.1| Holliday junction DNA helicase RuvA [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|229470529|sp|B6YR38|RUVA_AZOPC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|212548992|dbj|BAG83660.1| Holliday junction DNA helicase RuvA [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 196 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 99/205 (48%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ IKG I L D V+I+ + Y+++ + T L KI C L++ +R++ +L Sbjct: 1 MLDFIKGEIVELIPDSVIIETGNIGYMLFISLNTYFSLTKIKS-CKLYIYEVIREETHQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+ +RQ F L SV GVGA +A VLS ++ EL E I N + + GI K Sbjct: 60 FGFIDKKERQLFTHLISVPGVGANIARMVLSSLSVCELEEIIFSGNVSALQALKGIGNKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + + + + AI+AL+ LG+ Q + Sbjct: 120 AERIIIDLKDKVK--------PDNIPSSDTIITNISSNITKEAITALITLGFSQSASQKV 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ + QII+ AL+ + Sbjct: 172 VNKIVSNNSSSTTIEQIIKKALKLL 196 >gi|257440216|ref|ZP_05615971.1| holliday junction DNA helicase RuvA [Faecalibacterium prausnitzii A2-165] gi|257197250|gb|EEU95534.1| holliday junction DNA helicase RuvA [Faecalibacterium prausnitzii A2-165] Length = 202 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 95/206 (46%), Gaps = 7/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G I + V++ GV Y + CP L +G TL+ + ++ I L Sbjct: 1 MIYSLSGKIIKKTLNAVVVSCGGVGYYVQCPTSVAGALPGVGREATLYTVMSVAENDISL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ + F LL +V GVG +V + +LS + + +I + K G+ K+ Sbjct: 61 YGFATEEQQSCFELLTAVSGVGPKVGLAILSVMEPDRVALAISAGDHKAFKAASGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K ++ + A A AI+ALV+LGY Q +A A Sbjct: 121 AQRIVLELKDKVAK---GFVDGINLEDVGAATAAPAAQGAGQAIAALVSLGYSQSEAALA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + +II+LALR ++ Sbjct: 178 VSKIDASLP----VEEIIKLALRGMA 199 >gi|227550815|ref|ZP_03980864.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX1330] gi|257887929|ref|ZP_05667582.1| holliday junction DNA helicase RuvA [Enterococcus faecium 1,141,733] gi|257893270|ref|ZP_05672923.1| holliday junction DNA helicase RuvA [Enterococcus faecium 1,231,408] gi|257896453|ref|ZP_05676106.1| holliday junction DNA helicase RuvA [Enterococcus faecium Com12] gi|293377530|ref|ZP_06623725.1| Holliday junction DNA helicase RuvA [Enterococcus faecium PC4.1] gi|227180052|gb|EEI61024.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX1330] gi|257823983|gb|EEV50915.1| holliday junction DNA helicase RuvA [Enterococcus faecium 1,141,733] gi|257829649|gb|EEV56256.1| holliday junction DNA helicase RuvA [Enterococcus faecium 1,231,408] gi|257833018|gb|EEV59439.1| holliday junction DNA helicase RuvA [Enterococcus faecium Com12] gi|292643845|gb|EFF61960.1| Holliday junction DNA helicase RuvA [Enterococcus faecium PC4.1] Length = 200 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 44/205 (21%), Positives = 90/205 (43%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G + + Y++++ G+ Y I K+ ++V +R+D L Sbjct: 1 MYEYLTGVVTFINPYYIVVETNGIGYQIAL-GNPYRYSSKLNQKIKIYVHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++Q F+ L SV G+G + A+ +++ + L++++ + + + PG+ K Sbjct: 60 YGFDSLEEKQLFLRLVSVSGIGPKSALAIMASEDHSGLIQAVESSDVTYLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK LS + + A+ AL LGY + Sbjct: 120 AQQMILDLKGKFGELSIDTPFSLFDEAT-----TKDATALSEAMEALSALGYSDREIKRV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + KE + + +R AL+ + Sbjct: 175 EKQL--KEVDNQTTDEYLRQALKLM 197 >gi|304436498|ref|ZP_07396472.1| crossover junction ATP-dependent DNA helicase RuvA [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370544|gb|EFM24195.1| crossover junction ATP-dependent DNA helicase RuvA [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 199 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 97/205 (47%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG +KG + DY L+DV V Y ++ +T + + L++ T++R+D I L Sbjct: 1 MIGFLKGKATHITSDYCLLDVHDVGYRVFISNQTRAHI-SPSAEVMLYIHTNVREDAILL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S + F+ L + G+G +VA G+LS T + + ++ K I ++PGI K Sbjct: 60 YGFFSREEYDLFLHLIGISGIGPKVAQGILSSATVNDFYRMVQQKDVKGITKLPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K +S + + S A AL+ LG+ + Sbjct: 120 AERILLELKDKLSDVSVADLPE----GDNNVGTKTENSMIAEATEALLTLGFQDSEIQR- 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ + + ++IR AL + Sbjct: 175 ---VFRQRHSCQNTEELIRYALAEL 196 >gi|257878807|ref|ZP_05658460.1| holliday junction DNA helicase RuvA [Enterococcus faecium 1,230,933] gi|257881445|ref|ZP_05661098.1| holliday junction DNA helicase RuvA [Enterococcus faecium 1,231,502] gi|257885716|ref|ZP_05665369.1| holliday junction DNA helicase RuvA [Enterococcus faecium 1,231,501] gi|257890666|ref|ZP_05670319.1| holliday junction DNA helicase RuvA [Enterococcus faecium 1,231,410] gi|257899427|ref|ZP_05679080.1| holliday junction DNA helicase RuvA [Enterococcus faecium Com15] gi|258615122|ref|ZP_05712892.1| Holliday junction DNA helicase RuvA [Enterococcus faecium DO] gi|261207080|ref|ZP_05921769.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TC 6] gi|289565918|ref|ZP_06446358.1| Holliday junction DNA helicase RuvA [Enterococcus faecium D344SRF] gi|293556856|ref|ZP_06675417.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1039] gi|293563770|ref|ZP_06678209.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1162] gi|293570773|ref|ZP_06681823.1| holliday junction DNA helicase RuvA [Enterococcus faecium E980] gi|294614616|ref|ZP_06694520.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1636] gi|294618498|ref|ZP_06698062.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1679] gi|294621205|ref|ZP_06700390.1| holliday junction DNA helicase RuvA [Enterococcus faecium U0317] gi|314938831|ref|ZP_07846102.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0133a04] gi|314943637|ref|ZP_07850391.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0133C] gi|314948716|ref|ZP_07852089.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0082] gi|314952166|ref|ZP_07855184.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0133A] gi|314991860|ref|ZP_07857317.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0133B] gi|314996573|ref|ZP_07861608.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0133a01] gi|257813035|gb|EEV41793.1| holliday junction DNA helicase RuvA [Enterococcus faecium 1,230,933] gi|257817103|gb|EEV44431.1| holliday junction DNA helicase RuvA [Enterococcus faecium 1,231,502] gi|257821572|gb|EEV48702.1| holliday junction DNA helicase RuvA [Enterococcus faecium 1,231,501] gi|257827026|gb|EEV53652.1| holliday junction DNA helicase RuvA [Enterococcus faecium 1,231,410] gi|257837339|gb|EEV62413.1| holliday junction DNA helicase RuvA [Enterococcus faecium Com15] gi|260078708|gb|EEW66410.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TC 6] gi|289162291|gb|EFD10151.1| Holliday junction DNA helicase RuvA [Enterococcus faecium D344SRF] gi|291592518|gb|EFF24123.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1636] gi|291595255|gb|EFF26584.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1679] gi|291599201|gb|EFF30233.1| holliday junction DNA helicase RuvA [Enterococcus faecium U0317] gi|291600940|gb|EFF31231.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1039] gi|291604251|gb|EFF33746.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1162] gi|291609245|gb|EFF38517.1| holliday junction DNA helicase RuvA [Enterococcus faecium E980] gi|313589262|gb|EFR68107.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0133a01] gi|313593565|gb|EFR72410.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0133B] gi|313595698|gb|EFR74543.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0133A] gi|313597674|gb|EFR76519.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0133C] gi|313641842|gb|EFS06422.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0133a04] gi|313644888|gb|EFS09468.1| Holliday junction DNA helicase RuvA [Enterococcus faecium TX0082] Length = 200 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 44/205 (21%), Positives = 90/205 (43%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G + + Y++++ G+ Y I K+ ++V +R+D L Sbjct: 1 MYEYLTGVVTFINPYYIVVETNGIGYQIAL-GNPYRYSSKLNQKIKIYVHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++Q F+ L SV G+G + A+ +++ + L++++ + + + PG+ K Sbjct: 60 YGFDSLEEKQLFLRLVSVSGIGPKSALAIMASEDHSGLIQAVESSDVTYLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK LS + + A+ AL LGY + Sbjct: 120 AQQMILDLKGKFGELSIDTPFSLFDEAN-----TKDATALSEAMEALSALGYSDREIKRV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + KE + + +R AL+ + Sbjct: 175 EKQL--KEVDNQTTDEYLRQALKLM 197 >gi|313203476|ref|YP_004042133.1| holliday junction DNA helicase subunit ruva [Paludibacter propionicigenes WB4] gi|312442792|gb|ADQ79148.1| Holliday junction DNA helicase subunit RuvA [Paludibacter propionicigenes WB4] Length = 196 Score = 147 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 100/205 (48%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I L YV+++ G+ Y I+ + T S LG+ L+V +R+D L Sbjct: 1 MIDYIKGEISELTPAYVVLETAGIGYFIHITLPTFSFLGE-HTSAKLYVYESIREDAHVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +RQ F+LL SV G+GA A ++S +A E+ + I N + I GI K Sbjct: 60 YGFRLQSERQLFLLLISVSGIGANTARMIMSSYSAQEIQDMIASGNVSALNAIKGIGTKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + + + A+SALV LG+ + Sbjct: 120 AQRIIVDLKDKIMKSAGGSEI-------ISLVPNVQNEKKEEAVSALVMLGFAASASQKV 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +++++ + Q+I+LAL+ + Sbjct: 173 VDKIVQEQPALK-VEQLIKLALKMM 196 >gi|20455269|sp|Q9L9C4|RUVA_RHIET RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|7110154|gb|AAF36813.1|AF175525_1 RuvA [Rhizobium etli] Length = 206 Score = 147 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 83/208 (39%), Positives = 126/208 (60%), Gaps = 5/208 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + EDYVL+DVQGVCY+ YC RTLS LG G+ C LF+ET++R+DQ++L Sbjct: 1 MIGKLKGTIDEIGEDYVLVDVQGVCYVAYCSARTLSKLGSAGEACVLFIETYVREDQLKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELV--ESIILQNSKVIAQIPGISM 118 FGF++ L+R+WF LL A SR I LQ+ +++ PG+ Sbjct: 61 FGFMTALEREWFNLLSKASRASAPRWRSPCSRPLNARPSSPMPIALQDRAAVSRAPGVGP 120 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K+A R++TELK +A + + + ++ K + + +A+SAL NLGY +DQA Sbjct: 121 KVAMRLVTELKNRAPAYAG---EAINIALKRELGEGVAAAPVADAVSALTNLGYSRDQAA 177 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 AV + +K AD +++IRL L+ ++ Sbjct: 178 NAVAAAMKTAGEGADSAKLIRLGLKELA 205 >gi|294674697|ref|YP_003575313.1| Holliday junction DNA helicase RuvA [Prevotella ruminicola 23] gi|294472323|gb|ADE81712.1| Holliday junction DNA helicase RuvA [Prevotella ruminicola 23] Length = 200 Score = 147 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 100/205 (48%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + L ++ GV Y + + T S + + L+V +R+D L Sbjct: 1 MIEYIKGELTELTPALATVEACGVGYGLNISLNTFSAI-QGKKEVKLYVYEAIREDAHVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF++ +R+ F+LL +V GVGA A +LS ++ EL +I + N+K+I I GI Sbjct: 60 FGFVNKKEREMFLLLITVSGVGANTARMMLSGMSVAELCNAISMGNAKLIQGIKGIGKMT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +L+ K ++L + Q AI+AL LG+ Sbjct: 120 AQRIIVDLRDKIVTLGISDEIPAGG----QIAAPVNNQVKDEAIAALTMLGFAPAPTQKV 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+ +L+ N A ++++LAL+ I Sbjct: 176 VLQILQANPN-APVEEVVKLALKQI 199 >gi|16079826|ref|NP_390652.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp. subtilis str. 168] gi|221310713|ref|ZP_03592560.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp. subtilis str. 168] gi|221315037|ref|ZP_03596842.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319958|ref|ZP_03601252.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp. subtilis str. JH642] gi|221324239|ref|ZP_03605533.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp. subtilis str. SMY] gi|321312303|ref|YP_004204590.1| Holliday junction DNA helicase RuvA [Bacillus subtilis BSn5] gi|3183558|sp|O05392|RUVA_BACSU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|2635239|emb|CAB14734.1| Holliday junction DNA helicase [Bacillus subtilis subsp. subtilis str. 168] gi|6977805|emb|CAB75330.1| RuvA protein [Bacillus subtilis subsp. subtilis str. 168] gi|291485185|dbj|BAI86260.1| Holliday junction DNA helicase motor protein [Bacillus subtilis subsp. natto BEST195] gi|320018577|gb|ADV93563.1| Holliday junction DNA helicase RuvA [Bacillus subtilis BSn5] Length = 201 Score = 147 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 99/205 (48%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG I+ + Y++I+ G+ Y I+ P + K T+F H+R+D L Sbjct: 1 MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPNPFIY---KERSQETIFTYHHIREDAFSL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F L +V G+G + A+ +L ++++I ++ + + PG+ K Sbjct: 58 YGFSTREEKALFTKLLNVTGIGPKGALAILGSGDPGAVIQAIENEDEAFLVKFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + + +++ + + + A+ AL LGY + + Sbjct: 118 ARQIILDLKGKLADVVPEMIENLFNHEERLEKQTAE-TALEEALEALRVLGYAEKEIKKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + KE+ Q ++ AL+ + Sbjct: 177 LPHL--KEEIGLTTDQYVKKALQKL 199 >gi|297626360|ref|YP_003688123.1| Holliday junction ATP-dependent DNA helicase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922125|emb|CBL56693.1| Holliday junction ATP-dependent DNA helicase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 203 Score = 147 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 52/208 (25%), Positives = 106/208 (50%), Gaps = 9/208 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + + ++++IDV GV + + T S L + G T+F +R+D ++L Sbjct: 1 MIAQLHGKVAAIGANWLVIDVAGVGFQVSTTPNTTSAL-RTGQTATVFTSLVVREDAMKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F L ++ GVG ++A+ ++S +T E ++ ++ + +PGI K Sbjct: 60 YGFGGTDERDCFELCRTASGVGPKLALAIVSVLTPEEFATAVRTEDLPRLCTVPGIGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELK + +L ++ N + P++ ++ L +LG+ A A Sbjct: 120 AQKIVIELKDRVDALF------VAPTNGSASVAPVTPAWQEQVMAGLESLGWSSRDAEAA 173 Query: 181 VVSV--LKKEKNIADDSQIIRLALRAIS 206 +V L +E A + +++ AL +++ Sbjct: 174 CETVAPLAEEDPEATVAALMKAALASLA 201 >gi|188590168|ref|YP_001920351.1| Holliday junction DNA helicase RuvA [Clostridium botulinum E3 str. Alaska E43] gi|251779255|ref|ZP_04822175.1| Holliday junction DNA helicase RuvA [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|229560021|sp|B2V337|RUVA_CLOBA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|188500449|gb|ACD53585.1| Holliday junction DNA helicase RuvA [Clostridium botulinum E3 str. Alaska E43] gi|243083570|gb|EES49460.1| Holliday junction DNA helicase RuvA [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 198 Score = 147 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 105/205 (51%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG G+ +DY++I+ G+ Y I+ T+S + G+ +++E +R+D I L Sbjct: 1 MYEYIKGEYMGINKDYIIIENNGIGYKIFTSGATMSSMPCCGEKIKIYIEQIVREDFIGL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S + F LL S+ GVGA+ A+ +LS L +II + K + + GI KI Sbjct: 61 YGFESLEELDMFKLLLSINGVGAKAALSLLSISRLNNLKYAIITGDEKHLCRGTGIGKKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K S + ++C+++ A+SAL++LGY + +A Sbjct: 121 AGRIILELKDKLKS-----DELLNCIDEFDDVTQDNSLALSEALSALISLGYTEKEAEKV 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + V K E II+ AL + Sbjct: 176 LKDVDKSE----SVENIIKSALVKL 196 >gi|304317016|ref|YP_003852161.1| Holliday junction DNA helicase RuvA [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778518|gb|ADL69077.1| Holliday junction DNA helicase RuvA [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 188 Score = 147 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 99/205 (48%), Gaps = 19/205 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I DYV+++ G+ + I P TL L D L+ H+++D + Sbjct: 1 MIDYIKGAIVERGIDYVVVETLGIGFKIIVPTSTLRELPNTNDIIKLYTYLHVKEDGFQF 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + + F L +V GVG + A+ +LS I+ +I +SK+I + PGI K Sbjct: 61 YGFLTINEMEIFKKLIAVNGVGPKAAVSILSTISIDNFYNAIKNGDSKIIEKSPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K A + + + ++AL++LGY + ++ +A Sbjct: 121 AQRIILELKDKL--------------FINNAEAVKIDDASEDVLNALLSLGYTRQESISA 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + + +R AL+ + Sbjct: 167 LYGI-----DCTNTENALREALKKL 186 >gi|163790795|ref|ZP_02185221.1| Holliday junction DNA helicase RuvA [Carnobacterium sp. AT7] gi|159873975|gb|EDP68053.1| Holliday junction DNA helicase RuvA [Carnobacterium sp. AT7] Length = 204 Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 100/205 (48%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ Y ++ K+ T++V +R+D I L Sbjct: 1 MFEYIKGIVTFVSPAYIVLENSGIGYQLFI-ANPFRFSSKLNAEATIYVHQAVREDAITL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++Q ++ L SV G+G + + +L+ LV++I +++ + + PG+ K Sbjct: 60 YGFKDYTEKQLYLKLLSVSGIGPKSGLAILANDDHQGLVQAIENEDAAYLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK L S+ Q + + +++ + + S A+ AL LGY + Sbjct: 120 ASQIVLDLKGKLADL-SLTQAESTTDYQQELVLSTNYSHVTEAVEALEALGYSAKEIKKI 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + K K +R ALR + Sbjct: 179 EPQIRKLNKE--STDAYLREALRLL 201 >gi|182439809|ref|YP_001827528.1| Holliday junction DNA helicase RuvA [Streptomyces griseus subsp. griseus NBRC 13350] gi|326780473|ref|ZP_08239738.1| Holliday junction ATP-dependent DNA helicase ruvA [Streptomyces cf. griseus XylebKG-1] gi|229560130|sp|B1W3G3|RUVA_STRGG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|178468325|dbj|BAG22845.1| putative Holliday junction DNA helicase subunit B [Streptomyces griseus subsp. griseus NBRC 13350] gi|326660806|gb|EGE45652.1| Holliday junction ATP-dependent DNA helicase ruvA [Streptomyces cf. griseus XylebKG-1] Length = 208 Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats. Identities = 54/212 (25%), Positives = 99/212 (46%), Gaps = 13/212 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L +I+V G+ + C TL+ L ++G L +R+D + L Sbjct: 1 MIAFVSGPVAALAPTTAVIEVGGIGMAVQCTPHTLADL-RVGREARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +D +RQ F LLQ+ GVG R+A +L+ + L ++ + K + + GI K Sbjct: 60 YGFANDDERQVFELLQTASGVGPRLAQAMLATHSPDALRLAVSTGDEKALTAVSGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK + + + + ++ + +AL+ LGY +A A Sbjct: 120 AQKLLLELKDRLG------EPVGAHIGQQGIGTPVTSGWRDQLQAALIGLGYASREADEA 173 Query: 181 VVSVLKK------EKNIADDSQIIRLALRAIS 206 V +V + E Q++R AL+ ++ Sbjct: 174 VNAVAPQAEAAVAEGTAPPVPQLLRAALQTLN 205 >gi|86605208|ref|YP_473971.1| Holliday junction DNA helicase RuvA [Synechococcus sp. JA-3-3Ab] gi|123765632|sp|Q2JWZ2|RUVA_SYNJA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|86553750|gb|ABC98708.1| Holliday junction DNA helicase RuvA [Synechococcus sp. JA-3-3Ab] Length = 204 Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats. Identities = 50/209 (23%), Positives = 97/209 (46%), Gaps = 11/209 (5%) Query: 1 MIGKIKGNIEGLY---EDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ 57 MI + G++ + + ++VQG+ Y + P R L L IG+ +F +R+ + Sbjct: 1 MIAFLSGHLVAIEWGERSSLTVEVQGIGYRVKAPARFLKQLPPIGEPVRVFTHLVVRETE 60 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 + L+GF S +R F+ L V GVG + + +L+ ELV++++ +N ++++ PG+ Sbjct: 61 LVLYGFGSPAERDVFVELIKVSGVGPALGLALLNTFGLPELVQAVVTENVRLLSLTPGVG 120 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 K A R+ ELK K ++ P+ AL+ LGY + Sbjct: 121 HKTAQRLALELKTKLAHWRQGLEN-----ADRPLAGGPPPAIREEVEMALLALGYSLQEI 175 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ ++ + + + +R A+ +S Sbjct: 176 QAALQALPSQPRP---TEEWLRDAITYLS 201 >gi|87302215|ref|ZP_01085040.1| putative holliday junction DNA helicase RuvA [Synechococcus sp. WH 5701] gi|87283140|gb|EAQ75096.1| putative holliday junction DNA helicase RuvA [Synechococcus sp. WH 5701] Length = 221 Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats. Identities = 50/217 (23%), Positives = 91/217 (41%), Gaps = 11/217 (5%) Query: 1 MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MIG ++G++ ++ +L+ GV Y + R L G L+ +R D Sbjct: 1 MIGWLQGHVAEPWQQGNRCGLLLACAGVGYEVQLTRRHWELLPPAGSPLCLYTHQSIRDD 60 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 LFGF + +R F LL +V GVG ++A+ +L + ELV +I+ + + + + PG+ Sbjct: 61 GWTLFGFGARHERDLFRLLVAVSGVGPQMALALLGTMPCEELVRAIVQADLRRLCRAPGV 120 Query: 117 SMKIASRIMTELKGKAIS------LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL 170 + A R+ EL+GK + S L L Sbjct: 121 GKRTAERLAVELRGKLAESFGAAAAAGDDDLLDGVAGSTDGDPGPAASTREELQLTLTAL 180 Query: 171 GYGQDQATTAVVSVLKKEKNIA-DDSQIIRLALRAIS 206 GY + + A+ ++ ++ + A D + LR ++ Sbjct: 181 GYEPLEISRALRALGREGLDPAHDADAWLSACLRWLA 217 >gi|196250113|ref|ZP_03148807.1| Holliday junction DNA helicase RuvA [Geobacillus sp. G11MC16] gi|196210297|gb|EDY05062.1| Holliday junction DNA helicase RuvA [Geobacillus sp. G11MC16] Length = 194 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 93/205 (45%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G ++ + Y++ID G+ Y I+ P + T++ ++R+D L Sbjct: 1 MIEFIRGYVDYICPQYIVIDHNGIGYEIFTP-NPFAFEESREAAVTVYTYEYVREDVHAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L V G+G + + +L+ EL +I +N + + PG+ K Sbjct: 60 YGFLTREERNLFAKLLQVSGIGPKGGLAILAAGRPDELARAIEEENEAFLCKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK S + S+ AI+AL LGY + + Sbjct: 120 ARQMILDLKGKLTMFSMPTAPQPAA---------SLSGELAEAIAALKALGYAEREIEKI 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ ++ Q ++ AL + Sbjct: 171 IPALREE---TMSTEQYVKRALAML 192 >gi|239637553|ref|ZP_04678525.1| holliday junction DNA helicase RuvA [Staphylococcus warneri L37603] gi|239596771|gb|EEQ79296.1| holliday junction DNA helicase RuvA [Staphylococcus warneri L37603] Length = 200 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 101/205 (49%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + L+ +V++DV GV Y I P + + +F +R+D L Sbjct: 1 MYAYIKGKLTQLFPTHVVVDVNGVGYEIQTP-NSYRFQKYLDKEVQIFTSLIVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+++ ++ F+ L V G+G + A+ +L+ T E+ ++I +N + + PGI K Sbjct: 60 YGFINEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKQAIENENDTYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK ++ +N + S A+ AL LGY + + + Sbjct: 120 ARQIVLDLKGKVQITEENSDTLLNVMN----DSNANESMIKEAMLALEALGYSKRELSK- 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V VLK+ N+ + +++ L+ + Sbjct: 175 VEKVLKQS-NMDSVDEAVKIGLQTL 198 >gi|288555342|ref|YP_003427277.1| Holliday junction DNA helicase RuvA [Bacillus pseudofirmus OF4] gi|288546502|gb|ADC50385.1| Holliday junction DNA helicase RuvA [Bacillus pseudofirmus OF4] Length = 205 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 54/206 (26%), Positives = 101/206 (49%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G + + YV++D QG+ Y IYCP ++ + ++ H+R+D IRL Sbjct: 1 MIDYINGVLVDIETRYVVLDHQGLGYQIYCP-NPYQFSKQLDEKVKIYTYQHVREDLIRL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L +V G+G + A+ +L+ +V +I ++ + + PG+ K Sbjct: 60 FGFESKSERALFEKLLNVSGIGPKGALAILASGQPEHVVRAIEEEDEAFLVKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSC-VNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I+ +LKGK S + + + V+++ + + A+ AL LGY + + Sbjct: 120 ARQIILDLKGKLDEFSPNLFNESTGLVSEKMTKVNKENTELEEALEALRALGYVEKELKK 179 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + +++ I+ AL+ + Sbjct: 180 VRPKLEQEDMA---TDAYIKKALQLM 202 >gi|332653059|ref|ZP_08418804.1| holliday junction DNA helicase RuvA [Ruminococcaceae bacterium D16] gi|332518205|gb|EGJ47808.1| holliday junction DNA helicase RuvA [Ruminococcaceae bacterium D16] Length = 213 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 92/205 (44%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G + + V+ID GV Y TLS L K G+ +F ++R+D + L Sbjct: 12 MFYYLNGTVAHIEPYLVVIDCGGVGYACRTTSYTLSAL-KKGEKGKVFTHLNVREDAMEL 70 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + F L SV GVG + A+ +LS T L SII + K + GI KI Sbjct: 71 YGFATQEELNLFQQLISVSGVGPKAALSILSSNTPANLALSIITGDEKALTCAQGIGKKI 130 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K +V + I A +AL LGY Q + A Sbjct: 131 AQRVILELKDKLAKGQAVNGAGETYGGTGVTVIPENK--LSEASAALAVLGYTQGEINVA 188 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + + QII+ AL+ + Sbjct: 189 LKGI---DLDSLTLEQIIKQALKKM 210 >gi|323706513|ref|ZP_08118072.1| Holliday junction DNA helicase RuvA [Thermoanaerobacterium xylanolyticum LX-11] gi|323534143|gb|EGB23935.1| Holliday junction DNA helicase RuvA [Thermoanaerobacterium xylanolyticum LX-11] Length = 186 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 21/205 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG+I DYV+I+ G+ + I P TLS L + L+ H+++D +L Sbjct: 1 MIDYIKGHIVEKGIDYVVIETLGIGFKIIVPRSTLSHLTNTSEIIKLYTYMHVKEDGFQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + + F L +V GVG + A+ +LS I+ ++I +SK I + PGI K Sbjct: 61 YGFLTTNEVEIFKKLIAVNGVGPKAAVSILSTISIEGFYDAIRNSDSKAIEKSPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K AH + + + + AL++LGY + ++ A Sbjct: 121 AQRIILELKDKLT----------------FAHDVKLDDLSNDVVDALLSLGYTKQESIKA 164 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + V + ++ ++ AL+ + Sbjct: 165 LEGV-----DCSNLESALKEALKKL 184 >gi|315640091|ref|ZP_07895215.1| crossover junction ATP-dependent DNA helicase RuvA [Enterococcus italicus DSM 15952] gi|315484154|gb|EFU74626.1| crossover junction ATP-dependent DNA helicase RuvA [Enterococcus italicus DSM 15952] Length = 200 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 94/205 (45%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ Y + GK + ++V +R+D L Sbjct: 1 MYEFIKGVVADIQPSYIVLEANGIGYQLVM-GNPYRYSGKKTEEVKVYVHLIVREDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ F+ L SV G+G + A+ +++ L+ +I + + + PG+ K Sbjct: 60 YGFEKLQEKLLFLRLISVSGIGPKSAIAIMANDDHEGLIAAIESDDVTYLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK L+ + +++ + S AISAL LGY + + Sbjct: 120 AQQMILDLKGKLGELAGELTGNLAM-----PLFDTDTSALTEAISALSALGYSEREIKRV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 ++ K+ + +R AL+ + Sbjct: 175 ETTLKKE--GAHSTDEYLRKALKLL 197 >gi|332826883|gb|EGJ99683.1| Holliday junction ATP-dependent DNA helicase ruvA [Dysgonomonas gadei ATCC BAA-286] Length = 193 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 68/205 (33%), Positives = 99/205 (48%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I L V ++ GV Y I + T S L LF+ +R+D +L Sbjct: 1 MIDYIKGEITELTPASVTLETYGVGYFISISLNTYSNLTGKKS-AQLFIYEAIREDAHQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R+ FMLL SV G+GA +LS + EL I NS ++ + GI +K Sbjct: 60 FGFFDKQERELFMLLISVSGIGASTGRMILSSMNTQELANVIASGNSDMLKTVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K +S + Q DM A++ALV LG+ Q + Sbjct: 120 AQRVIVDLKDKI-KVSGIEQVDMFASGHPSG---------EEAVAALVMLGFTQQASQKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +LK +K + QII+ AL+ + Sbjct: 170 VAKILK-DKADSTVEQIIKTALKML 193 >gi|225572217|ref|ZP_03781081.1| hypothetical protein RUMHYD_00511 [Blautia hydrogenotrophica DSM 10507] gi|225040279|gb|EEG50525.1| hypothetical protein RUMHYD_00511 [Blautia hydrogenotrophica DSM 10507] Length = 201 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 104/205 (50%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + G+ E +L++ G+ Y I+ P+ G + H+R+D ++L Sbjct: 1 MIAFMKGTLAGIEETKILLEHDGIGYEIFIPMDGRVDRLYTGQELMVHTYLHVREDVLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ D + F LL V GVG + A+G+LS I+A EL +++ ++ K I++ PGI K Sbjct: 61 YGFLTRDDLEIFRLLLGVNGVGPKAALGILSAISADELRFAVLAEDIKTISKAPGIGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK K +L ++ + A + A AL LGYG QA A Sbjct: 121 AQKLVLELKDKL-NLQDAFEKKLEHEYSSSAS-QEITDARQEAAEALTALGYGSTQALQA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V D +++ AL+ + Sbjct: 179 VRKV--DGWEKMDVETLLKAALKNM 201 >gi|323344791|ref|ZP_08085015.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella oralis ATCC 33269] gi|323094061|gb|EFZ36638.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella oralis ATCC 33269] Length = 204 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 57/209 (27%), Positives = 102/209 (48%), Gaps = 10/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM----RQD 56 MI I+G + L +++V G+ Y + + T S + + + L+V + R D Sbjct: 1 MIEYIRGELAELTPALAVVEVAGIGYALSISLNTYSAI-QGKEKVKLYVHEALVTGGRDD 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF S +R+ + LL +V GVGA A +LS I+ EL I + +++ + GI Sbjct: 60 SFTLYGFASKQERELYRLLITVSGVGANTARMILSTISPAELCNVIANGDERMLKAVKGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 ++ A RI+ +LK K ++ + +S + A+SAL LG+ Sbjct: 120 GLRTAQRIIVDLKDKIVNSGIATELHVSS----EPAAMVNNGIKDEAVSALTMLGFSPAP 175 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + AV +LK + ++ Q+++LAL+ I Sbjct: 176 SAKAVTEILKADPDLP-VEQVVKLALKQI 203 >gi|256825358|ref|YP_003149318.1| Holliday junction DNA helicase subunit RuvA [Kytococcus sedentarius DSM 20547] gi|256688751|gb|ACV06553.1| Holliday junction DNA helicase subunit RuvA [Kytococcus sedentarius DSM 20547] Length = 209 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 56/210 (26%), Positives = 99/210 (47%), Gaps = 6/210 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G I + D+++++V GV + P + + + + G L +R+D + L Sbjct: 1 MIASLSGTITHVGLDHLVVEVGGVGMRVLVPPQVAAEV-RTGQEARLETSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL R+ F +QSV GVG R+A+ +++ ++ EL ++ ++ + +PGI K Sbjct: 60 FGFLDADTREVFETVQSVSGVGPRLALALVAVLSPAELSRAVHTEDLAALTSVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL GK + + + S P++A AL LG+ QAT A Sbjct: 120 AQRLVLELVGKLPA-DLGGGAAPTTTEQSAGGDPSEPAWAPQVRDALEGLGWNTAQATKA 178 Query: 181 ----VVSVLKKEKNIADDSQIIRLALRAIS 206 V + + ++R ALR + Sbjct: 179 TRTVVEQHAQDTGPPPELPVLLREALREAA 208 >gi|330683931|gb|EGG95698.1| Holliday junction DNA helicase RuvA [Staphylococcus epidermidis VCU121] Length = 200 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 103/205 (50%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + L+ +V++DV GV Y I P + + +F +R+D L Sbjct: 1 MYAYIKGKLTQLFPTHVVVDVNGVGYEIQTP-NSYRFQKYLDKEVQIFTSLIVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+++ ++ F+ L V G+G + A+ +L+ T E+ ++I +N + + PGI K Sbjct: 60 YGFINEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKQAIENENDAYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK ++ +N+ A+ S A+ AL LGY + + + Sbjct: 120 ARQIVLDLKGKVQITEENTDTLLNVMNESNANE----SMIKEAMLALEALGYSKRELSK- 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V VLK+ N+ + +++ L+ + Sbjct: 175 VEKVLKQS-NMESVDEAVKIGLQTL 198 >gi|138896159|ref|YP_001126612.1| Holliday junction DNA helicase RuvA [Geobacillus thermodenitrificans NG80-2] gi|166230554|sp|A4IRB3|RUVA_GEOTN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|134267672|gb|ABO67867.1| Holliday junction DNA helicase RuvA [Geobacillus thermodenitrificans NG80-2] Length = 194 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 94/205 (45%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G ++ + +Y++ID G+ Y I+ P + T++ ++R+D L Sbjct: 1 MIEFIRGYVDYICPEYIVIDHNGIGYEIFTP-NPFAFEESREAAVTVYTYEYVREDVHAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +R F L V G+G + + +L+ EL +I +N + + PG+ K Sbjct: 60 YGFLTREERNLFAKLLQVSGIGPKGGLAILAAGRPDELARAIEEENEAFLCKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK S + S+ AI+AL LGY + + Sbjct: 120 ARQMILDLKGKLTMFSMPTAPRPAA---------SLSGELAEAIAALKALGYAEREIEKI 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ ++ Q ++ AL + Sbjct: 171 IPALREE---TMSTEQYVKRALAML 192 >gi|293567841|ref|ZP_06679182.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1071] gi|291589426|gb|EFF21233.1| holliday junction DNA helicase RuvA [Enterococcus faecium E1071] Length = 200 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 89/205 (43%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G + + Y++++ G+ Y I K+ ++V +R+D L Sbjct: 1 MYEYLTGVVTFINPYYIVVETNGIGYQIAL-GNPYRYSSKLNQKIKIYVHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++Q F+ L SV G+G + A+ +++ + L++++ + + + PG+ K Sbjct: 60 YGFDSLEEKQLFLRLVSVSGIGPKSALAIMASEDHSGLIQAVESSDVTYLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK LS + + A+ AL LGY + Sbjct: 120 AQQMILDLKGKFGELSIDTPFSLFDEAN-----TKDATALSEAMEALSALGYSDREIKRV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + K + + +R AL+ + Sbjct: 175 EKQLKK--VDNQTTDEYLRQALKLM 197 >gi|256160418|ref|ZP_05458107.1| Holliday junction DNA helicase RuvA [Brucella ceti M490/95/1] gi|265998786|ref|ZP_06111343.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella ceti M490/95/1] gi|262553475|gb|EEZ09244.1| holliday junction ATP-dependent DNA helicase ruvA [Brucella ceti M490/95/1] Length = 193 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 85/195 (43%), Positives = 130/195 (66%), Gaps = 2/195 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + ED+ +IDV GV Y+ +C RTL LG G+ LF+ET++R+D IRL Sbjct: 1 MIGKLKGVIDEIAEDHAVIDVHGVGYVAFCSARTLGNLGGAGEAAILFIETYVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + L+R+WF LLQ+VQGVGA+VA+ VL ++ +EL +I L++ ++++ PG+ K+ Sbjct: 61 YGFATQLEREWFRLLQNVQGVGAKVALAVLGTLSPSELANAIALRDIAMVSRAPGVGKKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELK KA + + + K++ + P+ +A+SAL NLGY +DQA A Sbjct: 121 AERIVTELKNKAPAFAGEASGTIGL--KQELGAGAAPAPVADAVSALSNLGYSRDQAANA 178 Query: 181 VVSVLKKEKNIADDS 195 V + LK+ AD + Sbjct: 179 VAAALKETGEGADSA 193 >gi|41407135|ref|NP_959971.1| Holliday junction DNA helicase motor protein [Mycobacterium avium subsp. paratuberculosis K-10] gi|118465009|ref|YP_882656.1| Holliday junction DNA helicase RuvA [Mycobacterium avium 104] gi|81414560|sp|Q741Q1|RUVA_MYCPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230566|sp|A0QIB8|RUVA_MYCA1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|41395486|gb|AAS03354.1| RuvA [Mycobacterium avium subsp. paratuberculosis K-10] gi|118166296|gb|ABK67193.1| holliday junction DNA helicase RuvA [Mycobacterium avium 104] Length = 199 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 92/205 (44%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +I+ GV Y + TLS L + G L +R+D + L Sbjct: 1 MIASVRGEVLEVALDHAVIEAAGVGYRVNATPSTLSTL-RTGTQARLITAMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F+ L SV GVG R+AM L+ A L +++ + + ++PGI + Sbjct: 60 YGFTDAETRDLFLTLLSVSGVGPRLAMATLAVHDAGALRQALHDGDVAALTRVPGIGKRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K + + + N + ALV LG+ QA A Sbjct: 120 AERMVLELRDKIGAAGAAGAPAGAARNGHAVRGP--------VVEALVGLGFAAKQAEEA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 VL E A S +R AL + Sbjct: 172 TDKVLAAEPE-AGTSGALRAALSLL 195 >gi|154498068|ref|ZP_02036446.1| hypothetical protein BACCAP_02049 [Bacteroides capillosus ATCC 29799] gi|150273058|gb|EDN00215.1| hypothetical protein BACCAP_02049 [Bacteroides capillosus ATCC 29799] Length = 201 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 93/205 (45%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + + ++D GV Y TL+ L + G+ TL+ ++R+D + L Sbjct: 1 MFYYVKGPVVHMAPYLAVVDCGGVGYACRTTNNTLARL-RKGETATLYTHLNVREDAMEL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ + F LL SV GVG + A+ +LS + L SII + K + PGI KI Sbjct: 60 YGFASENELSCFQLLISVSGVGPKAALSILSSTSPEGLATSIITGDEKALTVAPGIGKKI 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K S I + A LGY Q +A A Sbjct: 120 AQRIILELKDKLAKGQLSTPGGESYGGTGVTVIPQNKASEAAAAL--AVLGYSQAEAAAA 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ + +II+ AL+ + Sbjct: 178 LKNI---DMETLALEEIIKQALKKM 199 >gi|255101977|ref|ZP_05330954.1| Holliday junction DNA helicase RuvA [Clostridium difficile QCD-63q42] gi|255307845|ref|ZP_05352016.1| Holliday junction DNA helicase RuvA [Clostridium difficile ATCC 43255] gi|328887746|emb|CAJ69694.2| Holliday junction ATP-dependent DNA helicase RuvA [Clostridium difficile] Length = 200 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 54/202 (26%), Positives = 98/202 (48%), Gaps = 11/202 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +E +Y D ++++ G+ Y I T+ L ++G+ ++ + +R+D + L Sbjct: 1 MYSYIKGTVEEIYIDSIVVENNGIGYKINVSSNTIMNL-QVGEATKIYTKLIVREDDMSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF+S + + F LL SV +G +VA+ +LS + +L I+ ++ +++ PG+ K Sbjct: 60 CGFVSREELKMFELLTSVSKIGPKVALSILSFASPAQLGAYILSEDIGKLSKAPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + + + ++ ALV LGY ++ A Sbjct: 120 AERIVLELKDKVDKNNIEFEPTLLSQKPTLIS-------QDESVDALVALGYTLSESKEA 172 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 V K + + II+ AL Sbjct: 173 VQKCKK---DGMNTEAIIKKAL 191 >gi|146277278|ref|YP_001167437.1| Holliday junction DNA helicase RuvA [Rhodobacter sphaeroides ATCC 17025] gi|166200252|sp|A4WRW8|RUVA_RHOS5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|145555519|gb|ABP70132.1| Holliday junction DNA helicase RuvA [Rhodobacter sphaeroides ATCC 17025] Length = 224 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 67/206 (32%), Positives = 104/206 (50%), Gaps = 16/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGKI G ++ D+VLIDV+GV YI++ RTL+ + G+ L+ E +R+D ++L Sbjct: 1 MIGKISGILDFRGPDHVLIDVRGVGYIVHVSDRTLAAMPAPGEGVALYTELVVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++W LL +VQGVGA+ M +L + A + +I L +++ I PG+ KI Sbjct: 61 FGFTTMIEKEWHRLLMTVQGVGAKAGMAILGALGAEGVARAISLGDARSIQAAPGVGPKI 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI----------------NAI 164 A R++ ELK KA +L + + P+ +A+ Sbjct: 121 AQRVVLELKSKAPALMVMGGAAPARAAAVVEETPEEPAPRRKPSTRAAPPPAANHTGDAL 180 Query: 165 SALVNLGYGQDQATTAVVSVLKKEKN 190 SAL NLGY A AV Sbjct: 181 SALTNLGYQPSDAAQAVAQASGDNPQ 206 >gi|220912786|ref|YP_002488095.1| Holliday junction DNA helicase RuvA [Arthrobacter chlorophenolicus A6] gi|254766940|sp|B8H9D7|RUVA_ARTCA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|219859664|gb|ACL40006.1| Holliday junction DNA helicase RuvA [Arthrobacter chlorophenolicus A6] Length = 213 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 56/208 (26%), Positives = 102/208 (49%), Gaps = 13/208 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +ID+ G +Y +TLS L +G+ +F +R+D + L Sbjct: 1 MISFLRGTVAHVGLSTAVIDLNGAGMSVYATPQTLSRL-HVGEEGKVFTSLIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF D +R+ F +L SV GVG R+A+ VL+ + + ++K ++PGI K+ Sbjct: 60 FGFADDDEREVFEVLLSVSGVGPRLALAVLAVHDPEAIRVAAHTGDNKTFTKVPGIGPKV 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL GK + A + S+ ++A+ +LG+ + A+ + Sbjct: 120 AGRIVLELAGKLV---------PHGTAPAAATTAAEASWKPQVVAAMTSLGWSEKDASAS 170 Query: 181 VVSVLKKEKNIA---DDSQIIRLALRAI 205 + L E ++ + +I+R LR + Sbjct: 171 IDKALADEPEVSFRGNVPEILRTTLRWL 198 >gi|282878437|ref|ZP_06287223.1| Holliday junction DNA helicase RuvA [Prevotella buccalis ATCC 35310] gi|281299423|gb|EFA91806.1| Holliday junction DNA helicase RuvA [Prevotella buccalis ATCC 35310] Length = 204 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 56/209 (26%), Positives = 99/209 (47%), Gaps = 10/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM----RQD 56 MI I+G + L +++ GV Y + + T S + + L+V + R D Sbjct: 1 MIEYIRGELTELTPALAVLEAAGVGYGLNISLNTYSAI-QGKKEVKLYVHESLVTGGRDD 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 +GF S +R+ + LL +V GVGA A +LS ++ EL I + +++ + GI Sbjct: 60 NFTFYGFFSKQERELYRLLITVSGVGANTARMILSTLSPAELCNVIANGDERMLKAVKGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 +K A RI+ +L+ K +S + +S + S A+SAL LG+ Sbjct: 120 GLKTAQRIIVDLRDKIVSSGIATELHVSS----EPATAVDASIRDEAVSALTMLGFSPAP 175 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + V +LK + ++ Q+++LAL+ I Sbjct: 176 SAKVVEGILKSDPSLP-VEQVVKLALKQI 203 >gi|255656790|ref|ZP_05402199.1| Holliday junction DNA helicase RuvA [Clostridium difficile QCD-23m63] gi|296452380|ref|ZP_06894081.1| crossover junction ATP-dependent DNA helicase RuvA [Clostridium difficile NAP08] gi|296877729|ref|ZP_06901756.1| crossover junction ATP-dependent DNA helicase RuvA [Clostridium difficile NAP07] gi|296258710|gb|EFH05604.1| crossover junction ATP-dependent DNA helicase RuvA [Clostridium difficile NAP08] gi|296431262|gb|EFH17082.1| crossover junction ATP-dependent DNA helicase RuvA [Clostridium difficile NAP07] Length = 200 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 54/202 (26%), Positives = 98/202 (48%), Gaps = 11/202 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +E +Y D ++++ G+ Y I T+ L ++G+ ++ + +R+D + L Sbjct: 1 MYSYIKGTVEEIYIDSIVVENNGIGYKINVSSNTIMNL-QVGEATKIYTKLIVREDDMSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF+S + + F LL SV +G +VA+ +LS + +L I+ ++ +++ PG+ K Sbjct: 60 CGFVSREELKMFELLTSVSKIGPKVALSILSFASPAQLGAYILSEDIGKLSKAPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + + + ++ ALV LGY ++ A Sbjct: 120 AERIVLELKDKVDKNNIEFEPTLLSQKPTLIS-------QDESVDALVALGYTLAESKEA 172 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 V K + + II+ AL Sbjct: 173 VQKCKK---DGMNTEAIIKKAL 191 >gi|194017234|ref|ZP_03055846.1| holliday junction DNA helicase RuvA [Bacillus pumilus ATCC 7061] gi|194011102|gb|EDW20672.1| holliday junction DNA helicase RuvA [Bacillus pumilus ATCC 7061] Length = 201 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 51/205 (24%), Positives = 102/205 (49%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG I+ + YV+I+ GV Y +Y P + + K T++ ++++D L Sbjct: 1 MIEFVKGTIDYVCPQYVVIENGGVGYQVYSPNPFIYQINK---HETIYTYHYIKEDAFSL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F L +V G+G + A+ +L+ ++ +I ++ + + PG+ K Sbjct: 58 YGFQTREEKALFTKLLNVTGIGPKGALAILASGDPGAVISAIEREDEAFLIKFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + + ++ + + + A AL LGYG + Sbjct: 118 ARQIILDLKGKLADVVPEMIGNLFNHEDH-IQVETQQTALDEAFEALSVLGYGDREIKKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +LK+EKN+ Q ++ AL+ + Sbjct: 177 LP-LLKEEKNL-TTDQYVKKALQKM 199 >gi|84496343|ref|ZP_00995197.1| DNA recombination protein, RuvA [Janibacter sp. HTCC2649] gi|84383111|gb|EAP98992.1| DNA recombination protein, RuvA [Janibacter sp. HTCC2649] Length = 201 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + D V+I+V GV +++ RT + ++G T+ +R+D + L Sbjct: 1 MIASLSGRVAHVGLDRVVIEVGGVGMLVHTTPRTAGEV-RMGQDVTVSTTLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F +Q+V GVG R+A+ +LS +T + ++ + + +IPG+ K Sbjct: 60 FGFGSPSERDMFETVQTVSGVGPRLALAMLSVLTPDAVSAALRAGDLATLTKIPGVGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K S D++ + + ALV LG+ QAT A Sbjct: 120 AERLVLELKDKVGMPSGSPGADVTP-----SAASLGDAKRDQVAEALVGLGWSAKQATDA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V SV A + ++R+ALR + Sbjct: 175 VASVSAAADPEASVAALLRMALREL 199 >gi|126700422|ref|YP_001089319.1| Holliday junction DNA helicase RuvA [Clostridium difficile 630] Length = 203 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 54/202 (26%), Positives = 98/202 (48%), Gaps = 11/202 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +E +Y D ++++ G+ Y I T+ L ++G+ ++ + +R+D + L Sbjct: 4 MYSYIKGTVEEIYIDSIVVENNGIGYKINVSSNTIMNL-QVGEATKIYTKLIVREDDMSL 62 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF+S + + F LL SV +G +VA+ +LS + +L I+ ++ +++ PG+ K Sbjct: 63 CGFVSREELKMFELLTSVSKIGPKVALSILSFASPAQLGAYILSEDIGKLSKAPGVGKKT 122 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + + + ++ ALV LGY ++ A Sbjct: 123 AERIVLELKDKVDKNNIEFEPTLLSQKPTLIS-------QDESVDALVALGYTLSESKEA 175 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 V K + + II+ AL Sbjct: 176 VQKCKK---DGMNTEAIIKKAL 194 >gi|51473576|ref|YP_067333.1| Holliday junction DNA helicase motor protein [Rickettsia typhi str. Wilmington] gi|81390134|sp|Q68WZ1|RUVA_RICTY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|51459888|gb|AAU03851.1| Holliday junction DNA helicase RuvA [Rickettsia typhi str. Wilmington] Length = 200 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 73/203 (35%), Positives = 114/203 (56%), Gaps = 9/203 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G I+ +DYV+IDV GV Y++Y TL+ L + G F LF+ETH+R++ I L Sbjct: 1 MIGKLSGKIDSQCDDYVIIDVNGVGYLVYASGTTLAKLVE-GRFYKLFIETHVREEHIHL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ +F LLQSV G+G ++A+ +LS +T T++ +I + + I G+ K+ Sbjct: 60 YGFLTLEEKNFFNLLQSVNGIGTKMALSILSNLTPTDIKIAINNDDKNIFKAISGVGDKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 RIM ELKGK + S N I I ALVNLG+ + +A Sbjct: 120 TERIMLELKGKIAKIFSSSAIIKDSSNISSVEI-------NEVIKALVNLGFTRFEAQNT 172 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 V ++ + I ++I+ AL+ Sbjct: 173 VQGIITQNTKI-SIDELIKTALK 194 >gi|269956459|ref|YP_003326248.1| Holliday junction DNA helicase RuvA [Xylanimonas cellulosilytica DSM 15894] gi|269305140|gb|ACZ30690.1| Holliday junction DNA helicase RuvA [Xylanimonas cellulosilytica DSM 15894] Length = 207 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 64/209 (30%), Positives = 97/209 (46%), Gaps = 11/209 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + D +IDV GV Y+++ TL+ L + G+ LF +R++ + L Sbjct: 1 MIASLTGVVEHVSLDRAVIDVGGVGYLVHATPGTLAGL-RTGERARLFTTMVVREESMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 + F D +R F QSV GVG R+A+ VL+ T + ++ Q+ K + ++PGI K+ Sbjct: 60 YAFTDDDERALFETAQSVSGVGPRIALAVLAVHTPDAVRRAVHTQDVKALTRVPGIGPKV 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL GK A + + ALV LGY A A Sbjct: 120 AQRILLELGGKLG------APTGDGAAGSGATAGTGGDQRGKVVEALVGLGYPAKTADDA 173 Query: 181 VVSVLKKEKN----IADDSQIIRLALRAI 205 V VL AD + +R LR + Sbjct: 174 VARVLADGGTETVADADVAATLRATLRMM 202 >gi|224476739|ref|YP_002634345.1| Holliday junction DNA helicase RuvA [Staphylococcus carnosus subsp. carnosus TM300] gi|254767387|sp|B9DNE5|RUVA_STACT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|222421346|emb|CAL28160.1| holliday junction DNA helicase [Staphylococcus carnosus subsp. carnosus TM300] Length = 201 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 92/205 (44%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + L+ +V+++ GV Y I P + T++ +R+D L Sbjct: 1 MYAYIKGKLSQLFPTHVVVETNGVGYEIQTP-NSYRFQQYYQQEVTIYTSLVVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+S+ ++ F+ L V G+G + A+ +L+ T E+ I +N + + PGI K Sbjct: 60 YGFMSEEEKGMFLSLNKVTGIGPKSALAILAASTPNEVKIGIENENETYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + + +N E + A+ AL LGY + + Sbjct: 120 ARQIILDLKGKVQ---ITEENPETLLNFEGSESNQTSPILDEALLALEALGYSKRELNKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + + ++ L+ + Sbjct: 177 EKKLQAE--SYTSVDEAVKAGLKIL 199 >gi|115380771|ref|ZP_01467652.1| holliday junction DNA helicase RuvA [Stigmatella aurantiaca DW4/3-1] gi|310823011|ref|YP_003955369.1| holliday junction ATP-dependent DNA helicase ruva [Stigmatella aurantiaca DW4/3-1] gi|115362222|gb|EAU61576.1| holliday junction DNA helicase RuvA [Stigmatella aurantiaca DW4/3-1] gi|309396083|gb|ADO73542.1| Holliday junction ATP-dependent DNA helicase RuvA [Stigmatella aurantiaca DW4/3-1] Length = 203 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 96/205 (46%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +IDV GV Y + TL L G + V T +R+D L Sbjct: 1 MIAALRGTVAEKDLEEAIIDVAGVGYRVAFSTLTLGKLPAEGQPVHVRVRTVVREDAFEL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLS + + F+LL SV VG R+A+ VLS + EL ++ + +I G+ K Sbjct: 61 FGFLSKAEEEMFLLLTSVSHVGPRLALMVLSGMEVAELAVALGKGEIARLTKIHGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K L + V K + + + +SAL+NLGY QA A Sbjct: 121 AERLVLELREKVKELH------LEAVAKGASSVSVPAGPKADLVSALLNLGYKAPQAEKA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 ++ A + R AL+ + Sbjct: 175 AELAGERLGPEAAFQALFREALKVL 199 >gi|297616928|ref|YP_003702087.1| Holliday junction DNA helicase RuvA [Syntrophothermus lipocalidus DSM 12680] gi|297144765|gb|ADI01522.1| Holliday junction DNA helicase RuvA [Syntrophothermus lipocalidus DSM 12680] Length = 201 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 54/204 (26%), Positives = 96/204 (47%), Gaps = 10/204 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + D V +DV GV + + P R L+ + IG L+ +++ R+ Sbjct: 1 MIAFLRGILVDTGTDCVYLDVNGVGFEVTVPPRVLNRVTCIGQEVFLYTYLQTLENEFRI 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + +RQ F L S+ G+GA+ +G++S +T EL +++ Q+ K + +PGI K Sbjct: 61 YGFLDEDERQLFRTLLSIPGLGAKTCLGIVSSMTTEELYRAVLAQDEKSLTSVPGIGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K + + S + ISAL LG+ + Sbjct: 121 AQRLIFELQNKWPKTDLIATTASENL----------RSSWTDTISALETLGFKSSELIPI 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + + K + + +R LR Sbjct: 171 LSQLQAKNELGEAVEENVRKVLRL 194 >gi|157693178|ref|YP_001487640.1| Holliday junction DNA helicase RuvA [Bacillus pumilus SAFR-032] gi|167012657|sp|A8FFR3|RUVA_BACP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|157681936|gb|ABV63080.1| crossover junction endoribonuclease subunit A [Bacillus pumilus SAFR-032] Length = 201 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 103/205 (50%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG I+ + YV+I+ GV Y +Y P + + K T++ ++++D L Sbjct: 1 MIEFVKGTIDYVCPQYVVIENGGVGYQVYSPNPFIYQINK---QETIYTYHYIKEDAFSL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F L +V G+G + A+ +L+ ++ +I ++ + + PG+ K Sbjct: 58 YGFQTREEKALFTKLLNVTGIGPKGALAILASGDPGAVISAIEREDEAFLIKFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + + ++ + + + A+ AL LGYG + Sbjct: 118 ARQIILDLKGKLADVVPEMIGNLFNHEDH-IQVETQQTALDEALEALSVLGYGDREIKK- 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +LK+EKN+ Q ++ AL+ + Sbjct: 176 VYPLLKEEKNL-TTDQYVKKALQKM 199 >gi|281422792|ref|ZP_06253791.1| holliday junction DNA helicase RuvA [Prevotella copri DSM 18205] gi|281403160|gb|EFB33840.1| holliday junction DNA helicase RuvA [Prevotella copri DSM 18205] Length = 204 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 61/209 (29%), Positives = 101/209 (48%), Gaps = 10/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM----RQD 56 MI I G++ L +++ GV Y + + T + + + L+V + R D Sbjct: 1 MIEYIHGDLTELTPALAVVETAGVGYGLNISLNTYTAI-QGKQEVKLYVHEVLVTGGRDD 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 LFGF + +R+ + LL +V GVG A +LS ++ EL E I N K++ + GI Sbjct: 60 SFTLFGFATKQERELYRLLITVSGVGGNTARMILSSLSPRELCEIISTGNDKMLKTVKGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 +K A RI+ +LK K +SL + S N + A+SAL LG+ Sbjct: 120 GLKTAQRIIIDLKDKIVSLGIADELPASGGN----VVMVNNDVKDEAVSALTMLGFSPAP 175 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + VV +LK + ++ Q+++LAL+ I Sbjct: 176 SAKVVVDILKAQPDLP-VEQVVKLALKQI 203 >gi|148653226|ref|YP_001280319.1| Holliday junction DNA helicase RuvA [Psychrobacter sp. PRwf-1] gi|172048524|sp|A5WFC8|RUVA_PSYWF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|148572310|gb|ABQ94369.1| Holliday junction DNA helicase subunit RuvA [Psychrobacter sp. PRwf-1] Length = 210 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 61/209 (29%), Positives = 102/209 (48%), Gaps = 4/209 (1%) Query: 1 MIGKIKGNIEGLYED-YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG I+G + L L+ GV Y + P+ L ++ +L+ H+R+D Sbjct: 1 MIGLIEGRVCHLSAPVACLMTASGVGYEVELPLPDFCQL-QLEAMASLWTHLHVREDAQL 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL +R F L V GVGA++A+ ++S +ATEL I +N + ++PGI K Sbjct: 60 LYGFLHPTERDVFRQLIRVNGVGAKMALAMMSTFSATELKHCIDTENDAALTRVPGIGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKGK + S + + S SAL++LGY +A Sbjct: 120 TAQRLLIELKGKFDHIQSDMSLLTEVEQQIGIAANSEGVILAEVESALISLGYRDKEAQQ 179 Query: 180 AVVSVLKKEKN--IADDSQIIRLALRAIS 206 A+ + + + + D +++L L+ +S Sbjct: 180 AIKAARETDAGQQLVDTQSLLKLTLKQLS 208 >gi|229825022|ref|ZP_04451091.1| hypothetical protein GCWU000182_00372 [Abiotrophia defectiva ATCC 49176] gi|229790769|gb|EEP26883.1| hypothetical protein GCWU000182_00372 [Abiotrophia defectiva ATCC 49176] Length = 204 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 102/205 (49%), Gaps = 2/205 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG +EG+ + V+IDV G+ P ++ L KI + L H+R+D ++L Sbjct: 1 MIASVKGKLEGVTTESVIIDVNGLGVEAIVPTTVINLLPKIDENIKLHTYLHVREDVMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL D +F LL +V G+G + A+ +LS + L +I+ +++K I + GI K Sbjct: 61 YGFLEKEDLDFFKLLITVNGIGPKAAIAILSSMPTDILTFAILSEDTKTIQKAQGIGAKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK K + + + I A+ L LGY Q +A A Sbjct: 121 AKKLVLELKDKVGIIKTPQNTGSEIYDNAALTIGINSEIKDEAVQVLTALGYSQTEAVKA 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +V + ++++L+L+ + Sbjct: 181 ISTV--EMYEEMTSEELVKLSLKNL 203 >gi|237802930|ref|YP_002888124.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis B/Jali20/OT] gi|237804852|ref|YP_002889006.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis B/TZ1A828/OT] gi|231273152|emb|CAX10065.1| holliday junction DNA helicase [Chlamydia trachomatis B/TZ1A828/OT] gi|231274164|emb|CAX10958.1| holliday junction DNA helicase [Chlamydia trachomatis B/Jali20/OT] Length = 200 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 98/205 (47%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIR 59 M IKG + + E YV+I+ G+ Y I R L + ++V + +R+ + Sbjct: 1 MYEYIKGTLTHINESYVVIESFGIGYAIMLSERFSVDLRAFMHQEVLIYVHSVIRETEHV 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF S +R+ F LL S G+G + + +L+ EL L+N K IA +PGI K Sbjct: 61 LYGFSSRAERECFRLLISFSGIGPKTGLSILNMFPLQELCSIARLENVKAIASVPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A ++M +LK K +L + ++ + S I AL+NLG+ + A Sbjct: 121 TAEKLMVDLKQKLPTLMPLYLEEP------VVPSSTANSSFKEGIGALMNLGFSRLAADR 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + +K+ A ++++ +ALR Sbjct: 175 MMTEAVKELSEEASVAELLPIALRK 199 >gi|88808434|ref|ZP_01123944.1| putative holliday junction DNA helicase RuvA [Synechococcus sp. WH 7805] gi|88787422|gb|EAR18579.1| putative holliday junction DNA helicase RuvA [Synechococcus sp. WH 7805] Length = 215 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 55/213 (25%), Positives = 91/213 (42%), Gaps = 8/213 (3%) Query: 1 MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MIG ++G +E V+I GV Y + R S G CT +V R+D Sbjct: 1 MIGWLQGERIQSWEQGGRRGVVIACGGVGYEVQLTSRDQSRQMD-GTSCTFWVHQVQRED 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF +R F L V GVG ++A+ +L ELV +I+ + K + Q G+ Sbjct: 60 GSTLYGFCEQQERDLFRTLVGVNGVGPQMALALLDCCRVEELVAAIVDGDLKRLTQAQGV 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQA-HICSMPSFAINAISALVNLGYGQD 175 + A RI EL+ + + + + + +S V++ I + L LGY Sbjct: 120 GKRTAERIAVELRDRLGAWAPLQEPSLSLVDRSDVKEIPLGETSLRELQITLETLGYEDL 179 Query: 176 QATTAVVSVL--KKEKNIADDSQIIRLALRAIS 206 + A+ +V D +R +L+ +S Sbjct: 180 EIRRAMRAVATGTDVPAEDDGDAWLRASLKWLS 212 >gi|300727799|ref|ZP_07061181.1| holliday junction DNA helicase RuvA [Prevotella bryantii B14] gi|299774952|gb|EFI71562.1| holliday junction DNA helicase RuvA [Prevotella bryantii B14] Length = 205 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 59/208 (28%), Positives = 97/208 (46%), Gaps = 7/208 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM---RQDQ 57 MI IKG + L +++ GV Y + + T S + D E + R D Sbjct: 1 MIEYIKGELTELTPALAVVEAAGVGYALNISLNTYSAIQGKKDVKLYVHEALVAGGRDDS 60 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 L+GF + +R+ + LL +V GVGA A +LS ++ EL I N K++ + GI Sbjct: 61 FTLYGFFTKQERELYRLLITVSGVGANTARMILSSLSPVELCTVISSGNDKMLKSVKGIG 120 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 +K A RI+ +LK K ISL + + + A A++AL LG+ + Sbjct: 121 LKTAQRIIVDLKDKIISLGIATELPSNAGH---ATAIINNDVKDEAVAALTMLGFSPAPS 177 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 V ++L ++ Q+++LAL+ I Sbjct: 178 AKVVTAILTDSPDMP-VEQVVKLALKQI 204 >gi|297584758|ref|YP_003700538.1| Holliday junction DNA helicase RuvA [Bacillus selenitireducens MLS10] gi|297143215|gb|ADH99972.1| Holliday junction DNA helicase RuvA [Bacillus selenitireducens MLS10] Length = 208 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 53/210 (25%), Positives = 95/210 (45%), Gaps = 9/210 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +I+G + + + + +DV GV Y+I+C + + T+F H+R+D IRL Sbjct: 1 MIEQIRGTLLYIETETITVDVHGVGYLIHC-GNPYRFQEWMNEELTVFTYQHVREDAIRL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F + V G+G + A+ + + ++V +I ++ K + + PG+ K Sbjct: 60 YGFRFREERKLFEKMLQVSGIGPKGALAIATSGHPGKVVAAIESEDEKFLVKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVV-----QQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 A +++ +LKGK L + Q + S A+ AL LGY Sbjct: 120 ARQMILDLKGKLGELLPDLNDHNEGQKPVNAVMNEREPVSDNPELDEALEALKALGYVDR 179 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + + VL IR AL+ + Sbjct: 180 ELQK-IKPVLS--GESMTTDAYIRRALQEL 206 >gi|284032305|ref|YP_003382236.1| Holliday junction DNA helicase RuvA [Kribbella flavida DSM 17836] gi|283811598|gb|ADB33437.1| Holliday junction DNA helicase RuvA [Kribbella flavida DSM 17836] Length = 199 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 54/207 (26%), Positives = 102/207 (49%), Gaps = 11/207 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D +I+V GV ++C TL+ L + G + +R+D + L Sbjct: 1 MIAFVRGPVAAIGVDSAVIEVGGVGMQVFCHPGTLAGL-RPGQEARVATSMVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D ++ F LL + GVG ++A L+ ++ +L +++ ++ ++ ++PGI K Sbjct: 60 YGFADDDEKSLFELLLTASGVGPKLAQAALAVLSPDQLRQAVASEDLAMLVKVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + S +V + + ++ + LV LG+ A A Sbjct: 120 AQRVVLELKDKIGAPSKMVAG---------RPLQATEAWKDQVQAGLVGLGWSARDAEDA 170 Query: 181 VVSVLK-KEKNIADDSQIIRLALRAIS 206 VV+V + ++R ALR +S Sbjct: 171 VVAVSPLAAEGEPSVPDLLRAALRVLS 197 >gi|282864188|ref|ZP_06273244.1| Holliday junction DNA helicase RuvA [Streptomyces sp. ACTE] gi|282560675|gb|EFB66221.1| Holliday junction DNA helicase RuvA [Streptomyces sp. ACTE] Length = 208 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 55/212 (25%), Positives = 101/212 (47%), Gaps = 13/212 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L + +I+V G+ + C TLS L ++G L +R+D + L Sbjct: 1 MIAFVSGPVAALTPNTAVIEVGGIGMALQCTPGTLSGL-RVGQEARLAASLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ + L ++ + K + + GI K Sbjct: 60 YGFADDDERQVFELLQTASGVGPRLAQAMLATHSPDALRIAVATGDEKALTAVSGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK + + + + ++ S+ +AL+ LGY +A A Sbjct: 120 AQKLLLELKDRLG------EPVGAHIGQQGIGTAVSSSWRDQLQAALIGLGYATREADEA 173 Query: 181 VVSVLKK------EKNIADDSQIIRLALRAIS 206 V +V + + Q++R AL++++ Sbjct: 174 VSAVTPQAEAAVADGAQPPVPQLLRAALQSLN 205 >gi|330444140|ref|YP_004377126.1| Holliday junction DNA helicase RuvA [Chlamydophila pecorum E58] gi|328807250|gb|AEB41423.1| Holliday junction DNA helicase RuvA [Chlamydophila pecorum E58] Length = 207 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 95/205 (46%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 M I+G + + V ++ QGV Y I+ R L ++ +++ + Sbjct: 1 MYDYIRGILICVRSGVVTLECQGVGYSIFVTERWGCDLIAASQKEVLIYTHAVLKETEHT 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF S +R F +L S G+G + A +L+ + +L ++ ++ K ++ IPGI K Sbjct: 61 LYGFCSREERDCFRMLISFSGIGPKFANAILNSLPIKQLCCAVHNEDVKALSSIPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A ++M +LK K S+ + + S + S + + ALV LGY + A Sbjct: 121 TAEKLMLDLKQKLPSVLPLGGGETSPWQPLEL------SHREDGVQALVGLGYSKVMAEH 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + LK+ A ++++ +AL+ Sbjct: 175 MIAEALKELPKGASLTEVLPIALKK 199 >gi|126732347|ref|ZP_01748147.1| Holliday junction DNA helicase motor protein [Sagittula stellata E-37] gi|126707216|gb|EBA06282.1| Holliday junction DNA helicase motor protein [Sagittula stellata E-37] Length = 222 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 73/220 (33%), Positives = 120/220 (54%), Gaps = 15/220 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G I ED+VLIDV+GV Y++YC R L+ LG+ G+F L+ + +R+D ++L Sbjct: 1 MIGRIAGQIVYRGEDHVLIDVRGVGYVVYCTDRVLASLGRPGEFAALYTDLLVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++WF LL SVQGVGA+ ++ +L + A + ++ L + + GI K Sbjct: 61 FGFPTLVEKEWFRLLMSVQGVGAKASLAILGALGADGVSRALALGDWNAVKAAKGIGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS--------------FAINAISA 166 A R++ ELK KA + ++ A + + A+SA Sbjct: 121 AQRVVNELKDKAPMVMAMGVGASPPPPLSDAPDEVVETAARPPAAPPAPVASAQAEALSA 180 Query: 167 LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 L NLGYG +A AV ++ ++ D + +IR AL+ ++ Sbjct: 181 LGNLGYGPGEAAGAVAQAAGEDGSL-DTAGLIRAALKLLA 219 >gi|166154716|ref|YP_001654834.1| Holliday junction DNA helicase motor protein [Chlamydia trachomatis 434/Bu] gi|166155591|ref|YP_001653846.1| Holliday junction DNA helicase motor protein [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335990|ref|ZP_07224234.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis L2tet1] gi|229560018|sp|B0B875|RUVA_CHLT2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560020|sp|B0BCE0|RUVA_CHLTB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|165930704|emb|CAP04201.1| holliday junction DNA helicase [Chlamydia trachomatis 434/Bu] gi|165931579|emb|CAP07155.1| holliday junction DNA helicase [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 200 Score = 146 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 98/205 (47%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIR 59 M IKG + + YV+I+ G+ Y I R L L + ++V + +R+ + Sbjct: 1 MYEYIKGTLTHIDGSYVVIESFGIGYAIMLSERFLVDLRAFMHQEVLIYVHSVIRETEHV 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF S +R+ F LL S G+G + + +L+ EL L+N K IA +PGI K Sbjct: 61 LYGFSSRAERECFRLLISFSGIGPKTGLSILNMFPLQELCSIARLENVKAIASVPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A ++M +LK K +L + ++ + S I AL+NLG+ + A Sbjct: 121 TAEKLMVDLKQKLPTLMPLYLEEP------VVPSSTANSSFKEGIGALMNLGFSRLAADR 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + +K+ A ++++ +ALR Sbjct: 175 MMTEAVKELSEEASVAELLPIALRK 199 >gi|254976401|ref|ZP_05272873.1| Holliday junction DNA helicase RuvA [Clostridium difficile QCD-66c26] gi|255093787|ref|ZP_05323265.1| Holliday junction DNA helicase RuvA [Clostridium difficile CIP 107932] gi|255315538|ref|ZP_05357121.1| Holliday junction DNA helicase RuvA [Clostridium difficile QCD-76w55] gi|255518201|ref|ZP_05385877.1| Holliday junction DNA helicase RuvA [Clostridium difficile QCD-97b34] gi|255651317|ref|ZP_05398219.1| Holliday junction DNA helicase RuvA [Clostridium difficile QCD-37x79] gi|260684381|ref|YP_003215666.1| Holliday junction DNA helicase RuvA [Clostridium difficile CD196] gi|260688040|ref|YP_003219174.1| Holliday junction DNA helicase RuvA [Clostridium difficile R20291] gi|306521149|ref|ZP_07407496.1| Holliday junction DNA helicase RuvA [Clostridium difficile QCD-32g58] gi|260210544|emb|CBA65075.1| holliday junction DNA helicase [Clostridium difficile CD196] gi|260214057|emb|CBE06222.1| holliday junction DNA helicase [Clostridium difficile R20291] Length = 200 Score = 146 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 54/202 (26%), Positives = 99/202 (49%), Gaps = 11/202 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +E +Y D ++++ G+ Y I T+ L ++G+ ++ + +R+D + L Sbjct: 1 MYSYIKGTVEEIYIDSIVVENNGIGYKINVSSNTIMNL-QVGEATKIYTKLIVREDDMSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF+S + + F LL SV +G +VA+ +LS ++ +L I+ ++ +++ PG+ K Sbjct: 60 CGFVSREELKMFELLTSVSKIGPKVALSILSFASSAQLGAYILSEDIGKLSKAPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + + + ++ ALV LGY ++ A Sbjct: 120 AERIVLELKDKVDKNNIEFEPTLLSQKPTLIS-------QDESVDALVALGYTLSESKEA 172 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 V K + + II+ AL Sbjct: 173 VQKCKK---DGMNTEAIIKKAL 191 >gi|282892421|ref|ZP_06300771.1| hypothetical protein pah_c253o048 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281497823|gb|EFB40184.1| hypothetical protein pah_c253o048 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 200 Score = 146 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 96/205 (46%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + +I+ G+ Y I+ P T L +IG L+V +R+ L Sbjct: 1 MYDYIKGMLISSSPTCAVIETSGIGYKIFIPTSTFGKLAQIGQNVQLYVSFVIREQSQTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R+ F +L +V G+G + A+ ++ + +T L +I Q+ ++++PG+ K Sbjct: 61 YGFFSAEERELFEILLAVSGIGPKTAIALIGHLPSTLLSAAIQGQDITTLSKVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + + +A++AL +LGY Q A A Sbjct: 121 AERLIVELKDKLK-----IGVHPAAELVTATPFSEKSQTITDALNALTHLGYNQAIAKQA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + LK+ D + +I L+ I Sbjct: 176 IQKTLKEHSTDIDLATLITSTLKHI 200 >gi|15835402|ref|NP_297161.1| Holliday junction DNA helicase motor protein [Chlamydia muridarum Nigg] gi|270285581|ref|ZP_06194975.1| Holliday junction DNA helicase RuvA [Chlamydia muridarum Nigg] gi|270289591|ref|ZP_06195893.1| Holliday junction DNA helicase RuvA [Chlamydia muridarum Weiss] gi|301336977|ref|ZP_07225179.1| Holliday junction DNA helicase RuvA [Chlamydia muridarum MopnTet14] gi|13431873|sp|Q9PJP0|RUVA_CHLMU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|7190816|gb|AAF39591.1| Holliday junction DNA helicase RuvA [Chlamydia muridarum Nigg] Length = 200 Score = 146 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKI-GDFCTLFVETHMRQDQIR 59 M IKG + E YV+I+ G+ Y I R L L ++ ++V + +R+ + Sbjct: 1 MYEYIKGKLTHTDEAYVVIESFGIGYSIMLSERFLVDLRELMHQEVLIYVHSVIRETEHS 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF S +R+ F LL S G+G + + +L+ EL L+N K IA +PGI K Sbjct: 61 LYGFSSRAERECFRLLISFSGIGPKTGLAILNMFPLQELCSVARLENVKAIASVPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A ++M +LK K +L + ++ + S + I AL+NLG+ + A Sbjct: 121 TAEKLMVDLKQKLPALMPLYLEEPVVAS------SSTTTSFKEGIGALMNLGFSRLAADR 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + +K+ A ++++ +ALR Sbjct: 175 MMTEAVKELSEDASVAELLPVALRK 199 >gi|71065275|ref|YP_264002.1| Holliday junction DNA helicase RuvA [Psychrobacter arcticus 273-4] gi|90135656|sp|Q4FTU0|RUVA_PSYA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|71038260|gb|AAZ18568.1| Holliday junction DNA helicase subunit RuvA [Psychrobacter arcticus 273-4] Length = 207 Score = 146 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 102/205 (49%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGL-YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG I G ++ L ++ G+ Y I P+ + L ++ + +++ H+R+D Sbjct: 1 MIGLISGQVQYLMAPTACVMTTSGIGYDIELPLPSFCQL-RLNEQASIWTHFHVREDAQL 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF+ +R F L + GVGA++A+ +LS ++A EL + ++ + +IPGI K Sbjct: 60 LYGFIDRKERDVFRQLIKINGVGAKMALAMLSAMSAAELKMHVEQESETALTRIPGIGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELK K ++ + + A I + S AL++LGY + +A Sbjct: 120 TAQRLLIELKDKLKNIEVDNSNLEFAI--QPAPISAEDSIIAEVEGALMSLGYKEKEAQQ 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 A+ + + AD +++ L+ Sbjct: 178 AIKAAKSNGETFADTQSLLKATLQQ 202 >gi|315498698|ref|YP_004087502.1| holliday junction DNA helicase ruva [Asticcacaulis excentricus CB 48] gi|315416710|gb|ADU13351.1| Holliday junction DNA helicase RuvA [Asticcacaulis excentricus CB 48] Length = 205 Score = 146 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 67/205 (32%), Positives = 116/205 (56%), Gaps = 2/205 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + + +D +I+V G+ YI+ C +RTL+ L G L +E+ R+D RL Sbjct: 1 MIGRLRGILLEIEDDEAVIEVMGLGYIVKCGVRTLANLPANGQEAILHIESQTREDGTRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS +R+ F L +VQGVG + A+ VL +T EL ++ ++ + + G+ K+ Sbjct: 61 YGFLSKDERKTFQQLLTVQGVGPKAALSVLDILTPHELAIAVAHEDKTKVNKANGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELKGKA+++ V A + S +++AL+ LG + Q+ A Sbjct: 121 AQRIVIELKGKALAIGEAFVPVAPGVVLASASSAASRS--GESVAALMGLGIPEAQSRQA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + +K+ A+ + +IR +L+ I Sbjct: 179 VEAAVKELGPEAELAAVIRASLKLI 203 >gi|93005514|ref|YP_579951.1| Holliday junction DNA helicase RuvA [Psychrobacter cryohalolentis K5] gi|123386742|sp|Q1QCY6|RUVA_PSYCK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|92393192|gb|ABE74467.1| Holliday junction DNA helicase subunit RuvA [Psychrobacter cryohalolentis K5] Length = 207 Score = 146 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 101/205 (49%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGL-YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG I G ++ L ++ GV Y I P+ + L ++ + +++ H+R+D Sbjct: 1 MIGLINGQVQYLMAPTACVMTTSGVGYDIELPLPSFCQL-RLNEQASIWTHFHVREDAQL 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF+ +R F L + GVGA++A+ +LS ++A EL + + + +IPGI K Sbjct: 60 LYGFIDRKERDVFRQLIKINGVGAKMALAMLSAMSAAELKMHVEQDSEDALTRIPGIGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELK K ++ + + A I + S AL++LGY + +A Sbjct: 120 TAQRLLIELKDKLKNIEVDSSHLEFAM--QPAPISAEGSIIAEVEGALISLGYKEREAQQ 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 A+ + + AD +++ L+ Sbjct: 178 AIKAAKSNGETFADTQSLLKATLQQ 202 >gi|38233961|ref|NP_939728.1| Holliday junction DNA helicase motor protein [Corynebacterium diphtheriae NCTC 13129] gi|81564836|sp|Q6NGX4|RUVA_CORDI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|38200223|emb|CAE49907.1| holliday junction DNA-helicase [Corynebacterium diphtheriae] Length = 203 Score = 146 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 99/205 (48%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G +E + +I+ GV Y + TL L + G+ + +R++ L Sbjct: 1 MIVSLRGTVESIGLGSAVIECNGVGYEVLAAPTTLGRLTR-GEQARVLTTMVVREESQTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D R+ F+LLQSV G+G ++A+ S T ++ I ++K + +IPG+ ++ Sbjct: 60 YGFTDDASRRMFVLLQSVSGLGPKLALAAQSVFTTEDIARHIAGGDAKALQKIPGVGKRM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + + + + Q I + + ALV LG+ + A Sbjct: 120 AERMIVDLKDKVVGFNDGIP----AAAQPQLSIAVDQAVQEQVLEALVGLGFSEKIALPV 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VL+ + SQ +R AL + Sbjct: 176 LSRVLRDSPEL-SKSQALRAALSEL 199 >gi|78357366|ref|YP_388815.1| Holliday junction DNA helicase RuvA [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|90134880|sp|Q30YX6|RUVA_DESDG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|78219771|gb|ABB39120.1| Holliday junction DNA helicase subunit RuvA [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 201 Score = 146 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 52/196 (26%), Positives = 95/196 (48%), Gaps = 9/196 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I+G + + E ++ GV Y ++ P L+ L + G + ++ T +R+D + Sbjct: 1 MIAYIEGRVAEVTEQSCVVVTQGGVGYEVHLPSHLLARLPEQGAAVSFYIHTVVREDALE 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +RQ F++L S+ VGA+ A+ VLS +L + + + ++ GI K Sbjct: 61 LYGFSGWDERQTFLVLISISKVGAKTALAVLSLYRPDDLRRIVADDDVTALTRVSGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A I+ ELK K S ++ S +A+ AL NLGY +++A Sbjct: 121 SAQHILLELKYKLKVESLPASAGLAA--------GVPGSVLRDAVQALGNLGYAEEEAAP 172 Query: 180 AVVSVLKKEKNIADDS 195 + ++LK++ ++ Sbjct: 173 VLKNILKQDPDLDVSE 188 >gi|76789238|ref|YP_328324.1| Holliday junction DNA helicase motor protein [Chlamydia trachomatis A/HAR-13] gi|90134759|sp|Q3KLJ6|RUVA_CHLTA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|76167768|gb|AAX50776.1| RuvA [Chlamydia trachomatis A/HAR-13] Length = 200 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 98/205 (47%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIR 59 M IKG + + E YV+I+ G+ Y I R L + ++V + +R+ + Sbjct: 1 MYEYIKGTLTHINESYVVIESFGIGYAIMLSERFSVDLRAFMHQEVLIYVHSVIRETEHV 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF S +++ F LL S G+G + + +L+ EL L+N K IA +PGI K Sbjct: 61 LYGFSSRAEKECFRLLISFSGIGPKTGLSILNMFPLQELCSIARLENVKAIASVPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A ++M +LK K +L + ++ + S I AL+NLG+ + A Sbjct: 121 TAEKLMVDLKQKLPTLMPLYLEEP------VVPSSTANSSFKEGIGALMNLGFSRLAADR 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + +K+ A ++++ +ALR Sbjct: 175 MMTEAVKELSEEASVAELLPIALRK 199 >gi|288803240|ref|ZP_06408674.1| holliday junction DNA helicase RuvA [Prevotella melaninogenica D18] gi|288334281|gb|EFC72722.1| holliday junction DNA helicase RuvA [Prevotella melaninogenica D18] Length = 205 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 57/209 (27%), Positives = 99/209 (47%), Gaps = 9/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMR----QD 56 MI I+G + L +++ GV Y + + T S + + L+V + D Sbjct: 1 MIEYIRGELADLTPALAVVEAHGVGYALNISLNTYSAI-QGKTAVKLYVHEAIMTGGRDD 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF + +R + LL +V GVGA A +LS +T EL I + K++ + GI Sbjct: 60 NYTLYGFANKQERSLYRLLITVSGVGANTARMILSSLTPAELCNVIANGDEKMLKTVKGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 ++ A RI+ +LK K + D V+ + + A+SAL LG+ Sbjct: 120 GLRTAQRIIVDLKDKIMQ---SGIADELHVSSQPNTPTVNTAIKDEAVSALTMLGFSPAP 176 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + VVS+L ++ ++ Q+++LAL+ I Sbjct: 177 SAKVVVSILAEQPDLP-VEQVVKLALKMI 204 >gi|325963419|ref|YP_004241325.1| Holliday junction DNA helicase subunit RuvA [Arthrobacter phenanthrenivorans Sphe3] gi|323469506|gb|ADX73191.1| Holliday junction DNA helicase subunit RuvA [Arthrobacter phenanthrenivorans Sphe3] Length = 214 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 58/208 (27%), Positives = 102/208 (49%), Gaps = 12/208 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +ID+ G + +TLS L + G+ LF +R+D + L Sbjct: 1 MISFLRGTVAHVGLSTAVIDLNGAGMSVNATPQTLSGL-RTGEEGQLFTSLIVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF SD +R+ F +L SV GVG R+A+ VL+ + + +SK ++PGI K+ Sbjct: 60 FGFASDDEREVFDVLLSVSGVGPRLALAVLAVHDPEAIRVAAHTGDSKTFTKVPGIGPKV 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL GK + A + S+ ++A+ +LG+ + A+ + Sbjct: 120 AGRIVLELAGKLV--------PQGTAGTAAAPTAAEASWKPQVVAAMTSLGWSEKDASAS 171 Query: 181 VVSVLKKEKNIA---DDSQIIRLALRAI 205 + L E ++ + +I+R LR + Sbjct: 172 IDKALADEPEVSFRGNVPEILRTTLRWL 199 >gi|223044126|ref|ZP_03614165.1| holliday junction DNA helicase RuvA [Staphylococcus capitis SK14] gi|222442520|gb|EEE48626.1| holliday junction DNA helicase RuvA [Staphylococcus capitis SK14] Length = 200 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 100/205 (48%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + L+ +V+++ G+ Y I P + + +F +R+D L Sbjct: 1 MYAYVKGTLTQLFPTHVVVETSGIGYEIQTP-NSYRFQKYLNQDVQIFTSLIVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+S+ ++ F L V G+G + A+ +L+ + E+ +I +N + Q PGI K Sbjct: 60 YGFISEEEKDMFHSLIKVTGIGPKSALAILAASSPNEVKRAIENENDAYLTQFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + ++D + + + A+ AL LGY + + + Sbjct: 120 ARQIVLDLKGKVT----ITEEDSESLLQVDVNNNEQSQVVKEAMLALEALGYSKRELSK- 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V VL K+ +++ + ++L L+ + Sbjct: 175 VEKVLNKQ-SVSSVDEAVKLGLQTL 198 >gi|320534404|ref|ZP_08034887.1| Holliday junction DNA helicase RuvA [Actinomyces sp. oral taxon 171 str. F0337] gi|320133379|gb|EFW25844.1| Holliday junction DNA helicase RuvA [Actinomyces sp. oral taxon 171 str. F0337] Length = 217 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 55/212 (25%), Positives = 100/212 (47%), Gaps = 8/212 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +I+ GV I TLS L ++G+ + E +R+D + L Sbjct: 1 MIASLRGTVLSVGLTGAVIETGGVGMSIQATPTTLSGL-RVGEETLVHTEMVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L S +GVGA++A+ +L+ T L +I Q+ + ++PG+ K Sbjct: 60 FGFADTDERDSFRTLMSAKGVGAKLALAMLAVHTPNALRRAIASQDVAALTRVPGLGPKG 119 Query: 121 ASRIMTELKGKAISLS----SVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ ++ K ++ + ++ S P + ++ALV LG+ + Sbjct: 120 AQRVILDVADKLGPVTGDDLGAARAASGTAGGQEGAADSGPEPHADVVAALVQLGWNEAS 179 Query: 177 ATTAVVSV---LKKEKNIADDSQIIRLALRAI 205 A AV SV D + ++R +LR + Sbjct: 180 ACQAVSSVTADAAAADQDPDTAALLRASLRWL 211 >gi|218671058|ref|ZP_03520729.1| Holliday junction DNA helicase RuvA [Rhizobium etli GR56] Length = 197 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 94/200 (47%), Positives = 139/200 (69%), Gaps = 3/200 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG I+ + EDYVL+DV GVCY+ YC RTLS LG G+ C LF+ET++R+DQ++L Sbjct: 1 MIGKLKGTIDEIGEDYVLVDVHGVCYVAYCSARTLSKLGSAGEACVLFIETYVREDQLKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF++ L+R+WF LLQSVQGVGA+VA+ VLS +T EL +I LQ+ +++ PG+ K+ Sbjct: 61 FGFMTALEREWFNLLQSVQGVGAKVALAVLSTLTPGELANAIALQDRAAVSRAPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++TELK +A + + + ++ K++ + +A+SAL NLGY +DQA A Sbjct: 121 AMRLVTELKNRAPAFAG---EAINIALKQELGEGVAAAPVADAVSALTNLGYSRDQAANA 177 Query: 181 VVSVLKKEKNIADDSQIIRL 200 V + +K AD +++IRL Sbjct: 178 VAAAMKTAGEGADSAKLIRL 197 >gi|259417974|ref|ZP_05741893.1| holliday junction DNA helicase RuvA [Silicibacter sp. TrichCH4B] gi|259346880|gb|EEW58694.1| holliday junction DNA helicase RuvA [Silicibacter sp. TrichCH4B] Length = 229 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 114/227 (50%), Gaps = 22/227 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G +E D+V+IDV+GV YI+YC RTL+ L +G+ L+ E +R+D ++L Sbjct: 1 MIGKLTGRLEYRAPDHVMIDVRGVGYIVYCSDRTLASLPSVGEAVQLYTELLVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S ++++W LL SVQGVGA+V++ +LS + + +I L + + G+ K Sbjct: 61 FGFTSLVEKEWHRLLTSVQGVGAKVSLAILSALGPEGVSRAIALGDWAAVKAAKGVGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA-------------- 166 A RI+ +LK KA S+ ++ + + P+ A Sbjct: 121 AQRIVLDLKDKAPSVMAMGGTITEALEGPDLEVVVEPASDAPVKPARKAAPKAPTGAAAA 180 Query: 167 -------LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 L NLGY A AV A ++++IR ALR ++ Sbjct: 181 SAGALSALGNLGYSPSDAAGAVAEAAADNPE-AGEAELIRAALRLLA 226 >gi|257866610|ref|ZP_05646263.1| holliday junction DNA helicase RuvA [Enterococcus casseliflavus EC30] gi|257872874|ref|ZP_05652527.1| holliday junction DNA helicase RuvA [Enterococcus casseliflavus EC10] gi|257800568|gb|EEV29596.1| holliday junction DNA helicase RuvA [Enterococcus casseliflavus EC30] gi|257807038|gb|EEV35860.1| holliday junction DNA helicase RuvA [Enterococcus casseliflavus EC10] Length = 196 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 90/205 (43%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + ++ Y++++ G+ Y I S GK+ +++ +R+D L Sbjct: 1 MYEYIIGKVTDIFPAYIVVETHGIGYQIAF-GNPYSFSGKLNQEVKIYLHQVIREDAHSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +Q F+ L SV G+G + A+ +++ T L+ ++ + + + PG+ K Sbjct: 60 YGFATIEGKQLFLKLISVSGIGPKSALAIMANEDHTGLITAVENGDVNYLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK L + + A+ AL LGY + + A Sbjct: 120 AQQMILDLKGKVAELVGEEA---------IVPLSVATTALDEAMEALKALGYSEKEVKKA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + E + +R ALR + Sbjct: 171 EKQLA--ENTTKSTDEYLREALRLM 193 >gi|326575817|gb|EGE25740.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis CO72] Length = 204 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 102/207 (49%), Gaps = 6/207 (2%) Query: 1 MIGKIKGNIEGLYEDYV-LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG I G ++ L ++ GV Y I PI + L IG ++V H+R+D I Sbjct: 1 MIGMISGQVQYLNAPIACILTSNGVGYEIELPIPSFCQL-TIGAQTAVYVHHHVREDAIN 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF+ DR F L + GVGA++A+ +LS ++ E+ +I + ++PGI K Sbjct: 60 LFGFMDRHDRDIFRKLIKINGVGAKMALAMLSTLSVAEIKHAIETDYDAALVRVPGIGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ +LKG+ + M+ + SAL+NLGY + +A Sbjct: 120 TAQRILLDLKGQLNEFGEM--HPMTAEGLFNQPADNSMLIIAEVESALMNLGYKEKEAQV 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ + KN + S +++ ALR +S Sbjct: 178 AIKNAQSDAKN--NTSDLLKAALRQLS 202 >gi|257063440|ref|YP_003143112.1| Holliday junction DNA helicase, RuvA subunit [Slackia heliotrinireducens DSM 20476] gi|256791093|gb|ACV21763.1| Holliday junction DNA helicase, RuvA subunit [Slackia heliotrinireducens DSM 20476] Length = 197 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 96/205 (46%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + G D I+V GV + + P L+ L + G+ + +R+D + L Sbjct: 1 MIAFLNGRVAGHTTDTAFIEVNGVGFAVGMPASDLAKLPERGEEVLVHTYLAVREDAMAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++++F L V GVG +VA+ LS EL +I + K ++ IPG+ K Sbjct: 61 YGFLTQDEKRFFEKLIGVSGVGPKVALAALSVYKPEELANAIAAGDVKAVSMIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKG D + + A AL+++G+ +A A Sbjct: 121 AQRMILELKGSF--------SDENMQSLFDQETAEATRRLEGAREALLSMGFSSAEADLA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ DS +I+ ALR + Sbjct: 173 LKDAPEELH---TDSALIQYALRRL 194 >gi|308234389|ref|ZP_07665126.1| Holliday junction DNA helicase subunit RuvA [Atopobium vaginae DSM 15829] gi|328944205|ref|ZP_08241669.1| crossover junction ATP-dependent DNA helicase RuvA [Atopobium vaginae DSM 15829] gi|327491124|gb|EGF22899.1| crossover junction ATP-dependent DNA helicase RuvA [Atopobium vaginae DSM 15829] Length = 214 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 54/210 (25%), Positives = 98/210 (46%), Gaps = 5/210 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDF-CTLFVETHMRQDQIR 59 MI ++ G + ++ + V++DVQGV Y + T + L G TL V ++++ + Sbjct: 1 MIVQLTGTLVEVFPNSVVLDVQGVGYELGISANTAANLPACGQTAVTLLVRMIVKENAME 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF S +R F L + GVG ++A+ VLS + ++L + ++ +AQ+PG+ K Sbjct: 61 LYGFSSRQERNAFDRLIDISGVGPKLALAVLSTYSLSDLATIALSEDVTRMAQVPGVGKK 120 Query: 120 IASRIMTELKGKAISLSSV-VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ EL + + + S +A SAL+ +G+ + Sbjct: 121 KAQRLLIELADVFAKDAELRILASAEQKTSGAREQAPQHSVLDDAQSALLAMGFTPQEVE 180 Query: 179 TAVVSVLKKEKNI---ADDSQIIRLALRAI 205 A+ KKE N +I AL+ + Sbjct: 181 LALKPYDKKECNDNPSLTAQTVITQALQRL 210 >gi|313901946|ref|ZP_07835363.1| Holliday junction DNA helicase RuvA [Thermaerobacter subterraneus DSM 13965] gi|313467792|gb|EFR63289.1| Holliday junction DNA helicase RuvA [Thermaerobacter subterraneus DSM 13965] Length = 221 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 56/196 (28%), Positives = 99/196 (50%), Gaps = 5/196 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + G + D IDV GV + + +T L +G+ L +R+DQ L Sbjct: 1 MIAFLRGELAGFHGDEAWIDVGGVGFRVAVSRQTQRRLPPVGEPVRLLTRLVVREDQWSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F L +V GVG RVA+ VLS +T +L +++LQ+ ++ ++PG+ K+ Sbjct: 61 YGFATADEQAAFDALVAVSGVGPRVALSVLSVLTPEDLRRAVVLQDPALLTRVPGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP-----SFAINAISALVNLGYGQD 175 A R++TEL+ + + A P S +A++AL LGY + Sbjct: 121 ARRLLTELRDRLGQPLAEDGAAGGPAATGTAGAVPSPGTGEASPRDDALAALEALGYSRA 180 Query: 176 QATTAVVSVLKKEKNI 191 +A A+ +V + + Sbjct: 181 EAEGALAAVAGQVEPG 196 >gi|163840742|ref|YP_001625147.1| Holliday junction DNA helicase RuvA [Renibacterium salmoninarum ATCC 33209] gi|189045763|sp|A9WSE5|RUVA_RENSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|162954218|gb|ABY23733.1| holliday junction DNA helicase [Renibacterium salmoninarum ATCC 33209] Length = 214 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 51/208 (24%), Positives = 96/208 (46%), Gaps = 14/208 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +IDV GV ++ +TL L ++G TL +R+D + L Sbjct: 1 MISFLRGPVAHIGLSAAVIDVGGVGMLVQATPKTLGTL-RLGQESTLTTAMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F +L +V G+G R+ + VL+ + + + + K ++PGI K+ Sbjct: 60 YGFADPDEREVFEILLTVSGIGPRLGLAVLAVLEPETIRVATSTGDGKTFTKVPGIGPKV 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL GK + +V A + ++A+ +LG+ + A + Sbjct: 120 AGRIVLELAGKLVPHGTV----------NGAPASPSAQWKPQVVAAMTSLGWSEKDALAS 169 Query: 181 VVSVLKKEKNIAD---DSQIIRLALRAI 205 V + ++I+R LR + Sbjct: 170 VEKATADSPELISDGNVAEILRTTLRWL 197 >gi|302345821|ref|YP_003814174.1| Holliday junction DNA helicase RuvA [Prevotella melaninogenica ATCC 25845] gi|302149753|gb|ADK96015.1| Holliday junction DNA helicase RuvA [Prevotella melaninogenica ATCC 25845] Length = 205 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 57/209 (27%), Positives = 99/209 (47%), Gaps = 9/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMR----QD 56 MI I+G + L +++ GV Y + + T S + + L+V + D Sbjct: 1 MIEYIRGELADLTPALAVVEAHGVGYALNISLNTYSAI-QGKTAVKLYVHEAIMTGGRDD 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF + +R + LL +V GVGA A +LS +T EL I + K++ + GI Sbjct: 60 NYTLYGFANKQERSLYRLLITVSGVGANTARMILSSLTPAELCNVIANGDEKMLKTVKGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 ++ A RI+ +LK K + D V+ + + A+SAL LG+ Sbjct: 120 GLRTAQRIIVDLKDKIMQ---SGIADELHVSSQPNTPAVNAAIKDEAVSALTMLGFSPAP 176 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + VVS+L ++ ++ Q+++LAL+ I Sbjct: 177 SAKVVVSILTEQPDLP-VEQVVKLALKMI 204 >gi|62147831|emb|CAH63577.1| putative holliday junction DNA helicase RuvA [Chlamydophila abortus S26/3] Length = 222 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 100/205 (48%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQIR 59 M I+G + + ++I+ QG+ + I+ P R L L ++ ++ T +R+ + Sbjct: 16 MYDYIRGVLTYISSSTMVIESQGLGFSIFAPERWLIELSSQLHRELIVYTYTVVRETEHV 75 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + +R+ F +L S GVG + + +L+ + ++L ++ K IA +PGI K Sbjct: 76 LYGFHTRGERECFRMLISFSGVGPKTGLAILNTFSLSQLCSIARAEDIKAIASVPGIGKK 135 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A ++M +LK K L + Q ++ + PS I AL LGY + A Sbjct: 136 TAEKLMVDLKQKLADLLPLDAQILASW------EPAKPSCMEEGIQALAALGYPKSSAER 189 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + + + + A ++I+ +AL+ Sbjct: 190 MIAEAMSELPDHASVAEILPIALKK 214 >gi|150390102|ref|YP_001320151.1| Holliday junction DNA helicase RuvA [Alkaliphilus metalliredigens QYMF] gi|167012654|sp|A6TQM4|RUVA_ALKMQ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|149949964|gb|ABR48492.1| Holliday junction DNA helicase RuvA [Alkaliphilus metalliredigens QYMF] Length = 194 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 96/206 (46%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I D ++++V G+ Y I I + S + KIG TLF +R+D+ L Sbjct: 1 MFEYMKGMIVEAQIDKIIVEVNGIGYRINSSINSASQV-KIGQVSTLFTHFVLREDEAHL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ + F L SV +G +VA G+LS T L I+ +++ IA+ PG+ K Sbjct: 60 YGFVDKEELAMFKKLISVSKIGPKVAAGILSTYTPQRLGAYIVSNDAQAIAKSPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K D S V +Q + AL+ LGY + + A Sbjct: 120 AERMILELKDKI---------DDSQVEYDQNFFNHENKNNNEVVDALMALGYTKHEGEQA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 +V ++IR AL ++ Sbjct: 171 ASAVR---DTSLSTEEMIRKALNWLA 193 >gi|296117790|ref|ZP_06836373.1| holliday junction DNA helicase RuvA [Corynebacterium ammoniagenes DSM 20306] gi|295969021|gb|EFG82263.1| holliday junction DNA helicase RuvA [Corynebacterium ammoniagenes DSM 20306] Length = 211 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 56/209 (26%), Positives = 100/209 (47%), Gaps = 4/209 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + D+ +I+ GV Y +TL+ L + GD + +++D L Sbjct: 1 MIASLSGEVLSIALDHAVIECGGVGYQFLATPKTLATLIR-GDHARVMTSMTVKEDARTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +D DR F LQ+V G+G ++A+ LS + A E+ +I ++K + IPG+ ++ Sbjct: 60 YGFTNDEDRAMFHQLQAVSGLGPKLAIACLSVLDAREIAVAISNGDAKKLQTIPGVGKRM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179 + R+ ELK K + S Q + ++ + ALV LG+ + A Sbjct: 120 SERMALELKDKVNNFIGTPDASDSETTATQTGLPVGSGAIVDTVVEALVGLGFTEKAARP 179 Query: 180 AVVS--VLKKEKNIADDSQIIRLALRAIS 206 V S K + + ++R +L A+S Sbjct: 180 VVESHVAESKTPEKLETATVLRASLSALS 208 >gi|298373760|ref|ZP_06983749.1| holliday junction DNA helicase RuvA [Bacteroidetes oral taxon 274 str. F0058] gi|298274812|gb|EFI16364.1| holliday junction DNA helicase RuvA [Bacteroidetes oral taxon 274 str. F0058] Length = 193 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 96/205 (46%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I L + +++V + Y + + T S L D ++V +R+D L Sbjct: 1 MIDYIKGKIVELSPAHAVVEVSDIGYHVNISLATYSELNG-KDNAKIYVYEAIREDSHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +RQ F+LL SV GVGA A +LS I +L +I N+ ++ + GI K Sbjct: 60 FGFFGRQERQLFLLLISVSGVGANTARVILSSIAIDDLQSAIQTGNAAILKSVKGIGSKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + A A++ALV LG+ Q A A Sbjct: 120 AERIIVDLKDKVSKIEISTVD----------KPVVDNVLADEAVAALVMLGFSQMPAQKA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V++ + Q+I+ +L+ + Sbjct: 170 VRKVIEINPQL-TIEQVIKQSLKLL 193 >gi|255311319|ref|ZP_05353889.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis 6276] gi|255317620|ref|ZP_05358866.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis 6276s] gi|296436034|gb|ADH18208.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis G/9768] gi|296437895|gb|ADH20056.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis G/11074] gi|297140395|gb|ADH97153.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis G/9301] Length = 200 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 97/205 (47%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIR 59 M IKG + + E YV+I+ G+ Y I R L + ++V + +R+ + Sbjct: 1 MYEYIKGTLTHINESYVVIESFGIGYAIMLSERFSVDLRAFMHQEVLIYVHSVIRETEHV 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +R+ F LL S G+G + + +L+ EL L+N K IA +PGI K Sbjct: 61 LYGFSFRAERECFRLLISFSGIGPKTGLSILNMFPLQELCSIARLENVKAIASVPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A ++M +LK K +L + ++ + S I AL+NLG+ + A Sbjct: 121 TAEKLMVDLKQKLPTLMPLYLEEP------VVPSSTANSSFKEGIGALMNLGFSRLAADR 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + +K+ A ++++ +ALR Sbjct: 175 MMTEAVKELSEEASVAELLPIALRK 199 >gi|262202231|ref|YP_003273439.1| Holliday junction DNA helicase RuvA [Gordonia bronchialis DSM 43247] gi|262085578|gb|ACY21546.1| Holliday junction DNA helicase RuvA [Gordonia bronchialis DSM 43247] Length = 197 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 96/205 (46%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +ID GV Y + TLS L + G+ TL +R+D + L Sbjct: 1 MIASVRGPVLEVALDHAVIDCGGVGYRVLATPVTLSRL-RRGEESTLLTSMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F LLQ+V GVG R+AM L+ + L ++ ++K + +PGI ++ Sbjct: 60 YGFTEPDARALFALLQTVTGVGPRLAMATLAVLEPEALRRALAESDTKALTSVPGIGKRV 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K + + + ALV LG+ A A Sbjct: 120 AERLVVELRDKVDR----------PTGESAVGVVAPGGVREQVADALVGLGFTAGPAEKA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +VL + AD S +R +L + Sbjct: 170 VAAVLADHPD-ADASTALRQSLSLL 193 >gi|288924630|ref|ZP_06418567.1| holliday junction DNA helicase RuvA [Prevotella buccae D17] gi|315607515|ref|ZP_07882510.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella buccae ATCC 33574] gi|288338417|gb|EFC76766.1| holliday junction DNA helicase RuvA [Prevotella buccae D17] gi|315250698|gb|EFU30692.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella buccae ATCC 33574] Length = 205 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 62/208 (29%), Positives = 100/208 (48%), Gaps = 7/208 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE---THMRQDQ 57 MI IKG + L +I+ GV Y + + T + + + E T R D Sbjct: 1 MIEYIKGELTELTPALAVIEAAGVGYALNISLNTYTAIQGKKETKLYVHEALTTGGRDDA 60 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 L+GF S +R + LL +V GVGA A +LS ++A EL I N K++ + GI Sbjct: 61 FTLYGFFSKQERSLYRLLITVSGVGANTARMILSAMSAKELCGVISTGNDKMLKSVKGIG 120 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 +K A RI+ +LK K ISL + S + + A+SAL LG+ + Sbjct: 121 LKTAQRIIVDLKDKIISLGIADELPASGG---LPSMPVDNATRDEAVSALTMLGFSPAPS 177 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 VV++L+++ ++A +++ AL+ I Sbjct: 178 QKVVVAILQEQPDMA-VEMVVKEALKRI 204 >gi|257876215|ref|ZP_05655868.1| holliday junction DNA helicase RuvA [Enterococcus casseliflavus EC20] gi|325567287|ref|ZP_08143954.1| crossover junction ATP-dependent DNA helicase RuvA [Enterococcus casseliflavus ATCC 12755] gi|257810381|gb|EEV39201.1| holliday junction DNA helicase RuvA [Enterococcus casseliflavus EC20] gi|325158720|gb|EGC70866.1| crossover junction ATP-dependent DNA helicase RuvA [Enterococcus casseliflavus ATCC 12755] Length = 196 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 89/205 (43%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + ++ Y++++ G+ Y I S GK+ +++ +R+D L Sbjct: 1 MYEYIIGKVTDIFPAYIVVETHGIGYQIAF-GNPYSFSGKLNQEVKIYLHQVIREDAHSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +Q F+ L SV G+G + A+ +++ T L+ ++ + + + PG+ K Sbjct: 60 YGFATIEGKQLFLKLISVSGIGPKSALAIMANEDHTGLITAVENGDVNYLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK L + + A+ AL LGY + + A Sbjct: 120 AQQMILDLKGKVAELVGEEA---------IVPLSVATTALDEAMEALKALGYSEKEVKKA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + +R ALR + Sbjct: 171 EKQLAAN--TTKSTDEYLREALRLM 193 >gi|328955749|ref|YP_004373082.1| Holliday junction DNA helicase subunit RuvA [Coriobacterium glomerans PW2] gi|328456073|gb|AEB07267.1| Holliday junction DNA helicase subunit RuvA [Coriobacterium glomerans PW2] Length = 206 Score = 145 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 99/205 (48%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + LIDV GV Y + T L + G LF +RQD + L Sbjct: 1 MISQLHGTLVDSSPTSALIDVAGVGYELGISGVTAQALPQPGSDVMLFTRLQVRQDALTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L +V +GAR+A+ LS T +++ + +++ +A++PG+ K Sbjct: 61 FGFATREERAMFDRLIAVSSIGARLALATLSTFTVSQIRVIVAQEDAARMAEVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK D S + A S S +A +AL+++G+ + A Sbjct: 121 AQRLILELKSTLEKGDLPGCADASRES--GAMSPSAGSAVDDARAALLSMGFSPQEVAVA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ +E+ + ++ ALR + Sbjct: 179 LETLGDEEREMR-VESVLAGALRRL 202 >gi|229495868|ref|ZP_04389594.1| holliday junction DNA helicase RuvA [Porphyromonas endodontalis ATCC 35406] gi|229317181|gb|EEN83088.1| holliday junction DNA helicase RuvA [Porphyromonas endodontalis ATCC 35406] Length = 204 Score = 145 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 97/205 (47%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G I+ L L+DV GV Y I + + L L++ +R+D L Sbjct: 6 MIAYIEGKIDRLSPTNALLDVGGVGYDINITLTDYTALQGKPS-ARLWITEIIREDAHLL 64 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ + R +F L SV GVG A +LS T +L I ++ + GI +K Sbjct: 65 YGFVREESRAFFEKLCSVSGVGPSTARLILSSYTPNDLASIIGNGAVDLLKNVKGIGLKT 124 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LKGK + D+S E + + + + A AL LG+ + A Sbjct: 125 AQRIVVDLKGKI----DLSAYDLSEGMPEGGNAPEVAAVSDEAQRALKMLGFPEAAIRKA 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +VL + ++ ++I+ AL+ + Sbjct: 181 VKAVLGADAHLP-VEEVIKQALKRL 204 >gi|260591290|ref|ZP_05856748.1| holliday junction DNA helicase RuvA [Prevotella veroralis F0319] gi|260536656|gb|EEX19273.1| holliday junction DNA helicase RuvA [Prevotella veroralis F0319] Length = 205 Score = 145 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 58/209 (27%), Positives = 97/209 (46%), Gaps = 9/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMR----QD 56 MI IKG + L +++ GV Y + + T S + + L+V + D Sbjct: 1 MIEYIKGELAELTPAMAVVEAHGVGYALNISLNTYSAI-QGKTAVKLYVHEAIMTGGRDD 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF + +R + LL +V GVGA A +LS +T EL I + K++ + GI Sbjct: 60 NYTLYGFANKQERALYRLLITVSGVGANTARMILSSLTPAELCNVIANGDEKMLKTVKGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 ++ A RI+ +LK K + D V+ A+SAL LG+ Sbjct: 120 GLRTAQRIIVDLKDKIMQ---SGIADELHVSNTPGTPAVDAGIKDEAVSALTMLGFSPAP 176 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + VVS+L ++ ++ Q+++LAL+ I Sbjct: 177 SAKVVVSILTEQPDLP-VEQVVKLALKMI 204 >gi|320334037|ref|YP_004170748.1| Holliday junction ATP-dependent DNA helicase ruvA [Deinococcus maricopensis DSM 21211] gi|319755326|gb|ADV67083.1| Holliday junction ATP-dependent DNA helicase ruvA [Deinococcus maricopensis DSM 21211] Length = 200 Score = 145 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 52/204 (25%), Positives = 96/204 (47%), Gaps = 9/204 (4%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 I + G + + + +I GV Y + CP TL+ L ++ D L +R+D L+ Sbjct: 5 IAYLTGTVRDVRDTSAVIVAGGVGYEVLCPAPTLAKL-RVNDTAELHTRMVVREDAWTLY 63 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF + F LL SV GVG ++ + +LS + + I+ +SK++A + G+ K A Sbjct: 64 GFQDQDSIRLFDLLTSVTGVGPKLGLALLSAMPPHVIAGGILGSDSKLLASVSGVGKKTA 123 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 R++ EL+ K + ++ + + +A+ AL+ LG+ + Q + Sbjct: 124 ERLVLELQNKV-------PEHLAAASGRTTAPVVNSTVGQDAVEALLALGFREAQVRAVI 176 Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205 +L + N A Q+IR +L + Sbjct: 177 SELLSADPN-ATADQLIRKSLGRL 199 >gi|89898693|ref|YP_515803.1| Holliday junction DNA helicase RuvA [Chlamydophila felis Fe/C-56] gi|123749524|sp|Q252Y0|RUVA_CHLFF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|89332065|dbj|BAE81658.1| holliday junction DNA helicase [Chlamydophila felis Fe/C-56] Length = 207 Score = 145 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 51/205 (24%), Positives = 97/205 (47%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKI-GDFCTLFVETHMRQDQIR 59 M I+G + + ++I+ QG+ + I R L L + ++ T +R+ + Sbjct: 1 MYDYIRGILTYMSSGTMVIECQGLGFSICASDRWLMELAGLLHREVIVYTYTVVRETEHV 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF S +R+ F +L S GVG + + +L+ ++L ++ K +A +PGI K Sbjct: 61 LYGFRSRGERECFRMLISFSGVGPKTGLAILNTFALSKLCSIARAEDVKALASVPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A ++M +LK K L + Q ++ + PS + I AL LGY + A Sbjct: 121 TAEKLMVDLKQKLPELLPLDSQTLTSW------KPAKPSCMEDGIQALAALGYPKSSAER 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + + + + A ++I+ +AL+ Sbjct: 175 MIAEAITELPDNASLAEILPIALKK 199 >gi|327314021|ref|YP_004329458.1| Holliday junction DNA helicase RuvA [Prevotella denticola F0289] gi|326944672|gb|AEA20557.1| Holliday junction DNA helicase RuvA [Prevotella denticola F0289] Length = 205 Score = 145 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 59/209 (28%), Positives = 99/209 (47%), Gaps = 9/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMR----QD 56 MI I+G + L +++ QGV Y + + T S + L+V + D Sbjct: 1 MIEYIRGELADLTPALAVVEAQGVGYALNISLNTYSAIQGR-TPVKLYVHEAIMTGGRDD 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF S +R + LL +V GVGA +A +LS +T EL I + K++ + GI Sbjct: 60 SYTLYGFASRQERSLYRLLITVSGVGANIARMILSSLTPAELCNVIANGDEKMLKTVRGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 ++ A RI+ +LK K + D V+ + + A+SAL LG+ Sbjct: 120 GLRTAQRIIVDLKDKIMQSGI---ADELHVSSQPGTPAVNTAIKDEAVSALTMLGFSPAP 176 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + VVS+L + ++ Q+++LAL+ I Sbjct: 177 SAKVVVSILTDQPDLP-VEQVVKLALKMI 204 >gi|300781059|ref|ZP_07090913.1| crossover junction ATP-dependent DNA helicase RuvA [Corynebacterium genitalium ATCC 33030] gi|300532766|gb|EFK53827.1| crossover junction ATP-dependent DNA helicase RuvA [Corynebacterium genitalium ATCC 33030] Length = 207 Score = 145 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 100/206 (48%), Gaps = 3/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + D+ +I+ GV Y P TL+ L + G+ + +R+D + L Sbjct: 1 MIDSLNGEVISIGLDHAVIECAGVGYRFLAPPPTLARLVR-GETTRVLTTLVVREDDMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D R F L +V G+G ++A+ LS T EL I ++K I IPG+ K+ Sbjct: 60 YGFTDDDARSMFHRLTAVSGLGPKLAIAALSVFTPGELAAHITSGDAKTIQSIPGVGKKM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179 A R++ ELK K L Q + + S SFA + ALV LG+ + + Sbjct: 120 ADRMVLELKDKLQGLYPGAAQSEAPEAAGEVPPISGSSFATEQVVEALVGLGFPEK-SAR 178 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 A V + E + A+ S ++R AL + Sbjct: 179 AAVDAVAAENDGAESSVLLRAALNRL 204 >gi|163814140|ref|ZP_02205532.1| hypothetical protein COPEUT_00294 [Coprococcus eutactus ATCC 27759] gi|158450589|gb|EDP27584.1| hypothetical protein COPEUT_00294 [Coprococcus eutactus ATCC 27759] Length = 208 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 58/209 (27%), Positives = 100/209 (47%), Gaps = 6/209 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G +E + ++++ G+ Y + + ++ L + +F +R+D+I L Sbjct: 1 MISYITGTLEYQSGNSIVVECGGIGYSMMISGQFMNRLPAMHSHIKVFTYMSVREDEISL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + F +L SV GVG + AM +LS +T EL +++ ++ K I + GI K Sbjct: 61 YGFYDRDELEVFKVLLSVNGVGPKAAMSILSALTVNELRLAVVSEDVKAITRANGIGTKG 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVN----KEQAHICSMPSFAINAISALVNLGYGQDQ 176 ASRI+ ELK K + +N S N ++AL LGY + Sbjct: 121 ASRIILELKDKLRLEDMIDAAYEDAMNGSRVGSGGVAQSDIDTRANVVAALTALGYSGVE 180 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A AV V + D+ Q+++ +L+ I Sbjct: 181 AGRAVNRV--EGWQDMDEEQLLKASLKNI 207 >gi|323698439|ref|ZP_08110351.1| Holliday junction DNA helicase RuvA [Desulfovibrio sp. ND132] gi|323458371|gb|EGB14236.1| Holliday junction DNA helicase RuvA [Desulfovibrio desulfuricans ND132] Length = 206 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 6/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG + G + E +++ GV Y + P L+ L G LFV T + + I Sbjct: 1 MIGYLLGELLSADEKGLVLLTPGGVGYEVAAPTSVLAKLPGRGQEVRLFVHTQVGEKAID 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGFL+ D F L S+ +G + AM +LS A L E ++ ++ +PGI K Sbjct: 61 LFGFLTADDLDLFRTLISLDKLGPKKAMAILSMFDAAHLREIAFREDVNTLSTVPGIGPK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I+ LK K L V + + Q ++A++ L LGYG+D+ Sbjct: 121 SAKQILWNLKDKVDKLKPVTGRGSAADQGRQGPQGE----YLDALAGLKGLGYGEDEIRP 176 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 ++ +E ++ D + IR L+ I+ Sbjct: 177 MLIETFDEEPDL-DAAGAIRAVLKKIN 202 >gi|161501897|ref|YP_219549.2| Holliday junction DNA helicase motor protein [Chlamydophila abortus S26/3] gi|90134722|sp|Q5L6Z3|RUVA_CHLAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA Length = 207 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 100/205 (48%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQIR 59 M I+G + + ++I+ QG+ + I+ P R L L ++ ++ T +R+ + Sbjct: 1 MYDYIRGVLTYISSSTMVIESQGLGFSIFAPERWLIELSSQLHRELIVYTYTVVRETEHV 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + +R+ F +L S GVG + + +L+ + ++L ++ K IA +PGI K Sbjct: 61 LYGFHTRGERECFRMLISFSGVGPKTGLAILNTFSLSQLCSIARAEDIKAIASVPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A ++M +LK K L + Q ++ + PS I AL LGY + A Sbjct: 121 TAEKLMVDLKQKLADLLPLDAQILASW------EPAKPSCMEEGIQALAALGYPKSSAER 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + + + + A ++I+ +AL+ Sbjct: 175 MIAEAMSELPDHASVAEILPIALKK 199 >gi|210622015|ref|ZP_03292958.1| hypothetical protein CLOHIR_00904 [Clostridium hiranonis DSM 13275] gi|210154460|gb|EEA85466.1| hypothetical protein CLOHIR_00904 [Clostridium hiranonis DSM 13275] Length = 200 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 96/205 (46%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG IE + D + ID + Y I T + ++G+ +F + +R+D++ L Sbjct: 1 MYRYIKGTIEEIGFDSITIDNNDIGYSILVSSNTAAQ-YQVGEKAKVFTKLIVREDEMFL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF S+ +R F +L S+ +G +V + +LS T +L I+ ++ I++ PG+ K Sbjct: 60 CGFHSEEERNMFDMLTSISKIGPKVGLSILSFATPKQLGAYILSEDIAKISKAPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + + ++ AL+ LGY Q +A A Sbjct: 120 AERIILELKDKIDKTQIEFEPTL-------LEAQPAAISIDESVDALIALGYTQAEAKEA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +K + +IIR +L + Sbjct: 173 VKK---TKKPGMETEEIIRKSLTYL 194 >gi|311739557|ref|ZP_07713392.1| crossover junction ATP-dependent DNA helicase RuvA [Corynebacterium pseudogenitalium ATCC 33035] gi|311305373|gb|EFQ81441.1| crossover junction ATP-dependent DNA helicase RuvA [Corynebacterium pseudogenitalium ATCC 33035] Length = 205 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +ID GV Y +TL L + G+ T+ +++D + L Sbjct: 1 MIAALRGEVIHIGLDHGVIDCAGVGYKFLATPKTLGTL-RRGEQATVLTNLVVKEDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +D DR+ F +LQSV G+G ++A+ LS + A EL +I ++ K + IPG+ ++ Sbjct: 60 YGFSADEDREMFHVLQSVSGLGPKLALAALSVMGAGELAAAIGGEDVKALQSIPGVGKRM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ELK K + + V+ A + + + AL+ LG+ A Sbjct: 120 AQRLALELKDKVAAFAPSEAAAAGSVDT--AVAPAGGAVVESVTEALIGLGFTDKGARPV 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V S + AD S ++R AL + Sbjct: 178 VESAYADNPD-ADTSSLLRAALAQL 201 >gi|313847675|emb|CBY16663.1| putative holliday junction DNA helicase RuvA [Chlamydophila psittaci RD1] Length = 222 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 51/205 (24%), Positives = 99/205 (48%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQIR 59 M I+G + + ++++ QG+ + I+ P R L L ++ ++ T +R+ + Sbjct: 16 MYDYIRGVLTYISSGTMVVESQGLGFSIFAPDRWLMELSSQLHRELIVYTYTVVRETEHV 75 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + +R+ F +L S GVG + + +L+ + ++L ++ K IA +PGI K Sbjct: 76 LYGFNTRGERECFRMLISFSGVGPKTGLAILNTFSLSKLCSIARAEDIKAIASVPGIGKK 135 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A ++M +LK K L + Q + + PS I AL LGY + A Sbjct: 136 TAEKLMVDLKQKLADLLPLDSQITASWG------PAKPSCMEEGIQALAALGYPKSSAER 189 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + + + + A ++I+ +AL+ Sbjct: 190 MIAEAMSELPDHASIAEILPIALKK 214 >gi|253581541|ref|ZP_04858766.1| holliday junction DNA helicase ruvA [Fusobacterium varium ATCC 27725] gi|251836611|gb|EES65146.1| holliday junction DNA helicase ruvA [Fusobacterium varium ATCC 27725] Length = 198 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 46/204 (22%), Positives = 95/204 (46%), Gaps = 9/204 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G +E DY+ +DV GV Y + +RT + G+ L++ ++++D +L Sbjct: 1 MYEYLRGKVEYKKPDYLALDVNGVGYKVNISLRTYDFINA-GEEVKLYIYNYIKEDAFKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GFL + +R F +L V+G+G +A+ V+S + + + + + ++P + K Sbjct: 60 IGFLEERERNLFEMLLGVKGIGVSLALSVMSTFDIDTIRDLVATDDYNNLKRVPKLGEKK 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 + +++ +LK K +L D ++ ISAL LGY + + T Sbjct: 120 SQQLILDLKSKLKTL------DALSIDTRNDDAARHLMIEEELISALEGLGYSKKEINTL 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + ++ K+ + I+ L+ Sbjct: 174 ITR--EELKSFKTIEEAIKGVLKK 195 >gi|68536132|ref|YP_250837.1| holliday junction DNA helicase [Corynebacterium jeikeium K411] gi|90134845|sp|Q4JVD8|RUVA_CORJK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|68263731|emb|CAI37219.1| holliday junction DNA helicase [Corynebacterium jeikeium K411] Length = 211 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 60/211 (28%), Positives = 99/211 (46%), Gaps = 7/211 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + DYV I+ GV Y T++ L + G+ + +R+D L Sbjct: 1 MIASLRGTVIDKGLDYVTIECAGVGYQCSGTATTIAELPR-GEEVFVTTALVVREDSQTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 + F +++ F LQSV GVGAR+A+ +LS IT EL ++ + K + + PG+ ++ Sbjct: 60 YVFKDADEKRAFATLQSVSGVGARLALAILSVITPQELARAVSNGDHKTLQRAPGVGKRL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI----CSMPSFAINAISALVNLGYGQDQ 176 A R+ +LKGK L + P + ALV LG+ + + Sbjct: 120 AERMAVDLKGKVADLGEIADTGAVGAAGAVGDGGDGQAVAPDVREQVLEALVGLGFTESK 179 Query: 177 ATTAVVSVLKK--EKNIADDSQIIRLALRAI 205 A T + +VL + D S ++R +L AI Sbjct: 180 AGTTIEAVLSQWSAPQAPDASGLLRASLAAI 210 >gi|256832601|ref|YP_003161328.1| Holliday junction DNA helicase RuvA [Jonesia denitrificans DSM 20603] gi|256686132|gb|ACV09025.1| Holliday junction DNA helicase RuvA [Jonesia denitrificans DSM 20603] Length = 205 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 60/209 (28%), Positives = 100/209 (47%), Gaps = 13/209 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G ++ + D ++ V GV Y++Y TL+ L + G TL+ +R+D + L Sbjct: 1 MIAQLTGIVQKIRLDSAILTVHGVGYLVYATPATLATL-REGQDATLWTSLVVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F +Q+V GVG R+A+ +L+ A L +++ + K + ++PGI K+ Sbjct: 60 FGFTDFDERDVFETVQTVSGVGPRLALAMLAIHPAQALRTAVVHADIKALTKVPGIGPKV 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL + S Q + + A I AL++LG+ QA A Sbjct: 120 AQRIVLELSNRMTPPQSETTQTPTTPTEHDAS--------EQVIDALMSLGWNTKQAENA 171 Query: 181 VVSVLKKEKN----IADDSQIIRLALRAI 205 V V A +R AL+ + Sbjct: 172 VDQVRADTGQPIITPAQVPATLRAALKIL 200 >gi|261418393|ref|YP_003252075.1| Holliday junction DNA helicase RuvA [Geobacillus sp. Y412MC61] gi|319767648|ref|YP_004133149.1| Holliday junction DNA helicase RuvA [Geobacillus sp. Y412MC52] gi|261374850|gb|ACX77593.1| Holliday junction DNA helicase RuvA [Geobacillus sp. Y412MC61] gi|317112514|gb|ADU95006.1| Holliday junction DNA helicase RuvA [Geobacillus sp. Y412MC52] Length = 194 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 93/205 (45%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G ++ + +Y++ID G+ Y I+ P + T++ ++R+ L Sbjct: 1 MIEFIRGYVDYVCPEYIVIDHNGIGYEIFTP-NPFAFQESREAAVTVYTYEYVREGVHAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+G + + +L+ EL +I +N + + PG+ K Sbjct: 60 YGFPTREERNLFAKLLQVSGIGPKGGLAILAAGRPDELARAIEEENEAFLCKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK +L++ + A++AL LGY + + Sbjct: 120 ARQMILDLKGKLGALAAPAA---------ARSAAPLSGALAEAVAALKALGYAEREIEKI 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ K+ Q ++ AL + Sbjct: 171 IPALRKE---AMSTEQYVKRALALL 192 >gi|73662426|ref|YP_301207.1| Holliday junction DNA helicase RuvA [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|90135921|sp|Q49Y80|RUVA_STAS1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|72494941|dbj|BAE18262.1| Holliday junction DNA helicase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 200 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 91/205 (44%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + L +V+++ GV Y I P + + + +R+D L Sbjct: 1 MYAYIKGTLTELNPTHVVVEASGVGYEIQTP-NSYRFQKYMDHEVVVHTSLIVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ ++ F+ L V G+G + A+ +L+ + ++ +I +N + + PGI K Sbjct: 60 YGFINQEEKDMFLSLIKVTGIGPKSALAILASSSPNDVKIAIENENDAYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + D S + + A+ AL LGY + + T Sbjct: 120 ARQIVLDLKGKVQ----INDVDSSQILNTDTQDHANAPIIKEALLALEALGYSKRELTKV 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 S+ K+ + ++ L+ + Sbjct: 176 EKSLSKETFD--SVDDAVKRGLQLL 198 >gi|260578827|ref|ZP_05846734.1| Holliday junction DNA helicase RuvA [Corynebacterium jeikeium ATCC 43734] gi|258603125|gb|EEW16395.1| Holliday junction DNA helicase RuvA [Corynebacterium jeikeium ATCC 43734] Length = 211 Score = 144 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 60/211 (28%), Positives = 99/211 (46%), Gaps = 7/211 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + DYV I+ GV Y T++ L + G+ + +R+D L Sbjct: 1 MIASLRGTVIDKGLDYVTIECAGVGYQCSGTATTIAELPR-GEEVFVTTALVVREDSQTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 + F +++ F LQSV GVGAR+A+ +LS IT EL ++ + K + + PG+ ++ Sbjct: 60 YVFKDADEKRAFATLQSVSGVGARLALAILSVITPQELARAVSNGDHKTLQKAPGVGKRL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI----CSMPSFAINAISALVNLGYGQDQ 176 A R+ +LKGK L + P + ALV LG+ + + Sbjct: 120 AERMAVDLKGKVADLGEIADTGAVGAAGAVGDGGDGQAVAPDVREQVLEALVGLGFTESK 179 Query: 177 ATTAVVSVLKK--EKNIADDSQIIRLALRAI 205 A T + +VL + D S ++R +L AI Sbjct: 180 AGTTIEAVLSQWSAPQAPDASGLLRASLAAI 210 >gi|188994697|ref|YP_001928949.1| Holliday junction DNA helicase RuvA [Porphyromonas gingivalis ATCC 33277] gi|229560115|sp|B2RJ07|RUVA_PORG3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|188594377|dbj|BAG33352.1| probable Holliday junction DNA helicase RuvA [Porphyromonas gingivalis ATCC 33277] Length = 202 Score = 144 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 94/205 (45%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG I GL ++I+ GV Y + + T S + + +R+D L Sbjct: 1 MIEYLKGAIVGLTPTNLVIECAGVGYDVNVSLTTYSAYQGKKEGLIWITQL-IREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L SV GVG A +LS EL I + + + GI +K Sbjct: 60 YGFSTKEERTLFGQLTSVSGVGPTTARLILSSYAPQELAALITTGQADALKAVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LKGK L + + +S + + AISAL LG+ A Sbjct: 120 AQRIIVDLKGKI-QLETSSDEILSARTAVGDAALNTIASGEEAISALKMLGFADPAIRKA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V S+L ++ ++A II+ ALR + Sbjct: 179 VKSILSEDSSLA-VEDIIKRALRML 202 >gi|328950866|ref|YP_004368201.1| Holliday junction ATP-dependent DNA helicase ruvA [Marinithermus hydrothermalis DSM 14884] gi|328451190|gb|AEB12091.1| Holliday junction ATP-dependent DNA helicase ruvA [Marinithermus hydrothermalis DSM 14884] Length = 201 Score = 144 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 98/204 (48%), Gaps = 13/204 (6%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 I ++G + ED +I G+ + ++CP TL L + G+ L +R+D L+ Sbjct: 10 IRFLQGRLVDKREDRAVILTGGIGFEVWCPTPTLETL-REGEEVALHTRLVVREDGFTLY 68 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF + + F LL SV GVG RVA+G+L+ + + L ++ ++K + PG+ ++A Sbjct: 69 GFHDPVYLELFDLLTSVSGVGPRVALGMLAALPPSLLGRAVAEGDAKALTAAPGVGKRLA 128 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 RI+ EL+ K + + A AI AL LG+ + Q T V Sbjct: 129 ERIVLELRHKIPAHLTAGGG-----------AHRANPNAHEAIEALAALGFREAQVRTVV 177 Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205 ++ ++ A ++IR ALR + Sbjct: 178 GTLAAQDPE-APVEELIRRALRQL 200 >gi|300088237|ref|YP_003758759.1| Holliday junction DNA helicase RuvA [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527970|gb|ADJ26438.1| Holliday junction DNA helicase RuvA [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 195 Score = 144 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 101/206 (49%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG L D+V+++V GV Y ++ TLS + G+ L+ +R+D + L Sbjct: 1 MISTLKGKAALLGADWVIVEVGGVGYKVFVSTATLSQIQNAGE-IRLYTHLQVREDALTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ + F + V G+GAR+A+ +LS +L I N+ ++ +PG+ K Sbjct: 60 FGFLTFEELGIFETMLEVSGIGARLALALLSAFKPEDLANIIATGNADMLCTVPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ ELK K N A + + ++AL LGY +A A Sbjct: 120 ASRIVLELKDKVAR------------NWSAAPAGEGGAVDNDVMAALTALGYSGAEAARA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 VV++ + K + IRLAL +S Sbjct: 168 VVALPRDGK--LTLEEKIRLALAGLS 191 >gi|90962101|ref|YP_536017.1| Holliday junction DNA helicase RuvA [Lactobacillus salivarius UCC118] gi|227891123|ref|ZP_04008928.1| Holliday junction DNA helicase [Lactobacillus salivarius ATCC 11741] gi|123391344|sp|Q1WT17|RUVA_LACS1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|90821295|gb|ABD99934.1| Holliday junction DNA helicase [Lactobacillus salivarius UCC118] gi|227866997|gb|EEJ74418.1| Holliday junction DNA helicase [Lactobacillus salivarius ATCC 11741] Length = 201 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 91/205 (44%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G I + Y+++DV GV Y +Y +FV +R + I L Sbjct: 1 MYEYLRGVITEVTPYYIVVDVNGVGYQVYV-ANPFKYEEDEHAEQKVFVYQAVRDNDISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++Q F+ L V G+G + A+ +L+ L+ +I + + + PGI K Sbjct: 60 YGFKNSSEKQLFLKLLDVSGIGPKSALAILANDDNRGLINAINSDDDGYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + S + ++ + + + + ++ AL LGY + + Sbjct: 120 AKQIILDLKGKLSDVDSDM---LTGQDNLDLDLNASSPYLKESLEALRALGYTKTEVKRI 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + K + +R LR + Sbjct: 177 SKKLEKYDG--KSTDDYLRQGLRLL 199 >gi|237738311|ref|ZP_04568792.1| holliday junction DNA helicase ruvA [Fusobacterium mortiferum ATCC 9817] gi|229420191|gb|EEO35238.1| holliday junction DNA helicase ruvA [Fusobacterium mortiferum ATCC 9817] Length = 196 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 47/204 (23%), Positives = 95/204 (46%), Gaps = 11/204 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG +E DY+ +DV GV Y + +R + K G+ L++ ++++D +L Sbjct: 1 MFEYLKGKVEYKKPDYLALDVNGVGYKVNISLRVYDKI-KTGESVRLYIFNYIKEDAFKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GFL + +R F +L V+GVG + + ++S +L + + + + ++P + K Sbjct: 60 IGFLEERERNLFEMLLGVKGVGVSLTLSIMSTFDVEQLRKIVAENDYATLKRVPKLGEKK 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK ++ ++ QD + AL LGY Q + + Sbjct: 120 AQQVILDLKGKLKAIGNLFTQDENLFESFA--------IEDELYEALEALGYSQKEINSL 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V ++ + + I+ L+ Sbjct: 172 VSK--EEIRGFTSIEEAIKCVLKK 193 >gi|322412854|gb|EFY03762.1| Holliday junction DNA helicase RuvA [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 197 Score = 144 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 91/205 (44%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ YII S + T+++ +R+D L Sbjct: 1 MYDYIKGQLTKITAKYIVVETNGLGYIINV-ANPYSFTDSVNQLVTIYLHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNQGLVNAIDTSDIKYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK + + +K Q S AI AL+ LGY + Sbjct: 120 AQQMVLDLAGKFVEVPQE-------TSKAQPSTSSNNDELDEAIEALLALGYKATELKK- 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + E Q I+ AL+ + Sbjct: 172 IRAFF--EGTSETAEQYIKSALKLL 194 >gi|119961641|ref|YP_948037.1| Holliday junction DNA helicase RuvA [Arthrobacter aurescens TC1] gi|119948500|gb|ABM07411.1| Holliday junction DNA helicase RuvA [Arthrobacter aurescens TC1] Length = 231 Score = 144 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 97/207 (46%), Gaps = 12/207 (5%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 I ++G + + +ID+ G +Y +TLS L K G LF +R+D + LF Sbjct: 19 ISFLRGTVAHVGLSTAVIDLNGAGMSVYATPQTLSHL-KTGSEAKLFTSMIVREDSLTLF 77 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF D +R+ F +L SV GVG R+A+ VL+ + + +SK ++PGI K+A Sbjct: 78 GFADDDEREVFDVLLSVSGVGPRLALAVLAVHEPEAIRVAAHTGDSKTFTKVPGIGPKVA 137 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 RI+ EL GK + + + + ++A+ +LG+ + A ++ Sbjct: 138 GRIVLELAGKLVPHGTSTGTAPAA--------APNAEWKPQVVAAMTSLGWSEKDANGSI 189 Query: 182 VSVLKKEKNIAD---DSQIIRLALRAI 205 + + D +QI+R LR + Sbjct: 190 DKAMADSPELVDAGNVAQILRATLRWL 216 >gi|295102071|emb|CBK99616.1| Holliday junction DNA helicase subunit RuvA [Faecalibacterium prausnitzii L2-6] Length = 203 Score = 144 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 96/206 (46%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G I + V+I GV Y CP L +G+ T++ ++ ++ + L Sbjct: 1 MIYSLTGKIIKKTLNAVVICCGGVGYYAQCPASVAGALPGVGNEATIYTVMNVTENDVSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ + F LL SV GVGA+V + +LS + + +I + K G+ K+ Sbjct: 61 YGFASEEQQACFELLTSVSGVGAKVGLAILSVMEPDRVALAISAGDHKAFKAASGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + + + + I+ALV+LGY Q +A A Sbjct: 121 AQRIVLELKDKVAKGFAAGIDLENVAGAASDTAAAQGAGQA--IAALVSLGYSQSEAALA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + +II+LALR+++ Sbjct: 179 VSKIDGTLP----VEEIIKLALRSMA 200 >gi|323143601|ref|ZP_08078278.1| Holliday junction DNA helicase RuvA [Succinatimonas hippei YIT 12066] gi|322416664|gb|EFY07321.1| Holliday junction DNA helicase RuvA [Succinatimonas hippei YIT 12066] Length = 207 Score = 144 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 103/207 (49%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M G ++G + + VLI+V GV Y + P+ +L+ + + + ++V +R+D L Sbjct: 1 MFGSLRGKVLRIDGVTVLIEVGGVGYEVEMPVTSLAKI-SVNEEEFIYVHHVVREDDELL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF DR F L V GVG ++A+ VLS A + + ++ + + Q+PG+ K Sbjct: 60 YGFCDLSDRTLFRELIKVNGVGPKLALAVLSSFNAHDFIAAVTSGRTGALTQVPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA-INAISALVNLGYGQDQATT 179 A R+M ELK + L + ++K + + A A+SAL+ LGY + A Sbjct: 120 AERLMVELKDRLDKLPLSDTVSTADLSKVNGMAAVVGNIAVDEAVSALIGLGYKEALAFE 179 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 V SV K+ D QII AL IS Sbjct: 180 YVNSVAKE---GMDTKQIIVAALGLIS 203 >gi|228910257|ref|ZP_04074075.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis IBL 200] gi|228849421|gb|EEM94257.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis IBL 200] Length = 197 Score = 144 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 46/196 (23%), Positives = 92/196 (46%), Gaps = 5/196 (2%) Query: 10 EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69 E + +YV+ID G+ Y I+ P + ++ ++R+D + L+GF + +R Sbjct: 2 EYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALYGFKTREER 59 Query: 70 QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 F L V G+G + A+ +L+ ++V+++ ++ K + + PG+ K A +++ +LK Sbjct: 60 LLFTKLLGVSGIGPKGALAILASGQTGQVVQAVEHEDEKFLVKFPGVGKKTARQMILDLK 119 Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189 GK + D+ + + A+ AL LGY + + + V +LK+ Sbjct: 120 GKLADVVPDAFVDLFSDTERFDEKKGSSAELDEALEALRALGYAEREVSRVVPELLKE-- 177 Query: 190 NIADDSQIIRLALRAI 205 Q I+ AL + Sbjct: 178 -SLTTDQYIKKALSLL 192 >gi|332978537|gb|EGK15246.1| crossover junction ATP-dependent DNA helicase RuvA [Psychrobacter sp. 1501(2011)] Length = 210 Score = 144 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 56/209 (26%), Positives = 103/209 (49%), Gaps = 4/209 (1%) Query: 1 MIGKIKGNIEGLYED-YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG I+G + L ++ GV Y + P+ L ++ +++ H+R+D Sbjct: 1 MIGSIEGRVCHLAAPVACIMTASGVGYEVELPLPDFCQL-QLDATVSVWTHLHVREDAQL 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF+ +R F L + GVGA++A+ ++S ++A EL +++ N + ++PGI K Sbjct: 60 LYGFIKHQERDVFRQLIRINGVGAKMALAMMSTMSAPELKQAVETDNDVALTRVPGIGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKGK ++ + + S SAL++LGY +A Sbjct: 120 TAQRLLIELKGKFDNIETSGGLFEEQGGATISLAGSEGVILAEVESALISLGYRDKEAQR 179 Query: 180 AVVSVLKKEKN--IADDSQIIRLALRAIS 206 A+ + + E I D +++L L+ +S Sbjct: 180 AIKAARETEAGQTIVDTQSLLKLTLQQLS 208 >gi|227833242|ref|YP_002834949.1| holliday junction DNA helicase [Corynebacterium aurimucosum ATCC 700975] gi|262184228|ref|ZP_06043649.1| holliday junction DNA helicase [Corynebacterium aurimucosum ATCC 700975] gi|254766955|sp|C3PGQ7|RUVA_CORA7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|227454258|gb|ACP33011.1| holliday junction DNA helicase [Corynebacterium aurimucosum ATCC 700975] Length = 202 Score = 144 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 51/205 (24%), Positives = 103/205 (50%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +++ GV Y + L L + G+ + +++D + L Sbjct: 1 MIASLRGTVLDIQLDHAVLECAGVGYKVLATPAMLGTLQR-GEEARVMTTLVVKEDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S DR F +LQ+V G+G ++A+ LS ++A +L ++I + + + +IPG+ ++ Sbjct: 60 YGFTSQDDRDMFHVLQTVSGLGPKLALAALSVMSAGDLAQAIAGEEAARLQKIPGVGKRV 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + + + A + + + AL+ LG+ A Sbjct: 120 AQRLILELKDKVKAFAP-----AESADLSSAAPAAAGPVVEDVVEALIGLGFTDKMARPV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V SV+ ++ + A ++R AL + Sbjct: 175 VESVVAEQPDAA-TPVVLRAALSQL 198 >gi|25028330|ref|NP_738384.1| Holliday junction DNA helicase motor protein [Corynebacterium efficiens YS-314] gi|259507385|ref|ZP_05750285.1| Holliday junction DNA helicase RuvA [Corynebacterium efficiens YS-314] gi|29336725|sp|Q8FPK4|RUVA_COREF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|23493615|dbj|BAC18584.1| holliday junction DNA-helicase RuvA [Corynebacterium efficiens YS-314] gi|259165010|gb|EEW49564.1| Holliday junction DNA helicase RuvA [Corynebacterium efficiens YS-314] Length = 204 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 56/194 (28%), Positives = 101/194 (52%), Gaps = 3/194 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +I+ QGV Y + TL+ L + G+ TL +R+D ++L Sbjct: 1 MIASLRGTVISIGLGTAVIECQGVGYEVTTTPTTLARLQR-GEEATLLTTMVVREDAMKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ D R+ F LLQ+V G+G R+A+ S +T E+ ++I ++K + ++PG+ ++ Sbjct: 60 YGFIDDQSREMFALLQTVTGLGPRLALACESVLTPLEIAQAIAGGDAKTLQRVPGVGKRM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + + V D + Q + + AL LG+ + QA A Sbjct: 120 ADRLIVELKDKVAAYTVGVVDDGAPTAPTQGVAPVVVVDQV--TQALTGLGFTEKQADDA 177 Query: 181 VVSVLKKEKNIADD 194 V +VL + + Sbjct: 178 VAAVLSADPGLDTS 191 >gi|228923173|ref|ZP_04086464.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228941589|ref|ZP_04104137.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228960694|ref|ZP_04122338.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar pakistani str. T13001] gi|228967497|ref|ZP_04128525.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar sotto str. T04001] gi|228974518|ref|ZP_04135085.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981112|ref|ZP_04141413.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis Bt407] gi|228987674|ref|ZP_04147786.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229111893|ref|ZP_04241439.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus Rock1-15] gi|229129701|ref|ZP_04258669.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus BDRD-Cer4] gi|229146992|ref|ZP_04275354.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus BDRD-ST24] gi|229152624|ref|ZP_04280813.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus m1550] gi|229158036|ref|ZP_04286107.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus ATCC 4342] gi|229175095|ref|ZP_04302612.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus MM3] gi|228608391|gb|EEK65696.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus MM3] gi|228625489|gb|EEK82245.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus ATCC 4342] gi|228630885|gb|EEK87525.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus m1550] gi|228636489|gb|EEK92957.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus BDRD-ST24] gi|228653818|gb|EEL09688.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus BDRD-Cer4] gi|228671649|gb|EEL26947.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus Rock1-15] gi|228772059|gb|EEM20513.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228778653|gb|EEM26919.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis Bt407] gi|228785235|gb|EEM33247.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228792212|gb|EEM39786.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar sotto str. T04001] gi|228799000|gb|EEM45973.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar pakistani str. T13001] gi|228818096|gb|EEM64173.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228836552|gb|EEM81902.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 197 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 92/196 (46%), Gaps = 5/196 (2%) Query: 10 EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69 E + +YV+ID G+ Y I+ P + ++ ++R+D + L+GF + +R Sbjct: 2 EYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALYGFKTREER 59 Query: 70 QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 F L V G+G + A+ +L+ ++V++I ++ K + + PG+ K A +++ +LK Sbjct: 60 LLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLK 119 Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189 GK + D+ + + A+ AL LGY + + + V +LK+ Sbjct: 120 GKLADVVPDAFVDLFSDTERFDEKKGSSAELDEALEALRALGYAEREVSRVVPELLKE-- 177 Query: 190 NIADDSQIIRLALRAI 205 Q I+ AL + Sbjct: 178 -SLTTDQYIKKALSLL 192 >gi|227503511|ref|ZP_03933560.1| Holliday junction DNA helicase motor protein [Corynebacterium accolens ATCC 49725] gi|227076014|gb|EEI13977.1| Holliday junction DNA helicase motor protein [Corynebacterium accolens ATCC 49725] Length = 202 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 100/205 (48%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +I+ GV Y +TL L + G+ + +++D + L Sbjct: 1 MIAALRGEVLHIGLDHGVIECGGVGYKFLATAKTLGTL-RRGETAFVLTTLVVKEDALTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF SD DR+ F +LQSV G+G ++A+ LS + A EL +I ++ K + IPG+ ++ Sbjct: 60 YGFTSDDDREMFQVLQSVSGLGPKLALAALSVMGAEELAAAIGGEDVKALQSIPGVGKRM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ELK K + D + + + AL+ LG+ + A Sbjct: 120 AQRLTLELKDKVKRFAGTPVPDAAPEAT-----GAGGPVVDSVTEALLGLGFTEKAARPV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + + AD S ++R AL + Sbjct: 175 VEAAYAEAP-AADTSTLLRAALAQL 198 >gi|329942438|ref|ZP_08291248.1| holliday junction DNA helicase RuvA [Chlamydophila psittaci Cal10] gi|332287079|ref|YP_004421980.1| holliday junction DNA helicase [Chlamydophila psittaci 6BC] gi|325507386|gb|ADZ19024.1| holliday junction DNA helicase [Chlamydophila psittaci 6BC] gi|328815348|gb|EGF85336.1| holliday junction DNA helicase RuvA [Chlamydophila psittaci Cal10] gi|328914313|gb|AEB55146.1| Holliday junction DNA helicase RuvA [Chlamydophila psittaci 6BC] Length = 207 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 51/205 (24%), Positives = 99/205 (48%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQIR 59 M I+G + + ++++ QG+ + I+ P R L L ++ ++ T +R+ + Sbjct: 1 MYDYIRGVLTYISSGTMVVESQGLGFSIFAPDRWLMELSSQLHRELIVYTYTVVRETEHV 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + +R+ F +L S GVG + + +L+ + ++L ++ K IA +PGI K Sbjct: 61 LYGFNTRGERECFRMLISFSGVGPKTGLAILNTFSLSKLCSIARAEDIKAIASVPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A ++M +LK K L + Q + + PS I AL LGY + A Sbjct: 121 TAEKLMVDLKQKLADLLPLDSQITASWG------PAKPSCMEEGIQALAALGYPKSSAER 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + + + + A ++I+ +AL+ Sbjct: 175 MIAEAMSELPDHASIAEILPIALKK 199 >gi|320011892|gb|ADW06742.1| Holliday junction DNA helicase RuvA [Streptomyces flavogriseus ATCC 33331] Length = 208 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 56/212 (26%), Positives = 98/212 (46%), Gaps = 13/212 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L +I+V G+ + C TL+ L +IG L +R+D + L Sbjct: 1 MIAFVSGPVAALAPTTAVIEVGGIGMAVQCTPGTLAGL-RIGTDARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ + L ++ + K + + GI K Sbjct: 60 YGFADDDERQVFELLQTASGVGPRLAQAMLATHSPDALRTAVATGDEKALTAVSGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK + + + ++ S+ +AL+ LGY +A A Sbjct: 120 AQKLLLELKDRLGDPVG------ARIGQQGVGTPVSSSWRDQLQAALIGLGYATREADEA 173 Query: 181 VVSVLKK------EKNIADDSQIIRLALRAIS 206 V +V + A Q++R AL+ ++ Sbjct: 174 VTAVTPQAEAAIAGGGQAPVPQLLRAALQTLN 205 >gi|229192632|ref|ZP_04319593.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus ATCC 10876] gi|228590939|gb|EEK48797.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus ATCC 10876] Length = 197 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 92/196 (46%), Gaps = 5/196 (2%) Query: 10 EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69 E + +YV+ID G+ Y I+ P + ++ ++R+D + L+GF + +R Sbjct: 2 EYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALYGFKTREER 59 Query: 70 QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 F L V G+G + A+ +L+ ++V++I ++ K + + PG+ K A +++ +LK Sbjct: 60 LLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLK 119 Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189 GK + D+ + + A+ AL LGY + + + V +LK+ Sbjct: 120 GKLADVVPDAFVDLFSDTERFDENKGSSAELDEALEALRALGYAEREVSRVVPELLKE-- 177 Query: 190 NIADDSQIIRLALRAI 205 Q I+ AL + Sbjct: 178 -ALTTDQYIKKALSLL 192 >gi|254441542|ref|ZP_05055035.1| Holliday junction DNA helicase RuvA [Octadecabacter antarcticus 307] gi|198251620|gb|EDY75935.1| Holliday junction DNA helicase RuvA [Octadecabacter antarcticus 307] Length = 231 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 118/229 (51%), Gaps = 24/229 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G +E D+VLIDV+GV YI++ R ++ L ++G+ L+ + +R+D ++L Sbjct: 1 MIGRIAGRLEYRATDHVLIDVKGVGYIVFVSDRVMATLPRVGEAVALYTDLLVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++W LL SVQG+GA+ ++ +L + A + SI + + +A G+ K Sbjct: 61 FGFTTLVEKEWHRLLMSVQGIGAKASLAILGTLGADGVSRSIAMGDWATVATAKGVGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSC-----------------------VNKEQAHICSMP 157 A +++ +LK KA S+ ++ V++ Sbjct: 121 AKKVILDLKDKAHSVMAMAGTAAGAASAAGGVASVSADAETDADADALVDRYDGPAAGNG 180 Query: 158 SFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 + A+SAL NLGYG A AV + + AD + +IR AL+ ++ Sbjct: 181 AAQSEALSALSNLGYGPSDAAGAVAQAAVEN-DGADTAVLIRAALKLLA 228 >gi|332883220|gb|EGK03503.1| Holliday junction ATP-dependent DNA helicase ruvA [Dysgonomonas mossii DSM 22836] Length = 193 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 100/205 (48%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG+I L ++ G+ Y I + T + + L++ +R+D +L Sbjct: 1 MIDYIKGDIAELTPTSATLETHGIGYFINISLNTYTSISGQKS-AKLYIYEAIREDAYQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F+LL SV G+GA +LS +T EL I NS ++ + GI K Sbjct: 60 YGFSEKQERELFILLISVSGIGASTGRMILSSMTVQELTNVIASGNSDILKTVKGIGTKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K +S + +M + AI+ALV LG+ Q + A Sbjct: 120 AQRVIVDLKDKI-KVSGIESVEMFAKTSQAG---------EEAIAALVMLGFPQQASQKA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +LK + + + Q+I+ AL+ + Sbjct: 170 VSKILKDKPD-STVEQVIKTALKML 193 >gi|251783476|ref|YP_002997781.1| Holliday junction DNA helicase RuvA [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242392108|dbj|BAH82567.1| Holliday junction DNA helicase RuvA [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323128222|gb|ADX25519.1| Holliday junction DNA helicase RuvA [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 197 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 91/205 (44%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ YII S + T+++ +R+D L Sbjct: 1 MYDYIKGQLTKITAKYIVVETNGLGYIINV-ANPYSFTDSVNQLVTIYLHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNQGLVNAIDTSDIKYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK + + +K + S AI AL+ LGY + Sbjct: 120 AQQMVLDLAGKFVEVPQE-------TSKAKPSTSSNNDQLDEAIEALLALGYKATELKK- 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + E Q I+ AL+ + Sbjct: 172 IRAFF--EGTSETAEQYIKSALKLL 194 >gi|126737218|ref|ZP_01752953.1| Holliday junction DNA helicase motor protein [Roseobacter sp. SK209-2-6] gi|126721803|gb|EBA18506.1| Holliday junction DNA helicase motor protein [Roseobacter sp. SK209-2-6] Length = 228 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 118/226 (52%), Gaps = 21/226 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ +D++LIDV GV YI+YC RTL+ L G+ L+ + +R+D ++L Sbjct: 1 MIGKLTGRLDYRTQDHILIDVHGVGYIVYCSERTLAALPGTGEAVALYTDMVVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++++W LL SVQGVGA+V++ +L + + +I L + + G+ K Sbjct: 61 YGFTSLVEKEWHRLLCSVQGVGAKVSLAILGALGPDGVSRAIALGDWAAVKAAKGVGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI------------------- 161 A RI+ +LK KA ++ ++ ++ + A Sbjct: 121 AQRIVLDLKDKAPAVMAMGGSVADAMDGPGLEVIEEAEPAATKSARKTAPKKPSGAAAAS 180 Query: 162 -NAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 A+SAL NLGYG A AV + AD++++IR ALR ++ Sbjct: 181 AGALSALGNLGYGPSDAAAAVAEAAATYPD-ADEAELIRAALRLLA 225 >gi|282164971|ref|YP_003357356.1| Holliday junction ATP-dependent DNA helicase RuvA [Methanocella paludicola SANAE] gi|282157285|dbj|BAI62373.1| Holliday junction ATP-dependent DNA helicase RuvA [Methanocella paludicola SANAE] Length = 196 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 115/206 (55%), Gaps = 11/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMR-QDQIR 59 MI ++G +E + ++IDV GV Y + P + G+ C +F+ T+ R +D Sbjct: 1 MIAHLEGRLEYKGHERIVIDVGGVGYDVRVPTHLYDLIPAEGERCKVFIHTYFREEDGTS 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + DR++F LL +V G+G +VA+G++S ITA++L E+I+++++K + ++ G+ K Sbjct: 61 LYGFTTWQDREFFKLLMTVSGIGPKVALGIMSSITASDLAEAIVVEDAKALTRVNGVGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 +A R++ ELK K +S + +A + +A SALV LGY + A+ Sbjct: 121 MAQRLILELKDKVAEMSI----------ENRAKKPGADMTSEDATSALVALGYSRQAASA 170 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 AV ++ ++I+ +LR + Sbjct: 171 AVARARDASPGLSKVEELIKTSLRYL 196 >gi|251798377|ref|YP_003013108.1| Holliday junction DNA helicase RuvA [Paenibacillus sp. JDR-2] gi|247546003|gb|ACT03022.1| Holliday junction DNA helicase RuvA [Paenibacillus sp. JDR-2] Length = 212 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 52/211 (24%), Positives = 98/211 (46%), Gaps = 8/211 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G I + +YV++DV+ V Y ++ P + GK G T+++ H+R+D I L Sbjct: 1 MIDFLRGLISHVESEYVVLDVRDVGYQVFTP-NPYAFAGKEG-TVTIYIHHHVREDAILL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++ F L V G+G RVA+G+L+ ++ +I +N + ++PGI K Sbjct: 59 YGFESREEQTLFRKLLEVSGIGPRVALGILAGGRPDAVIGAIQQENIAFLTRLPGIGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP------SFAINAISALVNLGYGQ 174 A R++ +LK K ++ + + + + A L LGY Sbjct: 119 AQRMILDLKDKLAGFATDAGLLAAAGLAPHQPVSAASAQQGAGTAWEEARDGLSALGYTA 178 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + A ++ +++ AL+ + Sbjct: 179 AELDKAWSALAPSVTADETVDSLMKRALQQL 209 >gi|34540592|ref|NP_905071.1| Holliday junction DNA helicase RuvA [Porphyromonas gingivalis W83] gi|44888375|sp|Q7MW36|RUVA_PORGI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|34396905|gb|AAQ65970.1| Holliday junction DNA helicase RuvA [Porphyromonas gingivalis W83] Length = 202 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 94/205 (45%), Gaps = 3/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG I GL ++I+ GV Y + + T S + + +R+D L Sbjct: 1 MIEYLKGAIVGLTPTNLVIECAGVGYDVNVSLTTYSAYQGKKEGLIWITQL-IREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L SV GVG A +LS EL I + + + GI +K Sbjct: 60 YGFSTKEERTLFGQLTSVSGVGPTTAQLILSSYAPQELAALITTGQADALKAVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LKGK L + + +S + + AISAL LG+ A Sbjct: 120 AQRIIVDLKGKI-QLETSSDEILSARTAVGDAALNTIASGEEAISALKMLGFADPAIRKA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V S+L ++ ++A II+ ALR + Sbjct: 179 VKSILSEDSSLA-VEDIIKRALRML 202 >gi|332670539|ref|YP_004453547.1| Holliday junction DNA helicase RuvA [Cellulomonas fimi ATCC 484] gi|332339577|gb|AEE46160.1| Holliday junction DNA helicase RuvA [Cellulomonas fimi ATCC 484] Length = 204 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 55/208 (26%), Positives = 98/208 (47%), Gaps = 12/208 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D +++V GV ++ TL+ L ++G TL +R+D + L Sbjct: 1 MIASVRGTVLAVRLDSAVVEVGGVGMLVQATPATLAGL-RVGAQATLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R+ F ++Q+V GVG R+A+ +L+ T L ++ ++ + ++PGI K Sbjct: 60 FGFADADEREVFEVVQTVSGVGPRLALAMLAVHTPDGLRRAVAGEDLAALMRVPGIGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL + S + + ALV LG+ A A Sbjct: 120 AQRIVLELGDRL--------GAPSGAGAPATSSAASDDRRDQVVEALVGLGWNAKAAGDA 171 Query: 181 VVSVLKKEKN---IADDSQIIRLALRAI 205 V +VL+ + + ++R ALR + Sbjct: 172 VSAVLQDAPGPVAADEVAGVLRAALRTL 199 >gi|229071929|ref|ZP_04205140.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus F65185] gi|228711225|gb|EEL63189.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus F65185] Length = 197 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 92/196 (46%), Gaps = 5/196 (2%) Query: 10 EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69 E + +YV+ID G+ Y I+ P + ++ ++R+D + L+GF + +R Sbjct: 2 EYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALYGFKTREER 59 Query: 70 QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 F L V G+G + A+ +L+ ++V++I ++ K + + PG+ K A +++ +LK Sbjct: 60 LLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLK 119 Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189 GK + D+ + + A+ AL LGY + + + V +LK+ Sbjct: 120 GKLADVVPDAFVDLFSDAERFDEKKGSSAELDEALEALRALGYAEREVSRVVPELLKE-- 177 Query: 190 NIADDSQIIRLALRAI 205 Q I+ AL + Sbjct: 178 -ALTTDQYIKKALSLL 192 >gi|303238091|ref|ZP_07324631.1| Holliday junction DNA helicase RuvA [Prevotella disiens FB035-09AN] gi|302481726|gb|EFL44781.1| Holliday junction DNA helicase RuvA [Prevotella disiens FB035-09AN] Length = 205 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 58/209 (27%), Positives = 97/209 (46%), Gaps = 9/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM----RQD 56 MI IKG + L ++D GV Y + + T + + LFV + R D Sbjct: 1 MIEYIKGELAELTPALAVVDANGVGYGLNISLNTYGVI-QGKKSVKLFVHEAISMGGRDD 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF + +R + LL +V GVGA A +LS +T EL I + K++ + GI Sbjct: 60 SYTLYGFANKQERGLYRLLITVSGVGANTARMILSSLTPAELCNVIANGDEKMLKAVKGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 +K A RI+ +LK K + + V+ + + A+ AL LG+ Sbjct: 120 GLKTAQRIIVDLKDKIVQSGIAEEL---HVSSQPNAANVNNAVKDEAVGALTMLGFSPAP 176 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + VV +L ++ ++ Q+++LAL+ I Sbjct: 177 SAKVVVDILTEQPDLP-VEQVVKLALKQI 204 >gi|229081685|ref|ZP_04214180.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus Rock4-2] gi|228701689|gb|EEL54180.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus Rock4-2] Length = 197 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 92/196 (46%), Gaps = 5/196 (2%) Query: 10 EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69 E + +YV+ID G+ Y I+ P + ++ ++R+D + L+GF + +R Sbjct: 2 EYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALYGFKTREER 59 Query: 70 QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 F L V G+G + A+ +L+ ++V++I ++ K + + PG+ K A +++ +LK Sbjct: 60 LLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLK 119 Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189 GK + D+ + + A+ AL LGY + + + V +LK+ Sbjct: 120 GKLADVVPDAFVDLFSDTERFDEKKGSSAELDEALEALRALGYAEREVSRVVPELLKE-- 177 Query: 190 NIADDSQIIRLALRAI 205 Q I+ AL + Sbjct: 178 -ALTTDQYIKKALSLL 192 >gi|56421127|ref|YP_148445.1| Holliday junction DNA helicase RuvA [Geobacillus kaustophilus HTA426] gi|297529245|ref|YP_003670520.1| Holliday junction DNA helicase RuvA [Geobacillus sp. C56-T3] gi|81346764|sp|Q5KWQ9|RUVA_GEOKA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|56380969|dbj|BAD76877.1| holliday junction DNA helicase [Geobacillus kaustophilus HTA426] gi|297252497|gb|ADI25943.1| Holliday junction DNA helicase RuvA [Geobacillus sp. C56-T3] Length = 194 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 93/205 (45%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G ++ + +Y++ID G+ Y I+ P + T++ ++R+ L Sbjct: 1 MIEFIRGYVDYVCPEYIVIDHNGIGYEIFTP-NPFAFQESREAAVTVYTYEYVREGVHAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L V G+G + + +L+ EL +I +N + + PG+ K Sbjct: 60 YGFPTREERNLFAKLLQVSGIGPKGGLAILAAGRPDELARAIEEENEAFLCKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK +L++ + A++AL LGY + + Sbjct: 120 ARQMILDLKGKLGALAAPAA---------ARSAAPLSGALAEAVAALKALGYAEREIEKI 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ ++ Q ++ AL + Sbjct: 171 IPALREE---AMSTEQYVKRALALL 192 >gi|222097866|ref|YP_002531923.1| holliday junction DNA helicase ruva [Bacillus cereus Q1] gi|228917058|ref|ZP_04080617.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228929466|ref|ZP_04092487.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228948135|ref|ZP_04110419.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229093493|ref|ZP_04224596.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus Rock3-42] gi|229123962|ref|ZP_04253154.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus 95/8201] gi|229163369|ref|ZP_04291321.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus R309803] gi|229186660|ref|ZP_04313821.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus BGSC 6E1] gi|229198549|ref|ZP_04325252.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus m1293] gi|221241924|gb|ACM14634.1| holliday junction DNA helicase [Bacillus cereus Q1] gi|228584934|gb|EEK43049.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus m1293] gi|228596919|gb|EEK54578.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus BGSC 6E1] gi|228620150|gb|EEK77024.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus R309803] gi|228659264|gb|EEL14912.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus 95/8201] gi|228689964|gb|EEL43768.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus Rock3-42] gi|228811493|gb|EEM57830.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228830254|gb|EEM75870.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228842586|gb|EEM87675.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 197 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 92/196 (46%), Gaps = 5/196 (2%) Query: 10 EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69 E + +YV+ID G+ Y I+ P + ++ ++R+D + L+GF + +R Sbjct: 2 EYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALYGFKTREER 59 Query: 70 QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 F L V G+G + A+ +L+ ++V++I ++ K + + PG+ K A +++ +LK Sbjct: 60 LLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLK 119 Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189 GK + D+ + + A+ AL LGY + + + V +LK+ Sbjct: 120 GKLADVVPDAFVDLFSDEERFDEKKGSSAELDEALEALRALGYAEREVSRVVPELLKE-- 177 Query: 190 NIADDSQIIRLALRAI 205 Q I+ AL + Sbjct: 178 -SLTTDQYIKKALSLL 192 >gi|86608038|ref|YP_476800.1| Holliday junction DNA helicase RuvA [Synechococcus sp. JA-2-3B'a(2-13)] gi|123738043|sp|Q2JNW8|RUVA_SYNJB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|86556580|gb|ABD01537.1| Holliday junction DNA helicase RuvA [Synechococcus sp. JA-2-3B'a(2-13)] Length = 204 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 49/209 (23%), Positives = 94/209 (44%), Gaps = 11/209 (5%) Query: 1 MIGKIKGNIEGLY---EDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ 57 MI + G++ + + ++VQG+ Y + P R L L +G+ +F +R+ + Sbjct: 1 MIAFLSGHLVAIEWGERSSLTVEVQGIGYRVKAPGRFLKQLPAVGEPVRVFTHLVVRETE 60 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 + L+GF S +R F+ L V GVG + + +L+ ELV++++ +N ++++ PG+ Sbjct: 61 LVLYGFGSPAERDLFVELIKVSGVGPALGLALLNTFGLPELVQAVVTENVRLLSLTPGVG 120 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 K A R+ ELK K + V + AL+ LGY + Sbjct: 121 HKTAQRLALELKTKLAHWRQGMG-----VADQPLAGGPPMPIREEVEMALLALGYSTQEI 175 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ ++ + +R A+ +S Sbjct: 176 QAALQALPTHPRP---TEDWLRDAITYLS 201 >gi|86139156|ref|ZP_01057726.1| Holliday junction DNA helicase RuvA [Roseobacter sp. MED193] gi|85824000|gb|EAQ44205.1| Holliday junction DNA helicase RuvA [Roseobacter sp. MED193] Length = 229 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 118/227 (51%), Gaps = 22/227 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G +E D+VLIDV+GV Y++YC RT+ L +G+ TL+ + +R+D ++L Sbjct: 1 MIGKLTGRLEYRTADHVLIDVRGVGYLVYCSERTMMTLPGVGEPVTLYTDMVVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++++W LL SVQGVGA+V++ +L + + +I L + + G+ K Sbjct: 61 YGFTSLVEKEWHRLLTSVQGVGAKVSLAILGTLGPDGVSRAIALGDWGSVKAAKGVGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP---------------------SF 159 A RI+ +LK KA + ++ + P + Sbjct: 121 AQRIVLDLKDKAPGVMAMGGSLPDAIEGADLEAVVEPVEPAAPKKTARKAASKPSGAAAA 180 Query: 160 AINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 + A+SAL NLGY A +AV + + AD+S +IR ALR ++ Sbjct: 181 SAGALSALGNLGYSPSDAASAVAEAAGENPD-ADESALIRAALRLLA 226 >gi|229032072|ref|ZP_04188054.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus AH1271] gi|228729264|gb|EEL80259.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus AH1271] Length = 197 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 91/196 (46%), Gaps = 5/196 (2%) Query: 10 EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69 + + +YV+ID G+ Y I+ P + +F ++R+D + L+GF + +R Sbjct: 2 DYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVFTYHYVREDIMALYGFKTREER 59 Query: 70 QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 F L V G+G + A+ +L+ ++V++I ++ K + + PG+ K A +++ +LK Sbjct: 60 LLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLK 119 Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189 GK + D+ + A+ AL LGY + + + V +LK+ Sbjct: 120 GKLADVVPDAFVDLFSDTERFDEKKGSSVELDEALEALRALGYAEREVSRVVPELLKE-- 177 Query: 190 NIADDSQIIRLALRAI 205 Q I+ AL + Sbjct: 178 -SLTTDQYIKKALSLL 192 >gi|288801343|ref|ZP_06406797.1| holliday junction DNA helicase RuvA [Prevotella sp. oral taxon 299 str. F0039] gi|288331726|gb|EFC70210.1| holliday junction DNA helicase RuvA [Prevotella sp. oral taxon 299 str. F0039] Length = 204 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 57/209 (27%), Positives = 100/209 (47%), Gaps = 10/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM----RQD 56 MI IKG++ + +I+ GV Y + + T S + + + L+V + R D Sbjct: 1 MIEYIKGDLAEITPALAVIETAGVGYALNISLTTYSAI-QGKEEVKLYVHEALVTGGRDD 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF + +R+ + LL +V GVGA A +LS I+ EL I + +++ + GI Sbjct: 60 SYTLYGFATKQERELYRLLITVSGVGANTARMILSSISPAELCNVIASGDERMLKSVKGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 +K A RI+ +LK K +S + + ++ + A+ AL LG+ Sbjct: 120 GLKTAQRIIVDLKDKILSSGIATEFKVGN----DSNATIDSAVKDEAVGALTMLGFSPAP 175 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + V +LK E + Q+++LAL+ I Sbjct: 176 SAKVVSEILKNEPTLP-VEQVVKLALKQI 203 >gi|256827686|ref|YP_003151645.1| Holliday junction DNA helicase, RuvA subunit [Cryptobacterium curtum DSM 15641] gi|256583829|gb|ACU94963.1| Holliday junction DNA helicase, RuvA subunit [Cryptobacterium curtum DSM 15641] Length = 194 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + D +++DV GV + + ++LS L +G + +R+D + L Sbjct: 1 MIASLKGTLVAREADGIVLDVGGVGFSVGMSTQSLSRLPSVGVTVQIHTYLQVREDALTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S ++ F L SV G+G +VA+ LS T L +I+ + +++IPGI K Sbjct: 61 FGFTSVKEKALFEKLLSVSGIGPKVALSALSSFTPDALTSAIMTNDVTGVSRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL+G D++ +Q + S A+ L+ LG+ +A A Sbjct: 121 AQRIILELQGSL---------DVAEQTSDQMAVPSDTQLHHRALDDLLALGFSSTEAELA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 LK A ++ +++ AL+ + Sbjct: 172 ----LKGAPKDATEASLVQYALKRL 192 >gi|159043653|ref|YP_001532447.1| Holliday junction DNA helicase RuvA [Dinoroseobacter shibae DFL 12] gi|189045752|sp|A8LHP9|RUVA_DINSH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|157911413|gb|ABV92846.1| holliday junction DNA helicase RuvA [Dinoroseobacter shibae DFL 12] Length = 224 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 118/223 (52%), Gaps = 19/223 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G + D++++DV+GV Y++ C RTL+ + G LF E +R+D ++L Sbjct: 1 MIGRLSGVLVYRGRDHIVLDVRGVGYVVQCSERTLAGMPAPGGPVALFTELLVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + L+++W LL SVQGVGA+ +M +LS + + +I L + + + G+ KI Sbjct: 61 YGFPTLLEKEWHRLLTSVQGVGAKASMSILSTLGVDGVGRAIALGDWGALRKAQGVGPKI 120 Query: 121 ASRIMTELKGKAISLSSV-----------------VQQDMSCVNKEQAHICSMPSFAINA 163 A R++ ELK K + ++ + + + + + S S A Sbjct: 121 AQRVVNELKDKGPEVMAMGGTLEAALDGVIEDGMAASEGIEPPSAARPAVPSAASDQAGA 180 Query: 164 ISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 +SALVNLGYGQ +A +AV + + IIR ALR ++ Sbjct: 181 LSALVNLGYGQGEAASAVATAAGEGAVGET--DIIRAALRLLA 221 >gi|301301358|ref|ZP_07207500.1| Holliday junction DNA helicase RuvA [Lactobacillus salivarius ACS-116-V-Col5a] gi|300214787|gb|ADJ79203.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus salivarius CECT 5713] gi|300851018|gb|EFK78760.1| Holliday junction DNA helicase RuvA [Lactobacillus salivarius ACS-116-V-Col5a] Length = 201 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 91/205 (44%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G I + Y+++DV GV Y +Y +FV +R + I L Sbjct: 1 MYEYLRGVITEVTPYYIVVDVNGVGYQVYV-ANPFKYEEDEHVEQKVFVYQAVRDNDISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++Q F+ L V G+G + A+ +L+ L+ +I + + + PGI K Sbjct: 60 YGFKNSSEKQLFLKLLDVSGIGPKSALAILANDDNRGLINAINSDDDGYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + S + ++ + + + + ++ AL LGY + + Sbjct: 120 AKQIILDLKGKLSDVDSDM---LTGQDNLDLDLNASSPYLKESLEALRALGYTKTEVKRI 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + K + +R LR + Sbjct: 177 SKKLEKYDG--KSTDDYLRQGLRLL 199 >gi|94989443|ref|YP_597544.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes MGAS9429] gi|94993332|ref|YP_601431.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes MGAS2096] gi|123080353|sp|Q1JJH3|RUVA_STRPC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|123382245|sp|Q1J9C4|RUVA_STRPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|94542951|gb|ABF33000.1| holliday junction DNA helicase [Streptococcus pyogenes MGAS9429] gi|94546840|gb|ABF36887.1| Holliday junction DNA helicase ruvA [Streptococcus pyogenes MGAS2096] Length = 198 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 91/205 (44%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ YII S + T+++ +R+D L Sbjct: 1 MYDYIKGQLTKITAKYIVVETNGLGYIINV-ANPYSFTDSVNQLVTIYLHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK V+ N + + + AI AL+ LGY + Sbjct: 120 AQQMVLDLAGKF------VEAPQETGNTKARSNKAGNTQLDEAIEALLALGYKATELKK- 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + E Q I+ AL+ + Sbjct: 173 IRAFF--EGTSETAEQYIKSALKLL 195 >gi|19746986|ref|NP_608122.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes MGAS8232] gi|24212371|sp|Q8NZ27|RUVA_STRP8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|19749241|gb|AAL98621.1| putative Holliday junction DNA helicase [Streptococcus pyogenes MGAS8232] Length = 198 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 90/205 (43%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ Y+I S + T+++ +R+D L Sbjct: 1 MYDYIKGQLTKITAKYIVVEANGLGYMINV-ANPYSFTDSVNQLVTIYLHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTKDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK V+ N + + + AI AL+ LGY + Sbjct: 120 AQQMVLDLAGKF------VEAPQETGNTKARSNKAGNTQLDEAIEALLALGYKATELKK- 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + E Q I+ AL+ + Sbjct: 173 IRAFF--EGTSETAEQYIKSALKLL 195 >gi|282860281|ref|ZP_06269351.1| Holliday junction DNA helicase RuvA [Prevotella bivia JCVIHMP010] gi|282586955|gb|EFB92190.1| Holliday junction DNA helicase RuvA [Prevotella bivia JCVIHMP010] Length = 205 Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 64/208 (30%), Positives = 101/208 (48%), Gaps = 7/208 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM---RQDQ 57 MI IKG + L +++ +GV Y I + T S + D E + R D Sbjct: 1 MIEYIKGELAELTPTLAVVEARGVGYAINISLNTYSAIQGKNDIKLYIHEAIVTGGRDDS 60 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 L+GFLS +R + LL +V GVGA A +LS +T +EL I + K++ + GI Sbjct: 61 YTLYGFLSKQERSLYRLLITVSGVGANTARMILSSLTPSELCNVIANGDEKMLKAVKGIG 120 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 +K A RI+ +LK K + D +N A + A+SAL+ LG+ + Sbjct: 121 LKTAQRIIVDLKDKIMQ---SGIADELHINSSSASSNINTAVKDEALSALIMLGFSPAPS 177 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 VVS+L ++ + Q+++LAL+ I Sbjct: 178 AKVVVSILTEQPELP-VEQVVKLALKMI 204 >gi|306836241|ref|ZP_07469223.1| crossover junction ATP-dependent DNA helicase RuvA [Corynebacterium accolens ATCC 49726] gi|304567833|gb|EFM43416.1| crossover junction ATP-dependent DNA helicase RuvA [Corynebacterium accolens ATCC 49726] Length = 202 Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +I+ GV Y +TL L + G+ + +++D + L Sbjct: 1 MIAALRGEVLHIGLDHGVIECSGVGYKFLATAKTLGTL-RRGETAFVLTTLVVKEDALTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF SD DR+ F +LQSV G+G ++A+ LS + A EL +I ++ K + IPG+ ++ Sbjct: 60 YGFTSDDDREMFQVLQSVSGLGPKLALAALSVMGAEELAAAIGGEDVKALQSIPGVGKRM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ELK K + D + + + AL+ LG+ + A Sbjct: 120 AQRLTLELKDKVKRFAGTPAPDAAPEAT-----GAGGPVVDSVTEALLGLGFTEKAARPV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + E AD S ++R AL + Sbjct: 175 VEA-AYAEAPAADTSTLLRAALAQL 198 >gi|253732298|ref|ZP_04866463.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724087|gb|EES92816.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 200 Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 52/204 (25%), Positives = 94/204 (46%), Gaps = 7/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + LY +V+++ GV Y I P + ++ + +R+D L Sbjct: 1 MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKQLDHEVLIHTSLIVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ ++ F+ L V G+G + A+ +L+ T E+ +I +N + + PGI K Sbjct: 60 YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + ++D + + A F A+ AL LGY + + Sbjct: 120 ARQIVLDLKGKVK----ITEEDSDSLLQVDATSTVQDQFVQEAMLALEALGYSKRELAK- 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V L K K + ++ L+ Sbjct: 175 VEKTLNKNK-YDSVDEAVKAGLQL 197 >gi|116872962|ref|YP_849743.1| holliday junction DNA helicase RuvA [Listeria welshimeri serovar 6b str. SLCC5334] gi|123463790|sp|A0AIY2|RUVA_LISW6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|116741840|emb|CAK20964.1| holliday junction DNA helicase RuvA [Listeria welshimeri serovar 6b str. SLCC5334] Length = 201 Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 94/205 (45%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + +Y++++ + Y I S G +F+ H+R+D I L Sbjct: 1 MYDYIKGKVTTITPEYIVVEAGQIGYQI-ITGNPFSFQRLEGSEAQVFLYQHVREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L SV G+G + A+ +++ L+ +I ++ + + P + K Sbjct: 60 FGFQSTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLITAIESEDDVYLTKFPSVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK L+ VV ++ E + + A+ AL LGY + Sbjct: 120 ARQIILDLKGK---LADVVASEIVFKAPENDIVHGLSPQLEEAVLALEALGYSTKELKKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + K+ I+LALR + Sbjct: 177 IPKLSKEN--DLTSDAYIKLALRLM 199 >gi|220910036|ref|YP_002485347.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 7425] gi|219866647|gb|ACL46986.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 7425] Length = 207 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 57/212 (26%), Positives = 95/212 (44%), Gaps = 12/212 (5%) Query: 1 MIGKIKGNIEGL----YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MIG ++G I G+ + +DV GV Y + R ++ L G+ +F +R+D Sbjct: 1 MIGYLQGRIAGVQRGGNRTLLTLDVNGVGYDLQILPRLVNKLPPEGETLQMFTHLQVRED 60 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 Q+ L+GF +R F L SV GVG ++A+ +L + ELV++I+ N++ +++ PG+ Sbjct: 61 QMILYGFAITAERDLFRQLISVSGVGPQLALALLEGMELAELVQAIVSGNTRTLSRTPGV 120 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 K A RI ELK K + + L+ LGY + Sbjct: 121 GSKTAERIALELKTKLAEWRQQSGLTT------VPSAGPIAAVREEVELTLLALGYSSTE 174 Query: 177 ATTAVVSVLKK--EKNIADDSQIIRLALRAIS 206 A+ +V + D IR A+ +S Sbjct: 175 VMQALQAVGENTALAKAGDAEAWIRAAIAWLS 206 >gi|71904448|ref|YP_281251.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes MGAS6180] gi|90135995|sp|Q48QW4|RUVA_STRPM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|71803543|gb|AAX72896.1| holliday junction DNA helicase [Streptococcus pyogenes MGAS6180] Length = 198 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 91/205 (44%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ YII S + T+++ +R+D L Sbjct: 1 MYDYIKGQLTKITAKYIVVETNGLGYIINV-ANPYSFTDSVNQLVTIYLHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK V+ N + + + AI AL+ LGY + Sbjct: 120 AQQMVLDLAGKF------VEAPQETGNTKARSNKAGNTQLDEAIEALLALGYKAAELKK- 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + E Q I+ AL+ + Sbjct: 173 IRAFF--EGTSETAEQYIKSALKLL 195 >gi|297571393|ref|YP_003697167.1| Holliday junction DNA helicase RuvA [Arcanobacterium haemolyticum DSM 20595] gi|296931740|gb|ADH92548.1| Holliday junction DNA helicase RuvA [Arcanobacterium haemolyticum DSM 20595] Length = 199 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 94/205 (45%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +I+V GV + TLS L ++G L +R+D + L Sbjct: 1 MIASLRGIVSAIGITSAVIEVGGVGMSVQATPTTLSTL-RMGAEAHLMTSLIVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F +L + G+G R A+ VL+ +T L +++ +N + ++ GI K Sbjct: 60 YGFGDIDERDVFDILTGISGIGPRTALAVLAVLTPDALRDAVATKNEAALTRVSGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL K + A + + ALVNLG+ + +A A Sbjct: 120 AQRMILELGSKLGPTRGSATASGADTRVVPADA--------DVLEALVNLGWNEREAAPA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V K A ++++R AL+ + Sbjct: 172 VHEATNKMP-GASVAELLRAALQIL 195 >gi|257469281|ref|ZP_05633375.1| Holliday junction DNA helicase ruvA [Fusobacterium ulcerans ATCC 49185] gi|317063528|ref|ZP_07928013.1| holliday junction DNA helicase ruvA [Fusobacterium ulcerans ATCC 49185] gi|313689204|gb|EFS26039.1| holliday junction DNA helicase ruvA [Fusobacterium ulcerans ATCC 49185] Length = 198 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 45/204 (22%), Positives = 94/204 (46%), Gaps = 9/204 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G +E DY+ +DV GV Y + +RT + G+ L++ ++++D +L Sbjct: 1 MYEYLRGKVEYKKPDYLALDVNGVGYKVNISLRTYDFI-SAGEEVKLYIYNYIKEDAFKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GFL + +R F +L V+G+G +A+ V+S + + + + + ++P + K Sbjct: 60 IGFLEERERNLFEMLLGVKGIGVSLALSVMSTFDIDTIRDLVATDDYTNLKRVPKLGEKK 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 + +++ +LK K +L D ++ ISAL LGY + + T Sbjct: 120 SQQLILDLKSKLKTL------DALSIDTRNDDAAKHLMIEEELISALEGLGYSKKEINTL 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + + ++ + I+ L+ Sbjct: 174 ITR--DELRSFKTIEEAIKGVLKK 195 >gi|307326761|ref|ZP_07605953.1| Holliday junction DNA helicase RuvA [Streptomyces violaceusniger Tu 4113] gi|306887524|gb|EFN18518.1| Holliday junction DNA helicase RuvA [Streptomyces violaceusniger Tu 4113] Length = 206 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 57/212 (26%), Positives = 99/212 (46%), Gaps = 15/212 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + D +I+V G+ + C TL+ L ++G L +R+D + L Sbjct: 1 MIAFVSGPVAAVAPDTAVIEVGGIGMALQCTPATLAGL-RVGQQARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ + L ++ + K + +PGI K Sbjct: 60 YGFADDDERQVFELLQTASGVGPRLAQAMLAVHSPDVLRLAVSTGDEKALTAVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + A + P ++ +ALV LGY +A A Sbjct: 120 AQRLLLELKDRLGEPLGSAVPS--------ARSAAAPGWSDQLHTALVGLGYATREADEA 171 Query: 181 VVSVLKKEKNI------ADDSQIIRLALRAIS 206 V +V + + + ++R AL+ ++ Sbjct: 172 VAAVTPQAEEAVAAGGKPQVALLLRAALQTLN 203 >gi|258648476|ref|ZP_05735945.1| holliday junction DNA helicase RuvA [Prevotella tannerae ATCC 51259] gi|260851236|gb|EEX71105.1| holliday junction DNA helicase RuvA [Prevotella tannerae ATCC 51259] Length = 197 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 99/205 (48%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I L ++ GV Y + + T + + + L+V +R+D L Sbjct: 1 MIDYIKGQIGELTPTSCTLETCGVGYELLISLNTYTAIQDRKE-AKLYVYEVIREDAYLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +RQ F LL SV GVG + A +LS + EL I ++N K++ + GI K Sbjct: 60 YGFSTKQERQLFTLLISVSGVGGQTAKVILSSFSPGELANIIQMENVKLLRGVKGIGPKA 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + + ++ A + A+SAL LG+ + Sbjct: 120 AQRIVLDLKDKVVGIEG------GTTVQQGAANAVNANAVAEAVSALTTLGFPPAASQKC 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++L++ N+ QII+ AL+ + Sbjct: 174 VAALLQENPNLP-IEQIIKQALKLL 197 >gi|94991379|ref|YP_599479.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes MGAS10270] gi|123382379|sp|Q1JEH4|RUVA_STRPD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|94544887|gb|ABF34935.1| Holliday junction DNA helicase ruvA [Streptococcus pyogenes MGAS10270] Length = 198 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 93/205 (45%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ Y+I S + T+++ +R+D L Sbjct: 1 MYDYIKGQLTKITAKYIVVEANGLGYMINV-ANPYSFTDSVNQLVTIYLHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK V+ + + + + AI AL+ LGY + Sbjct: 120 AQQMVLDLAGKF------VEAPQETGHTKARSNKAGNTQLDEAIEALLALGYKAKELKK- 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + ++ A Q I+ AL+ + Sbjct: 173 IRAFFEETSETA--EQYIKSALKLL 195 >gi|315303293|ref|ZP_07873928.1| holliday junction DNA helicase RuvA [Listeria ivanovii FSL F6-596] gi|313628340|gb|EFR96838.1| holliday junction DNA helicase RuvA [Listeria ivanovii FSL F6-596] Length = 201 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 95/205 (46%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG I + +Y++++ + Y I S G +F+ H+R+D I L Sbjct: 1 MYDYIKGIITTITPEYIVVETGQIGYQI-ITGNPFSFQHLEGTETQVFLYQHVREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L SV G+G + A+ +++ L+ +I ++ + + P + K Sbjct: 60 FGFQSTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLITAIESEDDVYLTKFPSVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + VV D+ E + + A+ AL LGY + Sbjct: 120 ARQIILDLKGKLV---DVVTSDIVYNTPENDIVSGLAPALEEAVLALEALGYSSRELKKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++K+E I+LAL+ + Sbjct: 177 IPKLVKEE--DLTSDAYIKLALKLM 199 >gi|94987628|ref|YP_595561.1| Holliday junction DNA helicase RuvA [Lawsonia intracellularis PHE/MN1-00] gi|123262079|sp|Q1MP37|RUVA_LAWIP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|94731877|emb|CAJ55240.1| Holliday junction resolvasome, DNA-binding subunit [Lawsonia intracellularis PHE/MN1-00] Length = 199 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 52/206 (25%), Positives = 97/206 (47%), Gaps = 11/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI ++G I E ++ G+ Y ++ T S L G+ ++ +R+D Sbjct: 1 MIAYLEGYIAEFGETSCVVATSSGIGYEVFLTTPTRSTLPNKGEQVRFYICHIVREDIQE 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF + +RQ F++L S+ VGAR A+ +LS +L + +I ++ + ++ GI K Sbjct: 61 LFGFETWDERQTFIVLTSISKVGARTALNMLSTFRPNDLRQCVIEEDIFALTRVSGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A I ELK K + + + S + ++ L LGY +++++ Sbjct: 121 TAQHIFLELKYKLQ---------IDGNSTTSSSPSIGQSLFYDILTGLQGLGYTKEESSV 171 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + SVL+ E ++ D +R L+ + Sbjct: 172 VIKSVLQHEPDL-DVGSALRRCLKQL 196 >gi|254451002|ref|ZP_05064439.1| Holliday junction DNA helicase RuvA [Octadecabacter antarcticus 238] gi|198265408|gb|EDY89678.1| Holliday junction DNA helicase RuvA [Octadecabacter antarcticus 238] Length = 231 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 64/229 (27%), Positives = 116/229 (50%), Gaps = 24/229 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G +E D+VLIDV+GV YI++ R ++ L ++G+ +L+ + +R+D ++L Sbjct: 1 MIGRIAGRLEYRAIDHVLIDVKGVGYIVFVSDRVMATLPRVGEGVSLYTDLLVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++W LL SVQG+GA+ ++ +L + A + SI + + +A G+ K Sbjct: 61 FGFTTLVEKEWHRLLMSVQGIGAKASLAILGTLGADGVSRSIAMGDWAAVATAKGVGPKT 120 Query: 121 ASRIMTELKGK-----------------------AISLSSVVQQDMSCVNKEQAHICSMP 157 A +++ +LK K + + + V++ Sbjct: 121 AKKVILDLKDKAHGVMAMAGTAAGAAPAAGGGASVSADAETDTDMHAVVDRYDGTAAGNG 180 Query: 158 SFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 + +SAL NLGYG A AV + + AD + +IR AL+ ++ Sbjct: 181 AAQSETLSALSNLGYGPSDAAGAVAQAAVEN-DGADTATLIRAALKLLA 228 >gi|260558373|ref|ZP_05830569.1| Holliday junction DNA helicase RuvA [Enterococcus faecium C68] gi|260075547|gb|EEW63853.1| Holliday junction DNA helicase RuvA [Enterococcus faecium C68] Length = 200 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 89/205 (43%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G + + Y++++ + Y I K+ ++V +R+D L Sbjct: 1 MYEYLTGVVTFINPYYIVVETNSIGYQIAL-GNPYRYSSKLNQKIKIYVHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++Q F+ L SV G+G + A+ +++ + L++++ + + + PG+ K Sbjct: 60 YGFDSLEEKQLFLRLVSVSGIGPKSALAIMASEDHSGLIQAVESSDVTYLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK LS + + A+ AL LGY + Sbjct: 120 AQQMILDLKGKFGELSIDTPFSLFDEAN-----TKDATALSEAMEALSALGYSDREIKRV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + KE + + +R AL+ + Sbjct: 175 EKQL--KEVDNQTTDEYLRQALKLM 197 >gi|329848091|ref|ZP_08263119.1| holliday junction DNA helicase RuvA [Asticcacaulis biprosthecum C19] gi|328843154|gb|EGF92723.1| holliday junction DNA helicase RuvA [Asticcacaulis biprosthecum C19] Length = 201 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 112/205 (54%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + + ++ +++ GV YI+ C IRTL+ + K L +++ R+D RL Sbjct: 1 MIGRLRGPLLEVGDEDAVVEAGGVGYIVRCGIRTLAAMPKPDTEVILHIDSQTREDGTRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +RQ F L VQGVG + A+ VL ++ +L +++ + + + G+ K+ Sbjct: 61 YGFLNKDERQAFQALLGVQGVGPKAALAVLDVLSPGQLAQAVAQDDKASVGRANGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELKGKA++ ++ + +A + +++AL+ LG + QA A Sbjct: 121 ALRIVVELKGKALTSATFEPIALKPAEPVKASVNG------ESVAALIGLGISETQARLA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + ++ A +IR AL+ + Sbjct: 175 VEAAIQTLGADAALPAVIRTALKNL 199 >gi|221141089|ref|ZP_03565582.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus str. JKD6009] gi|302751470|gb|ADL65647.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus str. JKD6008] Length = 200 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 50/204 (24%), Positives = 95/204 (46%), Gaps = 7/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + LY +V+++ GV Y I P + S + + +R+D L Sbjct: 1 MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYSFQKHLDHEVLIHTSLIVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ ++ F+ L V G+G + A+ +L+ T E+ +I +N + + PGI K Sbjct: 60 YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + ++D + + A F A+ AL LGY + + Sbjct: 120 ARQIVLDLKGKVK----ITEEDSDSLLQVDATSTVQDQFVQEAMLALEALGYSKRELAKV 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 ++ K + + + ++ L+ Sbjct: 176 EKTLNKNKYD--SVDEAVKAGLQL 197 >gi|49483886|ref|YP_041110.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus MRSA252] gi|257425766|ref|ZP_05602190.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus 55/2053] gi|257428426|ref|ZP_05604824.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus 65-1322] gi|282904222|ref|ZP_06312110.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus C160] gi|282906048|ref|ZP_06313903.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus Btn1260] gi|282908961|ref|ZP_06316779.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911278|ref|ZP_06319080.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus WBG10049] gi|282914447|ref|ZP_06322233.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus M899] gi|282919416|ref|ZP_06327151.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus C427] gi|282924793|ref|ZP_06332459.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus C101] gi|283958402|ref|ZP_06375853.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus A017934/97] gi|293503520|ref|ZP_06667367.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus 58-424] gi|293510539|ref|ZP_06669244.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus M809] gi|293537082|ref|ZP_06671762.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus M1015] gi|295428217|ref|ZP_06820849.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590815|ref|ZP_06949453.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus aureus subsp. aureus MN8] gi|56749557|sp|Q6GG62|RUVA_STAAR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|49242015|emb|CAG40713.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus MRSA252] gi|257271460|gb|EEV03606.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus 55/2053] gi|257275267|gb|EEV06754.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus 65-1322] gi|282313159|gb|EFB43555.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus C101] gi|282317226|gb|EFB47600.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus C427] gi|282321628|gb|EFB51953.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus M899] gi|282324973|gb|EFB55283.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus WBG10049] gi|282327225|gb|EFB57520.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331340|gb|EFB60854.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus Btn1260] gi|282595840|gb|EFC00804.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus C160] gi|283790551|gb|EFC29368.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus A017934/97] gi|290919927|gb|EFD96995.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus M1015] gi|291095186|gb|EFE25451.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus 58-424] gi|291466430|gb|EFF08951.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus M809] gi|295128575|gb|EFG58209.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575701|gb|EFH94417.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus aureus subsp. aureus MN8] gi|312437891|gb|ADQ76962.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus aureus subsp. aureus TCH60] gi|315195545|gb|EFU25932.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus CGS00] Length = 200 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 49/204 (24%), Positives = 94/204 (46%), Gaps = 7/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + LY +V+++ GV Y I P + + + +R+D L Sbjct: 1 MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKHLDHEVLIHTSLIVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ ++ F+ L V G+G + A+ +L+ T E+ +I +N + + PGI K Sbjct: 60 YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + ++D + + A F A+ AL LGY + + Sbjct: 120 ARQIVLDLKGKVK----ITEEDSDSLLQVDATSTEQDQFVQEAMLALEALGYSKRELAKV 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 ++ K + + + ++ L+ Sbjct: 176 EKTLNKNKYD--SVDEAVKAGLQL 197 >gi|317154312|ref|YP_004122360.1| Holliday junction DNA helicase RuvA [Desulfovibrio aespoeensis Aspo-2] gi|316944563|gb|ADU63614.1| Holliday junction DNA helicase RuvA [Desulfovibrio aespoeensis Aspo-2] Length = 203 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 98/207 (47%), Gaps = 9/207 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG ++G + ++ +++ GV Y + P L+ L G +LFV T + + I Sbjct: 1 MIGYLQGTLLAAHDKGLVLLTPGGVGYEVAAPTSVLARLPGRGGEVSLFVHTQVGEKAID 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGFL D F L S+ +G + A+ +LS A L E +++ ++ +PGI K Sbjct: 61 LFGFLESDDLDLFRTLISIDKLGPKKALAILSMFDAEHLREVAYREDATTLSTVPGIGPK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I+ LK K LS ++ A + ++ ++ L LGY +D+ Sbjct: 121 SAKQILWHLKDKVNKLSP-------APSRGSAKVEGPRGEYLDTLAGLKGLGYSEDEVRP 173 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 ++ + E ++ D + IR LR I+ Sbjct: 174 MILEIFDAEPDL-DAAGAIRATLRKIA 199 >gi|306826474|ref|ZP_07459785.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus pyogenes ATCC 10782] gi|304431333|gb|EFM34331.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus pyogenes ATCC 10782] Length = 198 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 91/205 (44%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ Y+I S + T+++ +R+D L Sbjct: 1 MYDYIKGQLTKITAKYIVVEANGLGYMINV-ANPYSFTDSVNQLVTIYLHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK V+ N + + + AI AL+ LGY + Sbjct: 120 AQQMVLDLAGKF------VEAPQETGNTKARSNKAGNTQLDEAIEALLALGYKATELKK- 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + E Q I+ AL+ + Sbjct: 173 IRAFF--EGTSETAEQYIKSALKLL 195 >gi|269941127|emb|CBI49513.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus TW20] Length = 200 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 7/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + LY +V+++ GV Y I P + + + +R+D L Sbjct: 1 MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKHLDHEVLIHTSLIVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF S+ ++ F+ L V G+G + A+ +L+ T E+ +I +N + + PGI K Sbjct: 60 HGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + ++D + + A F A+ AL LGY + + Sbjct: 120 ARQIVLDLKGKVK----ITEEDSDSLLQVDATSTVQDQFVQEAMLALEALGYSKRELAK- 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V L K K + ++ L+ Sbjct: 175 VEKTLNKNK-YDSVDEAVKAGLQL 197 >gi|154493758|ref|ZP_02033078.1| hypothetical protein PARMER_03099 [Parabacteroides merdae ATCC 43184] gi|154086508|gb|EDN85553.1| hypothetical protein PARMER_03099 [Parabacteroides merdae ATCC 43184] Length = 197 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 101/205 (49%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I L ++++ G+ Y + + T + ++V +R+D L Sbjct: 1 MIEYIKGEIVELTPARMILECAGIGYELNISLNTYTFYNGKPTG-KIYVYEVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R+ F++L SV GVG A +LS ++ +EL+ I +N + + GI +K Sbjct: 60 FGFAGKDERELFLMLTSVSGVGPNTARMILSSLSPSELIRVIADKNETALTSVKGIGLKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + + V + + + + A++ALV LG+ + + A Sbjct: 120 AQRILVDLKNKVKPIEGM------TVTGGSSSVAASGAVTEEAVAALVMLGFQKAASQKA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +LK +A Q+I+ ALR + Sbjct: 174 VNLILKGSPALA-VEQVIKTALRML 197 >gi|217964320|ref|YP_002349998.1| holliday junction DNA helicase RuvA [Listeria monocytogenes HCC23] gi|290893935|ref|ZP_06556911.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes FSL J2-071] gi|254766966|sp|B8DHL5|RUVA_LISMH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|217333590|gb|ACK39384.1| holliday junction DNA helicase RuvA [Listeria monocytogenes HCC23] gi|290556473|gb|EFD90011.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes FSL J2-071] gi|307571114|emb|CAR84293.1| holliday junction DNA helicase [Listeria monocytogenes L99] gi|313608655|gb|EFR84502.1| holliday junction DNA helicase RuvA [Listeria monocytogenes FSL F2-208] Length = 201 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 96/205 (46%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + +Y++++ + Y I S G +F+ H+R+D I L Sbjct: 1 MYDYIKGTVTTITPEYIVVEAGQIGYQI-ITGNPFSFQRLEGTEAQVFLYQHVREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L SV G+G + A+ +++ L+ +I ++ + + P + K Sbjct: 60 FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLISAIESEDDVYLTKFPSVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK L+ VV ++ V E + + A+ AL LGY + Sbjct: 120 ARQIILDLKGK---LADVVASEIVYVAPENDMVAGLSPQLEEAVLALEALGYSTRELKKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + K+E I+LAL+ + Sbjct: 177 IPKLAKEE--DLTSDAYIKLALQLM 199 >gi|303249145|ref|ZP_07335385.1| Holliday junction DNA helicase RuvA [Desulfovibrio fructosovorans JJ] gi|302489470|gb|EFL49417.1| Holliday junction DNA helicase RuvA [Desulfovibrio fructosovorans JJ] Length = 202 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 57/207 (27%), Positives = 97/207 (46%), Gaps = 10/207 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG I+G + + Y ++ GV Y + P + L G +LFV T +R+D Sbjct: 1 MIGYIEGRVVVRRDRYAIVLTPGGVGYELELPGPVAASLPAPGGQASLFVHTVVREDAFE 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF + DR+ F +L + +G + A+ +LSR TA +L + + + Q+ GI K Sbjct: 61 LFGFATIEDRETFRILIGITKLGPKTALAILSRYTADDLARIVATADLDALTQVSGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL K ++ + + + ++ L NLGY + A Sbjct: 121 SAQRILIELTYKLEGQAATAAAVTAPI--------PGGGVLADVVAGLTNLGYPEADARR 172 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 +VL E ++ D + +R AL+ ++ Sbjct: 173 VGTAVLDDEPDL-DVAGALRQALKRLA 198 >gi|257431064|ref|ZP_05607443.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus 68-397] gi|257433750|ref|ZP_05610108.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus E1410] gi|257436665|ref|ZP_05612709.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus M876] gi|257278267|gb|EEV08909.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus 68-397] gi|257281843|gb|EEV11980.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus E1410] gi|257284016|gb|EEV14139.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus M876] Length = 203 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 49/204 (24%), Positives = 94/204 (46%), Gaps = 7/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + LY +V+++ GV Y I P + + + +R+D L Sbjct: 4 MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKHLDHEVLIHTSLIVREDAQLL 62 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ ++ F+ L V G+G + A+ +L+ T E+ +I +N + + PGI K Sbjct: 63 YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 122 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + ++D + + A F A+ AL LGY + + Sbjct: 123 ARQIVLDLKGKVK----ITEEDSDSLLQVDATSTEQDQFVQEAMLALEALGYSKRELAKV 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 ++ K + + + ++ L+ Sbjct: 179 EKTLNKNKYD--SVDEAVKAGLQL 200 >gi|312196177|ref|YP_004016238.1| Holliday junction DNA helicase RuvA [Frankia sp. EuI1c] gi|311227513|gb|ADP80368.1| Holliday junction DNA helicase RuvA [Frankia sp. EuI1c] Length = 205 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 51/206 (24%), Positives = 93/206 (45%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + +++V GV ++ C TL+ L +G+ L +R+ ++ L Sbjct: 1 MIASVAGTVLSVSPTAAVVEVGGVGLLVQCTPATLAGL-AVGEPARLATALVVRETELTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R + LQ GVG ++A VL + E+ ++ ++ + ++PG+ K Sbjct: 60 YGFADADERDVYETLQGAAGVGPKLAQAVLGVLAPDEVRRAVADEDLAALTRVPGVGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + + + P AL LGY +A A Sbjct: 120 AQRIVLDLKDKLGPPVGGAPARQAAGGRVLPAPRTAP---EQVTDALGGLGYSTREAEDA 176 Query: 181 VVSVLKKEK-NIADDSQIIRLALRAI 205 V +VL + + D S ++R AL + Sbjct: 177 VAAVLAGDGTDTDDVSAMLRAALAFL 202 >gi|197106547|ref|YP_002131924.1| Holliday junction DNA helicase RuvA [Phenylobacterium zucineum HLK1] gi|229560113|sp|B4R9Z1|RUVA_PHEZH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|196479967|gb|ACG79495.1| Holliday junction DNA helicase RuvA [Phenylobacterium zucineum HLK1] Length = 204 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 110/206 (53%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD-QIR 59 MIG+++G + + E+ LIDV GV Y++ C RTLS L +G+ + VE+ + + Sbjct: 1 MIGRLRGLVAEVGEEDALIDVMGVGYVVRCGSRTLSRLPAVGEETVIHVESVFGEQTGVT 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL +R+ F+ L+++QGVG + A+ VL + EL ++ ++ +A+ G+ K Sbjct: 61 LYGFLGRDERRAFVTLRTIQGVGPKAALAVLDVLAPPELAAAVAREDKAAVARANGVGPK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 +A RI+ ELK K IS V + + S A A++AL+ LG + QA Sbjct: 121 LAQRIVVELKDKPISDGPVAAFHAQATTPQPIKV----SAAGEAVAALMGLGIAEPQARR 176 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 V S + A+ +I+ AL+ + Sbjct: 177 VVESAALRLGEEAEPPALIKAALQEL 202 >gi|282916910|ref|ZP_06324668.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus D139] gi|283770716|ref|ZP_06343608.1| Holliday junction ATP-dependent DNA helicase ruvA [Staphylococcus aureus subsp. aureus H19] gi|282319397|gb|EFB49749.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus D139] gi|283460863|gb|EFC07953.1| Holliday junction ATP-dependent DNA helicase ruvA [Staphylococcus aureus subsp. aureus H19] Length = 200 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 52/204 (25%), Positives = 94/204 (46%), Gaps = 7/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + LY +V+++ GV Y I P + + + +R+D L Sbjct: 1 MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKHLDHEVLIHTSLIVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ ++ F+ L V G+G + A+ +L+ T E+ +I +N + + PGI K Sbjct: 60 YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + ++D + + A F A+ AL LGY + + + Sbjct: 120 ARQIVLDLKGKVK----ITEEDSDSLLQVDATSTVQDQFVQEAMLALEALGYSKRELSK- 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V L K K + ++ L+ Sbjct: 175 VEKTLNKNK-YDSVDEAVKAGLQL 197 >gi|162146622|ref|YP_001601081.1| Holliday junction DNA helicase RuvA [Gluconacetobacter diazotrophicus PAl 5] gi|209543386|ref|YP_002275615.1| Holliday junction DNA helicase RuvA [Gluconacetobacter diazotrophicus PAl 5] gi|189045754|sp|A9HAV7|RUVA_GLUDA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|161785197|emb|CAP54743.1| putative holliday junction ATP-dependent DNA helicase ruvA [Gluconacetobacter diazotrophicus PAl 5] gi|209531063|gb|ACI51000.1| Holliday junction DNA helicase RuvA [Gluconacetobacter diazotrophicus PAl 5] Length = 200 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 101/206 (49%), Gaps = 7/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + D ++DV GV Y+++ RTLS L + D + VET +R+D L Sbjct: 1 MIAHLTGLVGQMESDRCVVDVGGVGYLVHASTRTLSALPRPPDVTRVLVETVVREDAFLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R WF LL +VQGVGA+VA+ +LS ++ +L I + + ++ G+ ++ Sbjct: 61 YGFAEAAERDWFRLLTTVQGVGAKVALAILSALSPGDLAGVIAAADKASLTRVSGVGARL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TEL+ KA + + ++ + + +A Sbjct: 121 AERILTELRDKAGRMPAGPGVTIAAPPASGGVEADALLALAGLG-------FRRAEAQPV 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V +L + AD +IR +LR ++ Sbjct: 174 VGRILARLDGKADLDVVIRESLRELA 199 >gi|57650523|ref|YP_186536.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus COL] gi|82751240|ref|YP_416981.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus RF122] gi|87160146|ref|YP_494293.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195453|ref|YP_500257.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221756|ref|YP_001332578.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus str. Newman] gi|161509868|ref|YP_001575527.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253733107|ref|ZP_04867272.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus TCH130] gi|258450532|ref|ZP_05698594.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A5948] gi|262048631|ref|ZP_06021514.1| holliday junction DNA helicase [Staphylococcus aureus D30] gi|262051292|ref|ZP_06023516.1| holliday junction DNA helicase [Staphylococcus aureus 930918-3] gi|282920191|ref|ZP_06327916.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9765] gi|284024698|ref|ZP_06379096.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus 132] gi|304380761|ref|ZP_07363429.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|71153735|sp|Q5HFC1|RUVA_STAAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|123098028|sp|Q2FXT3|RUVA_STAA8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|123740965|sp|Q2YT88|RUVA_STAAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|123763287|sp|Q2FG85|RUVA_STAA3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|172048928|sp|A6QHI4|RUVA_STAAE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189045775|sp|A8Z2H0|RUVA_STAAT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|57284709|gb|AAW36803.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus COL] gi|82656771|emb|CAI81200.1| Holliday junction DNA helicase [Staphylococcus aureus RF122] gi|87126120|gb|ABD20634.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203011|gb|ABD30821.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374556|dbj|BAF67816.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus str. Newman] gi|160368677|gb|ABX29648.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253728863|gb|EES97592.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus TCH130] gi|257861690|gb|EEV84489.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A5948] gi|259160929|gb|EEW45949.1| holliday junction DNA helicase [Staphylococcus aureus 930918-3] gi|259163278|gb|EEW47837.1| holliday junction DNA helicase [Staphylococcus aureus D30] gi|282594539|gb|EFB99524.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9765] gi|283470918|emb|CAQ50129.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus ST398] gi|298694921|gb|ADI98143.1| Holliday junction DNA helicase [Staphylococcus aureus subsp. aureus ED133] gi|302333315|gb|ADL23508.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus JKD6159] gi|304340698|gb|EFM06630.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315198657|gb|EFU28985.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus subsp. aureus CGS01] gi|320140471|gb|EFW32325.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus MRSA131] gi|320144010|gb|EFW35779.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus MRSA177] gi|323440805|gb|EGA98514.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus O11] gi|323442846|gb|EGB00471.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus O46] gi|329314316|gb|AEB88729.1| Holliday junction ATP-dependent DNA helicase ruvA [Staphylococcus aureus subsp. aureus T0131] gi|329728425|gb|EGG64862.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus 21189] gi|329733154|gb|EGG69491.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus 21193] Length = 200 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 52/204 (25%), Positives = 93/204 (45%), Gaps = 7/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + LY +V+++ GV Y I P + + + +R+D L Sbjct: 1 MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKHLDHEVLIHTSLIVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ ++ F+ L V G+G + A+ +L+ T E+ +I +N + + PGI K Sbjct: 60 YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + ++D + + A F A+ AL LGY + + Sbjct: 120 ARQIVLDLKGKVK----ITEEDSDSLLQVDATSTVQDQFVQEAMLALEALGYSKRELAK- 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V L K K + ++ L+ Sbjct: 175 VEKTLNKNK-YDSVDEAVKAGLQL 197 >gi|296139644|ref|YP_003646887.1| Holliday junction DNA helicase RuvA [Tsukamurella paurometabola DSM 20162] gi|296027778|gb|ADG78548.1| Holliday junction DNA helicase RuvA [Tsukamurella paurometabola DSM 20162] Length = 199 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 99/205 (48%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+V+++ GV Y + T L + G +L +R+D + L Sbjct: 1 MIASLRGEVRHIGLDHVVVECAGVGYKVLVAPATAGALTR-GSEGSLLTSMVVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ F LLQ+VQGVG R+AM ++ + ++ +I + K + IPGI ++ Sbjct: 60 YGFTDSPQQELFHLLQTVQGVGPRLAMAAIAVLEPAQMQSAIASGDIKTLCLIPGIGKRV 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI ELK K + V + A + AL LG+ QA A Sbjct: 120 AERIHIELKDKV-------AAPSTSVGQAGTSNAPSGGTAQQLLDALEGLGFTPKQAEPA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + ++ + S+++R AL+++ Sbjct: 173 VAAAVEAGPDKP-VSELLRDALKSL 196 >gi|15675869|ref|NP_270043.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes M1 GAS] gi|21911339|ref|NP_665607.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes MGAS315] gi|28896713|ref|NP_803063.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes SSI-1] gi|71911615|ref|YP_283165.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes MGAS5005] gi|94995290|ref|YP_603388.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes MGAS10750] gi|54039576|sp|P66752|RUVA_STRP3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|54042204|sp|P66751|RUVA_STRP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|123257497|sp|Q1J492|RUVA_STRPF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|13623103|gb|AAK34764.1| putative Holiday junction DNA helicase [Streptococcus pyogenes M1 GAS] gi|21905554|gb|AAM80410.1| putative Holiday junction DNA helicase [Streptococcus pyogenes MGAS315] gi|28811967|dbj|BAC64896.1| putative Holliday junction DNA helicase [Streptococcus pyogenes SSI-1] gi|71854397|gb|AAZ52420.1| holliday junction DNA helicase [Streptococcus pyogenes MGAS5005] gi|94548798|gb|ABF38844.1| Holliday junction DNA helicase ruvA [Streptococcus pyogenes MGAS10750] Length = 198 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 91/205 (44%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ Y+I S + T+++ +R+D L Sbjct: 1 MYDYIKGQLTKITAKYIVVEANGLGYMINV-ANPYSFTDSVNQLVTIYLHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK V+ + + + + AI AL+ LGY + Sbjct: 120 AQQMVLDLAGKF------VEAPQETGHTKARSNKAGNTQLDEAIEALLALGYKAKELKK- 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + E Q I+ AL+ + Sbjct: 173 IRAFF--EGTSETAEQYIKSALKLL 195 >gi|302335491|ref|YP_003800698.1| Holliday junction DNA helicase subunit RuvA [Olsenella uli DSM 7084] gi|301319331|gb|ADK67818.1| Holliday junction DNA helicase subunit RuvA [Olsenella uli DSM 7084] Length = 209 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 52/207 (25%), Positives = 97/207 (46%), Gaps = 4/207 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDF-CTLFVETHMRQDQIR 59 MI ++ G + + +V++DV G+ Y + T + L +G+ TL +++ + Sbjct: 1 MIVQLTGTLVEVLPTHVIVDVGGIGYELGVSATTAASLPAVGEAGVTLLARMLVKESAVE 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF S +R F L V GVG ++A+ VLS + L ++ Q++ +A +PG+ K Sbjct: 61 LYGFASREERAVFDRLVGVSGVGPKLALAVLSTFSPASLATVVVTQDATRMATVPGVGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQ-QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ EL+ + + MS + S +A SAL+ +G+ +A Sbjct: 121 KAQRLLMELQDVFTRDTELRGLVGMSEPAPRSPLANTAESVQSDATSALLAMGFTPQEAE 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ ++ + I ALR + Sbjct: 181 LALRG--HEDAGALTVEKAISYALRHL 205 >gi|302874957|ref|YP_003843590.1| Holliday junction DNA helicase RuvA [Clostridium cellulovorans 743B] gi|307690425|ref|ZP_07632871.1| Holliday junction DNA helicase RuvA [Clostridium cellulovorans 743B] gi|302577814|gb|ADL51826.1| Holliday junction DNA helicase RuvA [Clostridium cellulovorans 743B] Length = 194 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 100/205 (48%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG +G+ +DY++I+ G+ Y I+ T++ L I ++++ +R+D I L Sbjct: 1 MYEYIKGIYKGIKKDYLIIENNGIGYKIFTSGGTIAALPSIDKEVFIYLKQIVREDFIGL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + + F +L ++ GVG + A+ +LS T L +I + I + PGI K Sbjct: 61 YGFATQEELELFTMLLNINGVGTKAALSLLSIGTVNNLKYAIATSDENFITKAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + + + A+ AL+ LGYG+ +A A Sbjct: 121 AQRIILELKDKLSKEVPL---------SHTSENIITNVYVDEALEALIALGYGEKEAEKA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +V + +II+ L+ + Sbjct: 172 IANV----NHNMSIEEIIKSCLQLL 192 >gi|318075775|ref|ZP_07983107.1| Holliday junction DNA helicase RuvA [Streptomyces sp. SA3_actF] Length = 210 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 52/189 (27%), Positives = 91/189 (48%), Gaps = 6/189 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L +++V G+ + C TLS L +IG+ + +R+D + L Sbjct: 1 MIAFVSGPVAALGPTSAVVEVGGIGMAVQCTPHTLSTL-RIGEQARIATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ ++ L ++ + K + +PGI K Sbjct: 60 YGFADDDERQTFELLQTASGVGPRLAQAMLATLSPDALRLAVSTADEKALTAVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK + + ++ P + +ALV LGY +A A Sbjct: 120 AQKLILELKDRLGQ-----PLGTGTLGAQRRAAAGPPPWTEQLHTALVGLGYQPREAEEA 174 Query: 181 VVSVLKKEK 189 V +V + + Sbjct: 175 VEAVTPQAE 183 >gi|189183542|ref|YP_001937327.1| Holliday junction DNA helicase RuvA [Orientia tsutsugamushi str. Ikeda] gi|229560111|sp|B3CRA9|RUVA_ORITI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189180313|dbj|BAG40093.1| holliday junction DNA helicase RuvA [Orientia tsutsugamushi str. Ikeda] Length = 205 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 119/205 (58%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI K+KG ++ + + Y++ID+ GV Y +Y +TL L + G +LF+ETH+R+D+I Sbjct: 1 MIAKLKGILDSITDSYLIIDINGVGYQVYSSGKTLMKLIKEEGSIVSLFIETHVREDRIH 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGFL + ++ F +LQSV G+G ++A+ +LS +T +L +I QN + I G+ K Sbjct: 61 LFGFLDNTEKVAFNMLQSVSGIGTKMALHILSNLTPHQLQIAISSQNRHQLKAISGVGPK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 + R+M EL+ K +++++ + + + + +AI+AL+ LG + +AT Sbjct: 121 LIDRLMIELRDKVANINTIANN--TSLATLSTDSNTHDNILSDAITALIALGISRAEATQ 178 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + + +I ++++R AL+ Sbjct: 179 ILSDIYALSPSI-SVNELVRTALQR 202 >gi|258424067|ref|ZP_05686949.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9635] gi|294848671|ref|ZP_06789417.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9754] gi|257845688|gb|EEV69720.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9635] gi|294824697|gb|EFG41120.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9754] Length = 203 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 49/204 (24%), Positives = 94/204 (46%), Gaps = 7/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + LY +V+++ GV Y I P + + + +R+D L Sbjct: 4 MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKHLDHEVLIHTSLIVREDAQLL 62 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ ++ F+ L V G+G + A+ +L+ T E+ +I +N + + PGI K Sbjct: 63 YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 122 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + ++D + + A F A+ AL LGY + + Sbjct: 123 ARQIVLDLKGKVK----ITEEDSDSLLQVDATSTVQDQFVQEAMLALEALGYSKRELAKV 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 ++ K + + + ++ L+ Sbjct: 179 EKTLNKNKYD--SVDEAVKAGLQL 200 >gi|46907761|ref|YP_014150.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes serotype 4b str. F2365] gi|47094257|ref|ZP_00231966.1| holliday junction DNA helicase RuvA [Listeria monocytogenes str. 4b H7858] gi|226224134|ref|YP_002758241.1| Holliday junction DNA helicase (ruvA) [Listeria monocytogenes Clip81459] gi|254824408|ref|ZP_05229409.1| holliday junction DNA helicase RuvA [Listeria monocytogenes FSL J1-194] gi|254852157|ref|ZP_05241505.1| holliday junction DNA helicase RuvA [Listeria monocytogenes FSL R2-503] gi|254931468|ref|ZP_05264827.1| holliday junction DNA helicase RuvA [Listeria monocytogenes HPB2262] gi|254992897|ref|ZP_05275087.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes FSL J2-064] gi|255520701|ref|ZP_05387938.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes FSL J1-175] gi|300764800|ref|ZP_07074790.1| holliday junction DNA helicase RuvA [Listeria monocytogenes FSL N1-017] gi|67461453|sp|Q71ZD7|RUVA_LISMF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|259495649|sp|C1KVI0|RUVA_LISMC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|46881030|gb|AAT04327.1| holliday junction DNA helicase RuvA [Listeria monocytogenes serotype 4b str. F2365] gi|47017363|gb|EAL08187.1| holliday junction DNA helicase RuvA [Listeria monocytogenes str. 4b H7858] gi|225876596|emb|CAS05305.1| Putative Holliday junction DNA helicase (ruvA) [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605460|gb|EEW18068.1| holliday junction DNA helicase RuvA [Listeria monocytogenes FSL R2-503] gi|293583020|gb|EFF95052.1| holliday junction DNA helicase RuvA [Listeria monocytogenes HPB2262] gi|293593643|gb|EFG01404.1| holliday junction DNA helicase RuvA [Listeria monocytogenes FSL J1-194] gi|300514476|gb|EFK41533.1| holliday junction DNA helicase RuvA [Listeria monocytogenes FSL N1-017] gi|328474893|gb|EGF45693.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes 220] gi|332311975|gb|EGJ25070.1| Holliday junction ATP-dependent DNA helicase ruvA [Listeria monocytogenes str. Scott A] Length = 201 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 96/205 (46%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + +Y++++ + Y I S G +F+ H+R+D I L Sbjct: 1 MYDYIKGTVTTITPEYIVVEAGQIGYQI-ITGNPFSFQRLEGTEAQVFLYQHVREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L SV G+G + A+ +++ L+ +I ++ + + P + K Sbjct: 60 FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLISAIESEDDVYLTKFPSVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK L+ VV ++ V E + + A+ AL LGY + Sbjct: 120 ARQIILDLKGK---LADVVASEIVYVAPENDMVAGLSPQLEEAVLALEALGYSTRELKKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + K+E I+LAL+ + Sbjct: 177 IPKLSKEE--DLTSDAYIKLALQLM 199 >gi|108799233|ref|YP_639430.1| Holliday junction DNA helicase RuvA [Mycobacterium sp. MCS] gi|119868349|ref|YP_938301.1| Holliday junction DNA helicase motor protein [Mycobacterium sp. KMS] gi|126434891|ref|YP_001070582.1| Holliday junction DNA helicase RuvA [Mycobacterium sp. JLS] gi|123369347|sp|Q1B9R0|RUVA_MYCSS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230569|sp|A3PYW4|RUVA_MYCSJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230570|sp|A1UFA3|RUVA_MYCSK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|108769652|gb|ABG08374.1| Holliday junction DNA helicase subunit RuvA [Mycobacterium sp. MCS] gi|119694438|gb|ABL91511.1| Holliday junction DNA helicase RuvA [Mycobacterium sp. KMS] gi|126234691|gb|ABN98091.1| Holliday junction DNA helicase RuvA [Mycobacterium sp. JLS] Length = 196 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 91/205 (44%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +I+ GV Y + TL+ L + G L +R+D + L Sbjct: 1 MIASVRGEVIDIALDHAVIEAAGVGYKVMATPSTLATL-RRGTESRLVTAMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F L V GVG ++A+ L+ A L +++ + + ++PGI + Sbjct: 60 YGFADADARDLFGTLLGVSGVGPKIALATLAVYDAPTLRQALADGDVTALTRVPGIGKRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K +++ + + ALV LG+ QA A Sbjct: 120 AERMVLELRDKIGPVTTGAG----------VTAVGGHAVRGPVVEALVGLGFAAKQAEEA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 VL + + A S +R AL + Sbjct: 170 CDKVLAADPD-ATTSSALRAALSML 193 >gi|312863970|ref|ZP_07724207.1| Holliday junction DNA helicase RuvA [Streptococcus vestibularis F0396] gi|311100536|gb|EFQ58742.1| Holliday junction DNA helicase RuvA [Streptococcus vestibularis F0396] Length = 196 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 86/205 (41%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++I+ G+ YII S ++ +++ +R D L Sbjct: 1 MYDYIKGTLVKITAKYIVIEANGLGYIITV-ANPYSFSDQLNQTIQVYLHQVIRDDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +++ F+ L SV G+G A+ +++ LV ++ + K + + P I K Sbjct: 60 FGFHTEDEKEVFLKLISVSGIGPTTALAIVAVDDNQGLVAAVDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK L + K A+ AL+ LGY + Sbjct: 120 AQQMVLDLAGKFAEL-------PTETTKTTPSQPEGNHQLDEAMEALLALGYKAAEIKKV 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 E Q I+ AL+ + Sbjct: 173 ---KAFFEGTNETAEQYIKSALKML 194 >gi|229491976|ref|ZP_04385793.1| holliday junction DNA helicase RuvA [Rhodococcus erythropolis SK121] gi|229321108|gb|EEN86912.1| holliday junction DNA helicase RuvA [Rhodococcus erythropolis SK121] Length = 199 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 95/205 (46%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +I+ GV Y + TL L + G LF +R+D + L Sbjct: 1 MIASVRGEVLDIALDHAVIEASGVGYRVNATPVTLGALHR-GSEARLFTTMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + F LLQ+V GVG R+AM L+ + L ++ N + ++PGI + Sbjct: 60 YGFSDTESKDLFSLLQTVSGVGPRLAMATLAVLEPDALRRALSEGNLTALTRVPGIGKRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K ++++ V + S + AL LG+ QA A Sbjct: 120 AERMVVELRDKVDAVATTAGAASGVV--------AGSSIRDQIVEALEGLGFPIKQAEQA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 SVL + A S +R AL + Sbjct: 172 TDSVLAESPE-ATTSVALRSALSLL 195 >gi|300934559|ref|ZP_07149815.1| Holliday junction DNA helicase RuvA [Corynebacterium resistens DSM 45100] Length = 208 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 102/207 (49%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + DYV+++ GV Y + + L + G + +R+D L Sbjct: 1 MIASLRGTVIDKGLDYVVVECSGVGYHCHTTPAIVGTL-ERGTEAFVLTTLVVREDAQTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 + F RQ F+ LQ V GVGARVA+ ++S +T EL ++ ++K + + PG+ ++ Sbjct: 60 YAFTDSDQRQTFLALQKVSGVGARVALAIMSVLTPAELAAAVAEGDAKTLQRAPGVGKRL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LKGK +LSS V + + S ALV LG+ + +A + Sbjct: 120 AERMVVDLKGKLGALSSEVSTPGAP--SPDSPQGLSDSVREQVEEALVGLGFTEAKAAST 177 Query: 181 VVSVLK--KEKNIADDSQIIRLALRAI 205 V + ++ + D S ++R AL I Sbjct: 178 VSQAVARTEDAGLLDASSLLRAALAQI 204 >gi|257455268|ref|ZP_05620503.1| holliday junction DNA helicase RuvA [Enhydrobacter aerosaccus SK60] gi|257447230|gb|EEV22238.1| holliday junction DNA helicase RuvA [Enhydrobacter aerosaccus SK60] Length = 206 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 97/207 (46%), Gaps = 4/207 (1%) Query: 1 MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG I+G + L V++ GV Y I P+ + ++ TL+ +R+D Sbjct: 1 MIGLIQGQVHHLMAPTVVVMTTAGVGYEIEMPLNAFCQV-QLNQSVTLWTHFLVREDAQL 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGFLS DR+ F LL V GVGA++A+ ++S +T EL + ++ + + +IPG+ K Sbjct: 60 LFGFLSHSDREVFRLLLKVNGVGAKMALAMMSTVTVQELHQFVMNNDELALTRIPGVGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELK K L S + + + L+ LGY +A Sbjct: 120 TAQRLIVELKDKIKHLGDTSGFAPSL--PLETDSGNEGIIIAEVEAGLIALGYRDKEAQA 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ + +++ +L+ ++ Sbjct: 178 AIKLAKSAIDSPLTIQNLLKASLKNLA 204 >gi|229135245|ref|ZP_04264043.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus BDRD-ST196] gi|228648223|gb|EEL04260.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus BDRD-ST196] Length = 197 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 91/196 (46%), Gaps = 5/196 (2%) Query: 10 EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69 E + +YV+ID G+ Y I+ P + ++ ++R+D + L+GF + +R Sbjct: 2 EYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALYGFKTREER 59 Query: 70 QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 F L V G+G + A+ +L+ ++V++I ++ K + + PG+ K A +++ +LK Sbjct: 60 LLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLK 119 Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189 GK + D+ + A+ AL LGY + + + V +LK+ Sbjct: 120 GKLADVVPDAFVDLFSDTESFDTKKGSSVELDEALEALRALGYAEREVSRVVPELLKE-- 177 Query: 190 NIADDSQIIRLALRAI 205 Q I+ AL + Sbjct: 178 -SLTTDQYIKKALSLL 192 >gi|260431115|ref|ZP_05785086.1| holliday junction DNA helicase RuvA [Silicibacter lacuscaerulensis ITI-1157] gi|260414943|gb|EEX08202.1| holliday junction DNA helicase RuvA [Silicibacter lacuscaerulensis ITI-1157] Length = 223 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 69/221 (31%), Positives = 120/221 (54%), Gaps = 16/221 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G I+ D++LIDV+GV YI+YC RT++ L +G+ +L+ + +R+D ++L Sbjct: 1 MIGKLTGRIDYRAADHLLIDVRGVGYIVYCSDRTMAALPGVGEAVSLYTDLVVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS ++++W LL SVQGVGA+V++ +L + + +I L + + G+ K Sbjct: 61 YGFLSLVEKEWHRLLCSVQGVGAKVSLAILGALGPDGVSRAIALGDWGAVKAAKGVGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA-------------- 166 A RI+ +LK KA + ++ ++ A + A + A Sbjct: 121 AQRIVLDLKDKAPGVMAMGGTVTEAMDGPVAEVVEPADPAPAPVRAPKPGAGAASAGALS 180 Query: 167 -LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 L NLGYG +A +AV + A ++++IR AL+ ++ Sbjct: 181 ALSNLGYGPSEAASAVAEAAANLPD-AGEAELIRAALKLLA 220 >gi|78187612|ref|YP_375655.1| Holliday junction DNA helicase RuvA [Chlorobium luteolum DSM 273] gi|123743607|sp|Q3B219|RUVA_PELLD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|78167514|gb|ABB24612.1| Holliday junction DNA helicase subunit RuvA [Chlorobium luteolum DSM 273] Length = 200 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 51/202 (25%), Positives = 95/202 (47%), Gaps = 8/202 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G + + + +++V G+ Y T L + G+ L+ +R+D ++L Sbjct: 1 MYAYFRGRVVSVLPEEAVLEVSGIAYRFLISTGTSRSLPQAGNEAILYTHLSVREDALQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ ++Q F LL V GVG ++A+ VLS + E+ E+I+ + + + G+ K Sbjct: 61 YGFSSEEEKQLFRLLLLVSGVGPKLALAVLSGLPVAEVHEAILANAPERLFGVTGVGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ EL+ + + LS +A +AL+ LG+ + A A Sbjct: 121 AARIILELRDRILKLSPPGAA-------ATPAGAVQCGIREDATNALLTLGFSRTAAQQA 173 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 V VL+ +++ AL Sbjct: 174 VAGVLEANPGG-SVEDVVKSAL 194 >gi|299141888|ref|ZP_07035023.1| holliday junction DNA helicase RuvA [Prevotella oris C735] gi|298576739|gb|EFI48610.1| holliday junction DNA helicase RuvA [Prevotella oris C735] Length = 205 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 57/209 (27%), Positives = 104/209 (49%), Gaps = 9/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM----RQD 56 MI IKG + L +++ GV Y + + T S + + L+V + R D Sbjct: 1 MIEYIKGELTELTPALAVVEAAGVGYALNISLTTYSGI-QGKKAVKLYVHEALTTGGRDD 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF++ +R+ + LL +V GVGA A +LS ++ EL +I + K+I + GI Sbjct: 60 SFTLYGFVNKQERELYRLLITVSGVGANTARMMLSSMSPAELCNAIANGDEKMIKAVKGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 +K A R++ +LK K + D V +++ I + A++AL LG+ Sbjct: 120 GLKTAQRVIVDLKDKI---MASGIADELHVGSQKSGIAVNNAVKDEAVAALTMLGFSPAP 176 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 VV++L+K+ ++ Q+++ AL+ + Sbjct: 177 VAKVVVAILQKQADMP-VEQVVKEALKQL 204 >gi|226226039|ref|YP_002760145.1| Holliday junction DNA helicase RuvA [Gemmatimonas aurantiaca T-27] gi|259495644|sp|C1A615|RUVA_GEMAT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226089230|dbj|BAH37675.1| Holliday junction DNA helicase RuvA [Gemmatimonas aurantiaca T-27] Length = 197 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 93/206 (45%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYV-LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI +++G I D V ++ GV Y P+ L G TL +R+D Sbjct: 1 MISQVRGTIMHRELDRVEIMTASGVAYECLIPLSVFESLPSEGQTVTLHTHLVVREDAWH 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +R F L +GVG +A+G+LS +T +V ++ ++ + ++P + K Sbjct: 61 LYGFAHAYERAVFQKLLHAKGVGPALALGILSALTPDRVVRALHEKDVLTLMRVPRVGRK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I+ +L K ++ + +A+ AL+ LGY Q +A Sbjct: 121 KAEQIILDLADKIDAVGPAPATGTAP-----------SPLGDDAVRALIALGYNQTEADR 169 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 AV +V+ + D S ++R AL + Sbjct: 170 AVRAVV-ESGAPKDVSSLVRGALSRL 194 >gi|229062116|ref|ZP_04199441.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus AH603] gi|228717268|gb|EEL68943.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus AH603] Length = 197 Score = 142 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 91/196 (46%), Gaps = 5/196 (2%) Query: 10 EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69 E + +YV+ID G+ Y I+ P + ++ ++R+D + L+GF + +R Sbjct: 2 EYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALYGFKTREER 59 Query: 70 QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 F L V G+G + A+ +L+ ++V++I ++ K + + PG+ K A +++ +LK Sbjct: 60 LLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLK 119 Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189 GK + D+ + A+ AL LGY + + + V +LK+ Sbjct: 120 GKLADVVPDAFVDLFSDTESFDAKKGSSVELDEALEALRALGYAEREVSRVVPELLKE-- 177 Query: 190 NIADDSQIIRLALRAI 205 Q I+ AL + Sbjct: 178 -SLTTDQYIKKALSLL 192 >gi|15618530|ref|NP_224816.1| Holliday junction DNA helicase RuvA [Chlamydophila pneumoniae CWL029] gi|15836152|ref|NP_300676.1| Holliday junction DNA helicase motor protein [Chlamydophila pneumoniae J138] gi|16752420|ref|NP_444679.1| Holliday junction DNA helicase motor protein [Chlamydophila pneumoniae AR39] gi|33241977|ref|NP_876918.1| Holliday junction DNA helicase motor protein [Chlamydophila pneumoniae TW-183] gi|6685955|sp|Q9Z7T4|RUVA_CHLPN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|4376917|gb|AAD18759.1| Holliday Junction Helicase [Chlamydophila pneumoniae CWL029] gi|7189062|gb|AAF38010.1| Holliday junction DNA helicase RuvA [Chlamydophila pneumoniae AR39] gi|8978992|dbj|BAA98827.1| holliday junction helicase [Chlamydophila pneumoniae J138] gi|33236487|gb|AAP98575.1| RuvA [Chlamydophila pneumoniae TW-183] gi|269302404|gb|ACZ32504.1| holliday junction DNA helicase RuvA [Chlamydophila pneumoniae LPCoLN] Length = 207 Score = 142 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 94/205 (45%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIR-TLSCLGKIGDFCTLFVETHMRQDQIR 59 M I+G + ++ ++I+ QG+ Y I R + C+ + +F R+ + Sbjct: 1 MYDYIRGTLTYVHTGAIVIECQGIGYHIAITERWAIECIRALHQDFLVFTHVIFRETEHL 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF S +R+ F +L S G+G ++A+ +L+ + L + ++ + +A + GI K Sbjct: 61 LYGFHSREERECFRILISFSGIGPKLALAILNALPLKVLCSVVRSEDIRALASVSGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A ++M ELK K L + + + + + S I AL LGY + A Sbjct: 121 TAEKLMVELKQKLPDLLPLDSRVET------SQTHTTSSCLEEGIQALAALGYSKIAAER 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + +K + + I+ +AL+ Sbjct: 175 MIAEAIKDLPEGSSLTDILPIALKK 199 >gi|314933806|ref|ZP_07841171.1| holliday junction DNA helicase RuvA [Staphylococcus caprae C87] gi|313653956|gb|EFS17713.1| holliday junction DNA helicase RuvA [Staphylococcus caprae C87] Length = 200 Score = 142 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 99/205 (48%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + L+ +V+++ G+ Y I P + + +F +R+D L Sbjct: 1 MYAYVKGTLTQLFPTHVVVETSGIGYEIQTP-NSYRFQKYLNRDVQIFTSLIVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+S+ ++ F L V G+G + A+ +L+ + + +I +N + Q PGI K Sbjct: 60 YGFISEEEKDMFHSLIKVTGIGPKSALAILAASSPNGVKRAIENENDAYLTQFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + ++D + K + A+ AL LGY + + + Sbjct: 120 ARQIVLDLKGKVT----ITEEDSESLLKVDVNNDEQSQVVKEAMLALEALGYSKRELSK- 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V VL K+ +++ + +++ L+ + Sbjct: 175 VEKVLNKQ-SVSSVDEAVKVGLQTL 198 >gi|281426165|ref|ZP_06257078.1| holliday junction DNA helicase RuvA [Prevotella oris F0302] gi|281399741|gb|EFB30572.1| holliday junction DNA helicase RuvA [Prevotella oris F0302] Length = 205 Score = 142 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 57/209 (27%), Positives = 104/209 (49%), Gaps = 9/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM----RQD 56 MI IKG + L +++ GV Y + + T S + + L+V + R D Sbjct: 1 MIEYIKGELTELTPALAVVEAAGVGYALNISLTTYSGI-QGKKAVKLYVHEALTTGGRDD 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF++ +R+ + LL +V GVGA A +LS ++ EL +I + K+I + GI Sbjct: 60 SFTLYGFVNKQERELYRLLITVSGVGANTACMMLSSMSPAELCNAIANGDEKMIKAVKGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 +K A R++ +LK K + D V +++ I + A++AL LG+ Sbjct: 120 GLKTAQRVIVDLKDKI---MASGIADELHVGSQKSGIAVNNAVKDEAVAALTMLGFSPAP 176 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 VV++L+K+ ++ Q+++ AL+ + Sbjct: 177 VAKVVVAILQKQADMP-VEQVVKEALKQL 204 >gi|99082212|ref|YP_614366.1| Holliday junction DNA helicase RuvA [Ruegeria sp. TM1040] gi|99038492|gb|ABF65104.1| Holliday junction DNA helicase RuvA [Ruegeria sp. TM1040] Length = 229 Score = 142 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 119/227 (52%), Gaps = 22/227 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ D+V+IDV+GV YI+YC RTL+ L +G+ L+ E +R+D ++L Sbjct: 1 MIGKLTGRLDYKTPDHVMIDVRGVGYIVYCSDRTLASLPAVGEAVQLYTELLVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S ++++W LL SVQGVGA+V++ +LS + + +I L + + G+ K Sbjct: 61 FGFTSLVEKEWHRLLTSVQGVGAKVSLAILSALGPEGVSRAIALGDWAAVKAAKGVGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI---------------------CSMPSF 159 A RI+ +LK KA S+ ++ + + + Sbjct: 121 AQRIVLDLKDKAPSVMAMGGTVTEALEGPELDAVVEPAAEAPAKPARKAAPKAPTGAAAA 180 Query: 160 AINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 + A+SAL NLGYG A AV + A ++++IR ALR ++ Sbjct: 181 SAGALSALGNLGYGPSDAAGAVAEAAANNPD-AGEAELIRAALRLLA 226 >gi|118444147|ref|YP_877905.1| Holliday junction DNA helicase RuvA [Clostridium novyi NT] gi|118134603|gb|ABK61647.1| Holliday junction DNA helicase RuvA [Clostridium novyi NT] Length = 215 Score = 142 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 107/204 (52%), Gaps = 7/204 (3%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 IKG GL +DY++++ + Y IY T++ + I + +++E +R+D I L+ Sbjct: 17 FEYIKGTYMGLNKDYIIVESNNIGYKIYTSGNTMAGMPNINEKVKIYIEQIVREDFIGLY 76 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GFL + +R F LL ++ GVGA+ A+ +LS + L +I+ ++ K++ + PGI KIA Sbjct: 77 GFLREDERAMFNLLLTISGVGAKAALSLLSISNVSSLKVAIMTEDYKMLTRAPGIGKKIA 136 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 RI ELK K + + +D ++K AI ALV LG+ Q +A A+ Sbjct: 137 QRITLELKDKIEKIYAEDIEDGENISKLSMDTGRK---YDEAIEALVALGFTQKEAEKAL 193 Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205 ++ QII+ +LR + Sbjct: 194 KNIDINN----TIEQIIKDSLRYL 213 >gi|23335124|ref|ZP_00120362.1| COG0632: Holliday junction resolvasome, DNA-binding subunit [Bifidobacterium longum DJO10A] gi|23465306|ref|NP_695909.1| holliday junction DNA helicase RuvA [Bifidobacterium longum NCC2705] gi|189439315|ref|YP_001954396.1| Holliday junction resolvasome DNA-binding subunit [Bifidobacterium longum DJO10A] gi|227547258|ref|ZP_03977307.1| Holliday junction DNA helicase RuvA [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239621474|ref|ZP_04664505.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium longum subsp. infantis CCUG 52486] gi|44888506|sp|Q8G6B8|RUVA_BIFLO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560004|sp|B3DRX9|RUVA_BIFLD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|23325944|gb|AAN24545.1| probable holliday junction DNA helicase RuvA [Bifidobacterium longum NCC2705] gi|189427750|gb|ACD97898.1| Holliday junction resolvasome DNA-binding subunit [Bifidobacterium longum DJO10A] gi|227212217|gb|EEI80113.1| Holliday junction DNA helicase RuvA [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239515935|gb|EEQ55802.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 208 Score = 142 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 61/210 (29%), Positives = 98/210 (46%), Gaps = 11/210 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G +E + D LIDV GV Y + LS L G +F ++ QD I L Sbjct: 1 MIGMLTGRVESVETDTALIDVGGVGYEVRMSATDLSRLHA-GQDTRVFTYMNLSQDAITL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GFL ++ F+ L V G+G +VA +LS +T ++L +I ++ +A+ PG+ K Sbjct: 60 HGFLDRDAKKTFLQLIKVSGIGPKVAQSLLSTLTPSQLAHAIADNDATALAKAPGLGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELKG S + Q + + + + L++LG+ Q A A Sbjct: 120 AQKIILELKG-----SIDLSQIEGASAQAATSKSPVDTGTEQVVEGLISLGWRQQDAQQA 174 Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205 V + D +++RLAL + Sbjct: 175 VAEACAENDIPTPLATDDVPRVLRLALALM 204 >gi|50915147|ref|YP_061119.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes MGAS10394] gi|139474559|ref|YP_001129275.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes str. Manfredo] gi|68053071|sp|Q5X9H7|RUVA_STRP6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166231446|sp|A2RGV1|RUVA_STRPG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|50904221|gb|AAT87936.1| Holliday junction DNA helicase [Streptococcus pyogenes MGAS10394] gi|134272806|emb|CAM31083.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes str. Manfredo] Length = 198 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 91/205 (44%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ Y+I S + T+++ +R+D L Sbjct: 1 MYDYIKGQLTKITAKYIVVEANGLGYMINV-ANPYSFTDSVNQLVTIYLHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK V+ + + + + AI AL+ LGY + Sbjct: 120 AQQMVLDLAGKF------VEAPQETGHTKARSNKAGNTQLDEAIEALLALGYKATELKK- 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + E Q I+ AL+ + Sbjct: 173 IRAFF--EGTSETAEQYIKSALKLL 195 >gi|111023845|ref|YP_706817.1| Holliday junction DNA helicase motor protein [Rhodococcus jostii RHA1] gi|122955049|sp|Q0S1C7|RUVA_RHOSR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|110823375|gb|ABG98659.1| holliday junction DNA helicase [Rhodococcus jostii RHA1] Length = 200 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 94/205 (45%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +I+ GV Y + TL L + G L +R+D + L Sbjct: 1 MIASVRGEVLEIALDHAVIESAGVGYRVNATPATLGGLQR-GSEARLVTAMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ F LLQ+V GVG R+AM L+ + L ++ N + ++PGI + Sbjct: 60 YGFPDSESKELFGLLQTVSGVGPRLAMATLAVLEPDALRAALAEGNVTALTRVPGIGKRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K +++ S S + ALV LG+ QA A Sbjct: 120 AERMVVELRDKVDAVA-------STSGAVPLGAGGGGSVRDQIVEALVGLGFPAKQAEQA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 SVL + + S +R AL + Sbjct: 173 ADSVLAEAPE-STTSTALRSALSLL 196 >gi|325678965|ref|ZP_08158563.1| Holliday junction DNA helicase RuvA [Ruminococcus albus 8] gi|324109469|gb|EGC03687.1| Holliday junction DNA helicase RuvA [Ruminococcus albus 8] Length = 199 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 49/206 (23%), Positives = 95/206 (46%), Gaps = 9/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +++ GV Y TL + L+ +R++ + L Sbjct: 1 MIYSVRGKLIHTDGEMAVVECGGVGYACKTTFYTLQKIAGE-SEVMLYTYLAVRENDVDL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + + F +L +V GVG + A+ +LS + ++ ++ + K + + GI K Sbjct: 60 FGFSTTEELRCFKMLITVSGVGPKAALSILSSNSPSQFALTVATGDHKSLTKCKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K +++ + V+ M A++AL+ LGY + +A A Sbjct: 120 AQRIVLELKDKIAKENTISVRGGDTVS----AAPVMGGALQEAVTALIVLGYSEGEAAQA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + A ++I+ AL A++ Sbjct: 176 LAGA----DPNATVEELIKKALIALA 197 >gi|322374230|ref|ZP_08048762.1| holliday junction DNA helicase RuvA [Streptococcus sp. C150] gi|321276834|gb|EFX53907.1| holliday junction DNA helicase RuvA [Streptococcus sp. C150] Length = 196 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 88/205 (42%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++I+ G+ YI+ S ++ +++ +R D L Sbjct: 1 MYDYIKGTLVKITAKYIVIEANGLGYIVTV-ANPYSFSDQMNQTIQVYLHQVIRDDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +++ F+ L SV G+G A+ +++ LV ++ + K + + P I K Sbjct: 60 FGFHTEDEKEVFLKLISVSGIGPTTALAIVAVDDNQGLVAAVDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK L S K + + A+ AL+ LGY + Sbjct: 120 AQQMVLDLAGKFAEL-------PSETTKTTPNQPAGNHQLDEAMEALLALGYKATELKKV 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + Q I+ AL+ + Sbjct: 173 ---KAFFDGTNETAEQYIKSALKML 194 >gi|118467715|ref|YP_887263.1| Holliday junction DNA helicase RuvA [Mycobacterium smegmatis str. MC2 155] gi|166230568|sp|A0QWH5|RUVA_MYCS2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|118169002|gb|ABK69898.1| holliday junction DNA helicase RuvA [Mycobacterium smegmatis str. MC2 155] Length = 195 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 90/205 (43%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +I+ GV Y + TL+ L + G L +R+D + L Sbjct: 1 MIASVRGEVIDIALDHAVIEAAGVGYKVMATPSTLATL-RRGTEARLITAMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ R F+ L V GVG ++A+ L+ L +++ + + ++PGI + Sbjct: 60 YGFVDGDARDLFLTLLGVSGVGPKIALATLAVYDPQALRQALADGDVTALTRVPGIGKRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K V+ + + ALV LG+ QA A Sbjct: 120 AERMVLELRDKI-----------GPVSAGGGAAVGGHAIRGPVVEALVGLGFAAKQAEEA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 VL + A S +R AL + Sbjct: 169 TDKVLANDPE-ATTSSALRAALSML 192 >gi|158336024|ref|YP_001517198.1| Holliday junction DNA helicase RuvA [Acaryochloris marina MBIC11017] gi|189045739|sp|B0CAE7|RUVA_ACAM1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|158306265|gb|ABW27882.1| holliday junction DNA helicase RuvA [Acaryochloris marina MBIC11017] Length = 208 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 55/213 (25%), Positives = 96/213 (45%), Gaps = 13/213 (6%) Query: 1 MIGKIKGNIEGLYEDY-----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55 MIG ++G + L + + +DV V Y +Y P R L + +F +R+ Sbjct: 1 MIGFLQGYVVSLQQTSTHRTLLTLDVNQVGYDLYVPSRIRQHLPPDQEQMRVFTHLQVRE 60 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 DQ+ LFGF +R F L +V G+G ++A+ ++ + +LV++I+ N+K++ + PG Sbjct: 61 DQMVLFGFAVVAERDLFRQLIAVSGIGPQLALALIDTLGLQDLVQAIVNSNTKMLVKTPG 120 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 + K A RI EL+ K K + S + L+ LGY Sbjct: 121 VGAKTAERIALELRSKLAEWRDQAGL------KTLPSAGPIDSVQEDVEMTLLALGYTSQ 174 Query: 176 QATTAVVSVLKK--EKNIADDSQIIRLALRAIS 206 + A+ +V + +D IR A+ +S Sbjct: 175 EVMRALQAVGQNTALAKNSDTEAWIREAIAWLS 207 >gi|313890377|ref|ZP_07824008.1| Holliday junction DNA helicase RuvA [Streptococcus pseudoporcinus SPIN 20026] gi|313121220|gb|EFR44328.1| Holliday junction DNA helicase RuvA [Streptococcus pseudoporcinus SPIN 20026] Length = 197 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 94/205 (45%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++V G+ YIIY S + T+++ +R+D L Sbjct: 1 MFDYIKGQLTKITAKYIVVEVNGLGYIIYV-ANPYSFTDSVNQNVTVYLHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +D ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTDDEKDVFLKLISVSGIGPMTALAIVAVDDNQGLVTAIDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK + + ++ + AI AL+ LGY + Sbjct: 120 AQQMILDLAGKFV-------DNPEPGQQQSQAKRNSNHQLDEAIEALLALGYKATELKK- 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + + A Q I+ AL+ + Sbjct: 172 IRAFFEGTEETA--EQYIKSALKML 194 >gi|229076052|ref|ZP_04209023.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus Rock4-18] gi|229098895|ref|ZP_04229831.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus Rock3-29] gi|229105059|ref|ZP_04235711.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus Rock3-28] gi|229117921|ref|ZP_04247283.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus Rock1-3] gi|228665578|gb|EEL21058.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus Rock1-3] gi|228678369|gb|EEL32594.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus Rock3-28] gi|228684568|gb|EEL38510.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus Rock3-29] gi|228707086|gb|EEL59288.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus Rock4-18] Length = 197 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 91/196 (46%), Gaps = 5/196 (2%) Query: 10 EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69 E + +YV+ID G+ Y I+ P + ++ ++R+D + L+GF + +R Sbjct: 2 EYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALYGFKTREER 59 Query: 70 QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 F L V G+G + A+ +L+ ++V++I ++ K + + PG+ K A +++ +LK Sbjct: 60 LLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLK 119 Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189 GK + D+ + A+ AL LGY + + + V +LK+ Sbjct: 120 GKLADVVPDAFVDLFSDVESFDEKKGSSVELDEALEALRALGYAEREVSRVVPELLKE-- 177 Query: 190 NIADDSQIIRLALRAI 205 Q I+ AL + Sbjct: 178 -SLTTDQYIKKALSLL 192 >gi|281355312|ref|ZP_06241806.1| Holliday junction DNA helicase RuvA [Victivallis vadensis ATCC BAA-548] gi|281318192|gb|EFB02212.1| Holliday junction DNA helicase RuvA [Victivallis vadensis ATCC BAA-548] Length = 203 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 52/207 (25%), Positives = 98/207 (47%), Gaps = 7/207 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + +IDV GV Y P+ T L + G+ L + T +R+D I L Sbjct: 1 MIARLTGILAESSFSGCIIDVGGVGYEALIPLSTFDKLPQPGNKVELHIFTQVREDAITL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++ F L +V G+G ++A+ VLS + + +I + K +++I G+ + Sbjct: 61 FGFATPEEKKLFQQLINVSGIGGKIALSVLSSMPVSGFCSAIASGDIKSLSRISGVGKRT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K S++ V A + A A AL LG+ +D Sbjct: 121 AERMVVELRDKLGSVAG------GSVFVPDAEQGGELTAAAEAALALEQLGFKRDAIDKV 174 Query: 181 VVSVLKKEKNIA-DDSQIIRLALRAIS 206 + ++L + +++R + ++ Sbjct: 175 LKTLLAELPKSEHTTDKLLRQGIIKLN 201 >gi|16803573|ref|NP_465058.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes EGD-e] gi|224499806|ref|ZP_03668155.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes Finland 1988] gi|224501527|ref|ZP_03669834.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes FSL R2-561] gi|254828233|ref|ZP_05232920.1| ruvA [Listeria monocytogenes FSL N3-165] gi|254829708|ref|ZP_05234363.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes 10403S] gi|284801923|ref|YP_003413788.1| hypothetical protein LM5578_1678 [Listeria monocytogenes 08-5578] gi|284995065|ref|YP_003416833.1| hypothetical protein LM5923_1630 [Listeria monocytogenes 08-5923] gi|20455246|sp|Q8Y6Z7|RUVA_LISMO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|16410962|emb|CAC99611.1| ruvA [Listeria monocytogenes EGD-e] gi|258600621|gb|EEW13946.1| ruvA [Listeria monocytogenes FSL N3-165] gi|284057485|gb|ADB68426.1| hypothetical protein LM5578_1678 [Listeria monocytogenes 08-5578] gi|284060532|gb|ADB71471.1| hypothetical protein LM5923_1630 [Listeria monocytogenes 08-5923] Length = 201 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + +Y++++ + Y I S G +F+ H+R+D I L Sbjct: 1 MYDYIKGTVTTITPEYIVVEAGQIGYQI-ITGNPFSFQRLEGTEAQVFLYQHVREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L SV G+G + A+ +++ L+ +I ++ + + P + K Sbjct: 60 FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLISAIESEDDVYLTKFPSVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK L+ VV ++ V E + + A+ AL LGY + Sbjct: 120 ARQIILDLKGK---LADVVASEIVYVAPENDMVAGLSPQLEEAVLALEALGYSTRELKKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + K+ I+LAL+ + Sbjct: 177 IPKLAKEA--DLTSDAYIKLALQLM 199 >gi|315282450|ref|ZP_07870861.1| holliday junction DNA helicase RuvA [Listeria marthii FSL S4-120] gi|313613902|gb|EFR87635.1| holliday junction DNA helicase RuvA [Listeria marthii FSL S4-120] Length = 201 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 93/205 (45%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + +Y++++ + Y I S G +F+ H+R+D I L Sbjct: 1 MYDYIKGTVTTITPEYIVVEAGQIGYQI-ITGNPFSFQRLEGTDAQVFLYQHVREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L SV G+G + A+ +++ L+ +I ++ + + P + K Sbjct: 60 FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLITAIESEDDVYLTKFPSVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK L+ VV ++ + + A+ AL LGY + Sbjct: 120 ARQIILDLKGK---LADVVASEIVFTAPGNDIVAGLSPQLEEAVLALEALGYSTRELKKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + K+ I+LAL+ + Sbjct: 177 IPKLAKE--TDLTSDAYIKLALQLM 199 >gi|148284809|ref|YP_001248899.1| Holliday junction DNA helicase motor protein [Orientia tsutsugamushi str. Boryong] gi|166230578|sp|A5CEJ4|RUVA_ORITB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|146740248|emb|CAM80579.1| Holliday junction DNA helicase [Orientia tsutsugamushi str. Boryong] Length = 205 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 119/205 (58%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI K+KG ++ + + Y++ID+ GV Y +Y +TL L + G +LF+ETH+R+D+I Sbjct: 1 MIAKLKGILDSITDSYLIIDINGVGYQVYSSGKTLMKLIKEEGSIVSLFIETHVREDRIH 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGFL + ++ F +LQSV G+G ++A+ +LS +T +L +I QN + I G+ K Sbjct: 61 LFGFLDNTEKVAFNMLQSVSGIGTKMALHILSNLTPHQLQIAISSQNRHQLKAISGVGPK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 + R+M EL+ K +++++ + ++ + +AI+AL+ LG + +AT Sbjct: 121 LIDRLMIELRDKVANINTIANNTSLAILSTDSNT--HDNILSDAITALIALGISRAEATQ 178 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + + +I ++++R AL+ Sbjct: 179 ILSDIYALFPSI-SVNELVRTALQR 202 >gi|229019645|ref|ZP_04176455.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus AH1273] gi|229025883|ref|ZP_04182279.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus AH1272] gi|228735435|gb|EEL86034.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus AH1272] gi|228741648|gb|EEL91838.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus cereus AH1273] Length = 197 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 91/196 (46%), Gaps = 5/196 (2%) Query: 10 EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69 E + +YV+ID G+ Y I+ P + ++ ++R+D + L+GF + +R Sbjct: 2 EYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALYGFKTREER 59 Query: 70 QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 F L V G+G + A+ +L+ ++V++I ++ K + + PG+ K A +++ +LK Sbjct: 60 LLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVGKKTARQMILDLK 119 Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189 GK + D+ + A+ AL LGY + + + V +LK+ Sbjct: 120 GKLADVVPDAFVDLFSDVESFDQKKGSSVELDEALEALRALGYAEREVSRVVPELLKE-- 177 Query: 190 NIADDSQIIRLALRAI 205 Q I+ AL + Sbjct: 178 -SLTTDQYIKKALSLL 192 >gi|116670849|ref|YP_831782.1| Holliday junction DNA helicase RuvA [Arthrobacter sp. FB24] gi|166230514|sp|A0JXB2|RUVA_ARTS2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|116610958|gb|ABK03682.1| Holliday junction DNA helicase subunit RuvA [Arthrobacter sp. FB24] Length = 214 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 55/208 (26%), Positives = 98/208 (47%), Gaps = 12/208 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +ID+ G + +TLS L + G+ LF +R+D + L Sbjct: 1 MISFLRGTVAHVGLSSAVIDLNGAGMSVNATPQTLSGL-RTGEEGKLFTSLIVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF SD +R+ F +L SV GVG R+A+ VL+ + + + K ++PGI K+ Sbjct: 60 FGFSSDDEREVFDVLLSVSGVGPRLALAVLAVHDPEAIRVAAHTGDGKAFTKVPGIGPKV 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL GK + + + ++A+ +LG+ + AT++ Sbjct: 120 AGRIVLELAGKLV--------PHGTGAAAAPAAAASAPWKPQVVAAMTSLGWSEKDATSS 171 Query: 181 VVSVLKKEKNIA---DDSQIIRLALRAI 205 + L + ++I+R LR + Sbjct: 172 IDKALSDSPELEAGGQVAEILRATLRWL 199 >gi|113952944|ref|YP_730832.1| Holliday junction DNA helicase RuvA [Synechococcus sp. CC9311] gi|123031696|sp|Q0I9P0|RUVA_SYNS3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|113880295|gb|ABI45253.1| Holliday junction DNA helicase RuvA [Synechococcus sp. CC9311] Length = 219 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 56/216 (25%), Positives = 96/216 (44%), Gaps = 11/216 (5%) Query: 1 MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MIG ++G + ++I GV Y + R L L G CT+++ R D Sbjct: 1 MIGWLRGERIEHWSQGGRQGLVIACAGVGYEVQLASRYLQPLSA-GATCTVWIHQVQRDD 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 LFGF +R F +L SV G+G +V + +L +A EL+E+II + + + Q G+ Sbjct: 60 GSSLFGFPDRRERDLFRVLISVNGIGPQVGLALLESCSAAELIEAIIDGDLRRLTQAQGV 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVN----KEQAHICSMPSFAINAISALVNLGY 172 + A R+ EL+ + + S+ D S ++ + + P + L LGY Sbjct: 120 GKRTAERLAVELRDRLGAWSAEKNSDHSDLSLVDRSDLKSLPIEPDPLQDLQLTLSTLGY 179 Query: 173 GQDQATTAVVSVLKKE--KNIADDSQIIRLALRAIS 206 + A+ +V E D +R +LR ++ Sbjct: 180 EDLEIRRAMRAVATGEEVPAANDGDGWLRASLRWLN 215 >gi|317057206|ref|YP_004105673.1| Holliday junction DNA helicase RuvA [Ruminococcus albus 7] gi|315449475|gb|ADU23039.1| Holliday junction DNA helicase RuvA [Ruminococcus albus 7] Length = 199 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 52/206 (25%), Positives = 95/206 (46%), Gaps = 9/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +++ GV Y TL + TL+ +R++ + L Sbjct: 1 MIYSVRGKLIHTESELAVVECSGVGYACKTTFYTLQKIAGE-SEVTLYTYLAVRENDVDL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S + + F +L +V GVG + A+ +LS T ++ ++ + K + + GI K Sbjct: 60 FGFSSQEELRCFKMLITVSGVGPKAALSILSSNTPSQFALTVATGDFKSLTKSKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K +++ + + A AI+ALV LGY + +A A Sbjct: 120 AQRIVLELKDKIAKENTISVRGGETI----ASAVPRGGALDEAITALVVLGYSEGEAAQA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + A ++I+ AL ++ Sbjct: 176 LAGA----EPTATVEELIKTALVRLA 197 >gi|184154991|ref|YP_001843331.1| holliday junction DNA helicase RuvA [Lactobacillus fermentum IFO 3956] gi|227514529|ref|ZP_03944578.1| crossover junction endoribonuclease subunit A [Lactobacillus fermentum ATCC 14931] gi|260663386|ref|ZP_05864277.1| Holliday junction DNA helicase RuvA [Lactobacillus fermentum 28-3-CHN] gi|229560093|sp|B2GB19|RUVA_LACF3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|183226335|dbj|BAG26851.1| holliday junction DNA helicase RuvA [Lactobacillus fermentum IFO 3956] gi|227087086|gb|EEI22398.1| crossover junction endoribonuclease subunit A [Lactobacillus fermentum ATCC 14931] gi|260552238|gb|EEX25290.1| Holliday junction DNA helicase RuvA [Lactobacillus fermentum 28-3-CHN] Length = 200 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 50/206 (24%), Positives = 92/206 (44%), Gaps = 7/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G I + D++++DV GV Y + + +F+ +++D I L Sbjct: 1 MFEYLTGLITMVSPDFIVVDVNGVGYRVAV-ANPYAYQEDDQQAVQVFIYQAVKEDAITL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++ F L V G+G + A+ +L+ L+++I + K +++ PGI K Sbjct: 60 FGFATQAEKRLFTQLIGVSGIGPKSALAILATPDHQGLIDAIQNGDDKYLSKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ ELK K +++ VQ D + + A +LGY Q Sbjct: 120 ASRIIIELKDKVVAVQDEVQLDFTAPGPLGPSAALQDALAAL-----ESLGYTTKQVER- 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V L+ + + + L+ +S Sbjct: 174 VQKQLEGLQGELSTNDYLSQGLKLLS 199 >gi|239939964|ref|ZP_04691901.1| Holliday junction DNA helicase RuvA [Streptomyces roseosporus NRRL 15998] gi|239986448|ref|ZP_04707112.1| Holliday junction DNA helicase RuvA [Streptomyces roseosporus NRRL 11379] gi|291443395|ref|ZP_06582785.1| holliday junction ATP-dependent DNA helicase ruvA [Streptomyces roseosporus NRRL 15998] gi|291346342|gb|EFE73246.1| holliday junction ATP-dependent DNA helicase ruvA [Streptomyces roseosporus NRRL 15998] Length = 208 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 53/212 (25%), Positives = 95/212 (44%), Gaps = 13/212 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L +I+V G+ + C TL+ L ++G L +R+D + L Sbjct: 1 MIAFVSGPVAALAPTTAVIEVGGIGMAVQCTPHTLADL-RVGKEARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ + L ++ + K + + GI K Sbjct: 60 YGFRDDDERQVFELLQTASGVGPRLAQAMLATHSPDALRLAVSTGDEKALTAVSGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK + + + + ++ + +AL+ LGY +A A Sbjct: 120 AQKLLLELKDRLG------EPVGAHIGQQGIGTPVTAGWRDQLQAALIGLGYATREADEA 173 Query: 181 VV------SVLKKEKNIADDSQIIRLALRAIS 206 V E Q++R AL+ ++ Sbjct: 174 VNAVAPQAEAAAAEGTAPPVPQLLRAALQTLN 205 >gi|313886562|ref|ZP_07820276.1| Holliday junction DNA helicase RuvA [Porphyromonas asaccharolytica PR426713P-I] gi|312923972|gb|EFR34767.1| Holliday junction DNA helicase RuvA [Porphyromonas asaccharolytica PR426713P-I] Length = 202 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 53/208 (25%), Positives = 87/208 (41%), Gaps = 9/208 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFC---TLFVETHMRQDQ 57 MI ++G I+ L +D GV Y + + T L + E + + Sbjct: 1 MIAYLRGTIDTLTPTNAYVDCSGVGYDVNISLSTYDTLHGLEREAPVRLWITEVMRQGEV 60 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 L+GF + ++ F L +V GVG A +LS + EL E I + K + + GI Sbjct: 61 CDLYGFYTREEQALFTKLITVSGVGPATARVILSSLAPLELAEVIESGDDKRLKMVKGIG 120 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 +K A RI+ +LKGK + + + A A AISAL LG+ + Sbjct: 121 LKTAQRIIVDLKGKLPETLTDRDDVTAGIGSRAAR-----EVAEEAISALKMLGFAEVNV 175 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 V ++ + + Q+I+ AL + Sbjct: 176 RKVVKQIMSVKPDTP-VEQVIKQALAKL 202 >gi|296454195|ref|YP_003661338.1| Holliday junction DNA helicase RuvA [Bifidobacterium longum subsp. longum JDM301] gi|312132689|ref|YP_004000028.1| ruva [Bifidobacterium longum subsp. longum BBMN68] gi|317483238|ref|ZP_07942233.1| Holliday junction DNA helicase RuvA [Bifidobacterium sp. 12_1_47BFAA] gi|322689208|ref|YP_004208942.1| holliday junction DNA helicase RuvA [Bifidobacterium longum subsp. infantis 157F] gi|322691274|ref|YP_004220844.1| holliday junction DNA helicase RuvA [Bifidobacterium longum subsp. longum JCM 1217] gi|291516874|emb|CBK70490.1| Holliday junction DNA helicase subunit RuvA [Bifidobacterium longum subsp. longum F8] gi|296183626|gb|ADH00508.1| Holliday junction DNA helicase RuvA [Bifidobacterium longum subsp. longum JDM301] gi|311773647|gb|ADQ03135.1| RuvA [Bifidobacterium longum subsp. longum BBMN68] gi|316915307|gb|EFV36734.1| Holliday junction DNA helicase RuvA [Bifidobacterium sp. 12_1_47BFAA] gi|320456130|dbj|BAJ66752.1| holliday junction DNA helicase RuvA [Bifidobacterium longum subsp. longum JCM 1217] gi|320460544|dbj|BAJ71164.1| holliday junction DNA helicase RuvA [Bifidobacterium longum subsp. infantis 157F] Length = 208 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 61/210 (29%), Positives = 98/210 (46%), Gaps = 11/210 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G +E + D LIDV GV Y + LS L G +F ++ QD I L Sbjct: 1 MIGMLTGRVESVETDTALIDVGGVGYEVRMSATDLSRLHA-GQDTRVFTYMNLSQDAITL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GFL ++ F+ L V G+G +VA +LS +T ++L +I ++ +A+ PG+ K Sbjct: 60 HGFLDRDAKKTFLQLIKVSGIGPKVAQSLLSTLTPSQLAHAIADNDATALAKAPGLGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELKG S + Q + + + + L++LG+ Q A A Sbjct: 120 AQKIILELKG-----SIDLSQIEGASAQAAISKSPVDTGTEQVVEGLISLGWRQQDAQQA 174 Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205 V + D +++RLAL + Sbjct: 175 VAEACAENDIPTPLATDDVPRVLRLALALM 204 >gi|220932069|ref|YP_002508977.1| Holliday junction DNA helicase RuvA [Halothermothrix orenii H 168] gi|254766964|sp|B8CXG3|RUVA_HALOH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|219993379|gb|ACL69982.1| Holliday junction DNA helicase RuvA [Halothermothrix orenii H 168] Length = 194 Score = 141 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 16/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG +KGN+ E+ V+++ GV Y + P L +G+ LFV T++R+D + L Sbjct: 1 MIGYLKGNVIWKAENKVILETGGVGYRVLVPSTV--RLKPVGEKLELFVYTYVREDSLDL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F L SV G+G R A+ +LS ++ + +E+I+ + ++ Q+ GI K Sbjct: 59 YGFKTMEERELFETLLSVSGIGPRAAINILSSLSYKKFIEAILTEKVSILKQVSGIGPKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK +S ++ + + AL +LGY + + A Sbjct: 119 AKRLILELKGKLKDMSGDFEEPL------------PDNRNTELSDALASLGYSELEIEEA 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + KN + I+ AL + Sbjct: 167 LSNA--DIKNNGSLEENIKKALGYL 189 >gi|56808549|ref|ZP_00366283.1| COG0632: Holliday junction resolvasome, DNA-binding subunit [Streptococcus pyogenes M49 591] Length = 198 Score = 141 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 91/205 (44%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ Y+I S + T+++ +R+D L Sbjct: 1 MYDYIKGQLTKITAKYIVVEANGLGYMINV-ANPYSFTDSVNQLVTIYLHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK V+ + + + + AI AL+ LGY + Sbjct: 120 AQQMVLDLAGKF------VEAPQETGHTKARSNKAGNTQLDEAIEALLALGYTATELKK- 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + E Q I+ AL+ + Sbjct: 173 IRAFF--EGTSETAEQYIKSALKLL 195 >gi|15924632|ref|NP_372166.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus Mu50] gi|15927222|ref|NP_374755.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus N315] gi|21283321|ref|NP_646409.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus MW2] gi|49486475|ref|YP_043696.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus MSSA476] gi|148268122|ref|YP_001247065.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus JH9] gi|150394190|ref|YP_001316865.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus JH1] gi|156979960|ref|YP_001442219.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus Mu3] gi|253317207|ref|ZP_04840420.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006427|ref|ZP_05145028.2| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus Mu50-omega] gi|258453755|ref|ZP_05701730.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A5937] gi|269203267|ref|YP_003282536.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus ED98] gi|282893146|ref|ZP_06301380.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8117] gi|282928277|ref|ZP_06335882.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A10102] gi|296275927|ref|ZP_06858434.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus MR1] gi|297207637|ref|ZP_06924072.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911720|ref|ZP_07129163.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus aureus subsp. aureus TCH70] gi|54039574|sp|P66749|RUVA_STAAN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|54039575|sp|P66750|RUVA_STAAW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|54042203|sp|P66748|RUVA_STAAM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|56749510|sp|Q6G8S7|RUVA_STAAS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166200268|sp|A7X358|RUVA_STAA1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189045773|sp|A6U2B0|RUVA_STAA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189045774|sp|A5ITG6|RUVA_STAA9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|13701440|dbj|BAB42734.1| holliday junction DNA helicase [Staphylococcus aureus subsp. aureus N315] gi|14247414|dbj|BAB57804.1| holliday junction DNA helicase [Staphylococcus aureus subsp. aureus Mu50] gi|21204761|dbj|BAB95457.1| holliday junction DNA helicase [Staphylococcus aureus subsp. aureus MW2] gi|49244918|emb|CAG43379.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus MSSA476] gi|147741191|gb|ABQ49489.1| Holliday junction DNA helicase subunit RuvA [Staphylococcus aureus subsp. aureus JH9] gi|149946642|gb|ABR52578.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus JH1] gi|156722095|dbj|BAF78512.1| holliday junction DNA helicase [Staphylococcus aureus subsp. aureus Mu3] gi|257864075|gb|EEV86828.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A5937] gi|262075557|gb|ACY11530.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus ED98] gi|282590084|gb|EFB95166.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A10102] gi|282764464|gb|EFC04590.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8117] gi|285817324|gb|ADC37811.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus 04-02981] gi|296887654|gb|EFH26552.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300885966|gb|EFK81168.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus aureus subsp. aureus TCH70] gi|312830028|emb|CBX34870.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129927|gb|EFT85917.1| holliday junction DNA helicase [Staphylococcus aureus subsp. aureus CGS03] gi|329727620|gb|EGG64076.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp. aureus 21172] Length = 200 Score = 141 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 52/204 (25%), Positives = 93/204 (45%), Gaps = 7/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + LY +V+++ GV Y I P + + + +R+D L Sbjct: 1 MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKHLDHEVLIRTSLIVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ ++ F+ L V G+G + A+ +L+ T E+ +I +N + + PGI K Sbjct: 60 YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + ++D + + A F A+ AL LGY + + Sbjct: 120 ARQIVLDLKGKVK----ITEEDSDSLLQVDATSTVQDQFVQEAMLALEALGYSKRELAK- 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V L K K + ++ L+ Sbjct: 175 VEKTLNKNK-YDSVDEAVKAGLQL 197 >gi|282880373|ref|ZP_06289084.1| Holliday junction DNA helicase RuvA [Prevotella timonensis CRIS 5C-B1] gi|281305729|gb|EFA97778.1| Holliday junction DNA helicase RuvA [Prevotella timonensis CRIS 5C-B1] Length = 204 Score = 141 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 8/208 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM---RQDQ 57 MI I+G + L +++ G+ Y + + T S + + E+ + R D Sbjct: 1 MIEYIRGELTDLTPAQAVLEAAGIGYSLNISLNTYSAIQGKKEVKLYVHESLVTGGRDDN 60 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 +GF S +R + +L +V GVGA A +LS I+ EL I + +++ + GI Sbjct: 61 FTFYGFYSKQERDLYRMLITVSGVGANTARMILSAISPAELCNVIANGDERMLKSVKGIG 120 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 +K A RI+ +LK K +S + +S +Q A+SAL LG+ + Sbjct: 121 LKTAQRIIVDLKDKIVSSGIATELHVS----DQPQNMVHSGIRDEAVSALTMLGFSPAPS 176 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 V S+LK+ + Q+++LAL I Sbjct: 177 AKVVESILKES-DSMPVEQVVKLALSRI 203 >gi|228935741|ref|ZP_04098554.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823979|gb|EEM69798.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 197 Score = 141 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 46/196 (23%), Positives = 91/196 (46%), Gaps = 5/196 (2%) Query: 10 EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69 E + +YV+ID G+ Y I+ P + ++ ++R+D + L+GF + +R Sbjct: 2 EYVGPEYVVIDHNGIGYQIFTPNP--YVFQRSKQEIRVYTYHYVREDIMALYGFKTREER 59 Query: 70 QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 F L V G+G + A+ +L+ ++V++I ++ K + + P + K A +++ +LK Sbjct: 60 LLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPSVGKKTARQMILDLK 119 Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189 GK + D+ + + A+ AL LGY + + + V +LK+ Sbjct: 120 GKLADVVPDAFVDLFSDEERFDEKKGSSAELDEALEALRALGYAEREVSRVVPELLKE-- 177 Query: 190 NIADDSQIIRLALRAI 205 Q I+ AL + Sbjct: 178 -SLTTDQYIKKALSLL 192 >gi|297559814|ref|YP_003678788.1| Holliday junction DNA helicase RuvA [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844262|gb|ADH66282.1| Holliday junction DNA helicase RuvA [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 206 Score = 141 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 101/206 (49%), Gaps = 2/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + +IDV GV + C LS L +G+ T+ +R++ + L Sbjct: 1 MIAFLTGRVAARGAGTAVIDVGGVGMTVQCTPSALSRL-HVGETGTVATSLVVREESLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF D ++ F LQ+ GVG R+A+ +LS + + L ++ +++ + ++PGI K Sbjct: 60 FGFADDDEKHLFEQLQTASGVGPRLALAMLSVHSPSSLRHAVSTEDTTALTRVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL+GK + + + ++ +S LVNLG+ A A Sbjct: 120 AQRIVLELRGKLDA-PVLTDGTLPGSEAAGTGSEPNGAWRGQVVSGLVNLGWSAKDAEAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 +V + ++ D + ++R ALR +S Sbjct: 179 ASAVAAEAEHTDDVAVLLRSALRRLS 204 >gi|260898721|ref|ZP_05907217.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus Peru-466] gi|308089527|gb|EFO39222.1| holliday junction DNA helicase RuvA [Vibrio parahaemolyticus Peru-466] Length = 147 Score = 141 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 73/137 (53%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + VLI+V G+ Y + P+ L IG+ ++ +R+D L Sbjct: 1 MIGRLRGILLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F + GVG ++ +G+LS +TA++ V + ++ + ++PG+ K Sbjct: 61 YGFNTVKERALFREVIKANGVGPKLGLGILSGMTASQFVSCVEREDVSTLVKLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSS 137 A R++ E+K + + Sbjct: 121 AERLVVEMKDRLKGWGA 137 >gi|70726280|ref|YP_253194.1| Holliday junction DNA helicase RuvA [Staphylococcus haemolyticus JCSC1435] gi|90135915|sp|Q4L6Y7|RUVA_STAHJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|68447004|dbj|BAE04588.1| holliday junction DNA helicase [Staphylococcus haemolyticus JCSC1435] Length = 201 Score = 141 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 49/206 (23%), Positives = 96/206 (46%), Gaps = 8/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLID-VQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 M I+G + L+ +V+++ + GV Y I P + + ++ +R+D Sbjct: 1 MYAYIRGKLTQLFPTHVVVESINGVGYEIQTP-NSYRFQKYLEKELVIYTSLIVREDAQL 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF+++ ++ F+ L V G+G + A+ +L+ T E+ +I +N + + PGI K Sbjct: 60 LYGFINEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKMAIENENDAYLTKFPGIGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I+ +LKGK + +S + + A+ AL LGY + + + Sbjct: 120 TARQIVLDLKGKVQITRETTETLLS----MNEENSNSENLVKEALLALEALGYSKREISK 175 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 V VL K + ++L L+ + Sbjct: 176 -VEKVLNKS-TFDSVDEAVKLGLKTL 199 >gi|228471297|ref|ZP_04056103.1| holliday junction DNA helicase RuvA [Porphyromonas uenonis 60-3] gi|228306939|gb|EEK16037.1| holliday junction DNA helicase RuvA [Porphyromonas uenonis 60-3] Length = 202 Score = 141 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 56/208 (26%), Positives = 91/208 (43%), Gaps = 9/208 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG--KIGDFCTLFVETHMRQDQ- 57 MI ++G I+ L +D GV Y + + T L + L++ MRQ + Sbjct: 1 MIAYLRGTIDTLTPTNAYVDCSGVGYDVNISLSTYDTLHGLERDAPVRLWITEVMRQGEV 60 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 L+GF + ++ F L +V GVG A +LS + EL E I + K + + GI Sbjct: 61 CDLYGFYTREEQALFAKLITVSGVGPATARVILSSLAPLELAEVIESGDDKRLKMVKGIG 120 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 +K A RI+ +LKGK + + + A A AISAL LG+ + Sbjct: 121 LKTAQRIIVDLKGKLPETLTDRDDVTAGIGSRAAR-----EVAEEAISALKMLGFAEANV 175 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 V ++ + + Q+I+ AL + Sbjct: 176 RKVVKQIMTVKPDTP-VEQVIKQALAQL 202 >gi|209560229|ref|YP_002286701.1| Holliday junction DNA helicase RuvA [Streptococcus pyogenes NZ131] gi|226698743|sp|B5XJ07|RUVA_STRPZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|209541430|gb|ACI62006.1| Holliday junction DNA helicase ruvA [Streptococcus pyogenes NZ131] Length = 198 Score = 141 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 91/205 (44%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ Y+I S + T+++ +R+D L Sbjct: 1 MYDYIKGQLTKITAKYIVVEANGLGYMINV-ANPYSFTHSVNQLVTIYLHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK V+ + + + + AI AL+ LGY + Sbjct: 120 AQQMVLDLAGKF------VEAPQETGHTKARSNKAGNTQLDEAIEALLALGYTATELKK- 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + E Q I+ AL+ + Sbjct: 173 IRAFF--EGTSETAEQYIKSALKLL 195 >gi|332300396|ref|YP_004442317.1| Holliday junction ATP-dependent DNA helicase ruvA [Porphyromonas asaccharolytica DSM 20707] gi|332177459|gb|AEE13149.1| Holliday junction ATP-dependent DNA helicase ruvA [Porphyromonas asaccharolytica DSM 20707] Length = 202 Score = 141 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 56/208 (26%), Positives = 91/208 (43%), Gaps = 9/208 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG--KIGDFCTLFVETHMRQDQ- 57 MI ++G I+ L +D GV Y + + T L + L++ MRQ + Sbjct: 1 MIAYLRGTIDTLTPTNAYVDCSGVGYDVNISLSTYDTLHGLERDAPVRLWITEVMRQGEV 60 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 L+GF + ++ F L +V GVG A +LS + EL E I + K + + GI Sbjct: 61 CDLYGFYTREEQALFTKLITVSGVGPATARVILSSLAPLELAEVIESGDDKRLKMVKGIG 120 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 +K A RI+ +LKGK + + + A A AISAL LG+ + Sbjct: 121 LKTAQRIIVDLKGKLPETLTDRDDVTAGIGSRAAR-----EVAEEAISALKMLGFAEVNV 175 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 V ++ + + Q+I+ AL + Sbjct: 176 RKVVKQIMSVKPDTP-VEQVIKQALAKL 202 >gi|257793715|ref|ZP_05642694.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9781] gi|258410986|ref|ZP_05681266.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9763] gi|258420213|ref|ZP_05683168.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9719] gi|258438215|ref|ZP_05689499.1| Holliday junction DNA helicase subunit RuvA [Staphylococcus aureus A9299] gi|258443678|ref|ZP_05692017.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8115] gi|258446885|ref|ZP_05695039.1| Holliday junction DNA helicase [Staphylococcus aureus A6300] gi|258448799|ref|ZP_05696911.1| Holliday junction DNA helicase subunit RuvA [Staphylococcus aureus A6224] gi|295406763|ref|ZP_06816568.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8819] gi|297245654|ref|ZP_06929519.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8796] gi|257787687|gb|EEV26027.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9781] gi|257840136|gb|EEV64600.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9763] gi|257843924|gb|EEV68318.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9719] gi|257848259|gb|EEV72250.1| Holliday junction DNA helicase subunit RuvA [Staphylococcus aureus A9299] gi|257851084|gb|EEV75027.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8115] gi|257854460|gb|EEV77409.1| Holliday junction DNA helicase [Staphylococcus aureus A6300] gi|257858077|gb|EEV80966.1| Holliday junction DNA helicase subunit RuvA [Staphylococcus aureus A6224] gi|294968510|gb|EFG44534.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8819] gi|297177305|gb|EFH36557.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8796] Length = 203 Score = 141 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 52/204 (25%), Positives = 93/204 (45%), Gaps = 7/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + LY +V+++ GV Y I P + + + +R+D L Sbjct: 4 MYAYVKGKLTHLYPTHVVVETAGVGYEIQTP-NSYRFQKHLDHEVLIRTSLIVREDAQLL 62 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ ++ F+ L V G+G + A+ +L+ T E+ +I +N + + PGI K Sbjct: 63 YGFSSEEEKDMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT 122 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + ++D + + A F A+ AL LGY + + Sbjct: 123 ARQIVLDLKGKVK----ITEEDSDSLLQVDATSTVQDQFVQEAMLALEALGYSKRELAK- 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V L K K + ++ L+ Sbjct: 178 VEKTLNKNK-YDSVDEAVKAGLQL 200 >gi|226366281|ref|YP_002784064.1| Holliday junction DNA helicase RuvA [Rhodococcus opacus B4] gi|254767383|sp|C1B4D0|RUVA_RHOOB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226244771|dbj|BAH55119.1| Holliday junction DNA helicase RuvA [Rhodococcus opacus B4] Length = 200 Score = 141 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 92/205 (44%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +I+ GV Y + TL L + G L +R+D + L Sbjct: 1 MIASVRGEVLEIALDHAVIESAGVGYRVNATPATLGGLQR-GTEARLVTAMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ F LLQ+V GVG R+AM L+ + L ++ N + ++PGI + Sbjct: 60 YGFPDSESKELFGLLQTVSGVGPRLAMATLAVLEPEALRSALAEGNVTALTRVPGIGKRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K ++ S S + ALV LG+ QA A Sbjct: 120 AERMVVELRDKVDAVG-------STSGAVPLGAGGGGSVRDQIVEALVGLGFPAKQAEQA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 SVL + S + R AL + Sbjct: 173 TDSVLAEAPESTTSSAL-RSALSLL 196 >gi|169629967|ref|YP_001703616.1| Holliday junction DNA helicase RuvA [Mycobacterium abscessus ATCC 19977] gi|229560105|sp|B1MCJ1|RUVA_MYCA9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|169241934|emb|CAM62962.1| Holliday junction DNA helicase RuvA [Mycobacterium abscessus] Length = 202 Score = 141 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 55/208 (26%), Positives = 94/208 (45%), Gaps = 13/208 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + D+V+I+ GV Y + TLS L + G L +R+D + L Sbjct: 1 MIASVNGEVIDIALDHVVIEAAGVGYRVNATPATLSTL-RRGTQIRLITAMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F L V GVG ++AM L+ A L +++ + + ++PGI + Sbjct: 60 YGFTDTDARDLFTTLLGVSGVGPKIAMATLAVYDAPTLRQALADGDVAALTRVPGIGKRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K + + + + + AL+ LG+ QA A Sbjct: 120 AERLVLELREKVAA---------APGGTTELGRGTASLVRSQVVEALIGLGFAAKQAEQA 170 Query: 181 VVSVLKKEKN---IADDSQIIRLALRAI 205 +VL ++ AD S ++R AL + Sbjct: 171 TDTVLAQDNPGDTGADVSGVLRSALALL 198 >gi|299822806|ref|ZP_07054692.1| crossover junction ATP-dependent DNA helicase RuvA [Listeria grayi DSM 20601] gi|299816335|gb|EFI83573.1| crossover junction ATP-dependent DNA helicase RuvA [Listeria grayi DSM 20601] Length = 200 Score = 141 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 94/205 (45%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + ++++++ V Y + + G +FV H+R+D + L Sbjct: 1 MYDYINGTVTDITPEFIVVEAGQVGYQL-ITGNPFAFQSMSGQTAKVFVYQHVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L SV G+G + A+ +++ A L+ +I ++ + + P + K Sbjct: 60 FGFKTKEERFLFKKLLSVSGIGPKSALAIIATGDANALIGAIEAEDDVYLTKFPSVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + + + KE+ + AI AL LGY + + Sbjct: 120 ARQIILDLKGKLSDVDTSFAK---MQRKEEDLTAGLTEALEEAILALEALGYNKKELKKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + K++ I+LAL+ + Sbjct: 177 IPKLEKED---LSSDAYIKLALQLM 198 >gi|78212692|ref|YP_381471.1| Holliday junction DNA helicase subunit RuvA [Synechococcus sp. CC9605] gi|123756909|sp|Q3AKG6|RUVA_SYNSC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|78197151|gb|ABB34916.1| Holliday junction DNA helicase RuvA [Synechococcus sp. CC9605] Length = 214 Score = 141 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 49/214 (22%), Positives = 87/214 (40%), Gaps = 12/214 (5%) Query: 1 MIGKIKGNIEGL----YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 M+G +KG I + ++ GV Y + R L + L++ + D Sbjct: 1 MVGWLKGLIVYKLQRGNRSQITLNCNGVGYEVQITQREWLTL-ENDQTIQLWIHQSISAD 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 + FGF S +R F L SV GVG + M ++ + ELVE+I + + + + GI Sbjct: 60 NWQFFGFKSTQERDIFRELISVNGVGPQAGMALMQECKSQELVEAISNGDLRRLCKAQGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 + A R+ EL+ + + + D + E MP + + L LGY + Sbjct: 120 GKRTAERLAVELRASIAAFAGM---DPAPSLAEGVSSEQMPESGADVEATLSMLGYDDLE 176 Query: 177 ATTAVVSVLKKE----KNIADDSQIIRLALRAIS 206 A+ ++ + D +R L+ +S Sbjct: 177 VRRAIRAIAEGSDGPPPPGDDQDAWLRGCLQWLS 210 >gi|256375826|ref|YP_003099486.1| Holliday junction DNA helicase RuvA [Actinosynnema mirum DSM 43827] gi|255920129|gb|ACU35640.1| Holliday junction DNA helicase RuvA [Actinosynnema mirum DSM 43827] Length = 198 Score = 141 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +++V GV + + TL L + G+ L +R+D + L Sbjct: 1 MISSLRGQVLSIGLDHAVVEVGGVGFAVQATPATLGSL-RRGEEAVLSTALVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF RQ F LLQ+V G+G R+A+ L+ + +L ++ + V+ Q+PGI K Sbjct: 60 FGFADADSRQLFGLLQTVSGIGPRLALATLAVLEPEKLRAALAEGSVSVLTQVPGIGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K L++ D + ++ + AL+ LG+ QA TA Sbjct: 120 AERLVIELRDKVGQLATAPASD---------GVVAVGRVRDQVVEALLGLGFPAKQAETA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V VL ++ ++ S ++R AL + Sbjct: 171 VDGVLAEDPSLG-TSVVLRKALSGL 194 >gi|269795058|ref|YP_003314513.1| Holliday junction DNA helicase subunit RuvA [Sanguibacter keddieii DSM 10542] gi|269097243|gb|ACZ21679.1| Holliday junction DNA helicase subunit RuvA [Sanguibacter keddieii DSM 10542] Length = 206 Score = 141 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 53/209 (25%), Positives = 102/209 (48%), Gaps = 12/209 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G ++ + D +++V G+ Y++Y TL+ L ++G ++ +R+D + L Sbjct: 1 MIASLSGTVQTVRLDSAVLNVAGIGYLVYATPATLATL-RVGAEASVATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +R F Q+V GVG R+A+ +L+ T L ++ + K + ++PGI K Sbjct: 60 YGFSDDDERSVFEASQTVSGVGPRLALAMLAVHTPDGLRRALAGGDVKALTRVPGIGAKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL K + + ++ + + ALV+LG+ A A Sbjct: 120 AQRLILELGDKLGQPTGLDGGSVA-------PTAGLGDQRDQVVEALVSLGWSAKVAEDA 172 Query: 181 VVSVLKKEK----NIADDSQIIRLALRAI 205 + +VL + +D ++R AL+ + Sbjct: 173 IGTVLAESGATSVTTSDVPVVLRSALKVL 201 >gi|163742241|ref|ZP_02149629.1| Holliday junction DNA helicase motor protein [Phaeobacter gallaeciensis 2.10] gi|161384571|gb|EDQ08952.1| Holliday junction DNA helicase motor protein [Phaeobacter gallaeciensis 2.10] Length = 229 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 116/227 (51%), Gaps = 22/227 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G +E D+VLIDV+GV YI+YC RT++ L G+ L+ + +R+D ++L Sbjct: 1 MIGKLTGRLEYRSSDHVLIDVRGVGYIVYCSDRTMATLPGTGEAVALYTDMVVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++++W LL SVQGVGA+V++ +L + + +I L + + G+ K Sbjct: 61 YGFPSLMEKEWHRLLTSVQGVGAKVSLAILGTLGPEGVSRAIALGDWATVKAAKGVGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINA----------------- 163 A RI+ +LK KA + ++ ++ + A Sbjct: 121 AQRIVLDLKDKAPGVMAMGGTIADAMDGPGLDVVEPAEPVSTAKKPRKAPPKAPSGAAAA 180 Query: 164 ----ISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 +SAL NLGYG A AV + A+++++IR ALR ++ Sbjct: 181 SAGALSALGNLGYGPSDAAAAVAEAAATYPD-ANEAELIRAALRLLA 226 >gi|293400498|ref|ZP_06644643.1| holliday junction DNA helicase RuvA [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305524|gb|EFE46768.1| holliday junction DNA helicase RuvA [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 194 Score = 141 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 97/206 (47%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G I D ++ID G+ Y +Y L TLF H+R+D I L Sbjct: 1 MIAFIRGTIHSYSNDSLIIDNNGIGYRVYIANPQAVRL---NTEVTLFTYQHVREDAITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S + F+ L SV+GVG + A+G+L+ A ++ +I + K + +PGI K Sbjct: 58 FGFTSMEEHDLFLQLISVKGVGPKTALGMLAVCPAKNMIMAIENNDVKTLKGLPGIGAKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LK K + + ++ + ++AI AL LGY + ++ Sbjct: 118 ASQIVLDLKNKLVEEVTEIE-------------AKENAQLLDAIEALKALGYKNAEISS- 163 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V L + Q IR AL ++ Sbjct: 164 VKKELMAMEESTTSDQYIRKALSILA 189 >gi|312139494|ref|YP_004006830.1| holliday junction DNA helicase ruva [Rhodococcus equi 103S] gi|311888833|emb|CBH48145.1| Holliday junction DNA helicase RuvA [Rhodococcus equi 103S] Length = 201 Score = 141 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 97/205 (47%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +I+ GV Y + TL+ L + GD L +R+D + L Sbjct: 1 MIASVRGEVLEVGLDHAVIEAAGVGYRVNATPATLATL-RRGDESRLLTAMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F LLQ+V GVG R+AM +L+ + L +++ N + ++PGI + Sbjct: 60 YGFADAESRDLFGLLQTVSGVGPRLAMAILAVLEPEALRKALAEGNVTALTRVPGIGKRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K +++ + S + AL LG+ + A A Sbjct: 120 AERMVVELRDKVEAVAVTGDLPGAGA------ATSASVVRDQVVEALTGLGFKLEHAEKA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 +V+ + A S ++R AL + Sbjct: 174 TDTVVAADPE-APTSTVLRSALALL 197 >gi|229597664|pdb|2ZTC|A Chain A, Mtruva Form Ii gi|229597665|pdb|2ZTC|B Chain B, Mtruva Form Ii gi|229597666|pdb|2ZTC|C Chain C, Mtruva Form Ii gi|229597667|pdb|2ZTC|D Chain D, Mtruva Form Ii gi|229597668|pdb|2ZTD|A Chain A, Mtruva Form Iii gi|229597669|pdb|2ZTD|B Chain B, Mtruva Form Iii gi|229597670|pdb|2ZTE|A Chain A, Mtruva Form Iv Length = 212 Score = 141 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 92/205 (44%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+V+I+ GV Y + TL+ L + G L +R+D + L Sbjct: 17 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATL-RQGTEARLITAMIVREDSMTL 75 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F+ L SV GVG R+AM L+ A L + + N + ++PGI + Sbjct: 76 YGFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRG 135 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K A + + + ALV LG+ QA A Sbjct: 136 AERMVLELRDKV-----------GVAATGGALSTNGHAVRSPVVEALVGLGFAAKQAEEA 184 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 +VL + A S +R AL + Sbjct: 185 TDTVLAANHD-ATTSSALRSALSLL 208 >gi|114776334|ref|ZP_01451379.1| putative Holliday junction DNA helicase RuvA [Mariprofundus ferrooxydans PV-1] gi|114553164|gb|EAU55562.1| putative Holliday junction DNA helicase RuvA [Mariprofundus ferrooxydans PV-1] Length = 188 Score = 141 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 108/207 (52%), Gaps = 20/207 (9%) Query: 1 MIGKIKGNIEGLYE-DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG + G + L VL+ G+ Y + ++TL L ++G+ L + T++R+DQI Sbjct: 1 MIGWLSGTVRALDPAGSVLLVTGGIGYDVSVSVQTLCKL-RLGEAAELSIHTYVREDQIT 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF + +R+ F L SV G+GAR+A+ ++ ++ EL+ +I + IA+ PGI K Sbjct: 60 LFGFANSNEREIFRKLTSVSGIGARMALNLMGGMSIEELIGAIEHADDLAIARTPGIGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ EL+GK S+++ +S + A SAL NLGY Q Sbjct: 120 TAQRLILELQGKLGSVAAEGGAAIS-------------NKADEVRSALTNLGYKPAQIDL 166 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ V AD + R AL+A+S Sbjct: 167 ALKHV-----EPADFESMFRAALKAMS 188 >gi|332982456|ref|YP_004463897.1| Holliday junction DNA helicase RuvA [Mahella australiensis 50-1 BON] gi|332700134|gb|AEE97075.1| Holliday junction DNA helicase RuvA [Mahella australiensis 50-1 BON] Length = 194 Score = 141 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 54/204 (26%), Positives = 97/204 (47%), Gaps = 11/204 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ + G IE +YV+IDV G+ + +Y + L+ + + L+V H+ + + L Sbjct: 1 MLAYLDGLIEHKSSNYVIIDVNGIGFKVYATTKILADMPDVKSRTRLYVHWHIGEGNMAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S+ F L SV GVG + A+ ++ ++ +++ +I+ + K +++ GI K Sbjct: 61 FGFASEQQVDMFESLISVSGVGPKGALALMDALSYEQILLAIVQGDEKSLSRAKGIGAKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + D+ S A+ AL++LGY +A Sbjct: 121 AQRIIMELKDKLHMPREIKSSDIG--------ERIDESTYGQAVEALISLGYAPAEAARV 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + V + ++I+ ALR Sbjct: 173 LEGVTT---DGRSLEEVIKEALRR 193 >gi|262197092|ref|YP_003268301.1| Holliday junction DNA helicase RuvA [Haliangium ochraceum DSM 14365] gi|262080439|gb|ACY16408.1| Holliday junction DNA helicase RuvA [Haliangium ochraceum DSM 14365] Length = 210 Score = 141 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 56/210 (26%), Positives = 96/210 (45%), Gaps = 7/210 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + V+++ GV Y + I TL L G+ TL + TH + ++ L Sbjct: 1 MIGRLRGTLVEQEGSMVIVECGGVGYEVTVSIHTLQSLPAEGEPVTLRIFTHALESRVAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRIT-ATELVESIILQNSKVIAQIPGISMK 119 +GF S L+R F LL +V+ VG A+G+LS + E+ E I + + ++ G+ K Sbjct: 61 YGFGSTLERDLFDLLITVKKVGPSSAVGILSAGSGPAEIAEMIANGETSSLTRLRGVGKK 120 Query: 120 IASRIMTELKGKAISLSSV----VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 A ++ EL+ K L + + + A S AL+ LG+ Q Sbjct: 121 TAEMLVVELREKCELLLATHRVQGGRAAARAPAAAARPSSRGPLLDEVAQALLQLGWRQQ 180 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205 V + ++ ++R ALRA+ Sbjct: 181 SVDQVVSELAPTAED--SLESLLRQALRAM 208 >gi|290769835|gb|ADD61608.1| putative protein [uncultured organism] gi|291542961|emb|CBL16071.1| Holliday junction DNA helicase, RuvA subunit [Ruminococcus bromii L2-63] Length = 200 Score = 141 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 95/205 (46%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ ++G + + + +++ GV Y+ + TL + K+ TL+ ++R+D + L Sbjct: 1 MLYSVRGKLIAIESNAAVVECGGVGYMCQTTMNTLKAV-KLNTEVTLYTYLNVREDAVDL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + + F L SV GVG + + VLS ++ ++ +I + K I + GI KI Sbjct: 60 FGFATKAELETFKNLISVSGVGPKAGLAVLSELSPEQVAMAIASDDLKTITRAQGIGKKI 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K ++D S Q + AI AL LGY Sbjct: 120 AQRIVLELKDKLAK---AAKEDSSFAQAAQNSVNVSTGNVPKAIEALGVLGYSPSD---- 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V VL + Q+I L L+ + Sbjct: 173 VSPVLATLDSALPVEQLISLTLKQM 197 >gi|282899464|ref|ZP_06307430.1| DNA recombination protein, RuvA [Cylindrospermopsis raciborskii CS-505] gi|281195621|gb|EFA70552.1| DNA recombination protein, RuvA [Cylindrospermopsis raciborskii CS-505] Length = 214 Score = 141 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 55/213 (25%), Positives = 94/213 (44%), Gaps = 14/213 (6%) Query: 1 MIGKIKGNIEGLYEDY-----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55 MI +KG + G+ + ++V G+ Y +Y P R + L GD +F +R+ Sbjct: 1 MISYLKGIVAGVQTGSPNRWILTLEVNGIGYDVYIPQRLANQLTNNGDVAHIFTHYQIRE 60 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 + L+GF S +R F L SV G+G +A+ ++ + ELV++II N+ ++ Q PG Sbjct: 61 ELPILYGFSSPAERDLFRHLLSVTGIGTAMAIALIDTLELPELVQAIISGNTTMLVQTPG 120 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 + K A R+ ELKGK + A P+ L LGY Sbjct: 121 VGKKTAERLCLELKGKLVEWR-------KSAGFFVATGGPPPAILEEVQMTLFALGYTPH 173 Query: 176 QATTAVVSVLKK--EKNIADDSQIIRLALRAIS 206 + + A+ + + + I+ A+ +S Sbjct: 174 EVSHALHVISEDIGLPKNSYPEDWIKQAIAHLS 206 >gi|156741100|ref|YP_001431229.1| Holliday junction DNA helicase RuvA [Roseiflexus castenholzii DSM 13941] gi|189045765|sp|A7NIB1|RUVA_ROSCS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|156232428|gb|ABU57211.1| Holliday junction DNA helicase RuvA [Roseiflexus castenholzii DSM 13941] Length = 197 Score = 141 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 103/204 (50%), Gaps = 11/204 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+V+I+ G+ ++IY P + L+ G IG LF +R+D + L Sbjct: 1 MIASVRGTLIAVAADHVVIETGGIGWMIYAPRQVLAAPGDIGAEMRLFTCLIVREDALTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + RQ F L SV GVG + A+ +LS T EL +I + +A+ P I K+ Sbjct: 61 YGFKTVEQRQLFETLLSVTGVGPQAALNLLSSGTTDELRLAIATGDVARLARTPRIGKKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK V +S ++ + LV+LG+ +A+TA Sbjct: 121 AERLVLELKGKLDIKGLPVAPGVS---------PAVAAVNAELSEMLVSLGFSSAEASTA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + ++ D + +RLALR Sbjct: 172 IAALPPDAP--LDLEERLRLALRY 193 >gi|15609730|ref|NP_217109.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis H37Rv] gi|15842133|ref|NP_337170.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis CDC1551] gi|31793777|ref|NP_856270.1| Holliday junction DNA helicase RuvA [Mycobacterium bovis AF2122/97] gi|121638478|ref|YP_978702.1| Holliday junction DNA helicase RuvA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662432|ref|YP_001283955.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis H37Ra] gi|148823788|ref|YP_001288542.1| Holliday junction DNA helicase motor protein [Mycobacterium tuberculosis F11] gi|167967067|ref|ZP_02549344.1| Holliday junction DNA helicase motor protein [Mycobacterium tuberculosis H37Ra] gi|215404543|ref|ZP_03416724.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis 02_1987] gi|215412369|ref|ZP_03421129.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis 94_M4241A] gi|215431548|ref|ZP_03429467.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis EAS054] gi|215446844|ref|ZP_03433596.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis T85] gi|218754331|ref|ZP_03533127.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis GM 1503] gi|219558597|ref|ZP_03537673.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis T17] gi|224990972|ref|YP_002645659.1| Holliday junction DNA helicase motor protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253798325|ref|YP_003031326.1| Holliday junction DNA helicase ruvA [Mycobacterium tuberculosis KZN 1435] gi|254232711|ref|ZP_04926038.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis C] gi|254365262|ref|ZP_04981307.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis str. Haarlem] gi|254551644|ref|ZP_05142091.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187606|ref|ZP_05765080.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis CPHL_A] gi|260201721|ref|ZP_05769212.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis T46] gi|260205915|ref|ZP_05773406.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis K85] gi|289444132|ref|ZP_06433876.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis T46] gi|289448243|ref|ZP_06437987.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis CPHL_A] gi|289553618|ref|ZP_06442828.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis KZN 605] gi|289570764|ref|ZP_06450991.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis T17] gi|289575303|ref|ZP_06455530.1| Holliday junction DNA helicase ruvA [Mycobacterium tuberculosis K85] gi|289746386|ref|ZP_06505764.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis 02_1987] gi|289754712|ref|ZP_06514090.1| holliday junction DNA helicase motor protein [Mycobacterium tuberculosis EAS054] gi|289758724|ref|ZP_06518102.1| holliday junction DNA helicase motor protein [Mycobacterium tuberculosis T85] gi|289762766|ref|ZP_06522144.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis GM 1503] gi|294994298|ref|ZP_06799989.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis 210] gi|297635203|ref|ZP_06952983.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis KZN 4207] gi|297732196|ref|ZP_06961314.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis KZN R506] gi|298526068|ref|ZP_07013477.1| holliday junction DNA helicase RuvA [Mycobacterium tuberculosis 94_M4241A] gi|306776867|ref|ZP_07415204.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu001] gi|306780631|ref|ZP_07418968.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu002] gi|306785395|ref|ZP_07423717.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu003] gi|306789995|ref|ZP_07428317.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu004] gi|306794076|ref|ZP_07432378.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu005] gi|306798490|ref|ZP_07436792.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu006] gi|306804353|ref|ZP_07441021.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu008] gi|306807607|ref|ZP_07444275.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu007] gi|306969809|ref|ZP_07482470.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu009] gi|306972982|ref|ZP_07485643.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu010] gi|307080692|ref|ZP_07489862.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu011] gi|307085281|ref|ZP_07494394.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu012] gi|313659531|ref|ZP_07816411.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis KZN V2475] gi|54039572|sp|P66745|RUVA_MYCBO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|54042201|sp|P66744|RUVA_MYCTU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230567|sp|A1KLU1|RUVA_MYCBP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230571|sp|A5U5U3|RUVA_MYCTA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254767377|sp|C1AF62|RUVA_MYCBT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|114794219|pdb|2H5X|A Chain A, Ruva From Mycobacterium Tuberculosis gi|114794220|pdb|2H5X|B Chain B, Ruva From Mycobacterium Tuberculosis gi|114794221|pdb|2H5X|C Chain C, Ruva From Mycobacterium Tuberculosis gi|114794222|pdb|2H5X|D Chain D, Ruva From Mycobacterium Tuberculosis gi|1478219|emb|CAB01282.1| PROBABLE HOLLIDAY JUNCTION DNA HELICASE RUVA [Mycobacterium tuberculosis H37Rv] gi|13882417|gb|AAK46984.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis CDC1551] gi|31619371|emb|CAD94809.1| PROBABLE HOLLIDAY JUNCTION DNA HELICASE RUVA [Mycobacterium bovis AF2122/97] gi|121494126|emb|CAL72604.1| Probable holliday junction DNA helicase ruvA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124601770|gb|EAY60780.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis C] gi|134150775|gb|EBA42820.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis str. Haarlem] gi|148506584|gb|ABQ74393.1| Holliday junction DNA helicase motor protein [Mycobacterium tuberculosis H37Ra] gi|148722315|gb|ABR06940.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis F11] gi|224774085|dbj|BAH26891.1| Holliday junction DNA helicase motor protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253319828|gb|ACT24431.1| Holliday junction DNA helicase ruvA [Mycobacterium tuberculosis KZN 1435] gi|289417051|gb|EFD14291.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis T46] gi|289421201|gb|EFD18402.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis CPHL_A] gi|289438250|gb|EFD20743.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis KZN 605] gi|289539734|gb|EFD44312.1| Holliday junction DNA helicase ruvA [Mycobacterium tuberculosis K85] gi|289544518|gb|EFD48166.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis T17] gi|289686914|gb|EFD54402.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis 02_1987] gi|289695299|gb|EFD62728.1| holliday junction DNA helicase motor protein [Mycobacterium tuberculosis EAS054] gi|289710272|gb|EFD74288.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis GM 1503] gi|289714288|gb|EFD78300.1| holliday junction DNA helicase motor protein [Mycobacterium tuberculosis T85] gi|298495862|gb|EFI31156.1| holliday junction DNA helicase RuvA [Mycobacterium tuberculosis 94_M4241A] gi|308214722|gb|EFO74121.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu001] gi|308326462|gb|EFP15313.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu002] gi|308329914|gb|EFP18765.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu003] gi|308333529|gb|EFP22380.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu004] gi|308337556|gb|EFP26407.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu005] gi|308341223|gb|EFP30074.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu006] gi|308346003|gb|EFP34854.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu007] gi|308349030|gb|EFP37881.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu008] gi|308352726|gb|EFP41577.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu009] gi|308357598|gb|EFP46449.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu010] gi|308361540|gb|EFP50391.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu011] gi|308365151|gb|EFP54002.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis SUMu012] gi|323718789|gb|EGB27946.1| Holliday junction DNA helicase ruvA [Mycobacterium tuberculosis CDC1551A] gi|326904206|gb|EGE51139.1| Holliday junction DNA helicase ruvA [Mycobacterium tuberculosis W-148] gi|328458095|gb|AEB03518.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis KZN 4207] Length = 196 Score = 141 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 92/205 (44%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+V+I+ GV Y + TL+ L + G L +R+D + L Sbjct: 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATL-RQGTEARLITAMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F+ L SV GVG R+AM L+ A L + + N + ++PGI + Sbjct: 60 YGFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K A + + + ALV LG+ QA A Sbjct: 120 AERMVLELRDKV-----------GVAATGGALSTNGHAVRSPVVEALVGLGFAAKQAEEA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 +VL + A S +R AL + Sbjct: 169 TDTVLAANHD-ATTSSALRSALSLL 192 >gi|288930025|ref|ZP_06423866.1| holliday junction DNA helicase RuvA [Prevotella sp. oral taxon 317 str. F0108] gi|288328684|gb|EFC67274.1| holliday junction DNA helicase RuvA [Prevotella sp. oral taxon 317 str. F0108] Length = 205 Score = 141 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 59/209 (28%), Positives = 98/209 (46%), Gaps = 9/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM----RQD 56 MI IKG++ L +I+ GV Y + + T + + + D LFV + R D Sbjct: 1 MIEYIKGDLAELTPAMAVIEAAGVGYALNISLNTYTAI-QGKDKVKLFVHEALVTGGRDD 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF + +R+ + LL SV GVGA A +LS ++ EL I + K++ + GI Sbjct: 60 SYTLYGFATRQERELYRLLISVSGVGANSARMILSGMSPAELCNVIAAGDDKMLKTVKGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 K A RI+ +LK K ++ + V + A+ AL LG+ Sbjct: 120 GAKTAQRIIVDLKDKIVTSGVAQEL---SVPTNANATVMNTAVKDEAVGALTMLGFAPSA 176 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + VV +LK++ + Q+++ AL+ I Sbjct: 177 SAKVVVEILKEQPELP-VEQVVKAALKMI 204 >gi|260435378|ref|ZP_05789348.1| holliday junction DNA helicase RuvA [Synechococcus sp. WH 8109] gi|260413252|gb|EEX06548.1| holliday junction DNA helicase RuvA [Synechococcus sp. WH 8109] Length = 222 Score = 141 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 53/214 (24%), Positives = 91/214 (42%), Gaps = 12/214 (5%) Query: 1 MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MIG ++G + VL+ GV Y ++ R L GD L++ R+D Sbjct: 9 MIGWLQGRPMECWTQGNRSGVLLLCGGVGYEVHLTERHQQNLPADGD-LNLWIHQVQRED 67 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF +R F LL SV GVG + + ++ ELVE+I + + + + GI Sbjct: 68 GSSLYGFPLRQERDLFRLLISVSGVGPQAGLALMQECKPQELVEAISSGDLRRLCKAQGI 127 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 + A R+ EL+ S+++ D + E MP+ + + L LGY + Sbjct: 128 GKRTAERLAVELR---ASIAAFAGVDPAPSLAEGVSSEQMPASGADVEATLSMLGYDDLE 184 Query: 177 ATTAVVSVLKKE----KNIADDSQIIRLALRAIS 206 A+ ++ + D +R L+ +S Sbjct: 185 IRRAIRAIAEGADGQPPAGDDQDAWLRGCLQWLS 218 >gi|325672616|ref|ZP_08152312.1| crossover junction ATP-dependent DNA helicase RuvA [Rhodococcus equi ATCC 33707] gi|325556493|gb|EGD26159.1| crossover junction ATP-dependent DNA helicase RuvA [Rhodococcus equi ATCC 33707] Length = 201 Score = 141 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 97/205 (47%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +I+ GV Y + TL+ L + GD L +R+D + L Sbjct: 1 MIASVRGEVLEVGLDHAVIEAAGVGYRVNATPATLATL-RRGDESRLLTAMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F LLQ+V GVG R+AM +L+ + L +++ N + ++PGI + Sbjct: 60 YGFADAESRDLFGLLQTVSGVGPRLAMAILAVLEPEALRKALAEGNVTALTRVPGIGKRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K +++ + S + AL LG+ + A A Sbjct: 120 AERMVVELRDKVEAVAVTGDLPGAGA------ATSASIVRDQVVEALTGLGFKLEHAEKA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 +V+ + A S ++R AL + Sbjct: 174 TDTVVAADPE-APTSTVLRSALALL 197 >gi|227549154|ref|ZP_03979203.1| Holliday junction DNA helicase motor protein [Corynebacterium lipophiloflavum DSM 44291] gi|227078774|gb|EEI16737.1| Holliday junction DNA helicase motor protein [Corynebacterium lipophiloflavum DSM 44291] Length = 206 Score = 141 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 55/208 (26%), Positives = 95/208 (45%), Gaps = 8/208 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + D+ +I+ GV Y + TL+ L + G+ + ++ D + L Sbjct: 1 MIDSLHGEVLSIGLDHAVIECAGVGYRLLAGPPTLARLTR-GETTRVLTSMVVKDDGVTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQN---SKVIAQIPGIS 117 +GF D R F LQ+V G+G ++A+ LS EL I + K I IPG+ Sbjct: 60 YGFADDGARTMFHRLQTVSGLGPKLALACLSVFEPAELAGLITAGDAAAIKRIQTIPGVG 119 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 K+A R+ ELK K L + + + A A + AL+ LG+ A Sbjct: 120 KKMAERMALELKDKIDGLYATSEPGAAPSAPVTAGTSL---AAEQVVEALIGLGFADKVA 176 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 V +++++ + S+++R AL + Sbjct: 177 RGVVDTLIQERPGDSS-SELLRAALTQL 203 >gi|147669064|ref|YP_001213882.1| Holliday junction DNA helicase RuvA [Dehalococcoides sp. BAV1] gi|146270012|gb|ABQ17004.1| Holliday junction DNA helicase subunit RuvA [Dehalococcoides sp. BAV1] Length = 194 Score = 140 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 100/204 (49%), Gaps = 14/204 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E +D+ +I+V GV + + P + + +G +G +F H+R+D + L Sbjct: 1 MISSLNGILEASGKDWAVINVSGVGFRCHMPATSSALIGGLGQRVRVFTHLHVREDALSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F L V G+G ++ + +LS + A L +II N+++++ IPGI K Sbjct: 61 FGFATTEELSLFETLIDVSGIGPKLGLAMLSVMNAEALASAIISGNAELLSTIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 +SRI+ ELK K N E + + + ++ L LGY +A A Sbjct: 121 SSRIILELKDKIAK------------NWEAGVLSQVTEANSDILATLTALGYSSSEAAKA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + S+ + + I+LAL Sbjct: 169 ISSL--GDNGDLPLEERIKLALNY 190 >gi|317505321|ref|ZP_07963249.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella salivae DSM 15606] gi|315663535|gb|EFV03274.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella salivae DSM 15606] Length = 205 Score = 140 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 60/209 (28%), Positives = 104/209 (49%), Gaps = 9/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM----RQD 56 MI IKG + L +++ GV Y + + T S + + L+V + R D Sbjct: 1 MIEYIKGQLAELTPALAVVEAAGVGYALNISLTTYSGI-QGKKEVKLYVHEALTTGGRDD 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 LFGF++ +R+ + LL +V GVGA A +LS + TEL +I + ++I + GI Sbjct: 60 SFTLFGFVNKQERELYRLLITVSGVGANTARMMLSSMNPTELCNAIANGDERMIKTVKGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 +K A RI+ +L+ K ++ + V E+A + A++AL LG+ Sbjct: 120 GLKTAQRIIVDLRDKIMASGIANEL---HVGGEKAESTLNNAVKEEAVAALTMLGFSPAP 176 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 VVS+L+K+ N+ Q+++ AL+ + Sbjct: 177 IAKVVVSILQKQANLP-VEQVVKEALKLL 204 >gi|81427980|ref|YP_394979.1| Holliday junction DNA helicase RuvA [Lactobacillus sakei subsp. sakei 23K] gi|90135183|sp|Q38YR0|RUVA_LACSS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|78609621|emb|CAI54667.1| Holliday junction DNA helicase RuvA [Lactobacillus sakei subsp. sakei 23K] Length = 203 Score = 140 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + + YV+++VQG+ Y + + + +FV +R I L Sbjct: 1 MYEYLKGLVTAVNPYYVVLEVQGIGYQLQV-ANPYRYTESMSEVVQIFVHQAVRDTDITL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++Q F L SV G+G + A+ +L+ + L+++I+ + + + PG+ K Sbjct: 60 FGFYDLDEKQLFQKLISVSGIGPKSALAILANSDHSGLIQAIMNDDIGYLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I +LKGK L + +A++AL LGY + Sbjct: 120 AQQIALDLKGKLGDLEQ--SATLVGQTAIDLGSQGDSPELSDALAALSALGYSAREVKAI 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + Q +R LR + Sbjct: 178 TPKL--TDFAAQTTDQYLREGLRLL 200 >gi|304383692|ref|ZP_07366151.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella marshii DSM 16973] gi|304335216|gb|EFM01487.1| crossover junction ATP-dependent DNA helicase RuvA [Prevotella marshii DSM 16973] Length = 204 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 56/209 (26%), Positives = 99/209 (47%), Gaps = 10/209 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM----RQD 56 MI IKG + +I+ GV Y + + T + + + L+V + R D Sbjct: 1 MIEYIKGELSEATPALAVIEASGVGYALNISLNTYTSV-QGKKEVKLYVHEVLSAGGRDD 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF + +R+ + LL SV GVGA A +LS +T EL I + +++ + GI Sbjct: 60 SFTLYGFFTRQERELYRLLISVSGVGANTARMILSAMTTAELCNVISTGDERMLKGVKGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 +K A RI+ +LK K +S + + + + + + A+ AL LG+ Sbjct: 120 GLKTAQRIIIDLKDKIVSSGIAQELPTTAGH----VVATNSAVKDEAVGALTMLGFSPAP 175 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 ++ VV +LK ++ Q+++ AL+ I Sbjct: 176 SSKVVVEILKMHPDLP-VEQVVKQALKMI 203 >gi|242373942|ref|ZP_04819516.1| crossover junction endodeoxyribonuclease [Staphylococcus epidermidis M23864:W1] gi|242348296|gb|EES39898.1| crossover junction endodeoxyribonuclease [Staphylococcus epidermidis M23864:W1] Length = 200 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 101/205 (49%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + L+ +V+++ G+ Y I P + + ++ +R+D L Sbjct: 1 MYAYVKGTLSQLFPTHVVVETAGIGYEIQTP-NSYRFQTYLDKEVQIYTSLIVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+S+ ++ F+ L V G+G + A+ +L+ T E+ ++I +N + Q PGI K Sbjct: 60 YGFISEEEKDMFLSLIKVTGIGPKSALAILAASTPNEVKQAIENENDAYLTQFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + +++ + + + A+ AL LGY + + + Sbjct: 120 ARQIVLDLKGKVT----INEENSDTLLQVDLNSTEQSQIVKEAMLALEALGYSKRELSK- 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V VL K+ +I + ++L L+ + Sbjct: 175 VEKVLNKQ-SITSVDEAVKLGLQTL 198 >gi|291456789|ref|ZP_06596179.1| holliday junction DNA helicase RuvA [Bifidobacterium breve DSM 20213] gi|291382066|gb|EFE89584.1| holliday junction DNA helicase RuvA [Bifidobacterium breve DSM 20213] Length = 208 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 61/210 (29%), Positives = 98/210 (46%), Gaps = 11/210 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G +E + D LIDV GV Y + LS L G ++ ++ QD + L Sbjct: 1 MIGMLTGRVESVEADTALIDVGGVGYEVRMSATDLSRL-HTGTEARVYTYMNLSQDAVTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GFL ++ F+ L V G+G +VA +LS +TA +L +I ++ +A+ PG+ K Sbjct: 60 HGFLDQASKKTFLQLIKVSGIGPKVAQSLLSTLTAGQLARAIADNDAAALAKAPGLGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELKG S + Q + + I L++LG+ Q A A Sbjct: 120 AQKIILELKG-----SIDLSQIEGASPSGAKVQAQVDTSMEQVIEGLISLGWRQQDAQQA 174 Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205 V + + D +++RLAL + Sbjct: 175 VAEACEDNDIPTPLDTDDVPRVLRLALALM 204 >gi|296170845|ref|ZP_06852406.1| crossover junction ATP-dependent DNA helicase RuvA [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894501|gb|EFG74242.1| crossover junction ATP-dependent DNA helicase RuvA [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 197 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 97/205 (47%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + G+ D+ +I+ GV Y + TL+ L + G L +R+D + L Sbjct: 1 MIASVRGEVLGVALDHAVIEAAGVGYRVNATPSTLATL-RTGTEARLITAMVVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F+ L +V GVG R+AM L+ A L + + + + ++PGI + Sbjct: 60 YGFTDAETRDLFLTLLTVSGVGPRLAMATLAVHDAAALRQVLHDGDVTALTRVPGIGKRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K + ++ A + + + + ALV LG+ QA A Sbjct: 120 AERMVLELRDKVGAAAAAG----------GASVVNGHAVRGPVVEALVGLGFAVKQAEEA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 VL E++ A S +R AL + Sbjct: 170 TDKVLATEQD-ATTSGALRAALSLL 193 >gi|33862917|ref|NP_894477.1| Holliday junction DNA helicase RuvA [Prochlorococcus marinus str. MIT 9313] gi|44888415|sp|Q7V7T9|RUVA_PROMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|33634833|emb|CAE20819.1| putative holliday junction DNA helicase RuvA [Prochlorococcus marinus str. MIT 9313] Length = 225 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 54/221 (24%), Positives = 87/221 (39%), Gaps = 15/221 (6%) Query: 1 MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MIG ++G ++ V++ GV Y + R LS + + L++ R D Sbjct: 1 MIGWLQGQKVEAWQQGTRQGVVLACAGVGYEVQIAPRHLSEMEHGQNTFILWIHQVQRDD 60 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 LFGF +R F L V GVG ++A+ +L ELVE+I+ + + + Q G+ Sbjct: 61 GSSLFGFPERRERDMFRTLIGVSGVGPQMALALLEECQTGELVEAIVQGDLRKLCQAQGV 120 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 + A R+ EL+ K S N S L LGY + Sbjct: 121 GKRTAERLAVELRTKLAEFSCRDPGMSLVDNGVIDSHQLKDSSLHELQITLGGLGYEDLE 180 Query: 177 ATTAVVSVL-----------KKEKNIADDSQIIRLALRAIS 206 A+ +V + +I D +R +LR +S Sbjct: 181 IRRAIRAVASGAAIGASDMPESVPSIDDTDAWLRASLRWLS 221 >gi|7766817|pdb|1D8L|A Chain A, E. Coli Holliday Junction Binding Protein Ruva Nh2 Region Lacking Domain Iii gi|7766818|pdb|1D8L|B Chain B, E. Coli Holliday Junction Binding Protein Ruva Nh2 Region Lacking Domain Iii Length = 149 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 41/144 (28%), Positives = 74/144 (51%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMS 144 A R++ E+K + L + + Sbjct: 121 AERLIVEMKDRFKGLHGDLFTPAA 144 >gi|15674189|ref|NP_268364.1| Holliday junction DNA helicase motor protein [Lactococcus lactis subsp. lactis Il1403] gi|281492890|ref|YP_003354870.1| Holliday junction DNA helicase RuvA [Lactococcus lactis subsp. lactis KF147] gi|13878764|sp|Q9CDL2|RUVA_LACLA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|12725272|gb|AAK06305.1|AE006449_11 DNA helicase RuvA [Lactococcus lactis subsp. lactis Il1403] gi|281376542|gb|ADA66028.1| Holliday junction DNA helicase RuvA [Lactococcus lactis subsp. lactis KF147] Length = 197 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 42/205 (20%), Positives = 90/205 (43%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G + + ++IDV G+ Y+I + + ++V +R+D L Sbjct: 1 MFEYLNGKLVKISPTNIVIDVAGIGYLISV-ANPYAWSALMNTEVKIYVHQVIREDAHSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+++ ++ F+ L SV G+G + A+ +++ L+ +I + K + + PG+ K Sbjct: 60 YGFVNEAEKALFLRLISVSGIGPKSALAIIAAADNEGLITAIDNSDIKYLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK + +V + + AI AL LGY + Sbjct: 120 AMQMVLDLAGKFDATGTVGISLLDAG-------PAGNLALEEAIEALQALGYKATELKKI 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ + I+ AL+ + Sbjct: 173 EKKLAQETG--LTSEEYIKSALKLM 195 >gi|73748284|ref|YP_307523.1| Holliday junction DNA helicase RuvA [Dehalococcoides sp. CBDB1] gi|289432333|ref|YP_003462206.1| Holliday junction DNA helicase RuvA [Dehalococcoides sp. GT] gi|90134867|sp|Q3ZZK6|RUVA_DEHSC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|73660000|emb|CAI82607.1| Holliday junction DNA helicase RuvA [Dehalococcoides sp. CBDB1] gi|288946053|gb|ADC73750.1| Holliday junction DNA helicase RuvA [Dehalococcoides sp. GT] Length = 194 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 14/204 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E +D+ +I+V GV + Y P + + +G +G +F H+R+D + L Sbjct: 1 MISSLNGILEASGKDWAVINVSGVGFRCYMPATSPALIGGLGQRVRVFTHLHVREDALSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F L V G+G ++ + +LS + A L +II N+++++ IPGI K Sbjct: 61 FGFATTEELSLFETLIDVSGIGPKLGLAMLSVMNAEALASAIISGNAELLSTIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 +SRI+ ELK K N E + + + ++ L LGY +A A Sbjct: 121 SSRIILELKDKIAK------------NWEAGVLSQVTEANSDILATLTALGYSSSEAAKA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + S+ + + I+LAL Sbjct: 169 ISSL--GDNGDLPLEERIKLALNY 190 >gi|50842639|ref|YP_055866.1| holliday junction DNA helicase RuvA [Propionibacterium acnes KPA171202] gi|282853888|ref|ZP_06263225.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes J139] gi|81611698|sp|Q6A8K8|RUVA_PROAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|50840241|gb|AAT82908.1| holliday junction DNA helicase RuvA [Propionibacterium acnes KPA171202] gi|282583341|gb|EFB88721.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes J139] Length = 201 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 53/208 (25%), Positives = 96/208 (46%), Gaps = 10/208 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI G + +V++D GV + CP T + +I +L +R++ + L Sbjct: 1 MISHFSGTVSAAGPTWVVLDNHGVGIKVLCPPATAAS-ARINQDMSLHTSLVVREESLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ DR F L+Q+ GVG ++A ++S + A +L +I ++ + ++PGI K Sbjct: 60 YGFVEADDRDAFELVQTASGVGPKLAAAIMSVLDAAQLATAITEEDDATLCRVPGIGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A++++ ELK K +L+ + + LV LG+ A A Sbjct: 120 AAKMILELKDKVAALAPRGASASGATH-------VAAPWREQVAEGLVGLGWSTKDAEKA 172 Query: 181 VVSV--LKKEKNIADDSQIIRLALRAIS 206 V V LK+ ++R ALR+++ Sbjct: 173 VDKVVALKEADPAMSIGNLMRAALRSLA 200 >gi|47097030|ref|ZP_00234603.1| holliday junction DNA helicase RuvA [Listeria monocytogenes str. 1/2a F6854] gi|254898301|ref|ZP_05258225.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes J0161] gi|254912207|ref|ZP_05262219.1| holliday junction DNA helicase RuvA [Listeria monocytogenes J2818] gi|254936535|ref|ZP_05268232.1| holliday junction DNA helicase RuvA [Listeria monocytogenes F6900] gi|47014612|gb|EAL05572.1| holliday junction DNA helicase RuvA [Listeria monocytogenes str. 1/2a F6854] gi|258609129|gb|EEW21737.1| holliday junction DNA helicase RuvA [Listeria monocytogenes F6900] gi|293590180|gb|EFF98514.1| holliday junction DNA helicase RuvA [Listeria monocytogenes J2818] Length = 201 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + +Y++++ + Y I S G +F+ H+R+D I L Sbjct: 1 MYDYIKGTVTTITPEYIVVEAGQIGYQI-ITGNPFSFQRLEGIEAQVFLYQHVREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L SV G+G + A+ +++ L+ +I ++ + + P + K Sbjct: 60 FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLISAIESEDDVYLTKFPSVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK L+ VV ++ V E + + A+ AL LGY + Sbjct: 120 ARQIILDLKGK---LADVVASEIVYVAPENDMVAGLSPQLEEAVLALEALGYSTRELKKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + K+ I+LAL+ + Sbjct: 177 IPKLAKEA--DLTSDAYIKLALQLM 199 >gi|283457993|ref|YP_003362600.1| holliday junction resolvasome, DNA-binding subunit [Rothia mucilaginosa DY-18] gi|283134015|dbj|BAI64780.1| holliday junction resolvasome, DNA-binding subunit [Rothia mucilaginosa DY-18] Length = 209 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 103/207 (49%), Gaps = 12/207 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + D+ +IDV G +++ RTLS L + G+ T+ +R++ + L Sbjct: 4 MIASLTGRVAQVGLDHAVIDVNGFGMLVHATARTLSKL-RTGEEATVLTTMIVREESMTL 62 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F ++ SV G+G R+A+ VLS TA E+ ++ + K ++PGI K Sbjct: 63 YGFSEPAEREVFDMMLSVSGIGPRIALAVLSVHTAAEVERAVATGDDKAFTKVPGIGPKG 122 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL GK I +S ++ + + + AL +LG+ + A+ A Sbjct: 123 ARRIVLELAGKLI---------LSDGQTDELPLSQGIVWKPQVLDALTSLGWSEKDASAA 173 Query: 181 VVSVLKKEKNIAD--DSQIIRLALRAI 205 + + +K + +R L ++ Sbjct: 174 IDAYVKHNPSAESEPVGVALRGVLASL 200 >gi|213692039|ref|YP_002322625.1| Holliday junction DNA helicase RuvA [Bifidobacterium longum subsp. infantis ATCC 15697] gi|254766945|sp|B7GR17|RUVA_BIFLI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|213523500|gb|ACJ52247.1| Holliday junction DNA helicase RuvA [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458151|dbj|BAJ68772.1| holliday junction DNA helicase RuvA [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 208 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 60/210 (28%), Positives = 98/210 (46%), Gaps = 11/210 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G +E + D LIDV GV Y P L L G +F ++ QD + L Sbjct: 1 MIGMLTGRVESVETDTALIDVGGVGYETRMPATDLGRLHA-GQDACVFTYLNLSQDSVTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL ++ F+ L V G+G +VA +L +T ++L +I ++ +A+ PG+ K Sbjct: 60 YGFLDRDSKRVFLQLIKVSGIGPKVAQSLLGTMTPSQLARAIADNDAAALAKAPGLGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELKG S + Q + ++ + + LV+LG+ Q A A Sbjct: 120 AQKIILELKG-----SVDLNQSDDASAGNAPYQPTVDAGVEQVVEGLVSLGWRQQDAQRA 174 Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205 V + D +++RLAL + Sbjct: 175 VNEACAENDVPMPLASDDAPRVLRLALARM 204 >gi|237785621|ref|YP_002906326.1| holliday junction DNA helicase [Corynebacterium kroppenstedtii DSM 44385] gi|259495637|sp|C4LIX8|RUVA_CORK4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|237758533|gb|ACR17783.1| holliday junction DNA helicase [Corynebacterium kroppenstedtii DSM 44385] Length = 207 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 88/207 (42%), Gaps = 5/207 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + +YV+I+ GV Y L L + G+ + V ++R D I L Sbjct: 1 MIDSLHGEVLHVGLNYVVIECSGVGYRATASPSLLGTL-RKGEDARILVTMNVRDDGIDL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 + F SD RQ F +L+ V GVG AM + S E I ++ + + GI + Sbjct: 60 YAFESDEARQMFAMLRKVSGVGPTSAMAICSIFKPDEFARIITDEDDAELRNVKGIGKRT 119 Query: 121 ASRIMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ +LK K S + + ALV LG+ + QA Sbjct: 120 AERIIVDLKSKVAVFDSGDSASEPQSGVGGNSEAEVDSGVVGTVTQALVELGFPEKQAEK 179 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 S + S+I++ ALR++S Sbjct: 180 TATSAAAEGG---SVSEILKRALRSMS 203 >gi|119383447|ref|YP_914503.1| Holliday junction DNA helicase motor protein [Paracoccus denitrificans PD1222] gi|166230580|sp|A1AZW3|RUVA_PARDP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|119373214|gb|ABL68807.1| Holliday junction DNA helicase RuvA [Paracoccus denitrificans PD1222] Length = 223 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 72/221 (32%), Positives = 115/221 (52%), Gaps = 16/221 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+I G I +D+VLIDV+GV YI++ RT + L G L+ E +R+D ++L Sbjct: 1 MIGRIAGVILHRAQDHVLIDVRGVGYIVHVSERTAANLPPAGQATALYTELLVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + L+++W LL SVQGVGA+VA+ +L + L ++ L + + + PG+ K+ Sbjct: 61 FGFPTLLEKEWHRLLTSVQGVGAKVALAILGTLGPDGLSRALALGDWSALRKAPGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQ---------------QDMSCVNKEQAHICSMPSFAINAIS 165 A R++ ELK KA ++ ++ + S +A+S Sbjct: 121 AQRVVMELKDKAPAVMALGGALTVDPGPLPEVELVEAAVPAPVPAKAAPSSAQATADALS 180 Query: 166 ALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 AL NLGY +A +AV +E + +IR ALR ++ Sbjct: 181 ALGNLGYAPSEAASAVAEAAAREPAAP-TAALIRAALRLLA 220 >gi|302533404|ref|ZP_07285746.1| Holliday junction DNA helicase RuvA [Streptomyces sp. C] gi|302442299|gb|EFL14115.1| Holliday junction DNA helicase RuvA [Streptomyces sp. C] Length = 209 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 54/212 (25%), Positives = 94/212 (44%), Gaps = 12/212 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L +I+V GV + C T++ L ++G+ L +R+D + L Sbjct: 1 MIAFVSGQVAALAPTLAVIEVGGVGMAVQCTPNTIAGL-RVGEPARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG RVA +L T L + ++K + +PGI K Sbjct: 60 YGFADDDERQVFELLQTASGVGPRVAQAMLGVHTPDALRVAFAAGDAKALTAVPGIGPKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ + ++ + + +AL+ LGY A A Sbjct: 120 AQKLLL-----ELKGKLGAPGGVAVGAQRAPAAAGPAPWTEQLTAALIGLGYASRDAEEA 174 Query: 181 VVSVLKK------EKNIADDSQIIRLALRAIS 206 V +V + A Q++R AL++++ Sbjct: 175 VSAVTPQAEAAIASGGSAPVPQLLRAALQSLN 206 >gi|312143984|ref|YP_003995430.1| Holliday junction DNA helicase RuvA [Halanaerobium sp. 'sapolanicus'] gi|311904635|gb|ADQ15076.1| Holliday junction DNA helicase RuvA [Halanaerobium sp. 'sapolanicus'] Length = 200 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 96/205 (46%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + L +IDV GV Y L +GD L++ T++R+D ++L Sbjct: 1 MIGFLEGELIYLEAGQAIIDVNGVGYETELAG--FDDLPTVGDDIELYIYTYVREDALKL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 F F S D++ F +L +V G+G + + +++ + A + +I+ +N V+ +I GI K Sbjct: 59 FAFPSRKDKELFEILITVNGIGPKAGLNIINTMPADRFISAIMQENELVLKKISGIGPKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+GK + S + + + AL LGY + A Sbjct: 119 AQRLILELQGKLEDFVYLKSGQKSSTTSKI-----ENEDRQDVVDALTALGYKISEINKA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + ++ S+ IR L + Sbjct: 174 LRKISFEDGIA--VSEKIRQVLSYL 196 >gi|332685820|ref|YP_004455594.1| holliday junction DNA helicase RuvA [Melissococcus plutonius ATCC 35311] gi|332369829|dbj|BAK20785.1| holliday junction DNA helicase RuvA [Melissococcus plutonius ATCC 35311] Length = 201 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 88/205 (42%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G I + Y++I+ G+ Y I GK+ +++ +R+D L Sbjct: 1 MFEYIIGTITFINPYYLVIETNGIGYQILVS-NPYHYSGKLEKKVKIYLHQVIREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++Q F+ L V G+G + A+ +L+ L+ +I +N+ + + PG+ K Sbjct: 60 YGFREMEEKQLFLKLIGVSGIGPKSALAILALEDHGGLINAIADENASYLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK L + N+ + A+ AL LGY + Sbjct: 120 AQQMVLDLKGKLDELEMTPTAVKAMTNQPKVKT---NQALNEALEALCALGYNDREIKRI 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + K + Q + AL+ I Sbjct: 177 TPDL--KSMDSQSTDQYLSQALKLI 199 >gi|282897835|ref|ZP_06305832.1| DNA recombination protein, RuvA [Raphidiopsis brookii D9] gi|281197319|gb|EFA72218.1| DNA recombination protein, RuvA [Raphidiopsis brookii D9] Length = 214 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 56/213 (26%), Positives = 94/213 (44%), Gaps = 14/213 (6%) Query: 1 MIGKIKGNIEGLYEDY-----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55 MI +KG + G+ + ++V G+ Y +Y P R + L GD +F +R+ Sbjct: 1 MISYLKGIVAGVQTGSPNRWILTLEVNGIGYDVYIPQRLANQLTNNGDVTHIFTHYQIRE 60 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 + L+GF S +R F L SV G+G +A+ ++ + ELV++II N+ ++ Q PG Sbjct: 61 ELPILYGFSSPAERDLFRHLLSVTGIGTAMAISLIDTLELPELVQAIISGNTIMLIQTPG 120 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 + K A R+ ELKGK + A P+ L LGY Sbjct: 121 VGKKTAERLCLELKGKLVEWR-------KSAGFFVATGGPPPAILEEVQMTLFALGYTPH 173 Query: 176 QATTAVVSVLKK--EKNIADDSQIIRLALRAIS 206 + + A+ + + A I+ A+ +S Sbjct: 174 EVSHALHVISEDIGLPKNAYPEDWIKQAIAHLS 206 >gi|289434813|ref|YP_003464685.1| holliday junction DNA helicase RuvA [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171057|emb|CBH27599.1| holliday junction DNA helicase RuvA [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 201 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 93/205 (45%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG I + +Y++++ + Y I S G +F+ H+R+D I L Sbjct: 1 MYDYIKGTITTITPEYIVVETGQIGYQI-ITGNPFSFQRLEGTDAQVFLYQHVREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L SV G+G + A+ +++ L+ +I ++ + + P + K Sbjct: 60 FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLITAIESEDDVYLTKFPSVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK L+ V ++ E + + A+ AL LGY + Sbjct: 120 ARQIILDLKGK---LADVATNEIIYNVPENDIVAGLSPALEEAVLALEALGYSTRELKKI 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + K+ I+LALR + Sbjct: 177 IPKLAKEV--DLTSDAYIKLALRLM 199 >gi|16800636|ref|NP_470904.1| Holliday junction DNA helicase RuvA [Listeria innocua Clip11262] gi|20455250|sp|Q92BI1|RUVA_LISIN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|16414055|emb|CAC96799.1| ruvA [Listeria innocua Clip11262] gi|313618794|gb|EFR90690.1| holliday junction DNA helicase RuvA [Listeria innocua FSL S4-378] Length = 201 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 95/205 (46%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG ++ + +Y++++ + Y I S G +F+ H+R+D I L Sbjct: 1 MYDYIKGIVKTITPEYIVVETGQIGYQI-ITGNPFSFQRLEGTEAQVFLYQHVREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L SV G+G + A+ +++ L+ +I ++ + + P + K Sbjct: 60 FGFQSTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLITAIESEDDVYLTKFPSVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK L+ VV ++ E + + A+ AL LGY + Sbjct: 120 ARQIILDLKGK---LADVVASEIVYKAAENDIVTGLSPQLEEAVLALEALGYSTRELKKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + K+ I+LALR + Sbjct: 177 IPKMAKEN--DLTSDAYIKLALRLM 199 >gi|326407801|gb|ADZ64872.1| holliday junction DNA helicase RuvA [Lactococcus lactis subsp. lactis CV56] Length = 197 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 42/205 (20%), Positives = 90/205 (43%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G + + ++IDV G+ Y+I + + ++V +R+D L Sbjct: 1 MFEYLNGKLVKISPTNIVIDVAGIGYLISV-ANPYAWSALMNTEVKIYVHQVIREDAHSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+++ ++ F+ L SV G+G + A+ +++ L+ +I + K + + PG+ K Sbjct: 60 YGFVNEAEKALFLRLISVSGIGPKSALAIIAAADNEGLITAIDNSDIKYLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK + +V + + AI AL LGY + Sbjct: 120 AIQMVLDLAGKFDATGTVGISLLDAG-------PAGNLALEEAIEALQALGYKATELKKI 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ + I+ AL+ + Sbjct: 173 EKKLAQETG--LTSEEYIKSALKLM 195 >gi|228476722|ref|ZP_04061391.1| holliday junction DNA helicase RuvA [Streptococcus salivarius SK126] gi|228251671|gb|EEK10768.1| holliday junction DNA helicase RuvA [Streptococcus salivarius SK126] Length = 196 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 88/205 (42%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++I+ G+ YI+ S ++ +++ +R D L Sbjct: 1 MYDYIKGTLVKITAKYIVIEANGLGYIVTV-ANPYSFSDQMNQTIQVYLHQVIRDDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +++ F+ L SV G+G A+ +++ LV ++ + K + + P I K Sbjct: 60 FGFHTEDEKEVFLKLISVSGIGPTTALAIVAVDDNQGLVAAVDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK L + K A+ AL+ LGY + Sbjct: 120 AQQMVLDLAGKFAEL-------PTETTKTTPSQPEGNHQLDEAMEALLALGYKAAELKK- 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + E Q I+ AL+ + Sbjct: 172 IKAFF--EGTNETAEQYIKSALKML 194 >gi|306821186|ref|ZP_07454801.1| crossover junction ATP-dependent DNA helicase RuvA [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550772|gb|EFM38748.1| crossover junction ATP-dependent DNA helicase RuvA [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 201 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 93/205 (45%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G + ++V+++ + Y + T L ++ T++ +++D + L Sbjct: 1 MIDYISGTVVQKGLNHVVVECNNIGYKLLVSQNTSYEL-ELEKISTVYTHLIVKEDDLSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF + +R F +L SV +GA++A+ +LS TAT++ I + + ++ G+ K Sbjct: 60 IGFSNMSERDMFRILISVSKIGAKIALSILSTYTATQIATFIKSADVVSLGKVSGLGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + + I I AL LG+ +A ++ Sbjct: 120 AERLVLELKDKVDIFVGSEE----IAKIRKDDIPQEDEKMSQVIEALTMLGFSNKEAVSS 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +K+ AD +I+ +L + Sbjct: 176 AEKVYALDKD-ADVQSLIKSSLALL 199 >gi|226306411|ref|YP_002766371.1| Holliday junction DNA helicase RuvA [Rhodococcus erythropolis PR4] gi|259495653|sp|C0ZZ47|RUVA_RHOE4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226185528|dbj|BAH33632.1| Holliday junction DNA helicase RuvA [Rhodococcus erythropolis PR4] Length = 199 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +I+ GV Y + TL L + G LF +R+D + L Sbjct: 1 MIASVRGEVLDIALDHAVIEASGVGYRVNATPVTLGALHR-GSEARLFTTMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + F LLQ+V GVG R+AM L+ + L ++ N + ++PGI + Sbjct: 60 YGFSDTESKDLFSLLQTVSGVGPRLAMATLAVLEPDALRRALSEGNLTALTRVPGIGKRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K ++++ V S + AL LG+ QA A Sbjct: 120 AERMVVELRDKVDAVATTAGAASGAV--------VGSSIRDQIVEALEGLGFPIKQAEQA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 SVL + A S +R AL + Sbjct: 172 TDSVLAESPE-ATTSVALRSALSLL 195 >gi|116074623|ref|ZP_01471884.1| putative holliday junction DNA helicase RuvA [Synechococcus sp. RS9916] gi|116067845|gb|EAU73598.1| putative holliday junction DNA helicase RuvA [Synechococcus sp. RS9916] Length = 224 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 52/213 (24%), Positives = 91/213 (42%), Gaps = 8/213 (3%) Query: 1 MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MIG ++G + ++I GV Y + + L + CT ++ R+D Sbjct: 9 MIGWLQGERIDSWVQGGRQGLVIACGGVGYEVQFTSGHRTRL-EAERQCTAWIHQVQRED 67 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GFL +R F L SV GVG ++A+ +L AT LV++I+ + + + Q G+ Sbjct: 68 GCMLYGFLEKRERDLFRTLISVNGVGPQMALALLESCGATALVDAIVEGDLRQLTQAQGV 127 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS-MPSFAINAISALVNLGYGQD 175 + A R+ EL+ + S + +S V++ L LGY Sbjct: 128 GKRTAERLAVELRDRLGSWRAPADDGLSLVDRSDLKALPLQGDPLQELQQTLEALGYEDL 187 Query: 176 QATTAVVSV--LKKEKNIADDSQIIRLALRAIS 206 + A+ +V + D +R +LR +S Sbjct: 188 EIRRAMRAVATAAEPPAAGDHDAWLRESLRWLS 220 >gi|302541121|ref|ZP_07293463.1| Holliday junction DNA helicase RuvA [Streptomyces hygroscopicus ATCC 53653] gi|302458739|gb|EFL21832.1| Holliday junction DNA helicase RuvA [Streptomyces himastatinicus ATCC 53653] Length = 206 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 60/212 (28%), Positives = 101/212 (47%), Gaps = 15/212 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L + +I+V GV + C TLS L +IG+ L +R+D + L Sbjct: 1 MIAFVSGPVAALAPNTAVIEVGGVGMALQCTPGTLSGL-RIGEAARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ L ++ + K + +PGI K Sbjct: 60 YGFADDDERQVFELLQTASGVGPRLAQAMLAVHAPDALRLAVSTGDEKALTAVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK + + A + ++ +ALV LGY +A A Sbjct: 120 AQKLLLELKDRL--------GEPVGTTVPAARPPAAAGWSDQLHTALVGLGYATREADEA 171 Query: 181 VVSVLKK------EKNIADDSQIIRLALRAIS 206 V +V + E + +Q++R AL+ ++ Sbjct: 172 VSAVTPQAEAALAEGGMPQVAQLLRAALQTLN 203 >gi|78044333|ref|YP_360355.1| Holliday junction DNA helicase RuvA [Carboxydothermus hydrogenoformans Z-2901] gi|90134706|sp|Q3ABX9|RUVA_CARHZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|77996448|gb|ABB15347.1| Holliday junction DNA helicase RuvA [Carboxydothermus hydrogenoformans Z-2901] Length = 195 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 51/206 (24%), Positives = 95/206 (46%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + D V++DV G+ + + R L L + ++ +R+D L Sbjct: 1 MIAVLKGKVLDKTLDSVVVDVNGIGFKVAVLPRELGSL-NLNSEVVMYTSLQVREDGWFL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + R++F LL SV G+G + A+ +L+ T +L I ++ K + ++PG+ K Sbjct: 60 YGFSDEETRKFFDLLLSVSGIGPKAALAILNEFTPEKLNWVIANKDEKALTKVPGVGKKN 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ELK K + + + + + L++LG +A Sbjct: 120 AQRLFLELKDKIGY---------TSFTSNEESVENFQDLWGDVYKGLLSLGLSAAEAREI 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + KK ++ + I LALR ++ Sbjct: 171 LGKIDKK--SVKTPEEGIALALRFLN 194 >gi|260910076|ref|ZP_05916757.1| crossover junction endoribonuclease subunit A [Prevotella sp. oral taxon 472 str. F0295] gi|260635788|gb|EEX53797.1| crossover junction endoribonuclease subunit A [Prevotella sp. oral taxon 472 str. F0295] Length = 205 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 57/208 (27%), Positives = 94/208 (45%), Gaps = 7/208 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM---RQDQ 57 MI IKG++ L +I+ GV Y + + T S + E + R D Sbjct: 1 MIEYIKGDLAELTPAMAVIEAAGVGYALNISLNTYSAIQGKDKLKLFVHEALVTGGRDDS 60 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 L+GF + +R+ + LL SV GVGA A +LS ++ +EL I + K++ + GI Sbjct: 61 YTLYGFATRQERELYRLLISVSGVGANSARMILSGMSPSELCNVIAAGDDKMLKTVKGIG 120 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 K A RI+ +LK K + V + A+ AL LG+ + Sbjct: 121 AKTAQRIIVDLKDKI---MTSGVAQELSVPTNANANAMNAAVKDEAVGALTMLGFAPATS 177 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 VV +LK++ ++ Q+++ AL+ I Sbjct: 178 AKVVVEILKEQPDLP-VEQVVKAALKMI 204 >gi|78184871|ref|YP_377306.1| Holliday junction DNA helicase RuvA [Synechococcus sp. CC9902] gi|123770922|sp|Q3AVK0|RUVA_SYNS9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|78169165|gb|ABB26262.1| Holliday junction DNA helicase subunit RuvA [Synechococcus sp. CC9902] Length = 214 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 51/214 (23%), Positives = 87/214 (40%), Gaps = 12/214 (5%) Query: 1 MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MIG ++G + VL+ GV Y + R L + TL++ R+D Sbjct: 1 MIGWLQGRHMECWTQGNRSGVLLVCAGVGYEVQLTSRHQKQL-QPDSELTLWIHQVQRED 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 LFGF S +R F LL V GVG + + +L ELV +I + K + Q GI Sbjct: 60 GSSLFGFPSRQERDLFRLLIGVNGVGPQAGLALLHECKPQELVAAISGGDLKRLCQAQGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 + A R+ +L+ + + Q +P + + L++LGY + + Sbjct: 120 GKRTAERLAVDLRTPIAAFGGLEPQPSLVEG---LASEQIPEAGEDVEATLISLGYDELE 176 Query: 177 ATTAVVSVLKKE----KNIADDSQIIRLALRAIS 206 A+ ++ + D +R L+ +S Sbjct: 177 IRRAIRAIADGASGVPPSGTDQDGWLRSCLQWLS 210 >gi|116070445|ref|ZP_01467714.1| DNA recombination protein, RuvA [Synechococcus sp. BL107] gi|116065850|gb|EAU71607.1| DNA recombination protein, RuvA [Synechococcus sp. BL107] Length = 214 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 50/214 (23%), Positives = 86/214 (40%), Gaps = 12/214 (5%) Query: 1 MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MIG ++G + VL+ GV Y + R L + TL++ R+D Sbjct: 1 MIGWLQGRHMECWTQGNRSGVLLVCAGVGYEVQLTSRHQKQL-QPDSELTLWIHQVQRED 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 LFGF +R F LL V GVG + + +L ELV +I + K + Q GI Sbjct: 60 GSSLFGFPCRQERDLFRLLIGVNGVGPQAGLALLHECKPHELVAAISGGDLKRLCQAQGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 + A R+ +L+ + + Q +P + + L++LGY + + Sbjct: 120 GKRTAERLAVDLRTPIAAFGGLDPQPSLVEG---LASEQIPEAGEDVEATLISLGYDELE 176 Query: 177 ATTAVVSVLKKE----KNIADDSQIIRLALRAIS 206 A+ ++ + D +R L+ +S Sbjct: 177 IRRAIRAIADGASGVPPSGTDQDGWLRSCLQWLS 210 >gi|332188826|ref|ZP_08390535.1| holliday junction DNA helicase RuvA [Sphingomonas sp. S17] gi|332011136|gb|EGI53232.1| holliday junction DNA helicase RuvA [Sphingomonas sp. S17] Length = 199 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 70/206 (33%), Positives = 109/206 (52%), Gaps = 8/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG ++ D+ +IDV GV Y++ RTLS +G +G+ L E + +D IRL Sbjct: 1 MIAHLKGRLDSTGIDHAVIDVGGVGYLVGASARTLSVIGSVGEAAMLHTEMLVSEDSIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF S +R WF LL VQGVG+RVA+ +LS + +L+ +I + ++A+ G+ K+ Sbjct: 61 VGFASADERDWFRLLTGVQGVGSRVALAILSALEPADLMRAIASGDKAMVARANGVGPKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + A + +SAL+NLG+ +A+ A Sbjct: 121 AQRIVMELKDKVGGIVLAPGSGGGAAATVGAGADA--------VSALLNLGFRPAEASAA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V S ++ A ++RLALR + Sbjct: 173 VASAEEELGASASLDALVRLALRKAA 198 >gi|29839888|ref|NP_828994.1| Holliday junction DNA helicase motor protein [Chlamydophila caviae GPIC] gi|33301629|sp|Q824M5|RUVA_CHLCV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|29834235|gb|AAP04872.1| Holliday junction DNA helicase RuvA [Chlamydophila caviae GPIC] Length = 207 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 99/205 (48%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 M I+G + + ++I+ QG+ + I+ P R L L G++ ++ T +R+ + Sbjct: 1 MYDYIRGILTYMSSGTLVIECQGLGFNIFAPDRWLIELSGQLHREVVVYTYTVVRETEHV 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF S +R+ F +L S GVG + + +L+ + ++L ++ + IA +PGI K Sbjct: 61 LYGFSSRRERECFRMLISFSGVGPKTGLAILNTFSLSKLCSIARAEDVRAIASVPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A ++M +LK K L + + ++ PS I AL LGY + A Sbjct: 121 TAEKLMVDLKQKLPDLLPLDSKAIASW------ESVKPSCMDEGIQALAALGYSKPSAER 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + + + A ++I+ +AL+ Sbjct: 175 MIAEAMSELPENASLAEILPIALKK 199 >gi|15806292|ref|NP_294998.1| Holliday junction DNA helicase RuvA [Deinococcus radiodurans R1] gi|20455276|sp|Q9RUV7|RUVA_DEIRA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|6459015|gb|AAF10840.1|AE001974_5 Holliday junction binding protein [Deinococcus radiodurans R1] Length = 201 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 91/205 (44%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + E ++ GV Y + CP L+ L K G+ +R+D L Sbjct: 1 MIAYLSGVVREVREGSAVVVAGGVGYEVQCPAGMLARL-KPGEAAEFSTRFIVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + F LL SV GVG ++ + +LS + + L +I + K+++ + G+ K Sbjct: 60 FGFPDADHLKLFDLLTSVSGVGPKLGLALLSAMPVSALAAGLIGGDVKLLSSVSGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ EL K + S + + +A+ AL+ LG+ + Q A Sbjct: 120 AERLALELSSKVPE---HLAAAASGAAGGKRPARVSSTAGHDAVDALLALGFREAQVRAA 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +L + A +IR AL + Sbjct: 177 VAELLGADPE-ASADTLIRKALGRL 200 >gi|42523918|ref|NP_969298.1| Holliday junction DNA helicase RuvA [Bdellovibrio bacteriovorus HD100] gi|81616890|sp|Q6MKB7|RUVA_BDEBA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|39576125|emb|CAE80291.1| Holliday junction DNA helicase RuvA [Bdellovibrio bacteriovorus HD100] Length = 196 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 16/207 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKI-GDFCTLFVETHMRQDQIR 59 MIG ++G I + D LIDV GV Y I+ TL L + G+ +++ TH+R+D ++ Sbjct: 1 MIGYLRGKIIEVMNDSALIDVSGVGYEIHASSNTLGDLQALLGNDIIVWIHTHVREDALQ 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF ++ F+ L V GVG ++A+ +LS ++ E I N+K ++ +P + K Sbjct: 61 LFGFHDKEEKNLFLSLLKVNGVGPKMALSILSGGRPAQIHEMIEAGNAKALSGLPKVGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I+ LKGK +S+ + SAL+NLGY + Sbjct: 121 TAEQIILTLKGKLVSIEEG-----------GVVAKAKSVAHTQITSALLNLGYK----SQ 165 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 V + IR + +S Sbjct: 166 LVDQFVSSLPADIAVEDGIRKGFQTLS 192 >gi|291165807|gb|EFE27855.1| holliday junction DNA helicase RuvA [Filifactor alocis ATCC 35896] Length = 198 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 96/206 (46%), Gaps = 10/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G IE L D +L+ GV Y I T+ K L+ + +R+D I L Sbjct: 1 MIGLLYGEIEELSLDSILLVCSGVGYEIQVSQNTMEH-CKQHSNIRLYTKMIVREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF +++ F L SV +G +V + +LS ++ I+ N + ++++ G+ K Sbjct: 60 IGFFEKSEKELFEQLTSVSKIGPKVGLSILSTYQVDQIKSYIVTANIEKLSKVSGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K N + +AI ALV+LG+ ++++ A Sbjct: 120 AERIVLELKDKISHFE--------IDNDAIEIASPINQTEDDAIEALVSLGFSKNESYDA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V V K++ ++I LAL +S Sbjct: 172 VQEV-KQQYTAQSLDELIPLALSKLS 196 >gi|322517658|ref|ZP_08070523.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus vestibularis ATCC 49124] gi|322123735|gb|EFX95320.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus vestibularis ATCC 49124] Length = 196 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++I+ G+ YII S ++ +++ +R D L Sbjct: 1 MYDYIKGTLVKITAKYIVIEANGLGYIITV-ANPYSFSDQLNQTIQVYLHQVIRDDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +++ F+ L SV G+G A+ +++ LV ++ + K + + P I K Sbjct: 60 FGFHTEDEKEVFLKLISVSGIGPTTALAIVAVDDNQGLVAAVDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK L + K A+ AL+ LGY + Sbjct: 120 AQQMVLDLAGKFAEL-------PTETTKTTPSQPEGNHQLDEAMEALLALGYKAAELKKI 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V E Q I+ AL+ + Sbjct: 173 --KVFF-EGTNETAEQYIKSALKML 194 >gi|213966124|ref|ZP_03394311.1| holliday junction DNA helicase RuvA [Corynebacterium amycolatum SK46] gi|213951222|gb|EEB62617.1| holliday junction DNA helicase RuvA [Corynebacterium amycolatum SK46] Length = 206 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 100/205 (48%), Gaps = 2/205 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + L DY +I+ GV +++ R S L + + + +R+D I L Sbjct: 1 MIASLRGEVIDLGADYCVIECGGVGHLVTITGRLASQLVR-HEQTFMLTTMAVREDAITL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F LL++V VG +VAM VLS ++ E+ ++ +N+K + G+ ++ Sbjct: 60 FGFANSQEREMFALLRTVSTVGPKVAMSVLSVLSPAEIANAVASKNAKALQAANGVGKRL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + A + + + ALV LG+ + A A Sbjct: 120 AERLLVELKDKVEVFADRAVSQPEEAASGAAPGIVLKADLDQVVGALVGLGFPEADANEA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 +V++ + D ++ AL+ + Sbjct: 180 AETVVRIDP-TLDTPMALKAALKTL 203 >gi|23010264|ref|ZP_00051013.1| COG0632: Holliday junction resolvasome, DNA-binding subunit [Magnetospirillum magnetotacticum MS-1] Length = 182 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 70/166 (42%), Positives = 105/166 (63%), Gaps = 2/166 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ ED+V++DV GV Y+++C RTL L K G+ L +ETH+R+D IRL Sbjct: 1 MIGKLKGLVDSYGEDFVILDVNGVGYVVHCSARTLQRLPKPGEATDLAIETHVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF SD +R+WF LLQ+VQGVG RVA+GVLS + L +I + IA+ PG+ ++ Sbjct: 61 YGFRSDAEREWFRLLQTVQGVGTRVALGVLSVLEPEALATAIATGDKGAIARAPGVGPRL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166 A+R++ ELK KA + + + ++ + P +AISA Sbjct: 121 AARLVAELKDKAPAFAPIDPALVALTGAVEDRTAPQP--VADAISA 164 >gi|154149661|ref|YP_001403279.1| Holliday junction DNA helicase RuvA [Candidatus Methanoregula boonei 6A8] gi|153998213|gb|ABS54636.1| Holliday junction DNA helicase RuvA [Methanoregula boonei 6A8] Length = 201 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 101/205 (49%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + +V++DV G+ Y ++ P + + G L +R+D I L Sbjct: 1 MIAYLEGTPAATGDRWVVLDVNGIGYRVHVPEPEVREIAGAGTKVKLHTYMAVREDAITL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + + + F ++ V G+G ++A+ +LS+I+ + V +I+ + K + +I GI K Sbjct: 61 YGFLHESELELFTVIIGVSGIGPQIALNILSQISLEDFVLAILSGDEKSLTRISGIGPKG 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K + + + + +A SALV+LG+ + + A Sbjct: 121 AKRLILELRDKMKKVQDAMTHTPAG---------RQDATLRDAASALVSLGFAEAASYDA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V S + +I++ ALR + Sbjct: 172 VASAARGLA-APTVQEIVKAALRLL 195 >gi|296129641|ref|YP_003636891.1| Holliday junction DNA helicase RuvA [Cellulomonas flavigena DSM 20109] gi|296021456|gb|ADG74692.1| Holliday junction DNA helicase RuvA [Cellulomonas flavigena DSM 20109] Length = 202 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 55/208 (26%), Positives = 92/208 (44%), Gaps = 14/208 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + D +++V GV ++ TL+ L ++G L +R+D + L Sbjct: 1 MIASVHGTVLAVRLDSAVLEVGGVGLLVQATPATLAGL-RVGQPGRLSTSLVVREDALTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF D +R F +Q+V GVG R+A+ +L+ T L ++ ++ + ++PGI K Sbjct: 60 FGFADDDERDVFETVQTVSGVGPRLALAMLAVHTPDGLRRAVAQEDIAALMRVPGIGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL + + + ALV LG+ A A Sbjct: 120 AQRIVLELGERLG----------APDPTGGTPAAPSADHREQVVEALVGLGWPLRAAQDA 169 Query: 181 VVSVLKKEK---NIADDSQIIRLALRAI 205 V SVL + ++R ALR + Sbjct: 170 VASVLDGSAVPVGAGEVPGVLRAALRTL 197 >gi|124023288|ref|YP_001017595.1| Holliday junction DNA helicase RuvA [Prochlorococcus marinus str. MIT 9303] gi|123963574|gb|ABM78330.1| putative holliday junction DNA helicase RuvA [Prochlorococcus marinus str. MIT 9303] Length = 233 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 54/221 (24%), Positives = 86/221 (38%), Gaps = 15/221 (6%) Query: 1 MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MIG ++G ++ V++ GV Y + R LS + + L++ R D Sbjct: 9 MIGWLQGQKVEAWQQGTRQGVVLACAGVGYEVQIAPRHLSEMEHGQNTFILWIHQVQRDD 68 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 LFGF +R F L V GVG ++A+ +L ELVE+I+ + + + Q G+ Sbjct: 69 GSSLFGFPERRERDMFRTLIGVSGVGPQMALALLEECQTGELVEAIVQGDLRKLCQAQGV 128 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 + A R+ EL+ K S N S L LGY + Sbjct: 129 GKRTAERLAVELRTKLAEFSCRDPGMSLVDNGVIDSHQLKDSSLHELQITLGGLGYEDLE 188 Query: 177 ATTAVVSVL-----------KKEKNIADDSQIIRLALRAIS 206 A+ +V + I D +R +LR +S Sbjct: 189 IRRAIRAVASGAAIGARDMPESVPAIDDTDAWLRASLRWLS 229 >gi|332523205|ref|ZP_08399457.1| Holliday junction DNA helicase RuvA [Streptococcus porcinus str. Jelinkova 176] gi|332314469|gb|EGJ27454.1| Holliday junction DNA helicase RuvA [Streptococcus porcinus str. Jelinkova 176] Length = 197 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 93/205 (45%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG ++ + Y++++ G+ YIIY S + T+++ +R+D L Sbjct: 1 MFDYIKGKLKKITAKYIVVEANGLGYIIYV-ANPYSFTDSVNQNVTIYLHQVIREDAHIL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +D ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTDDEKDVFLKLISVSGIGPMTALAIVAVDDNQGLVRAIDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK + S QQ + AI AL+ LGY + Sbjct: 120 AQQMILDLAGKFVDSSEPSQQQSQA-------KRNSNQQLDEAIEALLALGYKATELKK- 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + E Q I+LAL+ + Sbjct: 172 IRAFF--EGTDETAEQYIKLALKML 194 >gi|225869418|ref|YP_002745366.1| Holliday junction DNA helicase RuvA [Streptococcus equi subsp. zooepidemicus] gi|259495656|sp|C0MGC2|RUVA_STRS7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|225702694|emb|CAX00805.1| Holliday junction DNA helicase RuvA [Streptococcus equi subsp. zooepidemicus] Length = 198 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 89/205 (43%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ Y+I S + T+++ +R+D L Sbjct: 1 MYDYIKGQLTKITAKYIVVEANGLGYMITV-ANPYSFTDCVNQQVTIYLHQVIREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S+ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHSEEEKDVFLKLISVSGIGPTTALAIVAVDDNRGLVNAIDNSDIKYLMRFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK V+ +K A+ AL+ LGY + Sbjct: 120 AQQMVLDLAGKF------VEAPKEESSKPPKAKQQGNEQLDEAVEALLALGYKATELKK- 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + E Q I+ AL+ + Sbjct: 173 IRAFF--EGTSETAEQYIKSALKML 195 >gi|313633143|gb|EFS00032.1| holliday junction DNA helicase RuvA [Listeria seeligeri FSL N1-067] gi|313637717|gb|EFS03086.1| holliday junction DNA helicase RuvA [Listeria seeligeri FSL S4-171] Length = 201 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 93/205 (45%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG I + +Y++++ + Y I S G +F+ H+R+D I L Sbjct: 1 MYDYIKGIITTITPEYIVVETGQIGYQI-ITGNPFSFQRLEGTDAQVFLYQHVREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L SV G+G + A+ +++ L+ +I ++ + + P + K Sbjct: 60 FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLITAIESEDDVYLTKFPSVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK L+ V ++ E + + A+ AL LGY + Sbjct: 120 ARQIILDLKGK---LADVATNEIIYNVPENDIVAGLSPALEEAVLALEALGYSTRELKKI 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + K+ I+LALR + Sbjct: 177 IPKLAKEA--DLTSDAYIKLALRLM 199 >gi|254474829|ref|ZP_05088215.1| holliday junction ATP-dependent DNA helicase RuvA [Ruegeria sp. R11] gi|214029072|gb|EEB69907.1| holliday junction ATP-dependent DNA helicase RuvA [Ruegeria sp. R11] Length = 229 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 116/227 (51%), Gaps = 22/227 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G +E D+VLIDV+GV YI+YC RT++ L +G+ L+ + +R+D ++L Sbjct: 1 MIGKLTGRLEYRSSDHVLIDVRGVGYIVYCSERTMAALPGVGEAVALYTDMVVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++++W LL SVQGVGA+V++ +L + + +I L + + G+ K Sbjct: 61 YGFPSLVEKEWHRLLTSVQGVGAKVSLAILGALGPDGVSRAIALGDWAAVKAAKGVGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI------------------- 161 A RI+ +LK KA + ++ ++ + Sbjct: 121 AQRIVLDLKDKAPGVMAMGGTVADAMDGPGLDVVEPADPVEPAKKPRKAPPKKPSGAAAA 180 Query: 162 --NAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 A+SAL NLGYG A AV A+++++IR ALR ++ Sbjct: 181 SAGALSALGNLGYGPSDAAAAVAEAAATYPE-ANEAELIRAALRLLA 226 >gi|269126344|ref|YP_003299714.1| Holliday junction DNA helicase RuvA [Thermomonospora curvata DSM 43183] gi|268311302|gb|ACY97676.1| Holliday junction DNA helicase RuvA [Thermomonospora curvata DSM 43183] Length = 202 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 10/208 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + D+ ++DV GV + C TL+ L ++G+ T+ +R+D + L Sbjct: 1 MIAFVSGKVAAAGPDHAVVDVGGVGLTLQCTPATLAGL-RVGEQVTVPTSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF D +R F LLQ+ GVG R+A+ +L+ + L ++ + + ++PGI K Sbjct: 60 FGFADDDERAVFELLQTASGVGPRLALAMLAVHSPNALRRAVAAGDVAALTKVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK + + + L+NLG+ +A A Sbjct: 120 AQRIVLELKDRL-------GAPSGEEEAAAPAPARAEPWRTQVQTGLINLGWSAREAEAA 172 Query: 181 VVSVLK--KEKNIADDSQIIRLALRAIS 206 V +V + S +++ ALR +S Sbjct: 173 VEAVAAELDGGPLPPVSALLKSALRKLS 200 >gi|239917790|ref|YP_002957348.1| Holliday junction DNA helicase subunit RuvA [Micrococcus luteus NCTC 2665] gi|259495650|sp|C5CCI2|RUVA_MICLC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|239838997|gb|ACS30794.1| Holliday junction DNA helicase subunit RuvA [Micrococcus luteus NCTC 2665] Length = 214 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 48/206 (23%), Positives = 94/206 (45%), Gaps = 7/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + D +I V G+ +TLS L + G + +++D + L Sbjct: 1 MIASLSGTVEHVALDRAVIAVGGLGVQFSATPQTLSTLHE-GRPGAVQTHLVVKEDALTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F +L + GVG R+A+ +LS + ++ ++ K + ++PGI K+ Sbjct: 60 YGFADRDEREVFEVLITANGVGPRLALAILSVHHPETVRRAVTEEDEKTLTRVPGIGPKM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ EL G+ V + + + + + A+ LG+ + +A A Sbjct: 120 ARKIIVELSGRLAPTGEPVPGAEAEASD---EPAVETVWHADVVQAMAGLGWSEKEALKA 176 Query: 181 VV---SVLKKEKNIADDSQIIRLALR 203 V + + D + ++R LR Sbjct: 177 VEATVAARPELDEGRDVAALLRATLR 202 >gi|254464647|ref|ZP_05078058.1| Holliday junction DNA helicase RuvA [Rhodobacterales bacterium Y4I] gi|206685555|gb|EDZ46037.1| Holliday junction DNA helicase RuvA [Rhodobacterales bacterium Y4I] Length = 229 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 118/227 (51%), Gaps = 22/227 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ +D+VLIDV+GV YI+YC RT++ L G+ L+ + +R+D ++L Sbjct: 1 MIGKLTGRLDYRAQDHVLIDVRGVGYIVYCSDRTMAALPGTGEPVALYTDLVVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++++W LL SVQGVGA+V++ +L + + +I L + + G+ K Sbjct: 61 YGFPSLVEKEWHRLLTSVQGVGAKVSLAILGALGPDGVSRAIALGDWATVKAAKGVGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAH---------------------ICSMPSF 159 A RI+ +LK KA + ++ + ++ + Sbjct: 121 AQRIVLDLKDKAPGVMAMGGTVVDAMDGPGLELVEAADPAPAAKPARKALPKKPSGAAAA 180 Query: 160 AINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 + A+SAL NLGYG A AV + AD+ ++IR ALR ++ Sbjct: 181 SAGALSALGNLGYGPSDAAAAVAEAAATWPD-ADEPELIRAALRLLA 226 >gi|313623659|gb|EFR93815.1| holliday junction DNA helicase RuvA [Listeria innocua FSL J1-023] Length = 201 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG ++ + +Y++++ + Y I S G +F+ H+R+D I L Sbjct: 1 MYDYIKGIVKTITPEYIVVETGQIGYQI-ITGNPFSFQRLEGTEAQVFLYQHVREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L SV G+G + A+ +++ L+ +I ++ + + P + K Sbjct: 60 FGFQSTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLITAIESEDDVYLTKFPSVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK L+ VV ++ E + + A+ AL LGY + Sbjct: 120 ARQIILDLKGK---LADVVASEIVYKAAENDIVTGLSPQLEEAVLALEALGYSTRELKKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + K+ I+LAL+ + Sbjct: 177 IPKMAKEN--DLTSDAYIKLALQLM 199 >gi|6685961|sp|Q9ZNJ6|RUVA_CLOHI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|3892649|dbj|BAA34545.1| ruvA [Clostridium histolyticum] Length = 197 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 103/205 (50%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG G+ ++Y++I+ + Y I+ T++ + IG+ L++ +R+D I L Sbjct: 1 MYEYIKGTYMGINKEYIVIENGDIGYKIHSSGYTIANMPNIGEHIMLYLTQIVREDFIGL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S + + F L +V G+GA+ ++ +LS L +I+L++ K++ + PGI K Sbjct: 61 YGFGSKEELELFNKLLTVNGIGAKASLSLLSITNVENLKRAIVLEDEKLLIKAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + + I A AL++LGY + + A Sbjct: 121 AQRIILELKDKLD------VNLDEGIQTDSNDIKVSSKILEEAKEALMSLGYSEKECEKA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +V +KE II+ +L+ + Sbjct: 175 LKNVEEKE----SLEIIIKESLKFL 195 >gi|315923964|ref|ZP_07920192.1| crossover junction ATP-dependent DNA helicase RuvA [Pseudoramibacter alactolyticus ATCC 23263] gi|315622804|gb|EFV02757.1| crossover junction ATP-dependent DNA helicase RuvA [Pseudoramibacter alactolyticus ATCC 23263] Length = 231 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 54/192 (28%), Positives = 97/192 (50%), Gaps = 2/192 (1%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 IKG + D V+I+ G+ Y ++ + T++ L + + L + R+D + L+ Sbjct: 29 FEYIKGELSAQSADTVVIENNGIGYRVHVSLTTIAELPPLHEQLKLLLYPAFREDDVTLY 88 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF + +R F L S+ G+G + AMG+LS+ EL+ I+ ++K IA+ PGI K A Sbjct: 89 GFATAEERGLFGTLISISGIGPKAAMGLLSQFAEPELIRHIVNADAKAIARAPGIGKKTA 148 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 RI+ ELK + + V ++ + V A + + + ++ L+ LGY +A+ V Sbjct: 149 ERIILELKDRYKDV--VAEEGDAPVGGATAKLRAADNLTNEGVNGLLGLGYTYAEASDLV 206 Query: 182 VSVLKKEKNIAD 193 L + I + Sbjct: 207 ARALAPDMTIEE 218 >gi|331002346|ref|ZP_08325864.1| Holliday junction DNA helicase RuvA [Lachnospiraceae oral taxon 107 str. F0167] gi|330410162|gb|EGG89596.1| Holliday junction DNA helicase RuvA [Lachnospiraceae oral taxon 107 str. F0167] Length = 196 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 49/206 (23%), Positives = 96/206 (46%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + D ++++ G+ Y ++ R + + K D ++ + D L Sbjct: 1 MIAYIKGIVTEKNTDSIIVECSGLGYEVFTCGRDIQSVSKT-DEILIYTYLRISDDAHTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ D F L + GVG + A+ ++S + + +L +I+ + K I+ GI KI Sbjct: 60 YGFLNKDDLLMFKKLLGISGVGPKAALSIMSTLGSFDLKMAIVSDDYKAISAAQGIGQKI 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K D+ + + + AL++LGY +A Sbjct: 120 AKRIILDLKEKV---------DLGSILVSDIDNTADSTVQTETAQALISLGYSSSEAYKV 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + S+ K+ + ++++AL+ ++ Sbjct: 171 LKSMDIKDSDK--VEDVLKIALKKMA 194 >gi|325283106|ref|YP_004255647.1| Holliday junction ATP-dependent DNA helicase ruvA [Deinococcus proteolyticus MRP] gi|324314915|gb|ADY26030.1| Holliday junction ATP-dependent DNA helicase ruvA [Deinococcus proteolyticus MRP] Length = 196 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 93/205 (45%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + ++ G+ Y ++CP TL+ L K G+ L +R+D L Sbjct: 1 MIVYLSGTVREVRTSSAVLQTGGLGYEVFCPQSTLARL-KPGEAAELHTRFVVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF Q F L+ V GVG ++ + +LS + + L + I+ ++K+++ + G+ K Sbjct: 60 FGFHDTDSAQLFDLVTGVSGVGPKLGLALLSAMPVSTLAQGILDGDAKLLSSVSGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E++ K + + V A +AI AL+ LG+ + Q T Sbjct: 120 AERLILEVQSKVPAHLAAPSGGSKPVTVTTAGA--------DAIDALMALGFREAQVRTV 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +L +IR L + Sbjct: 172 VAGLLADNPE-QSADTLIRKGLGQL 195 >gi|261878755|ref|ZP_06005182.1| crossover junction endoribonuclease subunit A [Prevotella bergensis DSM 17361] gi|270334761|gb|EFA45547.1| crossover junction endoribonuclease subunit A [Prevotella bergensis DSM 17361] Length = 206 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 54/209 (25%), Positives = 101/209 (48%), Gaps = 8/209 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMR----QD 56 MI I+G + L +++ G+ Y + + T + + L+V ++ D Sbjct: 1 MIEYIQGELTELTPALAVVETGGIGYALSISLNTYDDI-QGKKAVKLYVHEAIQTGGRDD 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L+GF S +R+ + +L +V GVGA A +LS +T EL +I N K+I + GI Sbjct: 60 NYTLYGFASKQERELYRMLITVSGVGANTARTMLSSLTPKELCNAIANGNEKLIKSVKGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 +K A R++ +L+ K +SS + + + + + A+SAL LG+ Sbjct: 120 GLKTAQRVIVDLRDKI--VSSGIAEVLHAGTPDTKVSAVNTAVKDEAVSALTMLGFSPAP 177 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 AT V ++L ++ ++ +++ AL+ I Sbjct: 178 ATKTVTAILTEQPDMV-VEMVVKEALKRI 205 >gi|270307810|ref|YP_003329868.1| Holliday junction DNA helicase [Dehalococcoides sp. VS] gi|270153702|gb|ACZ61540.1| Holliday junction DNA helicase [Dehalococcoides sp. VS] Length = 194 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 58/204 (28%), Positives = 102/204 (50%), Gaps = 14/204 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E +D+ +I+V GV + Y P + + +G++G +F H+R+D + L Sbjct: 1 MISSLSGILEASGKDWAVINVSGVGFRTYMPASSPALIGELGQRVRVFTHLHVREDALNL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F L V G+G ++ + +LS + A L +II N+++++ IPGI K Sbjct: 61 FGFGTAEELSLFETLIDVSGIGPKLGLAMLSAMNAEALASAIISGNTELLSTIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ ELK K + E + + + ++ L LGY +A A Sbjct: 121 ASRIVLELKDKIAK------------SWEAGVLSQVTEANSDILATLTALGYSAGEAAKA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + S+ ++ + I+LAL Sbjct: 169 IASL--EDITGLPLEERIKLALNY 190 >gi|319400968|gb|EFV89187.1| holliday junction DNA helicase RuvA [Staphylococcus epidermidis FRI909] Length = 200 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 99/205 (48%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + L+ +V+++ G+ Y I P + + ++ +R+D L Sbjct: 1 MYAYIKGTLSQLFPTHVVVETCGIGYEIQTP-NSYRFQKYLEKEVQIYTSLIVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+++ +++ F+ L V G+G + A+ +L+ T E+ +I +N + Q PGI K Sbjct: 60 YGFINEEEKEMFLSLIKVTGIGPKSALAILASSTPHEVKLAIENENDAYLTQFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + +++ + + Q + A+ AL LGY + + + Sbjct: 120 ARQIVLDLKGKVT----ITEENSDDLLQTQVNGNEQNQIISEALLALQALGYSKRELSKV 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 S+ K N + +++ L+ + Sbjct: 176 EKSLNKHNVN--SVDEAVKIGLQTL 198 >gi|289706228|ref|ZP_06502591.1| Holliday junction DNA helicase RuvA [Micrococcus luteus SK58] gi|289557067|gb|EFD50395.1| Holliday junction DNA helicase RuvA [Micrococcus luteus SK58] Length = 214 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 48/206 (23%), Positives = 96/206 (46%), Gaps = 7/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + D +I V G+ +TL+ L + G + +++D + L Sbjct: 1 MIASLSGTVEHVALDRAVIAVGGLGVQFSATPQTLATLHE-GRPGAVQTHLVVKEDALTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F +L + GVG R+A+ +LS + ++ ++ K + ++PGI K+ Sbjct: 60 YGFADRDEREVFEVLITANGVGPRLALAILSVHHPEAVRRAVTEEDEKTLTRVPGIGPKM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ EL G+ V + + V+ + + + A+ LG+ + +A A Sbjct: 120 ARKIIVELSGRLAPTGEPVPEAEAEVSD---EPAVETVWHADVVQAMAGLGWSEKEALKA 176 Query: 181 VV---SVLKKEKNIADDSQIIRLALR 203 V + + D + ++R LR Sbjct: 177 VEATVAARPELDEGRDVAALLRATLR 202 >gi|288923988|ref|ZP_06418058.1| DNA recombination protein RuvA domain I [Frankia sp. EUN1f] gi|288344666|gb|EFC79125.1| DNA recombination protein RuvA domain I [Frankia sp. EUN1f] Length = 217 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 57/215 (26%), Positives = 96/215 (44%), Gaps = 11/215 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G +E L ++DV GV +++C TL+ L ++G+ L +R+ ++ L Sbjct: 1 MIASISGTVEALSPTSAVVDVGGVGILVWCTPATLARL-RVGERAKLSTTLVVRETELTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F +LQ GVG R+A VL + + ++ ++ + ++PGI K Sbjct: 60 YGFADADERDVFEILQGAAGVGPRLAQAVLGVHSPDAVRRAVAAEDLAALTKVPGIGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +L+ K S+ V V A ALV LGY +A A Sbjct: 120 AQRIVLDLRDKIGPPSAPVPAPRGAVAAAAVAELRPGGPAEQVRDALVGLGYSAREAQDA 179 Query: 181 VVSVLK----------KEKNIADDSQIIRLALRAI 205 VV+ + D + ++R +L + Sbjct: 180 VVAAGVAAGADAGVTGDAGDAVDPAALLRASLAIL 214 >gi|281413717|ref|ZP_06245459.1| Holliday junction DNA helicase RuvA [Micrococcus luteus NCTC 2665] Length = 216 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 48/206 (23%), Positives = 93/206 (45%), Gaps = 7/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + D +I V G+ +TLS L + G + +++D + L Sbjct: 3 MIASLSGTVEHVALDRAVIAVGGLGVQFSATPQTLSTLHE-GRPGAVQTHLVVKEDALTL 61 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF +R+ F +L + GVG R+A+ +LS + ++ ++ K + ++PGI K+ Sbjct: 62 SGFADRDEREVFEVLITANGVGPRLALAILSVHHPETVRRAVTEEDEKTLTRVPGIGPKM 121 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ EL G+ V + + + + + A+ LG+ + +A A Sbjct: 122 ARKIIVELSGRLAPTGEPVPGAEAEASD---EPAVETVWHADVVQAMAGLGWSEKEALKA 178 Query: 181 VV---SVLKKEKNIADDSQIIRLALR 203 V + + D + ++R LR Sbjct: 179 VEATVAARPELDEGRDVAALLRATLR 204 >gi|255534553|ref|YP_003094924.1| Holliday junction DNA helicase RuvA [Flavobacteriaceae bacterium 3519-10] gi|255340749|gb|ACU06862.1| Holliday junction DNA helicase RuvA [Flavobacteriaceae bacterium 3519-10] Length = 255 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 99/205 (48%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KGN++ L V+IDV GV Y + ++T L +G L ++ +R+D L Sbjct: 62 MIYSLKGNVQELNPTSVIIDVNGVGYYVGVSLQTSEKLV-LGKETFLNIQQIIREDAHLL 120 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++ F LL SV GVG A+ +LS ++ E+ +I+ NS ++ ++ GI K Sbjct: 121 FGFNTISEKELFNLLISVNGVGPVSALIMLSSLSLQEIASAILSGNSLLLQKVKGIGTKT 180 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +L+ K + + VN A+SAL LG + + Sbjct: 181 AERIIVDLRDKVQKFNISEGNISNFVN---------NKVKDEALSALEVLGIPKKMSEKI 231 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 LK ++ +++ L+ I Sbjct: 232 ADRFLKTNADL-SVEDLVKQILKNI 255 >gi|222153876|ref|YP_002563053.1| Holliday junction DNA helicase RuvA [Streptococcus uberis 0140J] gi|254767391|sp|B9DW68|RUVA_STRU0 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|222114689|emb|CAR43773.1| Holliday junction DNA helicase RuvA [Streptococcus uberis 0140J] Length = 197 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 94/205 (45%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ YIIY S + T+++ +R+D L Sbjct: 1 MFDYIKGQLTKITAKYIVVEANGLGYIIYV-ANPYSFSDSVNQTLTIYLHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTENEKDVFLKLISVSGIGPMTALAIVAVDDNEGLVAAIDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK +++ Q +Q AI AL+ LGY + Sbjct: 120 AQQMILDLSGKFVTIPEGGQA-------QQMPKAKGNQQLDEAIEALLALGYKATELKK- 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + + A Q I+ AL+ + Sbjct: 172 IRAFFEGTDDTA--EQYIKSALKML 194 >gi|116627021|ref|YP_819640.1| Holliday junction DNA helicase RuvA [Streptococcus thermophilus LMD-9] gi|122268374|sp|Q03MX8|RUVA_STRTD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|116100298|gb|ABJ65444.1| Holliday junction resolvasome, DNA-binding subunit [Streptococcus thermophilus LMD-9] gi|312277481|gb|ADQ62138.1| Holliday junction ATP-dependent DNA helicase ruvA [Streptococcus thermophilus ND03] Length = 196 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 90/205 (43%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + +++I+ G+ YI+ S ++ +++ +R D L Sbjct: 1 MYDYIKGTLVKITAKHIVIETNGLGYIVTV-ANPYSFSDQMNQTIQVYLHQVIRDDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTEDEKEVFLKLISVSGIGPTTALAIVAVDDNQGLVAAIDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK L + A+ + A+ AL+ LGY + Sbjct: 120 AQQMVLDLAGKFAEL-------PAETTNTTANQTAGNQQLDEAMEALLALGYKATELKKV 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 ++ N Q I+ AL+ + Sbjct: 173 --KAFFEDTN-ETAEQYIKSALKML 194 >gi|55820159|ref|YP_138601.1| Holliday junction DNA helicase RuvA [Streptococcus thermophilus LMG 18311] gi|55822047|ref|YP_140488.1| Holliday junction DNA helicase RuvA [Streptococcus thermophilus CNRZ1066] gi|81559960|sp|Q5M1Y4|RUVA_STRT1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|81561136|sp|Q5M6H5|RUVA_STRT2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|55736144|gb|AAV59786.1| Holliday junction DNA helicase, subunit A [Streptococcus thermophilus LMG 18311] gi|55738032|gb|AAV61673.1| Holliday junction DNA helicase, subunit A [Streptococcus thermophilus CNRZ1066] Length = 196 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 90/205 (43%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + +++I+ G+ YI+ S ++ +++ +R D L Sbjct: 1 MYDYIKGTLVKITAKHIVIETNGLGYIVTV-ANPYSFSDQMNQTIQVYLHQVIRDDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTEDEKEVFLKLISVSGIGPTTALAIVAVDDNQGLVAAIDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK L + A+ + A+ AL+ LGY + Sbjct: 120 AQQMVLDLAGKFAEL-------PAETTNTTANQTAGNQQLDEAMEALLALGYKSTELKKV 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 ++ N Q I+ AL+ + Sbjct: 173 --KAFFEDTN-ETAEQYIKSALKML 194 >gi|329116352|ref|ZP_08245069.1| Holliday junction DNA helicase RuvA [Streptococcus parauberis NCFD 2020] gi|326906757|gb|EGE53671.1| Holliday junction DNA helicase RuvA [Streptococcus parauberis NCFD 2020] Length = 197 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ YIIY S + T+++ +R+D L Sbjct: 1 MFDYIKGQLTKITAKYIVVEANGLGYIIYV-ANPYSFSDSVNQQVTIYLHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTEEEKDVFLKLISVSGIGPMTALAIVAVDDNEGLVMAIDNSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK + AI AL+ LGY + Sbjct: 120 AQQMILDLAGKFVEAPKDSAPTSKA-------NAGGNLQLDEAIEALLALGYKATELKK- 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + E Q I+ AL+ + Sbjct: 172 IRAFF--EGTDETAEQYIKSALKML 194 >gi|326329831|ref|ZP_08196151.1| holliday junction DNA helicase RuvA [Nocardioidaceae bacterium Broad-1] gi|325952417|gb|EGD44437.1| holliday junction DNA helicase RuvA [Nocardioidaceae bacterium Broad-1] Length = 200 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 49/195 (25%), Positives = 91/195 (46%), Gaps = 8/195 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +++V G+ + C TL+ L + G+ L +R+D + L Sbjct: 1 MIASVRGKVAAVSLSTAVVEVGGIGIELLCTPNTLATL-RTGEEAHLPTSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F LLQ+ GVG ++A +L+ ++ + +I +++K + ++PGI K Sbjct: 60 FGFTDTDERTLFELLQTASGVGPKLAQAMLAVLSPDGIRLAISTEDAKTLTKVPGIGQKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + A + AL+ LGY A A Sbjct: 120 AQRVILELKDRI-------GAPTGSASAPAAVQQGAAPWRDQVTEALIGLGYNARDADKA 172 Query: 181 VVSVLKKEKNIADDS 195 V ++ + + A+ S Sbjct: 173 VTAIEPEAGDHANIS 187 >gi|163738342|ref|ZP_02145757.1| Holliday junction DNA helicase motor protein [Phaeobacter gallaeciensis BS107] gi|161388263|gb|EDQ12617.1| Holliday junction DNA helicase motor protein [Phaeobacter gallaeciensis BS107] Length = 229 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 117/227 (51%), Gaps = 22/227 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G +E D+VLIDV+GV YI+YC RT++ L G+ L+ + +R+D ++L Sbjct: 1 MIGKLTGRLEYRSSDHVLIDVRGVGYIVYCSDRTMATLPGTGEAVALYTDMVVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++++W LL SVQGVGA+V++ +L + + +I L + + G+ K Sbjct: 61 YGFPSLMEKEWHRLLTSVQGVGAKVSLAILGTLGPEGVSRAIALGDWATVKAAKGVGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN------------------ 162 A RI+ +LK KA + ++ ++ + + Sbjct: 121 AQRIVLDLKDKAPGVMAMGGTIADAMDGPGLDVVESVAPVEAGKTPRKAPPKAPSGAAAA 180 Query: 163 ---AISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 A+SAL NLGYG A AV + A+++++IR ALR ++ Sbjct: 181 SAGALSALGNLGYGPSDAAAAVAEAAATYPD-ANEAELIRAALRLLA 226 >gi|310658621|ref|YP_003936342.1| FuvABC resolvasome regulatory subunit [Clostridium sticklandii DSM 519] gi|308825399|emb|CBH21437.1| component of RuvABC resolvasome, regulatory subunit [Clostridium sticklandii] Length = 199 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 98/205 (47%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ IKG +E D ++++ G+ Y I + T+ + IG+ + + +R+D I+L Sbjct: 1 MLNYIKGILEEKAVDKIVVENNGIGYEILTSLNTIEEI-NIGEKIKIHTKLLVREDDIQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF S + F LL SV +G ++A+ LS + ++ I+ + + +IPG+ K Sbjct: 60 VGFTSKEELSIFNLLTSVSKIGPKLALSSLSVYKSEKIKLMIVESDINSLVKIPGMGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + +++ + AI ALV+LG+ + ++ Sbjct: 120 AERVILELKDKIGVVY---------FTDLESNSEPQLNIGHQAIEALVSLGFSKKESEDV 170 Query: 181 VVSVLKKEKNIAD---DSQIIRLAL 202 V ++K N + +I+ AL Sbjct: 171 VKKIIKSVGNDTESLHVETLIKNAL 195 >gi|242242914|ref|ZP_04797359.1| crossover junction endodeoxyribonuclease [Staphylococcus epidermidis W23144] gi|242233629|gb|EES35941.1| crossover junction endodeoxyribonuclease [Staphylococcus epidermidis W23144] Length = 200 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 99/205 (48%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + L+ +V+++ G+ Y I P + + ++ +R+D L Sbjct: 1 MYAYIKGTLSQLFPTHVVVETCGIGYEIQTP-NSYRFQKYLEKEVQIYTSLIVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+++ +++ F+ L V G+G + A+ +L+ T E+ +I +N + Q PGI K Sbjct: 60 YGFINEEEKEMFLSLIKVTGIGPKSALAILASSTPYEVKLAIENENDAYLTQFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + +++ + + Q + A+ AL LGY + + + Sbjct: 120 ARQIVLDLKGKVT----ITEENSDDLLQTQVNGNEQNQIISEALLALQALGYSKRELSKV 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 S+ K N + +++ L+ + Sbjct: 176 EKSLNKHNVN--SVDEAVKIGLQTL 198 >gi|307720862|ref|YP_003892002.1| Holliday junction DNA helicase subunit RuvA [Sulfurimonas autotrophica DSM 16294] gi|306978955|gb|ADN08990.1| Holliday junction DNA helicase subunit RuvA [Sulfurimonas autotrophica DSM 16294] Length = 189 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 94/205 (45%), Gaps = 19/205 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E YV ++VQG+ Y ++ + T S L K + +LF +R+D L Sbjct: 1 MIVGLHGKVEYKEPAYVHVNVQGIVYEVFISLHTFSALPK--EDVSLFTTQIIREDAQLL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+ +++ F L + GVG +VAM + S T ++ I ++ + ++PGI K Sbjct: 59 FGFMDMSEKKMFSRLIKINGVGPKVAMAICSTYTPSQFATVINNKDVNGVKKVPGIGPKS 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL G + + A AL LG+ +D+ + A Sbjct: 119 AGRILVELNGFDAEILG------------DSATPQASQAFNEASEALEALGFKKDKISKA 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + D + +++ AL+ + Sbjct: 167 LSA-----CEGDDTASLVKGALKQL 186 >gi|225871416|ref|YP_002747363.1| Holliday junction DNA helicase RuvA [Streptococcus equi subsp. equi 4047] gi|254767388|sp|C0MAS2|RUVA_STRE4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|225700820|emb|CAW95524.1| Holliday junction DNA helicase RuvA [Streptococcus equi subsp. equi 4047] Length = 198 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 88/205 (42%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ Y+I S + T+++ +R+D L Sbjct: 1 MYDYIKGQLTKITAKYIVVEANGLGYMITV-ANPYSFTDCVNQQVTIYLHQVIREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S+ ++ F+ L SV G+G A+ +++ LV +I + + + P I K Sbjct: 60 FGFHSEEEKDVFLKLISVSGIGPTTALAIVAVDDNRGLVNAIDNSDITYLMRFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK V+ +K A+ AL+ LGY + Sbjct: 120 AQQMVLDLAGKF------VEAPKEESSKPPKAKQQGNEQLDEAVEALLALGYKATELKK- 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + E Q I+ AL+ + Sbjct: 173 IRAFF--EGTSETAEQYIKSALKML 195 >gi|57234748|ref|YP_181186.1| Holliday junction DNA helicase RuvA [Dehalococcoides ethenogenes 195] gi|90134862|sp|Q3Z9B3|RUVA_DEHE1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|57225196|gb|AAW40253.1| Holliday junction DNA helicase RuvA [Dehalococcoides ethenogenes 195] Length = 194 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 102/204 (50%), Gaps = 14/204 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E +D+ +I+V GV + Y P + + +G++G +F H+R+D + L Sbjct: 1 MISSLSGILEASGKDWAVINVSGVGFRTYMPASSPALIGELGQRVRVFTHLHVREDALNL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F L V G+G ++ + +LS + A L +II N+++++ IPG+ K Sbjct: 61 FGFGTAEELSLFETLIDVSGIGPKLGLAMLSAMNAEALASAIISGNTELLSTIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ ELK K + E + + + ++ L LGY +A A Sbjct: 121 ASRIVLELKDKITK------------SWEAGVLIQVTEANSDILATLTALGYSAGEAAKA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + S+ ++ + I+LAL Sbjct: 169 IASL--EDITGMPLEERIKLALNY 190 >gi|120602036|ref|YP_966436.1| Holliday junction DNA helicase RuvA [Desulfovibrio vulgaris DP4] gi|166230546|sp|A1VC43|RUVA_DESVV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|120562265|gb|ABM28009.1| Holliday junction DNA helicase subunit RuvA [Desulfovibrio vulgaris DP4] Length = 202 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 49/192 (25%), Positives = 93/192 (48%), Gaps = 8/192 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI ++G + + + ++ GV Y ++ P TL+ L G + F+ T +R+D + Sbjct: 1 MIAYVEGRLAEVAGNACVVVTDGGVGYEVFVPGHTLARLPDKGGRVSFFISTEVREDALE 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + +RQ F++L S+ VGA+ + +LS+ +L ++ + + ++ GI K Sbjct: 61 LYGFATWDERQTFIVLTSISKVGAKTGLAILSQFRPDDLRRLVVEDDVLALTRVSGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A I ELK K + + +A++ L NLGYG+++A+ Sbjct: 121 TAQHIFLELKYKLKVEDLPAAAPL-------VTGGAPGGVFRDALAGLANLGYGEEEASH 173 Query: 180 AVVSVLKKEKNI 191 + VL E ++ Sbjct: 174 VLKEVLHGEPDL 185 >gi|27468243|ref|NP_764880.1| holliday junction DNA helicase [Staphylococcus epidermidis ATCC 12228] gi|57867153|ref|YP_188781.1| Holliday junction DNA helicase RuvA [Staphylococcus epidermidis RP62A] gi|251811047|ref|ZP_04825520.1| crossover junction endodeoxyribonuclease [Staphylococcus epidermidis BCM-HMP0060] gi|282875933|ref|ZP_06284800.1| Holliday junction DNA helicase RuvA [Staphylococcus epidermidis SK135] gi|293366401|ref|ZP_06613080.1| crossover junction endoribonuclease subunit A [Staphylococcus epidermidis M23864:W2(grey)] gi|33301648|sp|Q8CS90|RUVA_STAES RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|71153736|sp|Q5HNQ9|RUVA_STAEQ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|27315789|gb|AAO04924.1|AE016748_158 holliday junction DNA helicase [Staphylococcus epidermidis ATCC 12228] gi|57637811|gb|AAW54599.1| Holliday junction DNA helicase RuvA [Staphylococcus epidermidis RP62A] gi|251805423|gb|EES58080.1| crossover junction endodeoxyribonuclease [Staphylococcus epidermidis BCM-HMP0060] gi|281294958|gb|EFA87485.1| Holliday junction DNA helicase RuvA [Staphylococcus epidermidis SK135] gi|291319526|gb|EFE59893.1| crossover junction endoribonuclease subunit A [Staphylococcus epidermidis M23864:W2(grey)] gi|329724713|gb|EGG61219.1| Holliday junction DNA helicase RuvA [Staphylococcus epidermidis VCU144] gi|329733747|gb|EGG70073.1| Holliday junction DNA helicase RuvA [Staphylococcus epidermidis VCU045] gi|329737232|gb|EGG73486.1| Holliday junction DNA helicase RuvA [Staphylococcus epidermidis VCU028] Length = 200 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 99/205 (48%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + L+ +V+++ G+ Y I P + + ++ +R+D L Sbjct: 1 MYAYIKGTLSQLFPTHVVVETCGIGYEIQTP-NSYRFQKYLEKEVQIYTSLIVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+++ +++ F+ L V G+G + A+ +L+ T E+ +I +N + Q PGI K Sbjct: 60 YGFINEEEKEMFLSLIKVTGIGPKSALAILASSTPHEVKLAIENENDAYLTQFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + +++ + + Q + A+ AL LGY + + T Sbjct: 120 ARQIVLDLKGKVT----ITEENSDDLLQTQVNGNEQNQIISEALLALQALGYSKRELTKV 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 S+ K N + +++ L+ + Sbjct: 176 EKSLNKHNVN--SVDEAVKIGLQTL 198 >gi|291301298|ref|YP_003512576.1| Holliday junction DNA helicase RuvA [Stackebrandtia nassauensis DSM 44728] gi|290570518|gb|ADD43483.1| Holliday junction DNA helicase RuvA [Stackebrandtia nassauensis DSM 44728] Length = 200 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 50/206 (24%), Positives = 92/206 (44%), Gaps = 10/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + I V GV + TL+ L ++G TL+ +R+D + L Sbjct: 1 MIASLTGTVTHVSTSTATITVGGVGMSVRATPGTLANL-RVGGESTLYTTLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F LLQ+ GVG R+A L+ + +I ++ + +IPG+ K Sbjct: 60 YGFEAPDERDLFELLQTASGVGPRLAQAALAVHPPATVRHAIASGDTATLTRIPGVGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K +L + + S+ L++LG+ A A Sbjct: 120 AERLVLELKDKIGALPGSMATEPKAGRPV--------SWRDQVQQGLMSLGWSAKDANGA 171 Query: 181 VVSVLKK-EKNIADDSQIIRLALRAI 205 + + + + D +++ A+R + Sbjct: 172 ITKLDSQVDGEAVDIQGLLKQAIRLL 197 >gi|215427996|ref|ZP_03425915.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis T92] gi|289751217|ref|ZP_06510595.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis T92] gi|289691804|gb|EFD59233.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis T92] Length = 196 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 91/205 (44%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+V+I+ GV Y + TL+ L + G L +R+D + L Sbjct: 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATL-RQGTEARLITAMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F+ L V GVG R+AM L+ A L + + N + ++PGI + Sbjct: 60 YGFPDGETRDLFLTLLLVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K A + + + ALV LG+ QA A Sbjct: 120 AERMVLELRDKV-----------GVAATGGALSTNGHAVRSPVVEALVGLGFAAKQAEEA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 +VL + A S +R AL + Sbjct: 169 TDTVLAANHD-ATTSSALRSALSLL 192 >gi|89895213|ref|YP_518700.1| hypothetical protein DSY2467 [Desulfitobacterium hafniense Y51] gi|122997255|sp|Q24UN6|RUVA_DESHY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|89334661|dbj|BAE84256.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 201 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 106/206 (51%), Gaps = 8/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + + D +++DVQGV Y + P L G L+ +R+D++ L Sbjct: 1 MIGMLRGKVWEIQADKLILDVQGVGYQLSIPYGLLGK-AHPGHELILYTHVILREDELAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +++ F+L+ SV G+G + A+ +LS + + +I +N ++ ++PGI K Sbjct: 60 YGFSSAAEKELFLLMLSVSGIGPKAALSILSTLGIGQTESAIASENITLLTKVPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + ++ E A +F A+ L+ LG+ Q++A A Sbjct: 120 AQRLILELKEKFK------GRAIALEGIEGAGSLPQAAFHSEAMETLLALGFSQEEAKKA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + L + +RLALR+++ Sbjct: 174 L-QALPDSAQALSTEEQVRLALRSLA 198 >gi|299144015|ref|ZP_07037095.1| holliday junction DNA helicase RuvA [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518500|gb|EFI42239.1| holliday junction DNA helicase RuvA [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 198 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 109/205 (53%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I L ++Y++I+ YI+Y + L +I ++ +R+D + L Sbjct: 1 MIDYIKGIISELLDNYIVIENNFKGYIVYMSQSDIEQL-EIMQEVKIYTRLIIREDNMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ R+ F LL SV VG + +MG+LS ++A++++ +I+ +NSK + PGI K Sbjct: 60 YGFVNKDSRKLFDLLTSVTSVGPKASMGILSTLSASQIIVAILDENSKALTSSPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + + D+ + + A+ AL++LGY + +A A Sbjct: 120 ADRIVLELKDKVSKYNFETRFDVKELKNSLKEEIDISP----AVEALISLGYNKYEAKKA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + D S++I+ AL+ + Sbjct: 176 LTGI----DENFDVSKMIKEALKRL 196 >gi|125625244|ref|YP_001033727.1| Holliday junction DNA helicase motor protein [Lactococcus lactis subsp. cremoris MG1363] gi|166230561|sp|A2RP07|RUVA_LACLM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|124494052|emb|CAL99052.1| holliday junction DNA helicase ruvA [Lactococcus lactis subsp. cremoris MG1363] gi|300072054|gb|ADJ61454.1| Holliday junction DNA helicase RuvA [Lactococcus lactis subsp. cremoris NZ9000] Length = 197 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 41/205 (20%), Positives = 90/205 (43%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G + + ++ID+ G+ Y+I + + ++V +R+D L Sbjct: 1 MFEYLNGKLVKISPTNIVIDLSGIGYLISV-ANPYAWSALMNTEVKIYVHQVIREDAHSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+++ ++ F+ L SV G+G + A+ +++ L+ +I + K + + PG+ K Sbjct: 60 YGFVNESEKALFLRLISVSGIGPKSALAIIAAADNEGLINAIDNSDIKYLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK + +V + + AI AL LGY + Sbjct: 120 AMQMVLDLAGKFDATGAVGISLLDA-------APASNLALEEAIEALQALGYKATELKKI 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ + I+ AL+ + Sbjct: 173 EKKLAQEAG--LTSEEYIKSALKLM 195 >gi|325290232|ref|YP_004266413.1| Holliday junction ATP-dependent DNA helicase ruvA [Syntrophobotulus glycolicus DSM 8271] gi|324965633|gb|ADY56412.1| Holliday junction ATP-dependent DNA helicase ruvA [Syntrophobotulus glycolicus DSM 8271] Length = 200 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 8/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +D +++DV GV Y++ P LS + +IG L +R+D + L Sbjct: 1 MIALLRGTVWEMDKDKLIVDVNGVGYLLNVPSGKLSSV-RIGQEVVLHTYLLVREDDLSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF D++ F+ L SV G+G + A+ +LS ++ +++ +++ +N + +I GI KI Sbjct: 60 FGFADRQDKELFIKLLSVSGIGPKAALSILSSFSSVQIITALVQENHVMFTEISGIGSKI 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ELK K + A S P + AL+ LG+ + TA Sbjct: 120 ARRLTLELKEKFKDYHLE-----GLTGETFAGSESGPGSEPGIMEALLALGFTPGETRTA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V +V K E + +R ALR ++ Sbjct: 175 VNAVGKLEG--LTFEEQLREALRLLA 198 >gi|162448567|ref|YP_001610934.1| holliday junction DNA helicase [Sorangium cellulosum 'So ce 56'] gi|161159149|emb|CAN90454.1| holliday junction DNA helicase [Sorangium cellulosum 'So ce 56'] Length = 244 Score = 138 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 63/213 (29%), Positives = 107/213 (50%), Gaps = 15/213 (7%) Query: 2 IGKIKGNIEGLY-EDYVLIDVQGVCYIIYCPI------RTLSCLGKIG-DFCTLFVETHM 53 IG++ G++ E V++DV GV Y + P+ R ++ K G D TLFV TH+ Sbjct: 38 IGRLSGHVVEEGDEGTVVLDVSGVGYEVTVPLGAVGRARGIAANAKAGSDAITLFVHTHV 97 Query: 54 RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113 R+D + L+GF + DR F +L + +G ++AM +LS + A EL I + + + I Sbjct: 98 REDALLLYGFATREDRAAFRVLIGISSIGPKIAMAILSALGAGELAAVITRRETARLTAI 157 Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 PG+ K A R++ ELK K + L + ++ + + + SAL +GY Sbjct: 158 PGVGKKTAERLVLELKDKLVHL------PAAPLSPAASPPVATGAKQDLLHSALTRMGYR 211 Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 +A AV ++ + + A ++R AL +S Sbjct: 212 PAEAERAVTALGARV-DSAPLGDLVRDALALLS 243 >gi|46580661|ref|YP_011469.1| Holliday junction DNA helicase RuvA [Desulfovibrio vulgaris str. Hildenborough] gi|81566321|sp|Q729U3|RUVA_DESVH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|46450080|gb|AAS96729.1| Holliday junction DNA helicase RuvA [Desulfovibrio vulgaris str. Hildenborough] gi|311234390|gb|ADP87244.1| Holliday junction DNA helicase RuvA [Desulfovibrio vulgaris RCH1] Length = 202 Score = 138 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 49/192 (25%), Positives = 93/192 (48%), Gaps = 8/192 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI ++G + + + ++ GV Y ++ P TL+ L G + F+ T +R+D + Sbjct: 1 MIAYVEGRLAEVAGNACVVVTDGGVGYEVFVPGHTLARLPDKGGRVSFFISTEVREDALE 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + +RQ F++L S+ VGA+ + +LS+ +L ++ + + ++ GI K Sbjct: 61 LYGFATWDERQTFIVLTSISKVGAKTGLAILSQFRPDDLRRLVVEDDVLALTRVSGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A I ELK K + + +A++ L NLGYG+++A+ Sbjct: 121 TAQHIFLELKYKLKVEDLPAAAPL-------VTGGAPGGVFRDALAGLANLGYGEEEASH 173 Query: 180 AVVSVLKKEKNI 191 + VL E ++ Sbjct: 174 VLKDVLHGEPDL 185 >gi|298529992|ref|ZP_07017394.1| Holliday junction DNA helicase RuvA [Desulfonatronospira thiodismutans ASO3-1] gi|298509366|gb|EFI33270.1| Holliday junction DNA helicase RuvA [Desulfonatronospira thiodismutans ASO3-1] Length = 203 Score = 138 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 93/205 (45%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I+G + + L+ G+ Y ++ L + G+ L +R+D + Sbjct: 1 MIALIRGTLVSFNDKSCLVMTASGLGYEVHVSAMGLQNMPGQGEELELHTSMVVREDALD 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + +R+ F +L + +G + A+ +L + +++ + I ++ + Q+PGI K Sbjct: 61 LYGFFTRDERETFNVLLNAPKLGPKTALAILGIFSPSQIQKIINTEDEAALTQVPGIGSK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ +LK + +S + + ++ L +LGY + T Sbjct: 121 TARRLILDLKDRLGFISPQHEDPRPAPGPRG--------VRQDVLAGLTSLGYSAAEVTP 172 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + VL+KE ++ D S IR L+ Sbjct: 173 LLDEVLEKEPDL-DVSSAIRAVLKE 196 >gi|117928551|ref|YP_873102.1| Holliday junction DNA helicase subunit RuvA [Acidothermus cellulolyticus 11B] gi|166229623|sp|A0LUK6|RUVA_ACIC1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|117649014|gb|ABK53116.1| Holliday junction DNA helicase subunit RuvA [Acidothermus cellulolyticus 11B] Length = 196 Score = 138 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 100/207 (48%), Gaps = 16/207 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + D V+++V G + T++ ++G+ +R+D + L Sbjct: 1 MISFVSGRVAAVTPDSVIVEVGGFGVQLLATPATIAR-ARVGERARFATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +R F LLQ+ GVG R+A+ +L + T L ++ ++ K +A +PGI K Sbjct: 60 YGFADDDERTVFELLQTASGVGPRLALAMLGVHSPTALRAAVATEDVKALALVPGIGRKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK + + S+ + S + + L+NLGY QA A Sbjct: 120 AQRIILELKDRLGTPSTAAAESTSG-------------WRDAVHAGLLNLGYTARQADEA 166 Query: 181 VVSVLKKEKNIA--DDSQIIRLALRAI 205 + ++ + + A D + +RLAL + Sbjct: 167 IAAIAGELDDSAAVDTATALRLALATL 193 >gi|145594353|ref|YP_001158650.1| Holliday junction DNA helicase RuvA [Salinispora tropica CNB-440] gi|189045768|sp|A4X5X2|RUVA_SALTO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|145303690|gb|ABP54272.1| Holliday junction DNA helicase subunit RuvA [Salinispora tropica CNB-440] Length = 200 Score = 138 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 98/206 (47%), Gaps = 11/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + D+ +++V GV + C T++ L ++G L +R+D + L Sbjct: 1 MIASVRGVVTATGPDHAVLEVGGVGLAVQCAPGTIADL-RVGQPARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D + F LLQ+ GVG R+A VL+ + +I ++ + ++PGI K Sbjct: 60 YGFADDDAKALFELLQTASGVGPRLAQAVLAVHPPEAVRAAIANADTAALTRVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ + + V + A + ++ ALV LG+ QA A Sbjct: 120 AERLVLELRDRIGPV---------PVGADSAAGVTTGAWPEQVRQALVGLGWTAAQADQA 170 Query: 181 VVSVLKK-EKNIADDSQIIRLALRAI 205 V +V + + + ++R A+R + Sbjct: 171 VTAVAETVDGAVPPVPVLLRQAIRLL 196 >gi|317121686|ref|YP_004101689.1| Holliday junction DNA helicase RuvA [Thermaerobacter marianensis DSM 12885] gi|315591666|gb|ADU50962.1| Holliday junction DNA helicase RuvA [Thermaerobacter marianensis DSM 12885] Length = 223 Score = 138 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 53/181 (29%), Positives = 91/181 (50%), Gaps = 7/181 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + L D V IDV GV + + +T L G+ L +R+DQ L Sbjct: 1 MIAFLRGELVALAGDEVWIDVGGVGFRVAVSRQTQRRLPPAGEPVRLLTRLVVREDQWSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F L +V GVG RVA+ VLS ++ EL +++LQ+ ++ ++PG+ K+ Sbjct: 61 YGFATADEQAAFDALLTVSGVGPRVALAVLSVLSPEELRRAVVLQDPALLTRVPGVGPKL 120 Query: 121 ASRIMTELKGKAIS-------LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 A R++TEL+ + +V + S +A++AL +LGY Sbjct: 121 ARRLLTELRDRLGEPLAEGAAAGAVAPAGGAASTPGGLPGGVATSPREDALAALESLGYS 180 Query: 174 Q 174 + Sbjct: 181 R 181 >gi|298242494|ref|ZP_06966301.1| Holliday junction DNA helicase RuvA [Ktedonobacter racemifer DSM 44963] gi|297555548|gb|EFH89412.1| Holliday junction DNA helicase RuvA [Ktedonobacter racemifer DSM 44963] Length = 196 Score = 138 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 99/206 (48%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G ++ + D+V + V G ++ P T+S LG+ G L HMR+D I L Sbjct: 1 MITSIHGILQTCHPDHVTVRVGGFGIQVFAPATTISGLGETGTEVELHTHFHMREDGIAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +++DR F L +V GVG RVA+ +LS + A L ++I ++ + + G+ ++ Sbjct: 61 YGFATEMDRDAFEQLIAVNGVGPRVALSLLSVMDAPALYKAIADEDQQRLGLAKGVGKRL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A++++ LKGK S+ V + AL+ LG+ +A A Sbjct: 121 AAQLILALKGKLPSI----------VPAGTISGVPSGKLQTEVLEALMGLGFSSAEAQAA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + ++ Q + ALR S Sbjct: 171 IAKIPQE--QAMTLEQQVTYALRTFS 194 >gi|312865841|ref|ZP_07726063.1| Holliday junction DNA helicase RuvA [Streptococcus downei F0415] gi|311098716|gb|EFQ56938.1| Holliday junction DNA helicase RuvA [Streptococcus downei F0415] Length = 196 Score = 138 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 42/205 (20%), Positives = 86/205 (41%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + + Y++++ G+ Y++ S ++ +++ +R+D L Sbjct: 1 MYDYLKGILTKITAKYIVVEAGGLGYMVNV-ANPYSFSDQMNQDIQIYLHYVVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 YGFHNEEEKAVFLNLISVSGIGPTTALAIVAVDDNEGLVAAIDNSDIKYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK + + K S A+ AL LGY + Sbjct: 120 AQQMVLDLAGKFVEVPQ-------ADGKTSPQAQSTNQNLNEAMEALQALGYKASELKKV 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + E I+ AL+ + Sbjct: 173 ---RVFFEGTDETAENYIKSALKML 194 >gi|94984833|ref|YP_604197.1| Holliday junction DNA helicase RuvA [Deinococcus geothermalis DSM 11300] gi|122986676|sp|Q1J0F6|RUVA_DEIGD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|94555114|gb|ABF45028.1| Holliday junction DNA helicase RuvA [Deinococcus geothermalis DSM 11300] Length = 198 Score = 138 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 93/205 (45%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + E +I GV Y ++CP TL L G L + +R+D L Sbjct: 1 MIAYLSGAVREVREASAVIVAGGVGYEVFCPASTLGRLV-PGQPAELNIRHVVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL + F LL V GVG ++A+ +LS + T + + ++ + K+++ + G+ K Sbjct: 60 FGFLDTDSLRLFDLLIGVSGVGPKLALSLLSALPVTAVAQGLLSGDVKLLSSVSGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K + + + +AI AL+ LG+ + Q + Sbjct: 120 AERLVLELQNKVP------EHLAAGAPVSAGKAALTSTAGRDAIEALLALGFREPQVRSV 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +L + +IR L + Sbjct: 174 VAELLAADPE-QSADALIRKGLGKL 197 >gi|254518551|ref|ZP_05130607.1| holliday junction DNA helicase motor protein [Clostridium sp. 7_2_43FAA] gi|226912300|gb|EEH97501.1| holliday junction DNA helicase motor protein [Clostridium sp. 7_2_43FAA] Length = 201 Score = 138 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 107/205 (52%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I+G +G+ DY++I+ G+ Y I+ T+S + KI + L++E +R+D + L Sbjct: 1 MYEYIRGKYKGINRDYIIIENNGIGYKIFTSGATMSSMPKIDEEVKLYLEQIVREDFLGL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + + F LL S+ GVGA+ A+ +LS L +I++ + K + + PGI K Sbjct: 61 YGFDAREELEMFKLLLSINGVGAKAALSLLSISRINNLRYAIMMGDEKHLCKAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K + + + + + + + S A+ AL+ LGY + +A A Sbjct: 121 AGRIILELKDKIKK--EDISEVIEGSGEFEDLMPNNASNIAEALGALLALGYSEKEAEAA 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + V K + II+ L+ + Sbjct: 179 LKKVDKTD----TLENIIKNCLKVL 199 >gi|256831252|ref|YP_003159980.1| Holliday junction DNA helicase RuvA [Desulfomicrobium baculatum DSM 4028] gi|256580428|gb|ACU91564.1| Holliday junction DNA helicase RuvA [Desulfomicrobium baculatum DSM 4028] Length = 198 Score = 138 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 57/207 (27%), Positives = 99/207 (47%), Gaps = 12/207 (5%) Query: 1 MIGKIKGNIEGLYEDY-VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI ++G + E+ VL+ GV Y ++ L+ L GD LFV T +R+D + Sbjct: 1 MIAYLEGTVLRRDEESCVLLTAGGVGYQLHLTSDGLAALPGAGDTARLFVHTLVREDALT 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LF F S +RQ F+ L +G + A+ +L + EL I ++ ++++PGI K Sbjct: 61 LFAFSSWEERQAFVTLLGAPKLGPKTALAMLGCYSPAELAACIAKEDVAALSRVPGIGAK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ + + +S + P+ + + +ALV+LGYG+ + Sbjct: 121 TAKRLL----------LDLKDKLVSSPSLLPGRTAPAPTASADCAAALVSLGYGRHEVDE 170 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 V V +KE ++ D IR AL+ + Sbjct: 171 VVRVVFEKEPDL-DAGSAIRQALKIFA 196 >gi|241889770|ref|ZP_04777068.1| holliday junction DNA helicase RuvA [Gemella haemolysans ATCC 10379] gi|241863392|gb|EER67776.1| holliday junction DNA helicase RuvA [Gemella haemolysans ATCC 10379] Length = 193 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 95/205 (46%), Gaps = 15/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG I + +++D G+ Y I L + T+F+ +R+D L Sbjct: 1 MYAYIKGKISEINPTNIVVDNNGIGYEIVVANPYEYQL---NEEKTVFISQQVREDSNIL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F+LL V+GVG + A+ +L+ T+ E++ +I Q+ + + PGI K Sbjct: 58 YGFSNKDQKKVFLLLLKVKGVGPKSALAILAGGTSEEIIGAIENQDVTYLTKFPGIGKKS 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +L+GK + + ++ ++ +AI AL LGY + + Sbjct: 118 AQQIILDLQGKVD----------FSMTNISSAPTAVNNYLSDAILALEALGYSKKELAKI 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + + ++ L+ + Sbjct: 168 EKKLSA--FDFSGVDEYVKQGLKLL 190 >gi|116513152|ref|YP_812059.1| Holliday junction DNA helicase motor protein [Lactococcus lactis subsp. cremoris SK11] gi|123025083|sp|Q02VS6|RUVA_LACLS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|116108806|gb|ABJ73946.1| Holliday junction DNA helicase subunit RuvA [Lactococcus lactis subsp. cremoris SK11] Length = 197 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 41/205 (20%), Positives = 90/205 (43%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G + + ++ID+ G+ Y+I + + ++V +R+D L Sbjct: 1 MFEYLNGKLVKISPTNIVIDLSGIGYLISV-ANPYAWSALMNTEVKIYVHQVIREDAHSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+++ ++ F+ L SV G+G + A+ +++ L+ +I + K + + PG+ K Sbjct: 60 YGFVNESEKALFLRLISVSGIGPKSALAIIAAADNEGLINAIDNSDIKYLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK + +V + + AI AL LGY + Sbjct: 120 AMQMVLDLAGKFDATGAVGISLLDA-------APAGNLALEEAIEALQALGYKATELKKI 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ + I+ AL+ + Sbjct: 173 EKKLEQEAG--LTSEEYIKSALKLM 195 >gi|224436530|ref|ZP_03657539.1| Holliday junction DNA helicase RuvA [Helicobacter cinaedi CCUG 18818] gi|313143033|ref|ZP_07805226.1| holliday junction ATP-dependent DNA helicase ruvA [Helicobacter cinaedi CCUG 18818] gi|313128064|gb|EFR45681.1| holliday junction ATP-dependent DNA helicase ruvA [Helicobacter cinaedi CCUG 18818] Length = 195 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 55/207 (26%), Positives = 97/207 (46%), Gaps = 13/207 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIR 59 MI ++G I + IDV GV Y + + S L G+ G + +R+D Sbjct: 1 MIVGLRGVIIRSEPMMIDIDVGGVIYGVQMSLNATSKLRGEGGKEVKIICTQIIREDSHL 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF+ ++++Q F L + GVG +VA+ +LS T E + I ++ + ++PGI K Sbjct: 61 LFGFVEEIEKQTFERLIKINGVGPKVALAILSTYTPMEFAKIISNKDVDALKKVPGIGAK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +IM ++ G L +S + + S A+ AL +LG+ A Sbjct: 121 GAGKIMVDVAGFFAGL-------ISDTSLADGKLSQENSLKNEALLALQSLGFKNTDAQK 173 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ + S++++LAL+ ++ Sbjct: 174 ALQGI-----EAQSVSELVKLALKKLA 195 >gi|218888287|ref|YP_002437608.1| Holliday junction DNA helicase RuvA [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|226725439|sp|B8DNJ8|RUVA_DESVM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|218759241|gb|ACL10140.1| Holliday junction DNA helicase RuvA [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 202 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 54/192 (28%), Positives = 93/192 (48%), Gaps = 8/192 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI ++G + + + ++ GV Y ++ P TLS L + G V T +R+D + Sbjct: 1 MIAYVEGRVAEISGNACVVVTEGGVGYEVHLPAHTLSRLPERGGQVAFHVRTEVREDALE 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF + +RQ FM+L ++ VGAR A+ +LS+ +L ++ + + ++ GI K Sbjct: 61 LFGFSTWDERQTFMVLTTISKVGARTALAILSQFRPDDLRRLVVEDDVLALTRVSGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A I ELK K ++ + +A++ L NLGY +D+A Sbjct: 121 TAQHIFLELKYKLKVEDLPAGLVLAGG-------AAPGGVFRDALAGLGNLGYLEDEAAP 173 Query: 180 AVVSVLKKEKNI 191 + VLK E ++ Sbjct: 174 VLKEVLKAEPDL 185 >gi|260903852|ref|ZP_05912174.1| Holliday junction DNA helicase, RuvA subunit [Brevibacterium linens BL2] Length = 206 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 96/204 (47%), Gaps = 11/204 (5%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 I + G + + D+++I GV + TLS + G L +R+D + LF Sbjct: 10 ISFLSGTVHRIAADHLVILTYGVGRRVNVTPDTLSN-TRHGADIELVTTLVVREDSMTLF 68 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF ++ + F +L S+ G+G R+AM +LS + EL +I Q++ + ++PGI K A Sbjct: 69 GFGTEDENHTFEVLLSISGIGPRLAMAILSVMGPGELAAAISNQDANALTRVPGIGKKGA 128 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 SRI+ EL+ K LS+ S + ALV LG+ + QA V Sbjct: 129 SRIILELENKLPKLSASEPGPQ----------LSFGGANQQVVDALVGLGWKEAQAADVV 178 Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205 V+ A S +++ +L+ + Sbjct: 179 QEVVNDLGQNAGTSALLKASLKVL 202 >gi|24380422|ref|NP_722377.1| Holliday junction DNA helicase RuvA [Streptococcus mutans UA159] gi|44888487|sp|Q8CWW3|RUVA_STRMU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|24378447|gb|AAN59683.1|AE015030_13 putative Holliday junction DNA helicase RuvA [Streptococcus mutans UA159] Length = 197 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 46/206 (22%), Positives = 96/206 (46%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKGN+ + Y++++ G+ Y+I S +I +++ +R+D L Sbjct: 1 MYDYIKGNLTKITAKYIVLETGGLGYVINV-ANPYSFSNQINQAIQIYIHHVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++ F+ L SV G+G A+ +++ LV++I + + + P I K Sbjct: 60 YGFHTEDEKAVFLNLISVSGIGPTSALAIIAADDNEGLVKAIDHSDVNYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK + ++ V +K + + A+ AL+ LGY ++ Sbjct: 120 AQQMVLDLAGKFVDINEV------STDKSKVSTINNNQELEEAVEALLALGYKTNE---- 169 Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205 + + K + D I+ AL+ + Sbjct: 170 LKKIEKFFEGTTDTAENYIKSALKML 195 >gi|56697949|ref|YP_168319.1| Holliday junction DNA helicase RuvA [Ruegeria pomeroyi DSS-3] gi|81349137|sp|Q5LNT7|RUVA_SILPO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|56679686|gb|AAV96352.1| Holliday junction DNA helicase RuvA [Ruegeria pomeroyi DSS-3] Length = 224 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 71/222 (31%), Positives = 116/222 (52%), Gaps = 17/222 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ D+VLIDV+GV YI+YC RTL+ L +G+ L+ + +R+D ++L Sbjct: 1 MIGKLTGRLDYRSTDHVLIDVRGVGYIVYCSDRTLAALPGVGEVVALYTDMVVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+S +++W LL SVQGVGA+V++ +L + + +I L + + G+ K Sbjct: 61 FGFMSLAEKEWHRLLCSVQGVGAKVSLAILGALGPDGVSRAIALGDWASVKSAKGVGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQ----------------QDMSCVNKEQAHICSMPSFAINAI 164 A RI+ +LK KA + ++ + + ++ A + A+ Sbjct: 121 AQRIVLDLKDKAPGVMAMGGTVAQAMEGAVEVVEVIEPAAPAPRKAAPPGGAGAATAGAL 180 Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 SAL NLGYG A AV + + +IR ALR ++ Sbjct: 181 SALSNLGYGPSDAAAAVAQAAAEAPEAGET-DLIRAALRLLA 221 >gi|259046890|ref|ZP_05737291.1| Holliday junction DNA helicase RuvA [Granulicatella adiacens ATCC 49175] gi|259036513|gb|EEW37768.1| Holliday junction DNA helicase RuvA [Granulicatella adiacens ATCC 49175] Length = 195 Score = 137 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 89/205 (43%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G + + ++IDV GV Y + + + V+ +R+D I L Sbjct: 1 MYEYLNGELAHILPTAIVIDVHGVGYQV-VFANPYRLQDSLKKQIKVLVQQVVREDSITL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+S +R+ F L SV G+G + AM +L+ V ++ N + + PG+ K Sbjct: 60 YGFISSEERELFQRLISVSGIGPKSAMSILANDDTEGFVNAVESGNVTYLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK +L +A + + + A AL+ LGY + Sbjct: 120 AQQIILDLKGKFEALPEE---------TTKAVVSTNQATLEEAKEALLGLGYSAKEIKKI 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 S+ + + +++A + + Sbjct: 171 WKSLEAAAPS--TTQEALKVAFKLL 193 >gi|254511523|ref|ZP_05123590.1| Holliday junction DNA helicase RuvA [Rhodobacteraceae bacterium KLH11] gi|221535234|gb|EEE38222.1| Holliday junction DNA helicase RuvA [Rhodobacteraceae bacterium KLH11] Length = 225 Score = 137 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 121/223 (54%), Gaps = 18/223 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G ++ D+VLIDV+GV Y++YC RT++ L +G+ +++ + +R+D ++L Sbjct: 1 MIGKLTGRLDYRAADHVLIDVRGVGYLVYCSDRTMAALPGVGEAVSIYTDMVVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS ++++W LL SVQGVGA+V++ +LS + + +I L + + G+ K Sbjct: 61 YGFLSLVEKEWHRLLCSVQGVGAKVSLAILSALGPDGVSRAIALGDWGAVKAAKGVGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFA-----------------INA 163 A RI+ +LK KA + ++ ++ + + A A Sbjct: 121 AQRIVLDLKDKAPGVMAMGGTVTEAMDGPPLEVVELAEPAPAPKRGAQPASGAAAASAGA 180 Query: 164 ISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 +SAL NLGYG A +AV + A ++ +IR AL+ ++ Sbjct: 181 LSALANLGYGPSDAASAVAEAAASLPD-AGEADLIRAALKLLA 222 >gi|172058107|ref|YP_001814567.1| Holliday junction DNA helicase RuvA [Exiguobacterium sibiricum 255-15] gi|229560031|sp|B1YJR2|RUVA_EXIS2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|171990628|gb|ACB61550.1| Holliday junction DNA helicase RuvA [Exiguobacterium sibiricum 255-15] Length = 197 Score = 137 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 89/205 (43%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + ++V I+V G+ Y I P G + ++ ++R+DQ L Sbjct: 1 MIEFVRGEVAYVCAEFVTIEVGGIGYKIVAPNPFFYRTGD--EQVIVYTYHYVREDQEVL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +R F L V G+G + ++ +++ LVE+I + + + PG+ K Sbjct: 59 FGFRSRRERALFTKLLGVTGIGPKGSLAIVASGDVDALVEAIEQEKESYLIKFPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A ++ +LKGK L+ + A AL LGY + + Sbjct: 119 AKQMTLDLKGKLAELAPDYIPSEGLF-------AQGNAELNEACEALTALGYSEREVEK- 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V L+ + Q ++ AL+ + Sbjct: 171 VKKALQ--GEVLSTDQYVKRALQLL 193 >gi|227825064|ref|ZP_03989896.1| holliday junction DNA helicase ruvA [Acidaminococcus sp. D21] gi|226905563|gb|EEH91481.1| holliday junction DNA helicase ruvA [Acidaminococcus sp. D21] Length = 201 Score = 137 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 54/206 (26%), Positives = 98/206 (47%), Gaps = 8/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG IKG ++ + +Y ++ QGV Y IY L + + D ++ +R+D + L Sbjct: 1 MIGFIKGRVDTIGSNYAFVETQGVGYRIYMNTSDLGRMV-LDDKVKVYTYLAVREDALTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS F L +V G+G +VA G+LS + + +I ++ K + ++PGI K Sbjct: 60 YGFLSQEAYGLFTKLITVSGIGPKVAQGILSASKVDDFLLAIKNRDVKFLTKLPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + + N S + AL +LGY Q++ + Sbjct: 120 AERMLLELKD-----LTGPEGPLPESNGGFLAPEGPASALTETMEALASLGYTQNEISGV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + K +++ AL+ ++ Sbjct: 175 MNRI--KVTADMSAEDLLKKALQVMA 198 >gi|160947139|ref|ZP_02094306.1| hypothetical protein PEPMIC_01071 [Parvimonas micra ATCC 33270] gi|158446273|gb|EDP23268.1| hypothetical protein PEPMIC_01071 [Parvimonas micra ATCC 33270] Length = 200 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 106/205 (51%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G ++ +Y DY++ID G+ Y I+ TL + +GD+ T++ + +++D + L Sbjct: 1 MYEYISGELKFIYNDYIVIDNGGIGYKIFTSNNTLFNV-TVGDYYTIYTDYIVKEDYVAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F LL SV +G +VA G+LS ++ L +I+ ++ +A G+ K Sbjct: 60 FGFKTMDELSMFKLLVSVNSIGPKVACGILSSMSVDSLKLTIVNGDAVALATAKGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELK K S+ S+ +D+S + AL+NLG+ ++ Sbjct: 120 AQKIILELKDKI-SIDSISSKDISGMEASTLDSGKDLEKRELVSDALINLGFMKNDIERF 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + S+ E I II+L+++ + Sbjct: 179 LSSINIDEMEI---EDIIKLSMKKL 200 >gi|225021302|ref|ZP_03710494.1| hypothetical protein CORMATOL_01321 [Corynebacterium matruchotii ATCC 33806] gi|224946035|gb|EEG27244.1| hypothetical protein CORMATOL_01321 [Corynebacterium matruchotii ATCC 33806] Length = 198 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 94/205 (45%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + + +I+ GV Y + TL L + G + + +R++ L Sbjct: 1 MIVSLRGTVIDITAHHAVIECAGVGYQVLATPSTLGHLTR-GAETFILITMIVREESQTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL R F+ LQ+V G+G ++A+ S T EL +I ++K + +IPG+ ++ Sbjct: 60 YGFLDAATRDMFVTLQTVSGLGPKLALAAQSVYTTPELAHAITHGDTKTLQKIPGVGKRM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + ++ + V + AL +LG+ + A Sbjct: 120 AERMVVDLKDKVATYATPETPTPAAVPHI--------DTYEQVLEALASLGFAEKTAEPV 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +VL + +R +L + Sbjct: 172 LTTVLAADP-TLTTPAALRASLNLL 195 >gi|160915302|ref|ZP_02077515.1| hypothetical protein EUBDOL_01311 [Eubacterium dolichum DSM 3991] gi|158433101|gb|EDP11390.1| hypothetical protein EUBDOL_01311 [Eubacterium dolichum DSM 3991] Length = 193 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 100/206 (48%), Gaps = 18/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I D ++I+ G+ Y IY ++ L+ H+R+D I L Sbjct: 1 MIAFIKGIIHSYSNDSLIIENNGIGYRIYISNP---QSVRLNSEVILYTYQHVREDAITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F+ L SV+GVG + A+ +L+ +++E+I + K++ +PGI K Sbjct: 58 FGFTTMEEHDLFLQLISVKGVGPKTALAMLAVCPVKQMIEAIEHNDVKLLKSLPGIGAKS 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK + S +Q + ++AI AL LGY + + Sbjct: 118 ASQIVLDLKGKLVEEVSEIQ-------------VKENAELVDAIEALKALGYKNAEINSI 164 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + E++ A Q IR AL ++ Sbjct: 165 KKEL--SEESFATSDQYIRKALSILA 188 >gi|305681259|ref|ZP_07404066.1| Holliday junction DNA helicase RuvA [Corynebacterium matruchotii ATCC 14266] gi|305659464|gb|EFM48964.1| Holliday junction DNA helicase RuvA [Corynebacterium matruchotii ATCC 14266] Length = 198 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 93/205 (45%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + + +I+ GV Y + TL L + G + + +R++ L Sbjct: 1 MIVSLRGTVIDITAHHAVIECAGVGYQVLATPTTLGHLTR-GAETFILITMIVREESQTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL R F LQ+V G+G ++A+ S T EL +I ++K + +IPG+ ++ Sbjct: 60 YGFLDAATRDMFATLQTVSGLGPKLALAAQSVYTTPELAHAITHGDTKTLQKIPGVGKRM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +LK K + ++ + V + AL +LG+ + A Sbjct: 120 AERMVVDLKDKVATYAAPETPTTAAV--------PHTDTYEQVLEALASLGFAEKTAEPV 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +VL + +R +L + Sbjct: 172 LTTVLAADP-TLTTPAALRASLNLL 195 >gi|145224407|ref|YP_001135085.1| Holliday junction DNA helicase motor protein [Mycobacterium gilvum PYR-GCK] gi|315444739|ref|YP_004077618.1| Holliday junction DNA helicase, Ruvsubunit alpha [Mycobacterium sp. Spyr1] gi|189045758|sp|A4TBQ6|RUVA_MYCGI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|145216893|gb|ABP46297.1| DNA recombination protein RuvA, domain I [Mycobacterium gilvum PYR-GCK] gi|315263042|gb|ADT99783.1| Holliday junction DNA helicase, RuvA subunit [Mycobacterium sp. Spyr1] Length = 195 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 51/205 (24%), Positives = 82/205 (40%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+V+I+ GV Y + TL+ L + G L +R+D L Sbjct: 1 MIASVRGEVLDIALDHVVIEAAGVGYKVMATPATLATL-RRGSEARLITAMIVREDSQTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F+ L V G+G +A+G L+ L ++I + + +IP + K Sbjct: 60 YGFADSDARDLFLTLLGVSGIGPSIALGALAMYDGPTLRQAIGDGDLTALTRIPKVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A + L+ K + ALV LG+ QA A Sbjct: 120 AELLALTLRDKV-----------GSSTSSGVAAAGGHGIRGPVVEALVGLGFAVKQAEEA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 VL + A S +R AL + Sbjct: 169 TDKVLANDPE-ATTSSALRAALSML 192 >gi|148244503|ref|YP_001219197.1| holliday junction DNA helicase RuvA [Candidatus Vesicomyosocius okutanii HA] gi|146326330|dbj|BAF61473.1| holliday junction DNA helicase RuvA [Candidatus Vesicomyosocius okutanii HA] Length = 202 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 49/203 (24%), Positives = 95/203 (46%), Gaps = 9/203 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G I +L++V + Y I C + + +G + +L+ ++++ L Sbjct: 3 MIGKLSGTILEKNPPEILLEVDKIGYEILCSMSSFYAMGDE-EQLSLYTHLSIKENAHIL 61 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+S ++ F L + G+G +VA+ +LS + L++ I N ++A+ PGI +K Sbjct: 62 YGFISKDEKTLFRELIRINGIGPKVALAILSHLDINSLIKVITDGNDTLLAKTPGIGIKT 121 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK + L + + K A +AL LG+ ++ Sbjct: 122 AQKLIVELKDRLEKLKLNNENHKNIHIKF-----KKNPNIKQASAALQALGFKARESEKM 176 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 + + + N +IR AL+ Sbjct: 177 LSVI---KDNSLSTKALIRQALQ 196 >gi|194476717|ref|YP_002048896.1| putative holliday junction DNA helicase RuvA [Paulinella chromatophora] gi|171191724|gb|ACB42686.1| putative holliday junction DNA helicase RuvA [Paulinella chromatophora] Length = 215 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 46/212 (21%), Positives = 97/212 (45%), Gaps = 7/212 (3%) Query: 1 MIGKIKGNIEGLYE----DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MI ++G + ++ + L++ G+ Y +Y R L K + L++ +R+ Sbjct: 1 MISWLRGELLKSWQQGTYNVALLNCGGIGYEVYLNRRDWEDLPKTREILELYIHMLVREK 60 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 Q L+GF+ DR F + ++ G+G ++A+ + + + L+E+II + + + GI Sbjct: 61 QWTLYGFIEFDDRDIFREIININGIGPQLALALQTELRGPRLIEAIINGDLVTLTKAHGI 120 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 + A R+ TEL+ + ++L + + Q + + + + L LGY + + Sbjct: 121 GRRTAERLSTELRSRFVNLYHTNEVYLKQEGSIQG-VLNDSDLVHDIQNTLKTLGYNKLE 179 Query: 177 ATTAVVSVLKKEK--NIADDSQIIRLALRAIS 206 A+ + K +D +R AL +S Sbjct: 180 IQRAINKLKSKSSLVENSDFDVWLREALHWLS 211 >gi|195978973|ref|YP_002124217.1| Holliday junction DNA helicase RuvA [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|229560129|sp|B4U0J5|RUVA_STREM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|195975678|gb|ACG63204.1| Holliday junction DNA helicase RuvA [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 198 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 88/205 (42%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ Y+I S + T+++ +R+D L Sbjct: 1 MYDYIKGQLTKITAKYIVVEANGLGYMITV-ANPYSFTDCVNQQVTIYLHQVIREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S+ ++ F+ L SV G+G A+ +++ LV +I + + + P I K Sbjct: 60 FGFHSEEEKDVFLKLISVSGIGPTTALAIVAVDDNRGLVNAIDNSDITYLMRFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK V+ +K AI AL+ LGY + Sbjct: 120 AQQMVLDLAGKF------VEAPKEESSKLPKAKHQENEQLDEAIEALLALGYKATELKK- 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + E Q I+ AL+ + Sbjct: 173 IRAFF--EGTSETAEQYIKSALKML 195 >gi|297195496|ref|ZP_06912894.1| Holliday junction DNA helicase [Streptomyces pristinaespiralis ATCC 25486] gi|197722111|gb|EDY66019.1| Holliday junction DNA helicase [Streptomyces pristinaespiralis ATCC 25486] Length = 202 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 58/209 (27%), Positives = 99/209 (47%), Gaps = 13/209 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L +I+V G+ + C TLS L +IG L +R+D + L Sbjct: 1 MIAFVSGPVAALAPTTAVIEVGGIGMAVQCTPNTLSGL-RIGQEAKLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ + L ++ + K + +PGI K Sbjct: 60 YGFADDDERQVFELLQTASGVGPRLAQAMLAVHSPDALRLAVATGDEKALTAVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK + + V++ S+ +AL+ LGY +A A Sbjct: 120 AQKLLLELKDRLGEPLGTGPAVGAPVSR---------SWRDQLHAALIGLGYATREADEA 170 Query: 181 VVSV---LKKEKNIADDSQIIRLALRAIS 206 V +V + + ++R AL+++S Sbjct: 171 VAAVAPQAEAMGAAPEVGPLLRAALQSLS 199 >gi|290581353|ref|YP_003485745.1| putative Holliday junction DNA helicase [Streptococcus mutans NN2025] gi|254998252|dbj|BAH88853.1| putative Holliday junction DNA helicase [Streptococcus mutans NN2025] Length = 198 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 46/206 (22%), Positives = 96/206 (46%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKGN+ + Y++++ G+ Y+I S +I +++ +R+D L Sbjct: 2 MYDYIKGNLTKITAKYIVLEAGGLGYVINV-ANPYSFSNQINQAIQIYIHHVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++ F+ L SV G+G A+ +++ LV++I + + + P I K Sbjct: 61 YGFHTEDEKAVFLNLISVSGIGPTSALAIIAADDNEGLVKAIDHSDVNYLMKFPKIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK + ++ V +K + + A+ AL+ LGY ++ Sbjct: 121 AQQMVLDLAGKFVDINEV------STDKSKVSTINNNQELEEAVEALLALGYKTNE---- 170 Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205 + + K + D I+ AL+ + Sbjct: 171 LKKIEKFFEGTTDTAENYIKSALKML 196 >gi|268317861|ref|YP_003291580.1| Holliday junction DNA helicase RuvA [Rhodothermus marinus DSM 4252] gi|262335395|gb|ACY49192.1| Holliday junction DNA helicase RuvA [Rhodothermus marinus DSM 4252] Length = 200 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 49/204 (24%), Positives = 93/204 (45%), Gaps = 7/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + V++DV G+ Y + P T L ++G L ++R+D + L Sbjct: 1 MIAYVSGKLAVKKLTEVVVDVHGLGYRLLIPTSTYEVLPEVGAPVHLLTHYYVREDAVLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +R F +L V GVG R+A+ LS ++ ++ E++ + + + +IPG+ ++ Sbjct: 61 FGFATEAERALFEVLLGVSGVGPRLALAALSALSPAQIHEAVTTGDVQTLKRIPGVGQRL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ + L + + + A + Sbjct: 121 AERLIVELRDRLALLDLAELTPAGVDDVRAQARVDALAALEALGL-------PRAAAERS 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + VL++ I ++IRLALR Sbjct: 174 LRKVLREHPGIQSAEELIRLALRE 197 >gi|325661158|ref|ZP_08149785.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium 4_1_37FAA] gi|325472665|gb|EGC75876.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium 4_1_37FAA] Length = 200 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 106/205 (51%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + + E+ V+++VQG+ Y I+ P + ++ L IG + ++R+D ++L Sbjct: 1 MISYIKGELAAVGEEQVVVEVQGIGYGIFMPGQAMTMLPPIGSEVKIHTYLNVREDAMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ D + F LL V G+G + + +LS++T +L +++ + K I+ PGI K Sbjct: 61 FGFLTKDDLKVFRLLIGVNGIGPKGGLNILSKMTPDDLRFAVLAGDVKAISAAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK K + ++ + + A+ ALV LGYG ++ A Sbjct: 121 AEKLIIELKDKL-----NIDDVLTKEEEVMSVPSGGADMQSEAVQALVALGYGSAESLKA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V ++++ +L+ + Sbjct: 176 VKKV--PMTETMTVEELLKQSLKFM 198 >gi|302389938|ref|YP_003825759.1| Holliday junction DNA helicase RuvA [Thermosediminibacter oceani DSM 16646] gi|302200566|gb|ADL08136.1| Holliday junction DNA helicase RuvA [Thermosediminibacter oceani DSM 16646] Length = 192 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 52/207 (25%), Positives = 92/207 (44%), Gaps = 17/207 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKI-GDFCTLFVETHMRQDQIR 59 M+ I+G + + ++ ++DV G+ + + + T + + + LF H++++ Sbjct: 1 MLDYIRGRLRDIGPNFAILDVAGLGFRCFISLNTYNKIKLLKNSKVLLFTCLHVKEEGAE 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF +R+ F+LL V GVG RVA+ +LS + L I+ ++ K + +PGI K Sbjct: 61 LFGFSELHEREAFILLNKVSGVGPRVALSILSWLEPKRLKSVIMSEDVKTLTSVPGIGNK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I+ ELK K +L A AL+ LG+ + Sbjct: 121 TAQKIIFELKDKIKNLPVETVSQTEQAALC------------EARDALLALGFSIGEVQR 168 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 + + +II ALR I+ Sbjct: 169 VLNEI----GTATTVEEIISNALRLIA 191 >gi|223933912|ref|ZP_03625874.1| Holliday junction DNA helicase RuvA [Streptococcus suis 89/1591] gi|302023155|ref|ZP_07248366.1| Holliday junction DNA helicase RuvA [Streptococcus suis 05HAS68] gi|330831910|ref|YP_004400735.1| Holliday junction DNA helicase RuvA [Streptococcus suis ST3] gi|223897414|gb|EEF63813.1| Holliday junction DNA helicase RuvA [Streptococcus suis 89/1591] gi|329306133|gb|AEB80549.1| Holliday junction DNA helicase RuvA [Streptococcus suis ST3] Length = 196 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 91/205 (44%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ QGV YI+ + G++ T++ +R+D L Sbjct: 1 MYDYIKGILTKITAKYIVVETQGVGYILQV-ANPYAYSGQVQQEVTVYTHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++ F+ L SV G+G A+ +++ LV +I +N + + P I K Sbjct: 60 YGFATENEKSVFLSLISVSGIGPTTALAIIAVDDNDGLVRAIEQKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + +Q S A+ A+ LGY + Sbjct: 120 AQQMILDLEGKFV-------MSEEAGPVQQVAPSSENIALDEAMEAMEALGYRPAELKK- 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + A I+ AL+ + Sbjct: 172 IKKFFEGTNDTA--ENYIKSALKML 194 >gi|329767086|ref|ZP_08258614.1| Holliday junction DNA helicase RuvA [Gemella haemolysans M341] gi|328837811|gb|EGF87436.1| Holliday junction DNA helicase RuvA [Gemella haemolysans M341] Length = 193 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 95/205 (46%), Gaps = 15/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG I + +++D G+ Y + L + +F+ +R+D L Sbjct: 1 MYAYIKGKISEINPTNIVVDNNGIGYEVVVANPYEYQL---NEEKIVFISQQVREDSNIL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F+LL V+GVG + A+ +L+ T+ E++ +I Q+ + + PGI K Sbjct: 58 YGFSNKDQKKVFLLLLKVKGVGPKSALAILAGGTSEEIIGAIENQDVNYLTKFPGIGKKS 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +L+GK + + ++ ++ +A+ AL LGY + + T Sbjct: 118 AQQIILDLQGKVD----------FSMTNISSAPTAVNNYLSDAMLALEALGYSKKELTKI 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + A + ++ L+ + Sbjct: 168 EKKLSA--FDFAGVDEYVKQGLKLL 190 >gi|307564556|ref|ZP_07627096.1| Holliday junction DNA helicase RuvA [Prevotella amnii CRIS 21A-A] gi|307346714|gb|EFN92011.1| Holliday junction DNA helicase RuvA [Prevotella amnii CRIS 21A-A] Length = 205 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 60/208 (28%), Positives = 97/208 (46%), Gaps = 7/208 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHM---RQDQ 57 MI IKG + + +++ G+ Y I + T S + D E + R D Sbjct: 1 MIEYIKGELIEMTPAIAIVEAYGIGYAINISLNTYSDIQGKKDIKLYIYEAIITGGRDDS 60 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 L+GF S +R + LL +V GVGA A +LS T +EL I +++ + GI Sbjct: 61 YTLYGFSSKQERSLYKLLITVSGVGANTARMILSSFTPSELCNVISNGEERMLKSVKGIG 120 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 +K A RI+ +L+ K I + VN ++ + AISAL LG+ + Sbjct: 121 LKTAQRIIVDLRDKIIQADIANEL---YVNTSSNNLNIDTAVKDEAISALTMLGFSPVSS 177 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 + V+ VL K+ N+ Q+++ AL+ I Sbjct: 178 SKVVIEVLTKDANLP-VEQVVKQALKII 204 >gi|254383613|ref|ZP_04998963.1| holliday junction ATP-dependent DNA helicase ruvA [Streptomyces sp. Mg1] gi|194342508|gb|EDX23474.1| holliday junction ATP-dependent DNA helicase ruvA [Streptomyces sp. Mg1] Length = 210 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 54/212 (25%), Positives = 95/212 (44%), Gaps = 11/212 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L +I+V GV + C T++ L ++G+ L +R+D + L Sbjct: 1 MIAFVSGPVAALAPTLAVIEVGGVGMAVQCTPNTIAAL-RVGEPARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L + L ++ + + + +PGI K Sbjct: 60 YGFADDDERQVFELLQTASGVGPRLAQAMLGVHSPDALRLAVESGDERALTAVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ E V ++A + +AL+ LGY A A Sbjct: 120 AQKLLLE----LKGKLGAPLGSSGLVGAQRAAAAGPAPWTEQLSAALIGLGYASRDAEEA 175 Query: 181 VVSVLKK------EKNIADDSQIIRLALRAIS 206 V +V + A Q++R AL++++ Sbjct: 176 VSAVTPQAEAAIAAGGSAPVPQLLRAALQSLN 207 >gi|300868186|ref|ZP_07112818.1| Holliday junction ATP-dependent DNA helicase ruvA [Oscillatoria sp. PCC 6506] gi|300333810|emb|CBN58002.1| Holliday junction ATP-dependent DNA helicase ruvA [Oscillatoria sp. PCC 6506] Length = 207 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 49/212 (23%), Positives = 98/212 (46%), Gaps = 12/212 (5%) Query: 1 MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MI +KG + + + ++++V + Y + R L +G+ +F +++D Sbjct: 1 MINYLKGTVADIQKGNNRVMLILEVNQIGYEVQILPRMTGQLPAMGEVVQVFTHQQVKED 60 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 Q+ L+GF+S +R F L SV G+GA++A+ +L + +LV++I+ N++++A+ PG+ Sbjct: 61 QMVLYGFISGAERNLFRQLVSVSGIGAQLAIALLETLGLQDLVQAIVGGNTRILAKTPGV 120 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 K A R++ EL+ K + S L+ LGY + Sbjct: 121 GNKTAERLVLELRTKLSEWRNQEGLSTS------VPAGVSSVIQEEVEMTLLALGYTGAE 174 Query: 177 ATTAVVSVLKK--EKNIADDSQIIRLALRAIS 206 A+ ++ + + IR A+ +S Sbjct: 175 VMQALQALSQDPSLLKKGNAEDWIREAIAWLS 206 >gi|311113689|ref|YP_003984911.1| crossover junction ATP-dependent DNA helicase RuvA [Rothia dentocariosa ATCC 17931] gi|310945183|gb|ADP41477.1| crossover junction ATP-dependent DNA helicase RuvA [Rothia dentocariosa ATCC 17931] Length = 206 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 58/203 (28%), Positives = 101/203 (49%), Gaps = 12/203 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G++ + + ++DV G ++ RTLS L + G TL +R+D + L Sbjct: 1 MIASLTGHVTHVGLESAILDVNGFGMLVRATARTLSNL-RTGSTATLLTSMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F ++ SV G+G R+A+ VLS TATE+ ++ + K ++PGI K Sbjct: 60 YGFAEPAEREVFEMMLSVSGIGPRIALAVLSVHTATEVERAVATGDDKAFTKVPGIGPKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL GK I +S E+ ++ + AL +LG+ + A A Sbjct: 120 ARRIVLELAGKLI---------LSKDQAEENAPAQGIAWKPQVMDALTSLGWSEKDADAA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 + + ++ + + + ALR Sbjct: 171 IDAYVQHNPDAEK--EAVSAALR 191 >gi|304320107|ref|YP_003853750.1| Holliday junction DNA helicase RuvA [Parvularcula bermudensis HTCC2503] gi|303299010|gb|ADM08609.1| Holliday junction DNA helicase RuvA [Parvularcula bermudensis HTCC2503] Length = 202 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 106/206 (51%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L + +IDV GV Y + R LS L + G L ET + + IRL Sbjct: 1 MIAALHGTVSVLSGENAIIDVNGVGYEVAATPRLLSSLAQ-GQEVRLITETLVAETYIRL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 F + +R F LLQ+VQGVGA+ A+ +LS +T +L +++ + ++A+ G+ K+ Sbjct: 60 VAFQTIEERLTFRLLQTVQGVGAKAALAILSALTPADLFDAVEAGDKAMVARAQGVGPKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+TELKGK +V + + ++ S A +A++ALV LG+ A Sbjct: 120 ALRIVTELKGKC---GGIVGAFPAVASPRATSAAAVDSPAEDAVAALVALGFDHGAARRT 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + ++ + + +I L+ ++ Sbjct: 177 ISTL--PDLETSRTEDLITAGLKTLA 200 >gi|229817634|ref|ZP_04447916.1| hypothetical protein BIFANG_02904 [Bifidobacterium angulatum DSM 20098] gi|229785423|gb|EEP21537.1| hypothetical protein BIFANG_02904 [Bifidobacterium angulatum DSM 20098] Length = 205 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 60/210 (28%), Positives = 102/210 (48%), Gaps = 14/210 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G +E + +I+V V Y + P LS L G ++ ++ QD I L Sbjct: 1 MIGSLRGTVEMVDTTQAVIEVGSVGYEVRMPSADLSRL-HTGQETRVWTYLNVSQDAITL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL ++ F+ L V GVG +VA+ +LS +TA +L +++ ++ +A+ PGI K Sbjct: 60 YGFLDSSSKKMFLQLIKVNGVGPKVALSLLSTLTANDLAKAVADNDATALAKAPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELKG + S + + A + L++LG+ Q A A Sbjct: 120 AQKIILELKGSINLEDLGEKAPQSGASTDPG--------AKQVVEGLMSLGWHQQDAQYA 171 Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205 V + + D Q++RLAL ++ Sbjct: 172 VQEACESNGIAMPLSQEDVPQVLRLALTSL 201 >gi|270290977|ref|ZP_06197200.1| Holliday junction DNA helicase RuvA [Pediococcus acidilactici 7_4] gi|304385248|ref|ZP_07367593.1| crossover junction ATP-dependent DNA helicase RuvA [Pediococcus acidilactici DSM 20284] gi|270280373|gb|EFA26208.1| Holliday junction DNA helicase RuvA [Pediococcus acidilactici 7_4] gi|304328455|gb|EFL95676.1| crossover junction ATP-dependent DNA helicase RuvA [Pediococcus acidilactici DSM 20284] Length = 195 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 42/205 (20%), Positives = 81/205 (39%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G + + Y++IDV GV Y++ S +V + + + L Sbjct: 1 MYEYLNGVVVDINPAYIVIDVNGVGYLVNV-ANPYSFKPDEKQKV--YVHQAVSETENTL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +D++ F+ L V+G+G + A+ +L+ + ++ + + + P I K Sbjct: 58 YGFKKYVDKELFLNLLKVKGIGPKSALAILANDDHQGFIRAVNNDDVNYLKKFPKIGPKA 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + + AI AL LGY + + Sbjct: 118 AKQIILDLKGKI--------TSNEPSGPLFEMPTTTNNTLDEAIEALAALGYSERELKKI 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + E + Q I L+ + Sbjct: 170 TPKL--DELSNQTTDQYISAGLKLL 192 >gi|221632653|ref|YP_002521874.1| Holliday junction DNA helicase RuvA [Thermomicrobium roseum DSM 5159] gi|254767395|sp|B9KYT2|RUVA_THERP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|221156321|gb|ACM05448.1| Holliday junction DNA helicase RuvA [Thermomicrobium roseum DSM 5159] Length = 191 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 99/206 (48%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + VL+DVQGV + + TL LG+ GD +L +R+D++ L Sbjct: 1 MIRGVRGTLVAKRSGEVLVDVQGVTFRVQTSATTLQELGEPGDLVSLVTHLIVREDELAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ + + F+ L +V GVG R A+ +LS L E I + + +A+ PGI K Sbjct: 61 YGFATEAELELFLSLLAVSGVGPRGALNLLSLAAPDRLTEWIRGERIEELARAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ EL+G+ +L+ V + ++AL LGY +A A Sbjct: 121 ASRIVLELRGRLPALTEVQAGE---------------PIDQELVAALQALGYTAQEARQA 165 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + I ALR ++ Sbjct: 166 ATH--PEVRRAPSLEERIVAALRQLA 189 >gi|289425381|ref|ZP_06427158.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes SK187] gi|289428316|ref|ZP_06430003.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes J165] gi|295130717|ref|YP_003581380.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes SK137] gi|289154359|gb|EFD03047.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes SK187] gi|289158465|gb|EFD06681.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes J165] gi|291375923|gb|ADD99777.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes SK137] gi|332675562|gb|AEE72378.1| holliday junction ATP-dependent DNA helicase RuvA [Propionibacterium acnes 266] Length = 201 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 53/208 (25%), Positives = 97/208 (46%), Gaps = 10/208 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI G + +V++D GV + CP T + +I +L +R++ + L Sbjct: 1 MISHFSGMVSAAGPTWVVLDNHGVGIKVLCPPATAAS-ARINQDMSLHTSLVVREESLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ DR F L+Q+ GVG ++A ++S + A +L +I ++ + ++PGI K Sbjct: 60 YGFVEADDRDAFELVQTASGVGPKLAAAIMSVLDAAQLATAITEEDDATLCRVPGIGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A++++ ELK K +L+ + + + LV LG+ A A Sbjct: 120 AAKMILELKDKVAALTPRGASVSGATH-------VVAPWREQVAEGLVGLGWSAKDAEKA 172 Query: 181 VVSV--LKKEKNIADDSQIIRLALRAIS 206 V V LK+ ++R ALR+++ Sbjct: 173 VDKVAALKEADPAMTIGNLMRAALRSLA 200 >gi|223986042|ref|ZP_03636071.1| hypothetical protein HOLDEFILI_03377 [Holdemania filiformis DSM 12042] gi|223961992|gb|EEF66475.1| hypothetical protein HOLDEFILI_03377 [Holdemania filiformis DSM 12042] Length = 193 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 102/205 (49%), Gaps = 19/205 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + + D+++I+ QG+ Y ++ L +F H+R+D+ L Sbjct: 1 MIAMIKGTVFAVGLDWIIIENQGIGYKVFFSRPEAVRL---NQEVRVFTYQHVREDEFSL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLS ++ F+ L SV+G+G + AM +L+ T ++V+ I + + ++PGI K Sbjct: 58 FGFLSMEEQDLFVKLISVKGLGPKTAMNMLAAATYQQMVQMIEQGDVAALKKMPGIGAKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK + E+ +A+ AL LGY Q + + Sbjct: 118 ASQIILDLKGKLVR--------------EETAEGKSSQAIEDALEALKALGYKQSELSG- 162 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + V+++ + + ++L L+ + Sbjct: 163 LSKVMREHPD-KTTDEYVKLGLQHL 186 >gi|255327194|ref|ZP_05368269.1| holliday junction DNA helicase RuvA [Rothia mucilaginosa ATCC 25296] gi|255295812|gb|EET75154.1| holliday junction DNA helicase RuvA [Rothia mucilaginosa ATCC 25296] Length = 206 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 55/207 (26%), Positives = 102/207 (49%), Gaps = 12/207 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + D+ +I+V G ++Y RTLS L + G+ T+ +R++ + L Sbjct: 1 MIASLTGRVAQVGLDHAVINVNGFGMLVYATARTLSKL-RTGEEATVLTTMIVREESMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F ++ SV G+G R+A+ VLS TA E+ ++ + K ++PGI K Sbjct: 60 YGFSEPAEREVFDMMLSVSGIGPRIALAVLSVHTAAEVERAVATGDDKAFTKVPGIGPKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL GK I +S ++ + + + AL +LG+ + A+ A Sbjct: 120 ARRIVLELAGKLI---------LSDGQTDELPLSQGIVWKPQVLDALTSLGWSEKDASAA 170 Query: 181 VVSVLKKEKNIAD--DSQIIRLALRAI 205 + + ++ +R L ++ Sbjct: 171 IDAYVQHNPAAETEPVGVALRGVLASL 197 >gi|77408136|ref|ZP_00784882.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae COH1] gi|77173236|gb|EAO76359.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae COH1] Length = 196 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 92/205 (44%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + +++++ G+ Y+IY S G + T+++ +R D L Sbjct: 1 MYDYIKGKLSKITAKFIVVETAGLGYVIYV-ANPYSFSGYVNQEVTIYLHQVIRDDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTENEKEIFLNLISVSGIGPTTALAIIAVDDNEGLVSAIDNSDIKYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK + S +++ S A+ AL+ LGY + Sbjct: 120 AQQMILDLSGKFVEASGESATSRKVSSEQ-------NSNLEEAMEALLALGYKATELKKV 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + N Q I+ +L+ + Sbjct: 173 --KAFFEGTND-TVEQYIKSSLKML 194 >gi|317485564|ref|ZP_07944441.1| Holliday junction DNA helicase RuvA [Bilophila wadsworthia 3_1_6] gi|316923244|gb|EFV44453.1| Holliday junction DNA helicase RuvA [Bilophila wadsworthia 3_1_6] Length = 203 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 51/196 (26%), Positives = 90/196 (45%), Gaps = 9/196 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I+G + + + ++ GV Y +Y P +T L + G ++ +R+D Sbjct: 1 MIAYIEGRLAEVCANACVVVTEGGVGYEVYLPQQTRLQLPERGGHVRFYICHIVREDAQE 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF + +RQ F++L S+ VGAR A+G+LS +L ++ + + Q+ GI K Sbjct: 61 LFGFETWDERQTFIVLTSISKVGARTALGILSAFRPDDLRRLVLEDDVLALTQVSGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A I ELK K + + S +A++ L LGY + +A Sbjct: 121 SAQHIFLELKYKLKVEDMPAAASL--------QLGVPGSVYRDALTGLEGLGYAEAEAAP 172 Query: 180 AVVSVLKKEKNIADDS 195 + ++L +E ++ Sbjct: 173 VLKNILHEEPDLEVSE 188 >gi|146317720|ref|YP_001197432.1| Holliday junction DNA helicase RuvA [Streptococcus suis 05ZYH33] gi|146319910|ref|YP_001199621.1| Holliday junction DNA helicase RuvA [Streptococcus suis 98HAH33] gi|253750976|ref|YP_003024117.1| Holliday junction DNA helicase RuvA [Streptococcus suis SC84] gi|253752876|ref|YP_003026016.1| Holliday junction DNA helicase RuvA [Streptococcus suis P1/7] gi|253754701|ref|YP_003027841.1| Holliday junction DNA helicase RuvA [Streptococcus suis BM407] gi|166231447|sp|A4VYN2|RUVA_STRS2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166231449|sp|A4VSE3|RUVA_STRSY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|145688526|gb|ABP89032.1| Holliday junction resolvasome, DNA-binding subunit [Streptococcus suis 05ZYH33] gi|145690716|gb|ABP91221.1| Holliday junction resolvasome, DNA-binding subunit [Streptococcus suis 98HAH33] gi|251815265|emb|CAZ50830.1| Holliday junction DNA helicase RuvA [Streptococcus suis SC84] gi|251817165|emb|CAZ54886.1| Holliday junction DNA helicase RuvA [Streptococcus suis BM407] gi|251819121|emb|CAR44199.1| Holliday junction DNA helicase RuvA [Streptococcus suis P1/7] gi|292557520|gb|ADE30521.1| Holliday junction DNA helicase RuvA [Streptococcus suis GZ1] gi|319757228|gb|ADV69170.1| Holliday junction DNA helicase RuvA [Streptococcus suis JS14] Length = 196 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 91/205 (44%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ QGV YI+ + G++ T++ +R+D L Sbjct: 1 MYDYIKGILTKITAKYIVVETQGVGYILQV-ANPYAYSGQVQQEVTVYTHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++ F+ L SV G+G A+ +++ LV +I +N + + P I K Sbjct: 60 YGFATENEKSVFLSLISVSGIGPTTALAIIAVDDNDGLVRAIEQKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + +Q S A+ A+ LGY + Sbjct: 120 AQQMILDLEGKFV-------MSEEAGPVQQVAPSSENIALEEAMEAMEALGYRPAELKK- 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + A I+ AL+ + Sbjct: 172 IKKFFEGTNDTA--ENYIKSALKML 194 >gi|120403560|ref|YP_953389.1| Holliday junction DNA helicase RuvA [Mycobacterium vanbaalenii PYR-1] gi|166230573|sp|A1T883|RUVA_MYCVP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|119956378|gb|ABM13383.1| DNA recombination protein RuvA, domain I [Mycobacterium vanbaalenii PYR-1] Length = 195 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+V+I+ GV Y + TL+ L + G L +R+D + L Sbjct: 1 MIAAVRGEVLDIALDHVVIEAAGVGYKVMATPATLATL-RRGAEARLITAMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F+ L V G+G +A+G L+ L ++I + + +IP + K Sbjct: 60 YGFADSDARNLFLTLLGVSGIGPSIALGALAMYDGPTLRQAIGDGDVTALTRIPKVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A ++ L+ K + +S + ALV LG+ Q QA A Sbjct: 120 AELLVLTLRDKVGTSTSAGVASAGGHGIRGP-----------VVEALVGLGFAQKQAEEA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 VL E A S +R AL + Sbjct: 169 TDKVLANEPE-ATTSSALRAALSML 192 >gi|320160780|ref|YP_004174004.1| Holliday junction ATP-dependent DNA helicase RuvA [Anaerolinea thermophila UNI-1] gi|319994633|dbj|BAJ63404.1| Holliday junction ATP-dependent DNA helicase RuvA [Anaerolinea thermophila UNI-1] Length = 191 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 108/206 (52%), Gaps = 16/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + L E Y++I V V ++ P TL + G+ LF +R+D + L Sbjct: 1 MIAYVEGKVLELGETYLVIQVGAVGLQVFVP-STLRAKARAGETLVLFTYLVVREDLMAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + L+R++F LL V G+G R+A+ +LS ++ + +I+ + +V++++PG+ K Sbjct: 60 YGFETPLEREFFGLLLGVNGIGPRLAISILSVLSVDAIRRAILSEQPEVLSRVPGVGRKN 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ L+GK + + M+ V+ + AL +LGY +A TA Sbjct: 120 AQKIILSLQGKVTAEGLEGVRPMAEVD-------------QEVLEALTSLGYSVVEAQTA 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V S+ K D + ++LALR S Sbjct: 167 VQSIPKDAP--MDLEERLKLALRYFS 190 >gi|310816584|ref|YP_003964548.1| Holliday junction DNA helicase motor protein [Ketogulonicigenium vulgare Y25] gi|308755319|gb|ADO43248.1| Holliday junction DNA helicase motor protein [Ketogulonicigenium vulgare Y25] Length = 218 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 62/186 (33%), Positives = 98/186 (52%), Gaps = 10/186 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G I D +L+DV+GV YII+ R ++ L +G+ L+ + +R+D ++L Sbjct: 1 MIGWLSGRIIEKSGDQILLDVRGVGYIIHVSDRVMASLPGVGEAVALYTDLLVREDLMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S +++W LL VQGVGA+ A+ ++ + L ++ L + IA+ GI K Sbjct: 61 FGFTSRTEKEWHKLLMGVQGVGAKAALAIMGALGGDGLSRALALGDWSSIAKAKGIGPKT 120 Query: 121 ASRIMTELKGKAI----------SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNL 170 A R++ ELKGKA SL +V++ D + + +A+SAL NL Sbjct: 121 AQRVVMELKGKAPTVMAMSGGAESLDAVIEDDGPAPKPAARRARPVSNAQPDALSALGNL 180 Query: 171 GYGQDQ 176 GY Sbjct: 181 GYSPSD 186 >gi|284048863|ref|YP_003399202.1| Holliday junction DNA helicase RuvA [Acidaminococcus fermentans DSM 20731] gi|283953084|gb|ADB47887.1| Holliday junction DNA helicase RuvA [Acidaminococcus fermentans DSM 20731] Length = 204 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 51/206 (24%), Positives = 98/206 (47%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG I G ++ + ++ L+D QGV Y I+ LS + ++ ++ +R+D ++L Sbjct: 1 MIGFITGRVDHIGTNFCLVDTQGVGYRIFLNTGDLSRI-QVDQKVKIYTYLSVREDALQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLS F L +V G+G +VA G+LS ++ ++ K + ++PGI K Sbjct: 60 FGFLSYDAYSLFTQLITVSGIGPKVAQGILSAAKVDAFYLAVKSRDLKFLTKLPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK ++ ++++ + + + L LGY Q + Sbjct: 120 AERLLLELKD--MTGPEGLEEEGTAGGFDGDVPEDDTTTLGAVAEGLSYLGYTQGEIAQV 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + A +++ ALR ++ Sbjct: 178 LKKLKVTADSRA--EDLLKEALRLLA 201 >gi|22538230|ref|NP_689081.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae 2603V/R] gi|25012088|ref|NP_736483.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae NEM316] gi|76799561|ref|ZP_00781690.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae 18RS21] gi|77414038|ref|ZP_00790209.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae 515] gi|44888490|sp|Q8DWW6|RUVA_STRA5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|44888493|sp|Q8E2R7|RUVA_STRA3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|22535142|gb|AAN00954.1|AE014286_17 Holliday junction DNA helicase RuvA [Streptococcus agalactiae 2603V/R] gi|24413632|emb|CAD47709.1| Unknown [Streptococcus agalactiae NEM316] gi|76585090|gb|EAO61719.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae 18RS21] gi|77159920|gb|EAO71060.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae 515] Length = 196 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 91/205 (44%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + +++++ G+ Y+IY S G + T+++ +R D L Sbjct: 1 MYDYIKGKLSKITAKFIVVETAGLGYMIYV-ANPYSFSGYVNQEVTIYLHQVIRDDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTENEKEIFLNLISVSGIGPTTALAIIAVDDNEGLVSAIDNSDIKYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK + S +++ S A+ AL+ LGY + Sbjct: 120 AQQMILDLSGKFVEASGESATSRKVSSEQ-------NSNLEEAMEALLALGYKATELKKV 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 E Q I+ +L+ + Sbjct: 173 ---KAFFEGTNETVEQYIKSSLKML 194 >gi|331085084|ref|ZP_08334171.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408784|gb|EGG88249.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium 9_1_43BFAA] Length = 200 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 106/205 (51%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + + E+ V+++VQG+ Y I+ P + ++ L IG + ++R+D ++L Sbjct: 1 MISYIKGELAAVGEEQVVVEVQGIGYGIFMPGQAMTMLPPIGSEVKIHTYLNVREDAMQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ D + F LL V G+G + + +LS++T +L +++ + K I+ PGI K Sbjct: 61 FGFLTKDDLKVFRLLIGVNGIGPKGGLNILSKMTPDDLRFAVLAGDVKAISAAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK K + ++ + + A+ ALV LGYG ++ A Sbjct: 121 AEKLIIELKDKL-----NIDDVLTKEEEVMSVPSGGADMQSEAVQALVALGYGSAESLKA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V V ++++ +L+ + Sbjct: 176 VKKV--PMTKTMTVEELLKQSLKFM 198 >gi|76787979|ref|YP_330625.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae A909] gi|77405120|ref|ZP_00782219.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae H36B] gi|77410868|ref|ZP_00787225.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae CJB111] gi|90135931|sp|Q3JYM8|RUVA_STRA1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|76563036|gb|ABA45620.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae A909] gi|77163086|gb|EAO74040.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae CJB111] gi|77176263|gb|EAO79033.1| Holliday junction DNA helicase RuvA [Streptococcus agalactiae H36B] gi|319745991|gb|EFV98273.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus agalactiae ATCC 13813] Length = 196 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 91/205 (44%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + +++++ G+ Y+IY S G + T+++ +R D L Sbjct: 1 MYDYIKGKLSKITAKFIVVETAGLGYVIYV-ANPYSFSGYVNQEVTIYLHQVIRDDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTENEKEIFLNLISVSGIGPTTALAIIAVDDNEGLVSAIDNSDIKYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK + S +++ S A+ AL+ LGY + Sbjct: 120 AQQMILDLSGKFVEASGESATSRKVSSEQ-------NSNLEEAMEALLALGYKATELKKV 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 E Q I+ +L+ + Sbjct: 173 ---KAFFEGTNETVEQYIKSSLKML 194 >gi|212704638|ref|ZP_03312766.1| hypothetical protein DESPIG_02701 [Desulfovibrio piger ATCC 29098] gi|212672037|gb|EEB32520.1| hypothetical protein DESPIG_02701 [Desulfovibrio piger ATCC 29098] Length = 203 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 48/192 (25%), Positives = 88/192 (45%), Gaps = 8/192 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI ++G + + ++ GV Y + P T++ L G+ L+ +R+D + Sbjct: 1 MIAYLEGLLAETWGTSCIVVTRGGVGYELDLPAHTMASLPGRGESVALYTSLVVREDAQQ 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF + +RQ F +L ++ VGAR A+ +LS +L ++ ++ + ++ GI K Sbjct: 61 LFGFATFEERQVFEVLLTISKVGARTALAILSLYRPDDLRRIVLEEDVDALTRVSGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A + ELK K + A S + + L NLGY +D+ Sbjct: 121 TAQHVFLELKYKLK-------VEDVPQAAVLAPNGRPGSVFRDVLDGLSNLGYSEDECAP 173 Query: 180 AVVSVLKKEKNI 191 V ++L +E ++ Sbjct: 174 VVKNILLQEPDL 185 >gi|322377268|ref|ZP_08051760.1| holliday junction DNA helicase RuvA [Streptococcus sp. M334] gi|321281981|gb|EFX58989.1| holliday junction DNA helicase RuvA [Streptococcus sp. M334] Length = 197 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 97/206 (47%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++V G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYEYLKGIITRITAKYIVLEVNGIGYILHV-ANPYAYSGQVNQEAQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNINYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + + ++ + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVVAGDDLPAKVA------VQTSAENQELEEAMEAMLALGYKATE---- 169 Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205 + + K + D I+ AL+ + Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195 >gi|309799338|ref|ZP_07693581.1| holliday junction DNA helicase RuvA [Streptococcus infantis SK1302] gi|308117005|gb|EFO54438.1| holliday junction DNA helicase RuvA [Streptococcus infantis SK1302] Length = 197 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 97/206 (47%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYEYLKGIITKITAKYIVLEANGIGYILHV-ANPYAYSGRVNQEAQIYVHQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + + + + S A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVVAGDDLPTKTAAPS------SSDNQELEEAMEAMLALGYKAAE---- 169 Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205 + + K + +D I+ AL+ + Sbjct: 170 LKKIKKFFEGTSDTAENYIKSALKML 195 >gi|229824009|ref|ZP_04450078.1| hypothetical protein GCWU000282_01313 [Catonella morbi ATCC 51271] gi|229786363|gb|EEP22477.1| hypothetical protein GCWU000282_01313 [Catonella morbi ATCC 51271] Length = 197 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 44/205 (21%), Positives = 86/205 (41%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I+G + + +++I GV Y + C G++ VE +R+D + L Sbjct: 3 MYEFIQGELVQIQPLHLVISANGVGYRLLC-ANPYRWQGELHQQVLCPVELVVREDAMTL 61 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++Q F L V G+G + A+ +L+ L+++I +S + + PG+ K Sbjct: 62 YGFRDQQEKQLFNTLLKVSGIGPKSALSILALDDHVGLIQAIDSGDSTYLTKFPGVGKKT 121 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L G D + QA A+ AL LGY + Sbjct: 122 AQQMILDLSGNL---------DFQAHAQTQASAPVSQQHLEEALEALAGLGYSAKEIKKV 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +E + +++ A + + Sbjct: 173 EKPL--QEAGLNSTQEMLSAAFKLL 195 >gi|219849021|ref|YP_002463454.1| Holliday junction DNA helicase RuvA [Chloroflexus aggregans DSM 9485] gi|254766951|sp|B8GCH4|RUVA_CHLAD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|219543280|gb|ACL25018.1| Holliday junction DNA helicase RuvA [Chloroflexus aggregans DSM 9485] Length = 195 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 61/204 (29%), Positives = 95/204 (46%), Gaps = 13/204 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G I+ + DY++++ G+ ++IY P TLS G +G L +R+D + L Sbjct: 1 MIASIRGVIQSIGNDYLIVETGGIGFLIYAPRSTLSAAGAVGSDIFLHTILIVREDALTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + R F L V GVG ++A+ +LS T E+ I + +A++PGI K Sbjct: 61 YGFSDNAQRSLFEQLIGVSGVGPKLALSLLSSGTPDEVRSMIAGGDVARLARVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL+GK S + LV+LGY +A A Sbjct: 121 AERIVLELRGKIDFRQLAASGSTSV-----------SALDRELSEILVSLGYSAAEAAAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + S+ + +RLALR Sbjct: 170 IASLPSDAPP--TLEERLRLALRY 191 >gi|114704960|ref|ZP_01437868.1| Holliday junction DNA helicase motor protein [Fulvimarina pelagi HTCC2506] gi|114539745|gb|EAU42865.1| Holliday junction DNA helicase motor protein [Fulvimarina pelagi HTCC2506] Length = 206 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 84/206 (40%), Positives = 137/206 (66%), Gaps = 1/206 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG +E + ED+V++DV GV Y+ +C RTL+ L +G+ LF+ET +R+D IRL Sbjct: 1 MIGKLKGTVEEIGEDHVVVDVHGVGYVAFCGARTLAGLSGVGEAIVLFIETIVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R WF LLQ+VQGVG++VA+ V+ +++ +L ++ LQ+ ++A+ PG+ K+ Sbjct: 61 YGFATAAERDWFRLLQTVQGVGSKVALAVIGTLSSGDLANAVALQDKAMVARTPGVGPKV 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK +A + S ++ + K + + +A+SAL NLGY +DQA TA Sbjct: 121 AQRIVAELKDRAPAFSGAGSEESFGL-KRDIGGGTASAPVADAVSALTNLGYPRDQAATA 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + ++ AD +++IRL L+A+S Sbjct: 180 VATAVRDAGEDADSAKLIRLGLKALS 205 >gi|307708034|ref|ZP_07644503.1| holliday junction DNA helicase RuvA [Streptococcus mitis NCTC 12261] gi|307615924|gb|EFN95128.1| holliday junction DNA helicase RuvA [Streptococcus mitis NCTC 12261] Length = 197 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 96/206 (46%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++V G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYEYLKGIITKITAKYIVLEVNGIGYILHV-ANPYAYSGQVNQEAQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + ++ + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVVAGDDFPAKVA------VQASAENQELEEAMEAMLALGYKATE---- 169 Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205 + + K + D I+ AL+ + Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195 >gi|313837773|gb|EFS75487.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes HL037PA2] gi|314927345|gb|EFS91176.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes HL044PA1] gi|314972425|gb|EFT16522.1| Holliday junction DNA helicase RuvA [Propionibacterium acnes HL037PA3] gi|328907430|gb|EGG27196.1| holliday junction DNA helicase RuvA [Propionibacterium sp. P08] Length = 201 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 53/208 (25%), Positives = 97/208 (46%), Gaps = 10/208 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + +V++D GV + CP T + +I +L +R+D + L Sbjct: 1 MISHLSGKVNAAGLTWVVLDNCGVGIKVLCPPATAAS-ARIDQDMSLQTSLIVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ DR F L+Q+ GVG ++A ++S + A +L +I ++ + ++PGI K Sbjct: 60 YGFVEADDRDAFELVQTASGVGPKLAAAIMSVLDAAQLATAIANEDDATLCRVPGIGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A++++ ELK K + + + S+ LV LG+ A A Sbjct: 120 AAKMILELKDKMAAFAPRGSSSSGAAH-------VAASWREQVAEGLVGLGWPTKDAEKA 172 Query: 181 VVSV--LKKEKNIADDSQIIRLALRAIS 206 V V L++ ++R ALR+++ Sbjct: 173 VDEVAALREADPTMTIGSLMRAALRSLA 200 >gi|322388581|ref|ZP_08062181.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus infantis ATCC 700779] gi|321140501|gb|EFX36006.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus infantis ATCC 700779] Length = 197 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 97/206 (47%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYEYLKGIITKITAKYIVLEANGIGYILHV-ANPYAYSGQVNQEAQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + + + + S A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVVAGDDLPAKTAAPS------SSDNQELEEAMEAMLALGYKATE---- 169 Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205 + + K + +D I+ AL+ + Sbjct: 170 LKKIKKFFEGTSDTAENYIKSALKML 195 >gi|317128202|ref|YP_004094484.1| Holliday junction DNA helicase RuvA [Bacillus cellulosilyticus DSM 2522] gi|315473150|gb|ADU29753.1| Holliday junction DNA helicase RuvA [Bacillus cellulosilyticus DSM 2522] Length = 204 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 96/205 (46%), Gaps = 4/205 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + + V ++V V Y+++C I + T++ H+R+D I+L Sbjct: 1 MIESLTGVVSNIEIESVTLNVHDVGYLVFC-ANPFRYEENINEKVTIYTYQHVREDAIKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F L V G+G + A+ +L+ T +V++I +N K + + PG+ K Sbjct: 60 YGFKNRDERKLFEKLLQVSGIGPKGALAILATGEPTLVVQAIEAENEKFLVKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + + + + + A+ AL LGY + Sbjct: 120 ARQIILDLKGKLVDFLQESGGEDTKLIAIDDDMQLENYELEEALEALKALGYVDREINKV 179 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + I++AL+ + Sbjct: 180 LPKL---KDTKETTDGYIKIALKLM 201 >gi|167766364|ref|ZP_02438417.1| hypothetical protein CLOSS21_00868 [Clostridium sp. SS2/1] gi|167711955|gb|EDS22534.1| hypothetical protein CLOSS21_00868 [Clostridium sp. SS2/1] Length = 190 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 58/193 (30%), Positives = 99/193 (51%), Gaps = 6/193 (3%) Query: 13 YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWF 72 V++D G+ Y + P+R KIG ++ H+R+D + LFGFLS +++ F Sbjct: 2 SPGMVVVDNHGIGYQMMVPMRG-ESFPKIGQEIKIYTHMHVREDDVSLFGFLSKEEKEAF 60 Query: 73 MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132 LL V G+G +V + VLS ++ EL ++I ++ K I++ PG+ K A +++ ELK K Sbjct: 61 ELLIGVNGIGPKVGLSVLSTLSVYELKMAVISEDVKTISKTPGLGPKGAKKLILELKDKL 120 Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIA 192 +++D S S I I LV+LGY + +A AV V ++ Sbjct: 121 S--FEELEEDGVGAEIFDTSADSSDSVMI-TIEGLVSLGYSKSEAAIAVNKV--EDAKDL 175 Query: 193 DDSQIIRLALRAI 205 ++++ AL+ I Sbjct: 176 TPEELLKKALKNI 188 >gi|323489997|ref|ZP_08095218.1| Holliday junction ATP-dependent DNA helicase ruvA [Planococcus donghaensis MPA1U2] gi|323396293|gb|EGA89118.1| Holliday junction ATP-dependent DNA helicase ruvA [Planococcus donghaensis MPA1U2] Length = 198 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 94/205 (45%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + +Y++I+ QG+ + I+ P S + +F+ H+R+D L Sbjct: 1 MYDYIKGTVTRVTPEYLVIEQQGIGWQIFAP-NPYSF---GTEDLQVFLHHHVREDAQLL 56 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + R+ F L SV G+G + A+ +L+ ++E+I +N + + PG+ K Sbjct: 57 FGFPTFEQRELFRKLISVSGIGPKGALAILASGQPQHVIEAIEQENESYLVKFPGVGKKT 116 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK D V + + A+ AL LGY + + Sbjct: 117 ARQMILDLKGKLTEFFG----DSLGVEDTSNLLSNDQLELEEAMLALGALGYSEREINK- 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V L+ D ++ AL+ + Sbjct: 172 VKPQLRDL--DLDTEGFMKKALQLL 194 >gi|309789628|ref|ZP_07684209.1| Holliday junction DNA helicase RuvA [Oscillochloris trichoides DG6] gi|308228364|gb|EFO82011.1| Holliday junction DNA helicase RuvA [Oscillochloris trichoides DG6] Length = 198 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 10/204 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+++I+ GV +++Y P L G + + L+ +R+D + L Sbjct: 1 MIASLRGTLIHIGSDHLVIETGGVGWLVYAPRSVLGACGALNETIFLYTHMIVREDALLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + R F L SV GVG +V + +LS + ++ + N+ +A++PGI K Sbjct: 61 YGFQTLEQRALFESLLSVSGVGPKVGLSLLSAGSPDDIRLMVAQNNTTALARVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK + + LV+LGY +A+ A Sbjct: 121 AERLVLELKGKLDLKGLPTAA--------GGVAAAPSALNAELAELLVSLGYSSAEASAA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 V S+ D +RLALR Sbjct: 173 VASLPADAPE--DLEVRLRLALRY 194 >gi|146328995|ref|YP_001210061.1| holliday junction DNA helicase RuvA [Dichelobacter nodosus VCS1703A] gi|166230547|sp|A5EXH7|RUVA_DICNV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|146232465|gb|ABQ13443.1| holliday junction DNA helicase RuvA [Dichelobacter nodosus VCS1703A] Length = 204 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 56/201 (27%), Positives = 94/201 (46%), Gaps = 6/201 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + D +LI+V GV Y + P ++ ++G+ T+FV R+D L Sbjct: 1 MIGWLQGRVLYKQNDQLLINVCGVGYELTVPQSVMAS-AQVGEELTVFVHHVQREDGQFL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S L RQ F L V G+G ++++ +LS +T L+ ++ Q S ++ GI K Sbjct: 60 YGFSSFLQRQLFRELIRVSGIGPKLSIVILSGLTPEALIAAVRAQESAPFLRLSGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL + + + + S + AI AL+ L +A Sbjct: 120 AERLLIELHDRVEKNDLFLCDESES-----SRAPIALSASEEAIQALIALELAPAEAELW 174 Query: 181 VVSVLKKEKNIADDSQIIRLA 201 V K AD + +I+ A Sbjct: 175 VKKAQKTLAEDADSAALIKTA 195 >gi|317500339|ref|ZP_07958564.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium 8_1_57FAA] gi|316898280|gb|EFV20326.1| Holliday junction DNA helicase RuvA [Lachnospiraceae bacterium 8_1_57FAA] Length = 184 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 49/185 (26%), Positives = 89/185 (48%), Gaps = 4/185 (2%) Query: 22 QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGV 81 G+ Y ++ P + L+ L +G+ L+ ++R+D ++LFGFL+ D + F L+ V G+ Sbjct: 2 GGIGYGVFMPHQALAMLPSVGNEVKLYTYLNVREDAMQLFGFLTKDDLEIFRLVIGVSGI 61 Query: 82 GARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAI-SLSSVVQ 140 G + + +LS ++ EL +I+ ++K+I+ PGI K A +++ EL+ K Sbjct: 62 GPKGGLNILSCMSPDELRFAIMSGDAKMISSAPGIGKKTAEKLIVELRDKVDIEKMLDHA 121 Query: 141 QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRL 200 + S A+ ALV LGYG ++ AV I++ Sbjct: 122 AHPEETIQTDMAKTSANEMQSEAVQALVALGYGSAESLRAVKK---TSVQCQTVEDILKE 178 Query: 201 ALRAI 205 AL+ + Sbjct: 179 ALQYL 183 >gi|220904537|ref|YP_002479849.1| Holliday junction DNA helicase RuvA [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868836|gb|ACL49171.1| Holliday junction DNA helicase RuvA [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 204 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 53/192 (27%), Positives = 89/192 (46%), Gaps = 7/192 (3%) Query: 1 MIGKIKGNIEGLYEDY-VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI ++G + + + +LI GV Y + P TLS L G+ L+ +R+D + Sbjct: 1 MIAYLEGRLAETWGNTCLLITENGVGYAVALPAHTLSVLPGRGEHLALYTSLAVREDALE 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF + +RQ F +L S+ VGAR A+ +LS +L + ++ + ++ GI K Sbjct: 61 LFGFATFEERQTFEVLISISKVGARTALSILSIYRPEDLRRIVFEEDVMALTRVSGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A + ELK K D+ + S + + L NLGY +D+ Sbjct: 121 TAQHVFLELKYKLK------VDDVPQAAVLASTGERPGSVFRDVLDGLANLGYAEDECAP 174 Query: 180 AVVSVLKKEKNI 191 V +L +E ++ Sbjct: 175 MVKKLLHEEPDL 186 >gi|218441378|ref|YP_002379707.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 7424] gi|226725437|sp|B7K970|RUVA_CYAP7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|218174106|gb|ACK72839.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 7424] Length = 209 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 45/214 (21%), Positives = 92/214 (42%), Gaps = 13/214 (6%) Query: 1 MIGKIKGNIEGL-----YEDYVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMR 54 MI +KG + + ++++V + Y I P R L + +F +R Sbjct: 1 MINYLKGKTTQILKTPSNRNILILEVNHIGYEIQIPSRLARNLSLEEDQIVQIFTHLQIR 60 Query: 55 QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114 +DQ L+GF +D +R F L ++ GVG + A+ ++ + L+ +I+ + K +++ P Sbjct: 61 EDQQILYGFSTDSERDLFRQLININGVGTQTAIALIDTLGIEALINAIVTNDVKTLSKTP 120 Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 G+ K A RI ELK K + + + L+ LGY Sbjct: 121 GVGPKTAERIALELKSKLSQWEQAI-----ALKTPVSVGVPSREILEEVEMTLLALGYTD 175 Query: 175 DQATTAVVSVLKKEKNIAD--DSQIIRLALRAIS 206 ++ A+ ++ + + + + ++ A+ +S Sbjct: 176 EEIDQAISAISQDNLLLKNPHVEEWLKSAIAWLS 209 >gi|171778535|ref|ZP_02919662.1| hypothetical protein STRINF_00514 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282758|gb|EDT48182.1| hypothetical protein STRINF_00514 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 197 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 89/205 (43%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++I+V G+ YI+ S + +++ +R+D L Sbjct: 1 MYDYIKGKLTKITAKYIVIEVGGLGYIVNV-ANPYSFSDLMNQDIQVYLHQVIREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTEDEKAVFLNLISVSGIGPTTALAIIAVDDNEGLVNAIDTSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK + +S K + A+ AL+ LGY + Sbjct: 120 AQQMVLDLAGKFVDVSVENG-------KVSQTKAAANEQLEEAMEALLALGYKAAELKK- 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + E Q I+ +L+ + Sbjct: 172 IRKFF--EGTNETAEQYIKSSLKML 194 >gi|269216143|ref|ZP_06159997.1| holliday junction DNA helicase RuvA [Slackia exigua ATCC 700122] gi|269130402|gb|EEZ61480.1| holliday junction DNA helicase RuvA [Slackia exigua ATCC 700122] Length = 196 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 95/205 (46%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + G + +DV GV + + LS L G+ + +R+D + L Sbjct: 1 MIAFLNGVVAGKNQSTAFVDVGGVGFAVGMSANDLSRLPPTGERVLIHTYFAVREDAMTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS + F L V VG ++A+ LS A+E + +++ ++ ++++PGI K+ Sbjct: 61 YGFLSLESKSLFEKLIGVSSVGPKIALAALSTFKASEFIAAVLSGDAAAVSKVPGIGKKM 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELKG D S + + A AL+ +G+ +A A Sbjct: 121 AQRIILELKGSL--------ADASVDDLFSTKAGEQAARLQGAKEALLAMGFTSAEADVA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + DS +++ ALR + Sbjct: 173 LKDAPET---LVTDSALLQYALRRL 194 >gi|258645438|ref|ZP_05732907.1| holliday junction DNA helicase RuvA [Dialister invisus DSM 15470] gi|260402789|gb|EEW96336.1| holliday junction DNA helicase RuvA [Dialister invisus DSM 15470] Length = 201 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 97/204 (47%), Gaps = 7/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG IKG + +++ I+ G+ Y ++ + + +G L +R+D I L Sbjct: 1 MIGYIKGKATVVSKEFCFIEAGGIGYRVFISEMSRQKI-HLGAPVRLLTYMAVREDAILL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ + F++L SV +G +VAMG+LS + + V SI +N V+ ++PG+ K Sbjct: 60 YGFLTQEEYDLFLILISVSKIGPKVAMGILSVMEPADFVLSIRNRNLSVLTKLPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + + D+ A A +A L LGY + Sbjct: 120 AERLLVELKDKVGDFA---EGDIDEPESLAAGKPDESGIAADAAKYLRALGYEDTEIQPV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + + + K D S ++ ALR Sbjct: 177 LKKLSIEYK---DVSPLVSAALRE 197 >gi|326382127|ref|ZP_08203819.1| Holliday junction DNA helicase RuvA [Gordonia neofelifaecis NRRL B-59395] gi|326198857|gb|EGD56039.1| Holliday junction DNA helicase RuvA [Gordonia neofelifaecis NRRL B-59395] Length = 201 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 92/204 (45%), Gaps = 12/204 (5%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 I + G + + D+ +++ GV Y + TL L K G L +R+D + L+ Sbjct: 6 IASVSGEVIDIALDHAVVECAGVGYKVLATPPTLGSL-KRGGHVRLLTSMMVREDSMTLY 64 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF R F LLQ+V GVG R+AM L+ + L ++ ++K + +PGI ++A Sbjct: 65 GFTDPEARDLFGLLQTVTGVGPRLAMATLAVLEPDSLRRALAESDAKALTTVPGIGKRVA 124 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 R++ EL+ K + ALV LG+ + A AV Sbjct: 125 ERLVVELRDKV----------TAGSAGAVPGAPVAAGAGAQVTEALVGLGFTEGAAQKAV 174 Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205 +VL + AD S ++R AL A+ Sbjct: 175 AAVLADDP-GADSSSLLRSALTAL 197 >gi|322392518|ref|ZP_08065978.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus peroris ATCC 700780] gi|321144510|gb|EFX39911.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus peroris ATCC 700780] Length = 197 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 96/206 (46%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYEYLKGIITKITAKYIVLEANGIGYILHV-ANPYAYSGQVNQEAQIYVHQVVREDVHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKRLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + + + + S A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVVAGDDLPAKTAAPS------SSDNQELEEAMEAMLALGYKATE---- 169 Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205 + + K + D I+ AL+ + Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195 >gi|255994147|ref|ZP_05427282.1| holliday junction DNA helicase RuvA [Eubacterium saphenum ATCC 49989] gi|255993815|gb|EEU03904.1| holliday junction DNA helicase RuvA [Eubacterium saphenum ATCC 49989] Length = 194 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 95/205 (46%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G I E +++D + Y I P+ + +I + ++ E +R+D + L Sbjct: 1 MIKFLRGRIFEKLESCIVLDTGNIGYQINLPLNSPFFTAEISEEVLVYTELIVREDDMSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +F LL ++ GVGA+ ++ +LS T EL +I +++ I++ GI K Sbjct: 61 YGFEDFKTLNFFNLLMNINGVGAKASLALLSVSTVDELARAIASKDTAFISRANGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI EL K S++ + + A AL++LGY +++A Sbjct: 121 AERIALELSDKVESIAYNLPS-------NNEVTSVVSGNKAEACEALMSLGYNKNEAM-- 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 +VLK D IR AL + Sbjct: 172 --NVLKSLDEGLDTQSYIRKALTLL 194 >gi|306834544|ref|ZP_07467657.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus bovis ATCC 700338] gi|304423346|gb|EFM26499.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus bovis ATCC 700338] Length = 197 Score = 135 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 88/205 (42%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++I+ G+ YI+ S + +++ +R+D L Sbjct: 1 MYDYIKGKLTKITAKYIVIEAGGLGYIVNV-ANPYSFSDLVNQEVQIYLHQVIREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTEDEKAVFLNLISVSGIGPTTALAIIAVDDNEGLVNAIDTSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK + +S + + A+ AL+ LGY + Sbjct: 120 AQQMVLDLAGKFVDVSVENGKAS-------QTKTATNEQLEEAMEALLALGYKAAELKK- 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + E Q I+ +L+ + Sbjct: 172 IRKFF--EGTNETAEQYIKSSLKML 194 >gi|256545112|ref|ZP_05472478.1| Holliday junction DNA helicase RuvA [Anaerococcus vaginalis ATCC 51170] gi|256399153|gb|EEU12764.1| Holliday junction DNA helicase RuvA [Anaerococcus vaginalis ATCC 51170] Length = 199 Score = 135 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 100/205 (48%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G I+ + ED +I+ + Y I T+ L +I + +F + ++R+D I L Sbjct: 1 MISYIIGEIKYIGEDNFVIENNNIGYFINSSFNTIKTL-EINNEFKIFTKMNVREDDISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S + + F LL SV +G + A+ +LS + ++ +I+ + + + GI K Sbjct: 60 FGFSSKDELEVFELLTSVSTIGPKNAIAILSTLNVDKIKLAIVNNDIDTLTKAKGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ EL K ++ D ++ + + A AL+NLGY ++ Sbjct: 120 ASRIILELVDKVKKMAI---NDDISISNQDFDNITSNGEIEVAREALLNLGYQRNSIDKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + S+ + + +II+ +L+ + Sbjct: 177 LSSL---KDSDLSLEEIIKESLKRM 198 >gi|256391548|ref|YP_003113112.1| Holliday junction DNA helicase RuvA [Catenulispora acidiphila DSM 44928] gi|256357774|gb|ACU71271.1| Holliday junction DNA helicase RuvA [Catenulispora acidiphila DSM 44928] Length = 208 Score = 135 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 55/211 (26%), Positives = 98/211 (46%), Gaps = 11/211 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + +++V GV +++C TL+ L +G+ LF +R+D + L Sbjct: 1 MIAFVSGPVAAVTPTSAVVEVGGVGMLVHCGPGTLAAL-AVGEKAKLFTALVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +D +R F LLQ+ G+G +VA +LS L + + + Q+PGI K Sbjct: 60 YGFATDDERTVFELLQTASGIGPKVAQAMLSVHAPDTLRTIFMTGDEAALTQVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + V + S+ + + AL LG+ +A A Sbjct: 120 AQRLLLELKERLGPPTGAVPGQAHNGWSRAG----LGSWRVQLLEALTGLGWTAREADDA 175 Query: 181 VVSV----LKKEKNIADDS--QIIRLALRAI 205 V +V ++E +++ ALR + Sbjct: 176 VSAVGPLAAEQEAAGQTVQLGPLLKAALRTM 206 >gi|186683711|ref|YP_001866907.1| Holliday junction DNA helicase RuvA [Nostoc punctiforme PCC 73102] gi|186466163|gb|ACC81964.1| Holliday junction DNA helicase RuvA [Nostoc punctiforme PCC 73102] Length = 228 Score = 135 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 57/213 (26%), Positives = 96/213 (45%), Gaps = 14/213 (6%) Query: 1 MIGKIKGNIEGL---YEDYVLI--DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55 MI +KG + G+ + V++ +V G+ Y + P R + L + G +F +R+ Sbjct: 19 MISYLKGIVAGIQTIGANRVILTLEVNGLGYDLQVPQRLANQLPESGGVAQIFTHFQIRE 78 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 + L+GF S +R F L +V G+GA +A+ +L + +LV++II N++++ Q PG Sbjct: 79 EVPYLYGFASPAERDLFRHLLTVTGIGAALAIALLDTLELPDLVQAIIAGNTQILIQAPG 138 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 + KIA RI ELK K + A P L LGY Sbjct: 139 VGKKIAERICLELKSKLVEWR-------KSAGFFVATGGPAPGILEEVQMTLFALGYTAH 191 Query: 176 QATTAVVSVLKK--EKNIADDSQIIRLALRAIS 206 + + A+ V + A I+ A+ +S Sbjct: 192 EVSHALHVVSEDIGLPKDAYVEDWIKQAIAHLS 224 >gi|226355827|ref|YP_002785567.1| Holliday junction DNA helicase RuvA [Deinococcus deserti VCD115] gi|226317817|gb|ACO45813.1| putative Holliday junction ATP-dependent DNA helicase ruvA [Deinococcus deserti VCD115] Length = 202 Score = 135 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 49/204 (24%), Positives = 88/204 (43%), Gaps = 7/204 (3%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 I + G + + E+ +I GV Y + CP TL L +G L +R+D LF Sbjct: 5 IAYLSGVVREVRENSAVIVAGGVGYEVQCPAGTLGKLV-VGQNAELSTRFVVREDAQLLF 63 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF + F L+ V GVG ++ + +LS + + L + ++ + K+++ + G+ K A Sbjct: 64 GFSDADSLKLFDLVTGVSGVGPKLGLSLLSAMPVSALAQGLMAGDVKLLSSVSGVGKKTA 123 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 R++ EL+ K + + +AI AL+ LG+ + Q V Sbjct: 124 ERLVLELQNKVPEHLAAAGVPAGTRAT-----PVSSTAGRDAIEALLALGFREAQVRGVV 178 Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205 +L + +IR L + Sbjct: 179 AELLGADP-TQSADALIRKGLGRL 201 >gi|300362258|ref|ZP_07058434.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus gasseri JV-V03] gi|300353249|gb|EFJ69121.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus gasseri JV-V03] Length = 192 Score = 135 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 94/205 (45%), Gaps = 16/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + + YV++DV G+ Y I CP T++VE +R I L Sbjct: 1 MFEYLKGIVAKIDPAYVVLDVNGIGYKILCPTPYSYQ---ENQPATIYVEQVVRDTGITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS D++ F+ L SV G+G + A+ +++ L +I K + + PG+ K Sbjct: 58 YGFLSLEDKELFLKLLSVSGIGPKSAVAIMAAEDTDSLASAIQNGEVKYLTRFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK K+ + +A+ ALV LGY Q + Sbjct: 118 ASQIVLDLKGKLGDY-----------VKKSTVAADLSPSLQDAVLALVALGYTQKEVDRI 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + K +N AD I+ AL + Sbjct: 167 TPKLAKLPENTADG--YIKEALALL 189 >gi|307705927|ref|ZP_07642764.1| holliday junction DNA helicase RuvA [Streptococcus mitis SK597] gi|307620523|gb|EFN99622.1| holliday junction DNA helicase RuvA [Streptococcus mitis SK597] Length = 197 Score = 135 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 97/206 (47%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++V G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYEYLKGIITKITAKYIVLEVNGIGYILHV-ANPYAYSGQVNQEAQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + + ++ + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVVAGDDLPVKVA------VKASAENQELEEAMEAMLALGYKATE---- 169 Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205 + + K + D I+ AL+ + Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195 >gi|303328183|ref|ZP_07358621.1| holliday junction DNA helicase RuvA [Desulfovibrio sp. 3_1_syn3] gi|302861513|gb|EFL84449.1| holliday junction DNA helicase RuvA [Desulfovibrio sp. 3_1_syn3] Length = 203 Score = 135 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 51/192 (26%), Positives = 88/192 (45%), Gaps = 8/192 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI ++G + + + LI GV Y + P TL+ L G+ L+ +R+D + Sbjct: 1 MIAYLEGRLAETWGNACLIVTEGGVGYEVALPAHTLAALPDRGEQLALYTSLAVREDALE 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF S +RQ F +L S+ VGAR A+ +LS +L ++ + + ++ GI K Sbjct: 61 LFGFASFEERQTFEVLVSISKVGARTALAILSIFRPDDLRRLVLEDDVLALTRVSGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A + ELK K ++ + S + + L NLGY +++ Sbjct: 121 TAQHVFLELKYKLKVEDVPQAAVLAASGR-------PGSVFRDVLDGLANLGYAEEECAP 173 Query: 180 AVVSVLKKEKNI 191 V +L +E ++ Sbjct: 174 LVKKILHEEPDL 185 >gi|88602182|ref|YP_502360.1| Holliday junction DNA helicase RuvA [Methanospirillum hungatei JF-1] gi|88187644|gb|ABD40641.1| Holliday junction DNA helicase subunit RuvA [Methanospirillum hungatei JF-1] Length = 195 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 56/202 (27%), Positives = 105/202 (51%), Gaps = 13/202 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +I+G + G V+++ G+ Y I P L+ + K D L+ E +RQD ++L Sbjct: 1 MIARIRGLVIGYETGSVIVEAGGIGYRIRVPESVLTSITK-DDEIILYTELIIRQDLMQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + + F LL SV +G + + ++SR++ E+ ++I + ++++Q+ G+ K Sbjct: 60 YGFYTPEETEMFRLLISVSHIGPQTGLAIISRLSLPEICDAISSKKPEILSQVQGLGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL+ K L Q + K Q +A+ AL++LGY +++A A Sbjct: 120 AERIILELQKKVSELKIQYPQTPTSSTKIQ-----------DAVLALLSLGYSREEAMGA 168 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 + + S+++R AL Sbjct: 169 LER-SALDTETVSSSELVREAL 189 >gi|269925207|ref|YP_003321830.1| Holliday junction DNA helicase RuvA [Thermobaculum terrenum ATCC BAA-798] gi|269788867|gb|ACZ41008.1| Holliday junction DNA helicase RuvA [Thermobaculum terrenum ATCC BAA-798] Length = 192 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 99/206 (48%), Gaps = 16/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG+IE D +++ V GV ++ P + +G+IGD L +R+D + L Sbjct: 1 MIASIKGHIEYKLNDGLIVQVGGVGLRVFTPSSMVREIGEIGDEVYLHTHLMVREDALTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + F LL SV GVG A+ +LS + E+ +I +N++ + IP I K+ Sbjct: 61 YGFSTREQLRLFELLISVTGVGPNHALNILSSASVEEIQTAIAQENAQFFSLIPRIGKKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ ELKGK VQ + +SAL+ LGY +A A Sbjct: 121 AARIILELKGKVEPSGEAVQ--------------IISHKDEELVSALLALGYTLGEAQAA 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V S+ + +RLAL S Sbjct: 167 VRSLPTD--KELPMEEKLRLALSYFS 190 >gi|315612298|ref|ZP_07887212.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis ATCC 49296] gi|315315691|gb|EFU63729.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis ATCC 49296] Length = 197 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 46/206 (22%), Positives = 98/206 (47%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++V G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYEYLKGIITKITAKYIVLEVNGIGYILHV-ANPYAYSGQVNQETQIYVHQVVREDTHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + S + ++ + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVVASDDLPAKVA------VQTSAENQELEEAMEAMLALGYKATE---- 169 Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205 + + K + D I+ AL+ + Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195 >gi|116629085|ref|YP_814257.1| Holliday junction resolvasome, DNA-binding subunit [Lactobacillus gasseri ATCC 33323] gi|238853828|ref|ZP_04644193.1| holliday junction DNA helicase RuvA [Lactobacillus gasseri 202-4] gi|311111127|ref|ZP_07712524.1| holliday junction DNA helicase RuvA [Lactobacillus gasseri MV-22] gi|122273917|sp|Q045Q3|RUVA_LACGA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|116094667|gb|ABJ59819.1| Holliday junction DNA helicase subunit RuvA [Lactobacillus gasseri ATCC 33323] gi|238833523|gb|EEQ25795.1| holliday junction DNA helicase RuvA [Lactobacillus gasseri 202-4] gi|311066281|gb|EFQ46621.1| holliday junction DNA helicase RuvA [Lactobacillus gasseri MV-22] Length = 192 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 95/205 (46%), Gaps = 16/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + + YV++DV G+ Y I CP T++VE +R I L Sbjct: 1 MFEYLKGIVAKIDPAYVVLDVNGIGYKILCPTPYSYQ---ENQPATIYVEQVVRDTGITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS D++ F+ L SV G+G + A+ +++ L +I K + + PG+ K Sbjct: 58 YGFLSLEDKELFLKLLSVSGIGPKSAVAIMAAEDTDSLASAIQNGEVKYLTRFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK K+ A + +A+ ALV LGY Q + Sbjct: 118 ASQIVLDLKGKLGDY-----------VKKSAVATDLTPSLQDALLALVALGYTQKEVDRI 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + K +N AD I+ AL + Sbjct: 167 TPKLAKLPENTADG--YIKEALALL 189 >gi|319892695|ref|YP_004149570.1| Holliday junction DNA helicase RuvA [Staphylococcus pseudintermedius HKU10-03] gi|317162391|gb|ADV05934.1| Holliday junction DNA helicase RuvA [Staphylococcus pseudintermedius HKU10-03] Length = 199 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 95/206 (46%), Gaps = 10/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 M I G + L+ +++++ G+ Y I P + + ++ +R+D Sbjct: 1 MYAYISGKLTALHPTHIIVETTSGIGYEIQTP-NSYRFQKNLDQTVKVYTSLIVREDAQL 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF+ ++ F+ L V G+G + A+ +L+ + E+ +I +N + Q PGI K Sbjct: 60 LYGFIDQEEKDMFLSLIKVTGIGPKSALAILAASSPNEVKRAIENENDAYLTQFPGIGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I+ +LKGK + V + + +++ A+ AL LGY + + Sbjct: 120 TARQIVLDLKGKVVVTEEVSEGLLDIATEQE------DLAVQEALLALEALGYSKRELKK 173 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 V ++++ +D + ++ L+ + Sbjct: 174 -VEKAMQQQI-FSDVDEAVKYGLKQL 197 >gi|327398312|ref|YP_004339181.1| Holliday junction ATP-dependent DNA helicase ruvA [Hippea maritima DSM 10411] gi|327180941|gb|AEA33122.1| Holliday junction ATP-dependent DNA helicase ruvA [Hippea maritima DSM 10411] Length = 189 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 96/205 (46%), Gaps = 20/205 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ ++G + +IDV G+ I P+ T + L +IG+ CTL E + + ++L Sbjct: 1 MLEAVRGTLVDKTNLKAVIDVNGLMLDISIPLSTFNKLPEIGEECTLLCELVIGEKSLKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F L+ + +GA+ A+ +LS I+ + +I QN +++ +IPGI K Sbjct: 61 YGFSTKEEKNLFNSLRKISKIGAQTAISILSNISIEQFYRAIEEQNKELLTKIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A I+ E K P +AI+ L LG+ Q A+ Sbjct: 121 AISIIVEFSSKIPK-------------------TDNPPIVDDAITTLQGLGFSQSDASKI 161 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + + + NI +I+ +L+ I Sbjct: 162 VNEIYRNKPNI-TIEDLIKESLKNI 185 >gi|239932397|ref|ZP_04689350.1| Holliday junction DNA helicase RuvA [Streptomyces ghanaensis ATCC 14672] gi|291440764|ref|ZP_06580154.1| holliday junction DNA helicase [Streptomyces ghanaensis ATCC 14672] gi|291343659|gb|EFE70615.1| holliday junction DNA helicase [Streptomyces ghanaensis ATCC 14672] Length = 201 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 56/209 (26%), Positives = 94/209 (44%), Gaps = 14/209 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L D +++V GV + C TLS L ++G L +R+D + L Sbjct: 1 MIAFVSGTVAALAPDTAVVEVGGVGMAVQCTPNTLSTL-RVGRPAKLHTSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ T L ++ + K + +PGI K Sbjct: 60 YGFADDDERQVFELLQTASGVGPRLAQAMLAVHTPDALRRAVATADEKALTAVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD---QA 177 A +++ ELK + V A + + +AL+ LGY +A Sbjct: 120 AQKLLLELKDRLGE----------PVGAPAAGAPAAAGWRDQLHAALIGLGYATREADEA 169 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 AV + +++ AL+ ++ Sbjct: 170 VAAVAPQAEAAGGTPRVGPLLKAALQTLN 198 >gi|227518048|ref|ZP_03948097.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0104] gi|227074484|gb|EEI12447.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0104] Length = 223 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 46/206 (22%), Positives = 89/206 (43%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + Y++++ G+ Y I GK+ L++ +R+D L Sbjct: 20 MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 78 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMK 119 FGF S ++Q F+ L SV G+G + + +++ + L+ +I ++ + + PG+ K Sbjct: 79 FGFGSLDEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 138 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +++ +LKGK L S + E + + A+ AL LGY + Sbjct: 139 TAQQMILDLKGKLGELESSEAAVAAMTATEA--VTTSNQALAEALEALSALGYSDREIKR 196 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + + D + AL+ + Sbjct: 197 ITKQLEALGETTTDV--YLSNALKFM 220 >gi|288906381|ref|YP_003431603.1| Holliday junction DNA helicase [Streptococcus gallolyticus UCN34] gi|306832428|ref|ZP_07465581.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325979395|ref|YP_004289111.1| Holliday junction ATP-dependent DNA helicase ruvA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288733107|emb|CBI14688.1| Holliday junction DNA helicase [Streptococcus gallolyticus UCN34] gi|304425468|gb|EFM28587.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325179323|emb|CBZ49367.1| Holliday junction ATP-dependent DNA helicase ruvA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 197 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 44/205 (21%), Positives = 88/205 (42%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ YI+ S + +++ +R+D L Sbjct: 1 MYDYIKGKLTKITAKYIVVEAGGLGYIVNV-ANPYSFSDLVNQEVQIYLHQVIREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ ++ F+ L SV G+G A+ +++ LV +I + K + + P I K Sbjct: 60 FGFHTEDEKAVFLNLISVSGIGPTTALAIIAVDDNEGLVNAIDTSDIKYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK + +S + + A+ AL+ LGY + Sbjct: 120 AQQMVLDLAGKFVDVSVENGKAS-------QTKTATNEQLEEAMEALLALGYKAAELKK- 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + E Q I+ +L+ + Sbjct: 172 IRKFF--EGTNETAEQYIKSSLKML 194 >gi|327439540|dbj|BAK15905.1| holliday junction resolvasome, DNA-binding subunit [Solibacillus silvestris StLB046] Length = 251 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 45/201 (22%), Positives = 93/201 (46%), Gaps = 3/201 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + + +Y++++ QG+ +++Y P ++V +R+D L Sbjct: 46 MYDYLKGQVTRVTPEYIVLEQQGIGWMLYTPNPFAFR--TSASEQQIYVSLQVREDAQNL 103 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S R+ F L V G+G + A+ +L+ T ++++I +++ + + PG+ K Sbjct: 104 YGFNSLEQRELFKKLIQVSGIGPKGALAILASGNPTSVIQAIEMEDEAFLIRFPGVGKKT 163 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK L V+ + + A+ ALV LGY + + Sbjct: 164 ARQMILDLKGKLDMLLDHVELPSAENELPLFGVNPNEHELQEAMLALVALGYSEKELDK- 222 Query: 181 VVSVLKKEKNIADDSQIIRLA 201 + L ++ + I+ A Sbjct: 223 IRPQLSEDDKLTTTDAYIKQA 243 >gi|119489537|ref|ZP_01622298.1| Holliday junction DNA helicase motor protein [Lyngbya sp. PCC 8106] gi|119454616|gb|EAW35763.1| Holliday junction DNA helicase motor protein [Lyngbya sp. PCC 8106] Length = 211 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 53/213 (24%), Positives = 102/213 (47%), Gaps = 13/213 (6%) Query: 1 MIGKIKGNIEGLYEDY-----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55 MIG +KG + + ++ +L++ + Y + R ++ L +G+ +F +R+ Sbjct: 1 MIGYLKGTVVAIQKNNSNRVILLLETNNIGYEVQIVPRMIAQLPTMGESIQVFTHLQVRE 60 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 DQ+ L+GF S +R F L SV G+G ++A+ +L+ + TELV++I+ +N+KV+A+ PG Sbjct: 61 DQMVLYGFSSFAERDLFRQLVSVSGIGTQLAIALLNTLELTELVQAIVGENTKVLAKTPG 120 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 + K A RI ELK K + + L+ LGY Sbjct: 121 VGTKTAQRIALELKTKLAQWRQEAGLTTLVSSGLTVEV------QEEIEMTLLALGYTGS 174 Query: 176 QATTAVVSVLKK--EKNIADDSQIIRLALRAIS 206 + A+ + ++ + + I+ A+ ++ Sbjct: 175 EVMQALEFLSQEQQLSSQTSTEEWIKKAIAWMA 207 >gi|270291966|ref|ZP_06198181.1| holliday junction DNA helicase RuvA [Streptococcus sp. M143] gi|270279494|gb|EFA25336.1| holliday junction DNA helicase RuvA [Streptococcus sp. M143] Length = 197 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 97/206 (47%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYEYLKGIITKITAKYIVLEANGIGYILHVS-NPYAYSGQVNQETQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + S + ++ + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVVASDDLPAKVA------VQASAENQELEEAMEAMLALGYKATE---- 169 Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205 + + K + D I+ AL+ + Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195 >gi|83950117|ref|ZP_00958850.1| Holliday junction DNA helicase motor protein [Roseovarius nubinhibens ISM] gi|83838016|gb|EAP77312.1| Holliday junction DNA helicase motor protein [Roseovarius nubinhibens ISM] Length = 216 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 61/213 (28%), Positives = 104/213 (48%), Gaps = 17/213 (7%) Query: 10 EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69 + ED+VL+DV+GV Y++YC RTL L +G+ L+ + +R+D ++LFGF S +++ Sbjct: 2 DYRAEDHVLLDVRGVGYLVYCSDRTLQALPPVGEHTALYTDLLVREDLLQLFGFTSLVEK 61 Query: 70 QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 +W LL VQG+GA+ ++ +L + + +I L + + G+ K A R++ ELK Sbjct: 62 EWHRLLMGVQGIGAKASLAILGTLGVEGVSRAINLGDWNALKAAKGVGPKTAQRVVNELK 121 Query: 130 GKAISLSSVVQQDMSCVNKEQAHICS----------------MPSFAINAISALVNLGYG 173 KA + ++ + S A+SAL NLGY Sbjct: 122 DKAPQVMAMGAGAATAPMPAPDDQDEVIETPRAAAAPTPARASQSAQAEALSALSNLGYA 181 Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 +A +AV A+ +IR AL+ ++ Sbjct: 182 PGEAASAVAQAADTAPE-AETPALIRAALKLLA 213 >gi|295112392|emb|CBL31029.1| Holliday junction DNA helicase subunit RuvA [Enterococcus sp. 7L76] Length = 218 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 46/206 (22%), Positives = 89/206 (43%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + Y++++ G+ Y I GK+ L++ +R+D L Sbjct: 15 MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 73 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMK 119 FGF S ++Q F+ L SV G+G + + +++ + L+ +I ++ + + PG+ K Sbjct: 74 FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 133 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +++ +LKGK L S + E + + A+ AL LGY + Sbjct: 134 TAQQMILDLKGKLGELESSEAAVAAMTATEA--VTTSNQALAEALEALSALGYSDREIKR 191 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + + D + AL+ + Sbjct: 192 ITKQLEALGETTTDV--YLSNALKFM 215 >gi|254410540|ref|ZP_05024319.1| Holliday junction DNA helicase RuvA [Microcoleus chthonoplastes PCC 7420] gi|196182746|gb|EDX77731.1| Holliday junction DNA helicase RuvA [Microcoleus chthonoplastes PCC 7420] Length = 210 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 55/215 (25%), Positives = 101/215 (46%), Gaps = 15/215 (6%) Query: 1 MIGKIKGNIEGLYED-----YVLIDVQGVCYIIYCPIRTLSCLGKIGDF--CTLFVETHM 53 MI +KG + + + ++++V + Y + R LS +IG +F + Sbjct: 1 MISYLKGTVATIQKGNGNRVTLILEVNQIGYEVQIT-RQLSQEVQIGSEQVVQVFTHLQI 59 Query: 54 RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113 R+DQ L+GF S +R F L SV G+GA++A+ ++ + LV++I+ N++ +A+ Sbjct: 60 REDQQILYGFASAAERDLFRQLVSVSGIGAQLAIALIDTLGLQNLVQAIVTGNTRTLAKT 119 Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 PG+ K A RI ELK K + + V + P+ + L+ LGY Sbjct: 120 PGVGSKTAERIALELKTKLSEW-----RKFAGVETPASATGPSPAILEDVEMTLLALGYE 174 Query: 174 QDQATTAVVSVLKK--EKNIADDSQIIRLALRAIS 206 + T A+ ++ + + + IR A+ +S Sbjct: 175 TAEITQALNAISQDALLAKNPNAEEWIRRAIAWLS 209 >gi|312901232|ref|ZP_07760515.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0470] gi|311291609|gb|EFQ70165.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0470] Length = 230 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 46/206 (22%), Positives = 89/206 (43%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + Y++++ G+ Y I GK+ L++ +R+D L Sbjct: 27 MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 85 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMK 119 FGF S ++Q F+ L SV G+G + + +++ + L+ +I ++ + + PG+ K Sbjct: 86 FGFCSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 145 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +++ +LKGK L S + E + + A+ AL LGY + Sbjct: 146 TAQQMILDLKGKLGELESSEAAVAAMTATEA--VTTSNQALAEALEALSALGYSDREIKR 203 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + + D + AL+ + Sbjct: 204 ITKQLEALGETTTDV--YLSNALKFM 227 >gi|257417484|ref|ZP_05594478.1| holliday junction DNA helicase RuvA [Enterococcus faecalis AR01/DG] gi|257159312|gb|EEU89272.1| holliday junction DNA helicase RuvA [Enterococcus faecalis ARO1/DG] Length = 204 Score = 134 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 46/206 (22%), Positives = 89/206 (43%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + Y++++ G+ Y I GK+ L++ +R+D L Sbjct: 1 MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMK 119 FGF S ++Q F+ L SV G+G + + +++ + L+ +I ++ + + PG+ K Sbjct: 60 FGFGSLDEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +++ +LKGK L S + E + + A+ AL LGY + Sbjct: 120 TAQQMILDLKGKLGELESSEAAVAAMTATEA--VTTSNQALAEALEALSALGYSDREIKR 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + + D + AL+ + Sbjct: 178 ITKQLEALGETTTDV--YLSNALKFM 201 >gi|227555748|ref|ZP_03985795.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis HH22] gi|229550642|ref|ZP_04439367.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis ATCC 29200] gi|307268982|ref|ZP_07550345.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX4248] gi|307274076|ref|ZP_07555285.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0855] gi|307284121|ref|ZP_07564291.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0860] gi|307287114|ref|ZP_07567187.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0109] gi|227175103|gb|EEI56075.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis HH22] gi|229304208|gb|EEN70204.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis ATCC 29200] gi|306501893|gb|EFM71183.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0109] gi|306503492|gb|EFM72741.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0860] gi|306509201|gb|EFM78262.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0855] gi|306514651|gb|EFM83203.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX4248] gi|315026742|gb|EFT38674.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX2137] gi|315033494|gb|EFT45426.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0017] gi|315036485|gb|EFT48417.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0027] gi|315148995|gb|EFT93011.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX4244] gi|315151351|gb|EFT95367.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0012] gi|315165799|gb|EFU09816.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX1302] gi|315573928|gb|EFU86119.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0309B] gi|315581880|gb|EFU94071.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0309A] gi|327533913|gb|AEA92747.1| crossover junction ATP-dependent DNA helicase RuvA [Enterococcus faecalis OG1RF] gi|329576228|gb|EGG57746.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX1467] Length = 223 Score = 134 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 46/206 (22%), Positives = 89/206 (43%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + Y++++ G+ Y I GK+ L++ +R+D L Sbjct: 20 MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 78 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMK 119 FGF S ++Q F+ L SV G+G + + +++ + L+ +I ++ + + PG+ K Sbjct: 79 FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 138 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +++ +LKGK L S + E + + A+ AL LGY + Sbjct: 139 TAQQMILDLKGKLGELESSEAAVAAMTATEA--VTTSNQALAEALEALSALGYSDREIKR 196 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + + D + AL+ + Sbjct: 197 ITKQLEALGETTTDV--YLSNALKFM 220 >gi|261337766|ref|ZP_05965650.1| holliday junction DNA helicase RuvA [Bifidobacterium gallicum DSM 20093] gi|270277219|gb|EFA23073.1| holliday junction DNA helicase RuvA [Bifidobacterium gallicum DSM 20093] Length = 212 Score = 134 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 63/210 (30%), Positives = 107/210 (50%), Gaps = 7/210 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + + LIDV GV Y + L+ L +G T+F + QD I L Sbjct: 1 MIGMLSGQVAAVDTAAALIDVHGVGYEVRMAGADLATL-HVGQDATVFTSMSVSQDAITL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL ++ F+ LQ V G+G +VA+ +L + A +L +I ++ +A+ PG+ K Sbjct: 60 FGFLDHAAKRMFLQLQKVSGIGPKVALSLLGTLDAGQLAHAIYDGDATALAKAPGLGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELKG L+++ S + + ++ + AL++LG+ Q A A Sbjct: 120 AQKIILELKGSLD-LAALDDASGSDTSVAASAHAPEDRGRLDVVEALISLGWRQQDAQHA 178 Query: 181 VVSVLKKE----KNIAD-DSQIIRLALRAI 205 V SV+ ++ AD +++R AL ++ Sbjct: 179 VDSVIHEQDLPTPLAADMVPEVLRAALTSL 208 >gi|15900116|ref|NP_344720.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae TIGR4] gi|111657940|ref|ZP_01408649.1| hypothetical protein SpneT_02000889 [Streptococcus pneumoniae TIGR4] gi|148987917|ref|ZP_01819380.1| Holliday junction DNA helicase motor protein [Streptococcus pneumoniae SP6-BS73] gi|148992760|ref|ZP_01822403.1| Holliday junction DNA helicase motor protein [Streptococcus pneumoniae SP9-BS68] gi|149001716|ref|ZP_01826689.1| Holliday junction DNA helicase motor protein [Streptococcus pneumoniae SP14-BS69] gi|149005932|ref|ZP_01829661.1| Holliday junction DNA helicase motor protein [Streptococcus pneumoniae SP18-BS74] gi|168486048|ref|ZP_02710556.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae CDC1087-00] gi|168490355|ref|ZP_02714554.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae SP195] gi|168493877|ref|ZP_02718020.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae CDC3059-06] gi|169832637|ref|YP_001693700.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae Hungary19A-6] gi|237649747|ref|ZP_04523999.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae CCRI 1974] gi|237821445|ref|ZP_04597290.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae CCRI 1974M2] gi|307126405|ref|YP_003878436.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae 670-6B] gi|20455255|sp|Q97SY4|RUVA_STRPN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560133|sp|B1I8F7|RUVA_STRPI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|14971646|gb|AAK74360.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae TIGR4] gi|147760174|gb|EDK67163.1| Holliday junction DNA helicase motor protein [Streptococcus pneumoniae SP14-BS69] gi|147762288|gb|EDK69249.1| Holliday junction DNA helicase motor protein [Streptococcus pneumoniae SP18-BS74] gi|147926381|gb|EDK77454.1| Holliday junction DNA helicase motor protein [Streptococcus pneumoniae SP6-BS73] gi|147928486|gb|EDK79501.1| Holliday junction DNA helicase motor protein [Streptococcus pneumoniae SP9-BS68] gi|168995139|gb|ACA35751.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae Hungary19A-6] gi|183570844|gb|EDT91372.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae CDC1087-00] gi|183571324|gb|EDT91852.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae SP195] gi|183576015|gb|EDT96543.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae CDC3059-06] gi|306483467|gb|ADM90336.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae 670-6B] gi|332075851|gb|EGI86318.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae GA17570] gi|332076630|gb|EGI87092.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae GA17545] gi|332077485|gb|EGI87946.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae GA41301] gi|332204192|gb|EGJ18257.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae GA47901] Length = 197 Score = 134 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 96/206 (46%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYAYLKGIITKITAKYIVLETNGIGYILHV-ANPYAYSGQVNQEAQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + + ++ + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVVAGDDLPAKVA------VQASAENQELEEAMEAMLALGYKATE---- 169 Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205 + + K + D I+ AL+ + Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195 >gi|328881167|emb|CCA54406.1| Holliday junction DNA helicase RuvA [Streptomyces venezuelae ATCC 10712] Length = 210 Score = 134 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 57/212 (26%), Positives = 95/212 (44%), Gaps = 11/212 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L +I+V GV + C TL+ L +IG L +R+D + L Sbjct: 1 MIAFVSGPVAALAPTTAVIEVGGVGMAVQCTPGTLAGL-RIGADARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L + L ++ + K + +PGI K Sbjct: 60 YGFADDDERQVFELLQTASGVGPRLAQAMLGVHSPDALRVAVATGDEKALTAVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ E V ++A + +AL+ LGY +A A Sbjct: 120 AQKLLLE----LKDKLGAPLGSSGLVGAQRAAAAGPAPWTEQLSAALIGLGYASREAEEA 175 Query: 181 VVSVLKK------EKNIADDSQIIRLALRAIS 206 V +V + A Q++R AL++++ Sbjct: 176 VAAVTPQAEEAIAAGGAAPVPQLLRAALQSLN 207 >gi|300741595|ref|ZP_07071616.1| holliday junction DNA helicase RuvA [Rothia dentocariosa M567] gi|300380780|gb|EFJ77342.1| holliday junction DNA helicase RuvA [Rothia dentocariosa M567] Length = 206 Score = 134 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 57/207 (27%), Positives = 101/207 (48%), Gaps = 12/207 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G++ + + ++DV G ++ RTLS L + G TL +R+D + L Sbjct: 1 MIASLTGHVTHVGLESAILDVNGFGMLVRATARTLSNL-RTGSTATLLTSMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F ++ SV G+G R+A+ VLS TATE+ ++ + K ++PGI K Sbjct: 60 YGFAEPAEREVFEMMLSVSGIGPRIALAVLSVHTATEVERAVATGDDKAFTKVPGIGPKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL GK I +S E+ ++ + AL +LG+ + A A Sbjct: 120 ARRIVLELAGKLI---------LSEGQAEENAPAQGIAWKPQVMDALTSLGWSEKDADAA 170 Query: 181 VVSVLKKEKNIAD--DSQIIRLALRAI 205 + + ++ + +R L ++ Sbjct: 171 IDAYVQHNPDAEKEAVGVALRGVLASL 197 >gi|332202100|gb|EGJ16169.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae GA41317] Length = 197 Score = 134 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 96/206 (46%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYAYLKGIITKITAKYIVLETNGIGYILHV-ANPYAYSGQVNQEAQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + + ++ + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVVAGDDLPAKIA------VQASAENQELEEAMEAMLALGYKATE---- 169 Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205 + + K + D I+ AL+ + Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195 >gi|15902209|ref|NP_357759.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae R6] gi|116515482|ref|YP_815689.1| Holliday junction DNA helicase motor protein [Streptococcus pneumoniae D39] gi|148996605|ref|ZP_01824323.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae SP11-BS70] gi|149011051|ref|ZP_01832356.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae SP19-BS75] gi|168576389|ref|ZP_02722272.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae MLV-016] gi|182683163|ref|YP_001834910.1| holliday junction DNA helicase motor protein [Streptococcus pneumoniae CGSP14] gi|221231090|ref|YP_002510242.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae ATCC 700669] gi|303255118|ref|ZP_07341194.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae BS455] gi|307066862|ref|YP_003875828.1| Holliday junction resolvasome DNA-binding subunit [Streptococcus pneumoniae AP200] gi|32171637|sp|Q8DRE8|RUVA_STRR6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|122279425|sp|Q04MQ9|RUVA_STRP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560134|sp|B2IS15|RUVA_STRPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254767390|sp|B8ZKD4|RUVA_STRPJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|15457707|gb|AAK98969.1| Holliday junction DNA helicase [Streptococcus pneumoniae R6] gi|116076058|gb|ABJ53778.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae D39] gi|147757180|gb|EDK64219.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae SP11-BS70] gi|147764687|gb|EDK71617.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae SP19-BS75] gi|182628497|gb|ACB89445.1| holliday junction DNA helicase motor protein [Streptococcus pneumoniae CGSP14] gi|183577836|gb|EDT98364.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae MLV-016] gi|220673550|emb|CAR68036.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae ATCC 700669] gi|301793458|emb|CBW35831.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae INV104] gi|301801130|emb|CBW33803.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae INV200] gi|302597948|gb|EFL65018.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae BS455] gi|306408399|gb|ADM83826.1| Holliday junction resolvasome, DNA-binding subunit [Streptococcus pneumoniae AP200] Length = 197 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 96/206 (46%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYAYLKGIITKITAKYIVLETNGIGYILHV-ANPYAYSGQVNQEAQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + + ++ + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVVAGDGLPAKVA------VQASAENQELEEAMEAMLALGYKATE---- 169 Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205 + + K + D I+ AL+ + Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195 >gi|218264168|ref|ZP_03478052.1| hypothetical protein PRABACTJOHN_03742 [Parabacteroides johnsonii DSM 18315] gi|218222214|gb|EEC94864.1| hypothetical protein PRABACTJOHN_03742 [Parabacteroides johnsonii DSM 18315] Length = 197 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 103/205 (50%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I L ++++ G+ Y + + T + D ++V +R+D L Sbjct: 1 MIEYIKGEIVELTPARMVLECAGIGYELNISLNTYTFYNGKADG-KVYVYEIIREDAHVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R+ F++L +V GVG A +LS ++ +ELV +I ++ + + GI K Sbjct: 60 FGFAGIEERELFLMLTTVPGVGPNTARMILSSLSPSELVRAIADKDENSLVAVKGIGTKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K ++ + S + A A++ALV LG+ + + A Sbjct: 120 AQRILVDLKNKVKAVEGLTTVST------PKTPASNNAVAEEAVAALVMLGFQKAASQKA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++LK ++A Q+I+ ALR + Sbjct: 174 VHTILKGSPSLA-VEQVIKTALRML 197 >gi|296270037|ref|YP_003652669.1| Holliday junction DNA helicase RuvA [Thermobispora bispora DSM 43833] gi|296092824|gb|ADG88776.1| Holliday junction DNA helicase RuvA [Thermobispora bispora DSM 43833] Length = 206 Score = 134 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 52/212 (24%), Positives = 97/212 (45%), Gaps = 14/212 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + + +I+V G +++C TL+ L ++G+ L +R+D + L Sbjct: 1 MIASVAGKVAAIGPETAVIEVGGFGVLVHCTPATLAGL-RVGEPARLATALVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF SD +R F L +V GVG R+A+ +L+ + L ++ + K + +PGI K Sbjct: 60 YGFASDDERAIFESLLTVNGVGPRLALAMLAVHSPNALRTAVASGDVKALTMVPGIGPKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RIM EL+ + + + + LV LGY A A Sbjct: 120 AQRIMLELRDRL-------GPARATAAGMPDGRGGPSPWREQVHAGLVGLGYSARDADEA 172 Query: 181 VVSVLKKEKN------IADDSQIIRLALRAIS 206 + ++ + + + + +++ ALR +S Sbjct: 173 IAAIAHEAEAAEAAGREPEIAALLKSALRVLS 204 >gi|229547070|ref|ZP_04435795.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX1322] gi|312952497|ref|ZP_07771365.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0102] gi|229307799|gb|EEN73786.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX1322] gi|310629593|gb|EFQ12876.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0102] gi|315153490|gb|EFT97506.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0031] gi|315155061|gb|EFT99077.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0043] gi|315158504|gb|EFU02521.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0312] Length = 223 Score = 134 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 88/206 (42%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + Y++++ G+ Y I GK+ L++ +R+D L Sbjct: 20 MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 78 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMK 119 FGF S ++Q F+ L SV G+G + + +++ + L+ +I ++ + + PG+ K Sbjct: 79 FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 138 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +++ +LKGK L S + + + A+ AL LGY + Sbjct: 139 TAQQMILDLKGKLGELES--SEAAVAAMTVTEVVTTSNQALAEALEALSALGYSDREIKR 196 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + + D + AL+ + Sbjct: 197 ITKQLEALGETTTDV--YLSNALKFM 220 >gi|29374722|ref|NP_813874.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis V583] gi|255974579|ref|ZP_05425165.1| holliday junction DNA helicase RuvA [Enterococcus faecalis T2] gi|256956955|ref|ZP_05561126.1| holliday junction DNA helicase RuvA [Enterococcus faecalis DS5] gi|256964042|ref|ZP_05568213.1| holliday junction DNA helicase RuvA [Enterococcus faecalis HIP11704] gi|257078631|ref|ZP_05572992.1| holliday junction DNA helicase RuvA [Enterococcus faecalis JH1] gi|257084064|ref|ZP_05578425.1| holliday junction DNA helicase RuvA [Enterococcus faecalis Fly1] gi|257087893|ref|ZP_05582254.1| holliday junction DNA helicase RuvA [Enterococcus faecalis D6] gi|257418785|ref|ZP_05595779.1| holliday junction DNA helicase ruvA [Enterococcus faecalis T11] gi|294780021|ref|ZP_06745400.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis PC1.1] gi|300862283|ref|ZP_07108363.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TUSoD Ef11] gi|44888456|sp|Q839T6|RUVA_ENTFA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|29342180|gb|AAO79946.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis V583] gi|255967451|gb|EET98073.1| holliday junction DNA helicase RuvA [Enterococcus faecalis T2] gi|256947451|gb|EEU64083.1| holliday junction DNA helicase RuvA [Enterococcus faecalis DS5] gi|256954538|gb|EEU71170.1| holliday junction DNA helicase RuvA [Enterococcus faecalis HIP11704] gi|256986661|gb|EEU73963.1| holliday junction DNA helicase RuvA [Enterococcus faecalis JH1] gi|256992094|gb|EEU79396.1| holliday junction DNA helicase RuvA [Enterococcus faecalis Fly1] gi|256995923|gb|EEU83225.1| holliday junction DNA helicase RuvA [Enterococcus faecalis D6] gi|257160613|gb|EEU90573.1| holliday junction DNA helicase ruvA [Enterococcus faecalis T11] gi|294452915|gb|EFG21338.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis PC1.1] gi|300848808|gb|EFK76565.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TUSoD Ef11] Length = 204 Score = 134 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 46/206 (22%), Positives = 89/206 (43%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + Y++++ G+ Y I GK+ L++ +R+D L Sbjct: 1 MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMK 119 FGF S ++Q F+ L SV G+G + + +++ + L+ +I ++ + + PG+ K Sbjct: 60 FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +++ +LKGK L S + E + + A+ AL LGY + Sbjct: 120 TAQQMILDLKGKLGELESSEAAVAAMTATEA--VTTSNQALAEALEALSALGYSDREIKR 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + + D + AL+ + Sbjct: 178 ITKQLEALGETTTDV--YLSNALKFM 201 >gi|323464267|gb|ADX76420.1| Holliday junction DNA helicase RuvA [Staphylococcus pseudintermedius ED99] Length = 199 Score = 134 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 95/206 (46%), Gaps = 10/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 M I G + L+ +++++ G+ Y I P + + ++ +R+D Sbjct: 1 MYAYISGKLTALHPTHIIVETTSGIGYEIQTP-NSYRFQKNLDQMVKVYTSLIVREDAQL 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF+ ++ F+ L V G+G + A+ +L+ + E+ +I +N + Q PGI K Sbjct: 60 LYGFIDQEEKDMFLSLIKVTGIGPKSALAILAASSPNEVKRAIENENDAYLTQFPGIGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I+ +LKGK + V + + +++ A+ AL LGY + + Sbjct: 120 TARQIVLDLKGKVVVTEEVSEGLLDIATEQE------DLAVQEALLALEALGYSKRELKK 173 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 V ++++ +D + ++ L+ + Sbjct: 174 -VEKAMQQQI-FSDVDEAVKYGLKQL 197 >gi|315143243|gb|EFT87259.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX2141] Length = 230 Score = 134 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 46/206 (22%), Positives = 89/206 (43%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + Y++++ G+ Y I GK+ L++ +R+D L Sbjct: 27 MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 85 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMK 119 FGF S ++Q F+ L SV G+G + + +++ + L+ +I ++ + + PG+ K Sbjct: 86 FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 145 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +++ +LKGK L S + E + + A+ AL LGY + Sbjct: 146 TAQQMILDLKGKLGELESSEAAVAAMTATEA--VTTSNQALAEALEALSALGYSDREIKR 203 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + + D + AL+ + Sbjct: 204 ITKQLEALGETTTDV--YLSNALKFM 227 >gi|15827159|ref|NP_301422.1| Holliday junction DNA helicase RuvA [Mycobacterium leprae TN] gi|221229637|ref|YP_002503053.1| Holliday junction DNA helicase RuvA [Mycobacterium leprae Br4923] gi|730695|sp|P40832|RUVA_MYCLE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254767378|sp|B8ZUI1|RUVA_MYCLB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|466820|gb|AAA17095.1| ruvA [Mycobacterium leprae] gi|13092707|emb|CAC29990.1| Holliday junction DNA helicase component [Mycobacterium leprae] gi|219932744|emb|CAR70575.1| Holliday junction DNA helicase component [Mycobacterium leprae Br4923] Length = 203 Score = 134 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 54/208 (25%), Positives = 90/208 (43%), Gaps = 12/208 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +I+ G+ Y + L+ L + G L +R+D + L Sbjct: 1 MIFSVRGEVLEVALDHAVIEAAGIGYRVNATPSALATL-RQGSQARLVTAMVVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F+ L SV GVG R+AM L+ A L +++ + + ++PGI + Sbjct: 60 YGFSDAENRDLFLALLSVSGVGPRLAMATLAVHDAAALRQALADSDVASLTRVPGIGKRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL+ K + + + + ALV LG+ QA A Sbjct: 120 AERIVLELRDKV--------GPVGASGLTVGTAADGNAVRGSVVEALVGLGFAAKQAEEA 171 Query: 181 VVSVLKKE---KNIADDSQIIRLALRAI 205 VL E S +R AL + Sbjct: 172 TDQVLDGELGKDGAVATSSALRAALSLL 199 >gi|307276309|ref|ZP_07557435.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX2134] gi|312908743|ref|ZP_07767683.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis DAPTO 512] gi|312979206|ref|ZP_07790910.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis DAPTO 516] gi|306506974|gb|EFM76118.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX2134] gi|310625342|gb|EFQ08625.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis DAPTO 512] gi|311287971|gb|EFQ66527.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis DAPTO 516] gi|315171308|gb|EFU15325.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX1342] Length = 223 Score = 134 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 88/206 (42%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + Y++++ G+ Y I GK+ L++ +R+D L Sbjct: 20 MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 78 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMK 119 FGF S ++Q F+ L SV G+G + + +++ + L+ +I ++ + + PG+ K Sbjct: 79 FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 138 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +++ +LKGK L S + + + A+ AL LGY + Sbjct: 139 TAQQMILDLKGKLGELESSEAAVAAMTAT--EVVTTSNQALAEALEALSALGYSDREIKR 196 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + + D + AL+ + Sbjct: 197 ITKQLEALGETTTDV--YLSNALKFM 220 >gi|289168757|ref|YP_003447026.1| holiday junction DNA helicase RuvA [Streptococcus mitis B6] gi|303259227|ref|ZP_07345205.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae SP-BS293] gi|303260983|ref|ZP_07346932.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae SP14-BS292] gi|303263310|ref|ZP_07349233.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae BS397] gi|303265475|ref|ZP_07351375.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae BS457] gi|303267967|ref|ZP_07353769.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae BS458] gi|288908324|emb|CBJ23166.1| holiday junction DNA helicase RuvA [Streptococcus mitis B6] gi|302637820|gb|EFL68306.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae SP14-BS292] gi|302639645|gb|EFL70102.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae SP-BS293] gi|302642663|gb|EFL73008.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae BS458] gi|302644915|gb|EFL75162.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae BS457] gi|302647083|gb|EFL77307.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae BS397] Length = 197 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 96/206 (46%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYEYLKGIITKITAKYIVLETNGIGYILHV-ANPYAYSGQVNQEAQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + + ++ + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVVAGDDLPAKVA------VQASAENQELEEAMEAMLALGYKATE---- 169 Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205 + + K + D I+ AL+ + Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195 >gi|307711076|ref|ZP_07647498.1| holliday junction DNA helicase RuvA [Streptococcus mitis SK321] gi|307617038|gb|EFN96216.1| holliday junction DNA helicase RuvA [Streptococcus mitis SK321] Length = 197 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 46/206 (22%), Positives = 96/206 (46%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI++ + G+I ++V +R+D L Sbjct: 1 MYEYLKGIITKITAKYIVLETNGIGYILHV-ANPYAYSGQINQEAQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + + K + + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVVAGDDLPA------KVEVQASAENQELEEAMEAMLALGYKATE---- 169 Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205 + + K + D I+ AL+ + Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195 >gi|309775420|ref|ZP_07670423.1| holliday junction DNA helicase RuvA [Erysipelotrichaceae bacterium 3_1_53] gi|308916809|gb|EFP62546.1| holliday junction DNA helicase RuvA [Erysipelotrichaceae bacterium 3_1_53] Length = 193 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 97/206 (47%), Gaps = 18/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I D ++I+ G+ Y +Y L L+ H+R+D I L Sbjct: 1 MIAFIKGIIHSYSNDSLIIENNGIGYRVYVSNPMAVRL---NAEVILYTYQHVREDAITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F+ L SV+GVG + A+G+L A ++ +I + KV+ +PGI K Sbjct: 58 FGFPTMEERDLFLQLISVKGVGPKTALGMLGVCPAKNMIAAIENNDVKVLKGLPGIGAKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK + + ++ ++A+ AL LGY + + Sbjct: 118 ASQIVLDLKGKLVEEVTELE-------------IKENEQLLDALEALKALGYKNAELNSI 164 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +E +D Q IR L ++ Sbjct: 165 KKELSTQEPMTSD--QYIRKGLGILA 188 >gi|42518563|ref|NP_964493.1| Holliday junction DNA helicase RuvA [Lactobacillus johnsonii NCC 533] gi|81668203|sp|Q74KV9|RUVA_LACJO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|41582848|gb|AAS08459.1| Holliday junction DNA helicase RuvA [Lactobacillus johnsonii NCC 533] gi|329666839|gb|AEB92787.1| Holliday junction DNA helicase RuvA [Lactobacillus johnsonii DPC 6026] Length = 192 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 16/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + + Y+++DV GV Y I CP T++VE +R I L Sbjct: 1 MFEYLKGIVTKIDPAYIVLDVNGVGYKILCPTPYSY---DENQPATIYVEQVVRDTGITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS D++ F+ L SV G+G + A+ +++ L +I K + + PG+ K Sbjct: 58 YGFLSLEDKELFLKLLSVSGIGPKSAVAIMAAEDTDSLASAIQNGEVKYLTRFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK K+ + +A+ ALV LGY Q + Sbjct: 118 ASQIVLDLKGKLGDY-----------VKKSTAAADLTPSLQDALLALVALGYTQKEVDRI 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + K +N AD ++ AL + Sbjct: 167 TPKLAKLPENTADG--YVKEALALL 189 >gi|254391315|ref|ZP_05006519.1| holliday junction ATP-dependent DNA helicase ruvA [Streptomyces clavuligerus ATCC 27064] gi|197705006|gb|EDY50818.1| holliday junction ATP-dependent DNA helicase ruvA [Streptomyces clavuligerus ATCC 27064] Length = 253 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 97/206 (47%), Gaps = 11/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L ++ V GV ++C TL+ L ++G+ L +R+D + L Sbjct: 1 MIAFVSGQVAALAPTTAVVAVGGVGMSVHCTPATLAGL-RVGEEARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ + L ++ + + + +PGI K Sbjct: 60 YGFADDDERQVFELLQTASGVGPRLAQAMLAVHSPDALRTAVAGGDERALTAVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK + + + + S++ +AL+ LGY +A A Sbjct: 120 AQKLLLELKDRL-------GEPTGVPGARRGAAAAPASWSDQLHAALIGLGYAGREADEA 172 Query: 181 VVSVLKKEKNIADDSQ---IIRLALR 203 V +V + Q +++ AL+ Sbjct: 173 VAAVTPQAAAAGAAPQVGVLLKAALQ 198 >gi|218244912|ref|YP_002370283.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 8801] gi|257057937|ref|YP_003135825.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 8802] gi|226725438|sp|B7JZG7|RUVA_CYAP8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|218165390|gb|ACK64127.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 8801] gi|256588103|gb|ACU98989.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 8802] Length = 210 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 51/214 (23%), Positives = 100/214 (46%), Gaps = 13/214 (6%) Query: 1 MIGKIKGNIEGLYEDY-----VLIDVQGVCYIIYCPIRTLSCLGKIG-DFCTLFVETHMR 54 MI +KGN ++ ++++V V Y + P R L + + +F ++ Sbjct: 1 MISYLKGNPIETLKNTQNRILLILEVNQVGYEMQIPSRFARELSQNPRETLQVFTHLQVK 60 Query: 55 QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114 +Q L+GF + +R+ F L SV G+GA++A+ ++ + ELV++I+ N + ++Q P Sbjct: 61 DEQPILYGFATAAERELFRQLVSVSGIGAQLAIALIDTLGLEELVQAIVNGNIRTLSQTP 120 Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 G+ K A RI ELK K +V + + + L+ LGY Sbjct: 121 GVGQKTAERIALELKTKLSQWRKLVGITLPSTS-----AIPSLEVLEDVEMTLLALGYTN 175 Query: 175 DQATTAVVSVLKKEKNIADD--SQIIRLALRAIS 206 ++ A+ ++ + + + + + IR A+ +S Sbjct: 176 EEINKAISTLSQDNQMLKNTNSEEWIREAIAWLS 209 >gi|75909032|ref|YP_323328.1| Holliday junction DNA helicase RuvA [Anabaena variabilis ATCC 29413] gi|123758778|sp|Q3M9A3|RUVA_ANAVT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|75702757|gb|ABA22433.1| Holliday junction DNA helicase subunit RuvA [Anabaena variabilis ATCC 29413] Length = 213 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 61/213 (28%), Positives = 93/213 (43%), Gaps = 14/213 (6%) Query: 1 MIGKIKGNIEGLYE---DYVLI--DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55 MI +KG + G+ + V++ +V G+ Y + P R L GD +F +R+ Sbjct: 1 MISYLKGIVAGIQNVGSNRVILTLEVNGMGYDLQIPQRLAKQLPTTGDLVQIFTHYQVRE 60 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 + L+GF S +R F L SV GVGA A+ +L + +LV++II N +++ Q PG Sbjct: 61 EIPLLYGFSSPAERDLFRHLLSVSGVGAASAIALLDTLELPDLVQAIIAANVQILIQAPG 120 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 + KIA RI ELK K I A P L LGY Sbjct: 121 VGKKIADRICLELKAKLIEWR-------KSAGFFVATEGPAPGILEEVQMTLFALGYTAH 173 Query: 176 QATTAVVSVLKK--EKNIADDSQIIRLALRAIS 206 + + A+ V + A I+ A+ +S Sbjct: 174 EVSHALHVVSEDIGLPKDAYVEDWIKQAIAHLS 206 >gi|320093778|ref|ZP_08025625.1| crossover junction ATP-dependent DNA helicase RuvA [Actinomyces sp. oral taxon 178 str. F0338] gi|319979279|gb|EFW10775.1| crossover junction ATP-dependent DNA helicase RuvA [Actinomyces sp. oral taxon 178 str. F0338] Length = 199 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 92/205 (44%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G +E + D V++ GV + + L + GD + +R+D + L Sbjct: 1 MIALLRGVVESIGLDQVVVSAGGVGFGVRVTPAHAQSLTR-GDEAVVHTAMVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L V G+G + A+ L+ + +L ++ Q+ + +IPG+ K Sbjct: 60 YGFASADERDVFERLMGVTGIGPKTALAALAVLRPDDLRRAVRDQDIATLQKIPGVGRKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ E+ GK + + + +Q +ALV LG+ + QA A Sbjct: 120 AQRMALEVGGKLGAPAQLPEQGGPA-------AAPAGEVEAEVRAALVGLGWSEAQAAKA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ S ++R AL ++ Sbjct: 173 VDAL---SGQGLGASDMLRSALVSL 194 >gi|256855044|ref|ZP_05560405.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis T8] gi|307291531|ref|ZP_07571408.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0411] gi|256709557|gb|EEU24604.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis T8] gi|306497396|gb|EFM66936.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0411] gi|315028754|gb|EFT40686.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX4000] Length = 230 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 46/206 (22%), Positives = 87/206 (42%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + Y++++ G+ Y I GK+ L++ +R+D L Sbjct: 27 MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 85 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMK 119 FGF S ++Q F+ L SV G+G + + +++ + L+ +I ++ + + PG+ K Sbjct: 86 FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 145 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +++ +LKGK L S + E A+ AL LGY + Sbjct: 146 TAQQMILDLKGKLGELESSEAAVAAMTATEALTTS--NQALAEALEALSALGYSDREIKR 203 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + + D + AL+ + Sbjct: 204 ITKQLEALGETTTDV--YLSNALKFM 227 >gi|307710210|ref|ZP_07646653.1| holliday junction DNA helicase RuvA [Streptococcus mitis SK564] gi|307618972|gb|EFN98105.1| holliday junction DNA helicase RuvA [Streptococcus mitis SK564] Length = 197 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 96/206 (46%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI+Y + G++ ++V +R+D L Sbjct: 1 MYEYLKGIITKITAKYIVLETNGIGYILYV-ANPYAYSGQVNQEAQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + + ++ + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVVSGDDLPAKVA------VQASAENQELEEAMEAMLALGYKATE---- 169 Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205 + + K + D I+ AL+ + Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195 >gi|86740076|ref|YP_480476.1| Holliday junction DNA helicase subunit RuvA [Frankia sp. CcI3] gi|86566938|gb|ABD10747.1| Holliday junction DNA helicase subunit RuvA [Frankia sp. CcI3] Length = 247 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 50/186 (26%), Positives = 84/186 (45%), Gaps = 2/186 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L +I+V GV +++C TLS L ++G+ +L +R+ ++ L Sbjct: 1 MIASLAGTVTALTPLSAVIEVGGVGLLVHCSPSTLSRL-RVGESASLATTLIVRETELTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F +LQS GVG ++A VL + ++ ++ V+ ++PGI K Sbjct: 60 YGFADADARDVFEILQSAAGVGPKLAQAVLGVHDPDTVRRAVAEEDLAVLTKVPGIGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMS-CVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ +L+ + + + A ALV LGY +A Sbjct: 120 AQRIVLDLRDRLGPPGDGAPLPGPRLTSGPEPMPADAVGVAATVREALVGLGYSGREADA 179 Query: 180 AVVSVL 185 AV L Sbjct: 180 AVSRAL 185 >gi|148657871|ref|YP_001278076.1| Holliday junction DNA helicase RuvA [Roseiflexus sp. RS-1] gi|166200257|sp|A5UZS3|RUVA_ROSS1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|148569981|gb|ABQ92126.1| Holliday junction DNA helicase subunit RuvA [Roseiflexus sp. RS-1] Length = 197 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 104/206 (50%), Gaps = 11/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + + D+V+++ G+ ++IY P ++ LG IG LF +R+D + L Sbjct: 1 MIASIRGILIAVAADHVVVETGGIGWMIYAPRPVIAALGDIGATVRLFTYLLVREDSLTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + RQ F L SV GVG + A+ +LS T EL +I + +A+ P I K+ Sbjct: 61 YGFETVEQRQLFETLLSVTGVGPQAALNLLSSGTTDELRLAIATGDVTRLARTPRIGKKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELKGK ++ + A ++ + AL++LG+ +A A Sbjct: 121 AERLVLELKGKI---------NVKGLPTGAAVTPAVAAANAELSEALISLGFTDAEAAAA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + ++ D + +RLALR S Sbjct: 172 IAALPSDAPP--DLEERVRLALRYFS 195 >gi|34556867|ref|NP_906682.1| Holliday junction DNA helicase RuvA [Wolinella succinogenes DSM 1740] gi|44888365|sp|Q7MA70|RUVA_WOLSU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|34482582|emb|CAE09582.1| PUTATIVE HOLLIDAY JUNCTION DNA HELICASE [Wolinella succinogenes] Length = 189 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 97/205 (47%), Gaps = 20/205 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KGNIE + ++V GV Y I+ I T + LG+ L + +R++ L Sbjct: 1 MIVALKGNIEKKEPTRLWLEVGGVTYEIFISIHTSAALGE--KEARLLITHLIREEAWSL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +++ F L + GVG + A+ +LS T + I Q+ K + ++PGI K Sbjct: 59 YGFAEEAEKRVFDTLIKINGVGPKAALAILSTYTPPTFAQIIQAQDVKALQRVPGIGPKS 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RIM EL G ++SL ++ S P + AL +LG+ + A Sbjct: 119 AGRIMVELAGFSLSL-------------QEGSKASTPPVFEESRLALESLGFKSELIAKA 165 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ +II+ AL+ + Sbjct: 166 LQNI-----QATTTQEIIKEALKKL 185 >gi|163846991|ref|YP_001635035.1| Holliday junction DNA helicase RuvA [Chloroflexus aurantiacus J-10-fl] gi|222524813|ref|YP_002569284.1| Holliday junction DNA helicase RuvA [Chloroflexus sp. Y-400-fl] gi|189045746|sp|A9WA87|RUVA_CHLAA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254766952|sp|B9LCT8|RUVA_CHLSY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|163668280|gb|ABY34646.1| Holliday junction DNA helicase RuvA [Chloroflexus aurantiacus J-10-fl] gi|222448692|gb|ACM52958.1| Holliday junction DNA helicase RuvA [Chloroflexus sp. Y-400-fl] Length = 195 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 58/204 (28%), Positives = 99/204 (48%), Gaps = 13/204 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G I+ + D+++++ GV +IY P TL+ +G+IG L+ +R+D + L Sbjct: 1 MIASIRGIIQSIGIDHLIVETGGVGLLIYAPRSTLNAVGQIGSETFLYTLLIVREDALTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F L V GVG ++A+ +LS + E+ +SI + +A++PGI K Sbjct: 61 YGFSDPAQRNLFEQLIGVSGVGPKIALNLLSSGSPDEIQKSIAGGDIARLARVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL+GK ++ + L++LGY +A A Sbjct: 121 AERIVLELRGKIDLRQLS-----------GTTPGNVSTLDRELTDILISLGYSATEAAAA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + ++ + +RLALR Sbjct: 170 IAALPGDAPP--TLEERLRLALRY 191 >gi|255971607|ref|ZP_05422193.1| holliday junction DNA helicase RuvA [Enterococcus faecalis T1] gi|257421400|ref|ZP_05598390.1| holliday junction DNA helicase ruvA [Enterococcus faecalis X98] gi|255962625|gb|EET95101.1| holliday junction DNA helicase RuvA [Enterococcus faecalis T1] gi|257163224|gb|EEU93184.1| holliday junction DNA helicase ruvA [Enterococcus faecalis X98] gi|323479298|gb|ADX78737.1| holliday junction DNA helicase RuvA [Enterococcus faecalis 62] Length = 204 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 88/206 (42%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + Y++++ G+ Y I GK+ L++ +R+D L Sbjct: 1 MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMK 119 FGF S ++Q F+ L SV G+G + + +++ + L+ +I ++ + + PG+ K Sbjct: 60 FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +++ +LKGK L S + + + A+ AL LGY + Sbjct: 120 TAQQMILDLKGKLGELES--SEAAVAAMTVTEVVTTSNQALAEALEALSALGYSDREIKR 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + + D + AL+ + Sbjct: 178 ITKQLEALGETTTDV--YLSNALKFM 201 >gi|262037466|ref|ZP_06010926.1| holliday junction DNA helicase RuvA [Leptotrichia goodfellowii F0264] gi|261748501|gb|EEY35880.1| holliday junction DNA helicase RuvA [Leptotrichia goodfellowii F0264] Length = 213 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 57/211 (27%), Positives = 103/211 (48%), Gaps = 8/211 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + DYV +D+ G+ Y I+ ++T LG+ G L+V TH+++D I Sbjct: 1 MFEYIFGELTVKKIDYVALDINGLAYKIFISLKTFEALGETGQDEKLYVHTHVKEDDISF 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ +R+ F L S GVG ++ + +LS +++ +I NSK+ ++PG+ K Sbjct: 61 YGFKTENERELFKALISTSGVGPKLGLAILSTYNVKDVINIVIESNSKLFTKVPGLGDKK 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS------FAINAISALVNLGYGQ 174 A +I+ +LK K L+ + + + + I S S + AL +LGY Sbjct: 121 AQKIILDLKDKVKKLNIIETYNENGEISKGNPIVSDTSNTKILLMKEDIKLALESLGYLN 180 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + + ++ I D + I+ L+ I Sbjct: 181 ADVSKWIKD--EELSQINDIGEAIKSILQKI 209 >gi|17227871|ref|NP_484419.1| Holliday junction DNA helicase RuvA [Nostoc sp. PCC 7120] gi|20455248|sp|Q8YZT2|RUVA_ANASP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|17129720|dbj|BAB72333.1| holliday junction DNA helicase [Nostoc sp. PCC 7120] Length = 213 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 60/213 (28%), Positives = 93/213 (43%), Gaps = 14/213 (6%) Query: 1 MIGKIKGNIEGLYE---DYVLI--DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55 MI +KG + G+ + V++ +V G+ Y + P R L GD +F +R+ Sbjct: 1 MISYLKGIVAGIQNVGSNRVILTLEVNGMGYDLQIPQRLAKQLPTTGDLVQIFTHYQVRE 60 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 + L+GF S +R F L SV GVGA A+ +L + +LV++II N +++ Q PG Sbjct: 61 EIPLLYGFSSPAERDLFRHLLSVSGVGAASAIALLDTLELPDLVQAIIAANVQILIQAPG 120 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 + KIA R+ ELK K I A P L LGY Sbjct: 121 VGKKIAERVCLELKAKLIEWR-------KSAGFFVATEGPAPGILEEVQMTLFALGYTAH 173 Query: 176 QATTAVVSVLKK--EKNIADDSQIIRLALRAIS 206 + + A+ V + A I+ A+ +S Sbjct: 174 EVSHALHVVSEDIGLPKDAYVEDWIKQAIAHLS 206 >gi|256618467|ref|ZP_05475313.1| holliday junction DNA helicase RuvA [Enterococcus faecalis ATCC 4200] gi|256761914|ref|ZP_05502494.1| holliday junction DNA helicase RuvA [Enterococcus faecalis T3] gi|256960754|ref|ZP_05564925.1| holliday junction DNA helicase RuvA [Enterococcus faecalis Merz96] gi|257081405|ref|ZP_05575766.1| holliday junction DNA helicase RuvA [Enterococcus faecalis E1Sol] gi|257088548|ref|ZP_05582909.1| holliday junction DNA helicase ruvA [Enterococcus faecalis CH188] gi|256597994|gb|EEU17170.1| holliday junction DNA helicase RuvA [Enterococcus faecalis ATCC 4200] gi|256683165|gb|EEU22860.1| holliday junction DNA helicase RuvA [Enterococcus faecalis T3] gi|256951250|gb|EEU67882.1| holliday junction DNA helicase RuvA [Enterococcus faecalis Merz96] gi|256989435|gb|EEU76737.1| holliday junction DNA helicase RuvA [Enterococcus faecalis E1Sol] gi|256997360|gb|EEU83880.1| holliday junction DNA helicase ruvA [Enterococcus faecalis CH188] Length = 204 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 88/206 (42%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + Y++++ G+ Y I GK+ L++ +R+D L Sbjct: 1 MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMK 119 FGF S ++Q F+ L SV G+G + + +++ + L+ +I ++ + + PG+ K Sbjct: 60 FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +++ +LKGK L S + + + A+ AL LGY + Sbjct: 120 TAQQMILDLKGKLGELESSEAAVAAMTAT--EVVTTSNQALAEALEALSALGYSDREIKR 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + + D + AL+ + Sbjct: 178 ITKQLEALGETTTDV--YLSNALKFM 201 >gi|312903815|ref|ZP_07762987.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0635] gi|310632759|gb|EFQ16042.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0635] gi|315160794|gb|EFU04811.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0645] gi|315168284|gb|EFU12301.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX1341] gi|315579775|gb|EFU91966.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX0630] Length = 230 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 88/206 (42%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + Y++++ G+ Y I GK+ L++ +R+D L Sbjct: 27 MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 85 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMK 119 FGF S ++Q F+ L SV G+G + + +++ + L+ +I ++ + + PG+ K Sbjct: 86 FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 145 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +++ +LKGK L S + + + A+ AL LGY + Sbjct: 146 TAQQMILDLKGKLGELESSEAAVAAMTAT--EVVTTSNQALAEALEALSALGYSDREIKR 203 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + + D + AL+ + Sbjct: 204 ITKQLEALGETTTDV--YLSNALKFM 227 >gi|227888712|ref|ZP_04006517.1| crossover junction endoribonuclease subunit A [Lactobacillus johnsonii ATCC 33200] gi|227850739|gb|EEJ60825.1| crossover junction endoribonuclease subunit A [Lactobacillus johnsonii ATCC 33200] Length = 192 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 96/205 (46%), Gaps = 16/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + +Y Y+++DV GV Y I CP T++VE +R I L Sbjct: 1 MFEYLKGIVTKIYPAYIVLDVNGVGYKILCPTPYSY---DENQPATIYVEQVVRDTGITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS D++ F+ L SV G+G + A+ +++ L +I K + + PG+ K Sbjct: 58 YGFLSLEDKELFLKLLSVSGIGPKSAVAIMAAEDTDSLASAIQNGEVKYLTRFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK K+ A + +A+ ALV LGY Q + Sbjct: 118 ASQIVLDLKGKLGDY-----------VKKSAAAADLTPSLQDALLALVALGYTQKEVDRI 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + K +N AD ++ AL + Sbjct: 167 TPKLAKLPENTADG--YVKEALALL 189 >gi|148983581|ref|ZP_01816900.1| Holliday junction DNA helicase motor protein [Streptococcus pneumoniae SP3-BS71] gi|149017853|ref|ZP_01834312.1| Holliday junction DNA helicase motor protein [Streptococcus pneumoniae SP23-BS72] gi|168483820|ref|ZP_02708772.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae CDC1873-00] gi|168492137|ref|ZP_02716280.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae CDC0288-04] gi|194397075|ref|YP_002036885.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae G54] gi|225853792|ref|YP_002735304.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae JJA] gi|225855950|ref|YP_002737461.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae P1031] gi|225858040|ref|YP_002739550.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae 70585] gi|226698742|sp|B5E6D0|RUVA_STRP4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254767389|sp|C1CAI9|RUVA_STRP7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254767392|sp|C1CBY3|RUVA_STRZJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254767393|sp|C1CI73|RUVA_STRZP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|147923728|gb|EDK74840.1| Holliday junction DNA helicase motor protein [Streptococcus pneumoniae SP3-BS71] gi|147931417|gb|EDK82395.1| Holliday junction DNA helicase motor protein [Streptococcus pneumoniae SP23-BS72] gi|172042891|gb|EDT50937.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae CDC1873-00] gi|183573620|gb|EDT94148.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae CDC0288-04] gi|194356742|gb|ACF55190.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae G54] gi|225721170|gb|ACO17024.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae 70585] gi|225722475|gb|ACO18328.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae JJA] gi|225726352|gb|ACO22204.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae P1031] gi|301799335|emb|CBW31870.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae OXC141] Length = 197 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 96/206 (46%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYAYLKGIITKITAKYIVLETNGIGYILHV-ANPYAYSGQVNQEDQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + + ++ + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVVAGDDLPAKVA------VQASAENQELEEAMEAMLALGYKATE---- 169 Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205 + + K + D I+ AL+ + Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195 >gi|306828753|ref|ZP_07461945.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus mitis ATCC 6249] gi|304428931|gb|EFM32019.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus mitis ATCC 6249] Length = 197 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 97/206 (47%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYEYLKGIITKITAKYIVLEANGIGYILHV-ANPYAYSGQVNQETQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + S + ++ + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVVASDDLPSKVA------VQTSAENQELEEAMEAMLALGYKATE---- 169 Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205 + + K + D I+ AL+ + Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195 >gi|302866772|ref|YP_003835409.1| Holliday junction DNA helicase RuvA [Micromonospora aurantiaca ATCC 27029] gi|315503187|ref|YP_004082074.1| holliday junction DNA helicase ruva [Micromonospora sp. L5] gi|302569631|gb|ADL45833.1| Holliday junction DNA helicase RuvA [Micromonospora aurantiaca ATCC 27029] gi|315409806|gb|ADU07923.1| Holliday junction DNA helicase RuvA [Micromonospora sp. L5] Length = 200 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 54/206 (26%), Positives = 100/206 (48%), Gaps = 11/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + D+ +++V G+ + C TL+ L ++G L +R+D + L Sbjct: 1 MIASVRGTVTATGPDHAVVEVGGIGLAVQCAPGTLADL-RVGQPARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +Q F LLQ+ GVG R+A VL+ T + ++I ++ + ++PGI K Sbjct: 60 YGFADDDAKQLFELLQTASGVGPRLAQAVLAVHTPDAVRKAIANADTAALTRVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ + + V + A + ++ ALV LG+ QA A Sbjct: 120 AERLVLELRDRVGPV---------PVGADGAAGVTAGAWPEQVRQALVGLGWTAGQAEQA 170 Query: 181 VVSVLKK-EKNIADDSQIIRLALRAI 205 V +V + + +++ A+R + Sbjct: 171 VAAVAETVDGETPPVPVLLKQAIRLL 196 >gi|322375071|ref|ZP_08049585.1| holliday junction DNA helicase RuvA [Streptococcus sp. C300] gi|321280571|gb|EFX57610.1| holliday junction DNA helicase RuvA [Streptococcus sp. C300] Length = 197 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 46/206 (22%), Positives = 95/206 (46%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYEYLKGIITKITAKYIVLEANGIGYILHV-ANPYAYSGQVNQEAQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK V + K + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKV------VVASDALPAKVAVQASAENQELEEAMEAMLALGYKATE---- 169 Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205 + + K + D I+ AL+ + Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195 >gi|289178595|gb|ADC85841.1| RuvA [Bifidobacterium animalis subsp. lactis BB-12] Length = 232 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 58/210 (27%), Positives = 100/210 (47%), Gaps = 12/210 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG +KG +E + ++DV GV + + P L+ + +G ++ + QD I L Sbjct: 26 MIGMLKGRVESVDTSNAVVDVHGVGFELRMPSNDLTAM-HMGQDVKIYTSMSVSQDAITL 84 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL ++ F+ LQ V GVG +VA+ +LS + +L ++I + K +++ PG+ K Sbjct: 85 FGFLDARSKRMFLQLQKVSGVGPKVALSLLSTLAPDDLAQAIHDGDDKALSRAPGLGRKG 144 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELKG S+ + + L++LG+ Q A A Sbjct: 145 AQKIILELKG------SIDVDKIETGEPTSTQRIPTDKGVEQVVEGLMSLGWKQADAQQA 198 Query: 181 VVSVLKKEKNIADDSQ-----IIRLALRAI 205 V SV+ + ++RLAL ++ Sbjct: 199 VDSVISSSGIALPLEEGNVPTVLRLALTSL 228 >gi|225860211|ref|YP_002741720.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae Taiwan19F-14] gi|298230115|ref|ZP_06963796.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255022|ref|ZP_06978608.1| Holliday junction DNA helicase RuvA [Streptococcus pneumoniae str. Canada MDR_19A] gi|298501981|ref|YP_003723921.1| crossover junction endoribonuclease subunit A [Streptococcus pneumoniae TCH8431/19A] gi|254767394|sp|C1CP48|RUVA_STRZT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|225726584|gb|ACO22435.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae Taiwan19F-14] gi|298237576|gb|ADI68707.1| crossover junction endoribonuclease subunit A [Streptococcus pneumoniae TCH8431/19A] gi|327390587|gb|EGE88927.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae GA04375] Length = 197 Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 96/206 (46%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYAYLKGIITKITAKYIVLETNGIGYILHV-ANPYAYSGQVNQEDQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + + ++ + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVVAGDDLPAKIA------VQASAENQELEEAMEAMLALGYKATE---- 169 Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205 + + K + D I+ AL+ + Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195 >gi|213163229|ref|ZP_03348939.1| Holliday junction DNA helicase motor protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 174 Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 45/175 (25%), Positives = 80/175 (45%), Gaps = 3/175 (1%) Query: 30 CPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGV 89 P+ L + G +F +R+D L+GF + +R F L GVG ++A+ + Sbjct: 1 MPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIKTNGVGPKLALAI 60 Query: 90 LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKE 149 LS ++A + V ++ + + ++PGI K A R++ E+K + L + + Sbjct: 61 LSGMSAQQFVNAVEREELGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTPAVDLVLT 120 Query: 150 QAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204 + A++ALV LGY +A+ V + + A +IR ALRA Sbjct: 121 SPASPTSEDAEQEAVAALVALGYKPQEASRMVSKIAR---PDASSETLIRDALRA 172 >gi|290961821|ref|YP_003493003.1| Holliday junction DNA helicase [Streptomyces scabiei 87.22] gi|260651347|emb|CBG74469.1| holliday junction DNA helicase [Streptomyces scabiei 87.22] Length = 201 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 54/209 (25%), Positives = 93/209 (44%), Gaps = 14/209 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L D +++V G+ + C TLS L + G L +R+D + L Sbjct: 1 MIAFVSGPVAALAPDSAVVEVGGIGIAVQCTPNTLSGL-RRGQQAKLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ D +RQ F LLQ+ GVG R+A +L+ T L ++ + K + +PGI + Sbjct: 60 YGFVDDDERQVFELLQTASGVGPRLAQAMLAVHTPDALRRAVATADEKALIAVPGIGKRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD---QA 177 A +++ ELK + V + +AL+ LGY +A Sbjct: 120 AQKLLLELKDRLGE----------PVGAPAVGTPVTQGWRDQLHAALIGLGYATREADEA 169 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 AV + Q+++ AL+ ++ Sbjct: 170 VAAVAPQAEAAPGTPQVGQLLKAALQTLN 198 >gi|332712357|ref|ZP_08432284.1| holliday junction DNA helicase subunit RuvA [Lyngbya majuscula 3L] gi|332348831|gb|EGJ28444.1| holliday junction DNA helicase subunit RuvA [Lyngbya majuscula 3L] Length = 211 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 53/215 (24%), Positives = 93/215 (43%), Gaps = 14/215 (6%) Query: 1 MIGKIKGNIEGLYEDY-----VLIDVQGVCYIIYCPIRTLSCLGKIGDF--CTLFVETHM 53 MI +KG + + + +++DV + Y I R L +F + Sbjct: 1 MISYLKGTVASIQKSTGNRVTLILDVNYIGYEIQITRRLSQELPVALSEKTVQIFTHLQI 60 Query: 54 RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113 R++Q L+GF S +R F L SV G+GA++A+ +L + LV++I+ N + +++ Sbjct: 61 REEQQVLYGFASAAERDLFRQLVSVNGIGAQLAIALLDTLGLPNLVQAIVTGNIRALSKT 120 Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 PG+ K A RI ELK K V + + P + L+ LGY Sbjct: 121 PGVGSKTAERIALELKTKLAQWHKVSEVESPLSAN-----GLSPGIQEDVEMTLLALGYE 175 Query: 174 QDQATTAVVSVLKKE--KNIADDSQIIRLALRAIS 206 D+ A+ ++ + + IR A+ +S Sbjct: 176 NDEIAQALHAISEDTQVAKSKNAEDWIREAIAWLS 210 >gi|183601646|ref|ZP_02963016.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium animalis subsp. lactis HN019] gi|219683820|ref|YP_002470203.1| Holliday junction DNA helicase RuvA [Bifidobacterium animalis subsp. lactis AD011] gi|241190856|ref|YP_002968250.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196262|ref|YP_002969817.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium animalis subsp. lactis DSM 10140] gi|254766944|sp|B8DUE8|RUVA_BIFA0 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|183219252|gb|EDT89893.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium animalis subsp. lactis HN019] gi|219621470|gb|ACL29627.1| Holliday junction DNA helicase RuvA [Bifidobacterium animalis subsp. lactis AD011] gi|240249248|gb|ACS46188.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250816|gb|ACS47755.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793845|gb|ADG33380.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium animalis subsp. lactis V9] Length = 207 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 58/210 (27%), Positives = 100/210 (47%), Gaps = 12/210 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG +KG +E + ++DV GV + + P L+ + +G ++ + QD I L Sbjct: 1 MIGMLKGRVESVDTSNAVVDVHGVGFELRMPSNDLTAM-HMGQDVKIYTSMSVSQDAITL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL ++ F+ LQ V GVG +VA+ +LS + +L ++I + K +++ PG+ K Sbjct: 60 FGFLDARSKRMFLQLQKVSGVGPKVALSLLSTLAPDDLAQAIHDGDDKALSRAPGLGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELKG S+ + + L++LG+ Q A A Sbjct: 120 AQKIILELKG------SIDVDKIETGEPTSTQRIPTDKGVEQVVEGLMSLGWKQADAQQA 173 Query: 181 VVSVLKKEKNIADDSQ-----IIRLALRAI 205 V SV+ + ++RLAL ++ Sbjct: 174 VDSVISSSGIALPLEEGNVPTVLRLALTSL 203 >gi|297566125|ref|YP_003685097.1| Holliday junction DNA helicase RuvA [Meiothermus silvanus DSM 9946] gi|296850574|gb|ADH63589.1| Holliday junction DNA helicase RuvA [Meiothermus silvanus DSM 9946] Length = 193 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 99/205 (48%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ +KG E+ V++ V G ++CP TL+ L + G+ L + +R+D + L Sbjct: 1 MVRYLKGTALRKTENSVILLVGGFGLEVFCPTTTLTHLPEEGE-IALHTKLVVREDDLSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + F +L V GVG +V + +LS ++ L ++ + +++ G+ K+ Sbjct: 60 YGFADQRSLELFEMLLGVSGVGPKVGLNLLSSLSPALLARALADGDIRLLTGAQGVGRKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI EL+GK +A A ALV LG+ ++Q +A Sbjct: 120 AERIALELRGKVP-----------PHLMGEAGPILRRPQTEEAELALVTLGFRENQVRSA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++++ A +IIRLAL+A+ Sbjct: 169 VAQIVQQNPE-ASTQEIIRLALKAL 192 >gi|295398601|ref|ZP_06808633.1| crossover junction ATP-dependent DNA helicase RuvA [Aerococcus viridans ATCC 11563] gi|294973202|gb|EFG48997.1| crossover junction ATP-dependent DNA helicase RuvA [Aerococcus viridans ATCC 11563] Length = 210 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 52/210 (24%), Positives = 95/210 (45%), Gaps = 8/210 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGD--FCTLFVETHMRQDQI 58 M + G +E +Y D V+++ G+ Y IY KIG +++ + ++ I Sbjct: 1 MYEFMIGQVESVYPDAVILETGGIGYYIYM-ANPYRFTDKIGQDRPVKIWLYQSVSENDI 59 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 RL+GF S ++ F+ L SV G+G + A+ +LS LV +I +++ + + PG+ Sbjct: 60 RLYGFKSQEEKIIFLQLISVSGIGPKSALSILSLDDNAGLVAAIQAEDNAFLMKFPGVGK 119 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNK---EQAHICSMPSFAINAISALVNLGYGQD 175 K A +I+ +LK K + + + Q F A+ +LGY Q Sbjct: 120 KTAGQIVLDLKEKLPKVLAESPSSALFKQESLDIQGPDQVNLPFMHELEEAMASLGYSQR 179 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + V + + ++ IR+AL+ I Sbjct: 180 EINRVVKNA--DFTGVTATAEAIRIALKFI 207 >gi|306826018|ref|ZP_07459354.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431734|gb|EFM34714.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 197 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 97/206 (47%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYEYLKGIITKITAKYIVLEANGIGYILHV-ANPYAYSGQVNQENQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + S + ++ + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVVASDDLPAKVA------VQASNENQELEEAMEAMLALGYKATE---- 169 Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205 + + K + D I+ AL+ + Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195 >gi|310778214|ref|YP_003966547.1| Holliday junction DNA helicase subunit RuvA [Ilyobacter polytropus DSM 2926] gi|309747537|gb|ADO82199.1| Holliday junction DNA helicase subunit RuvA [Ilyobacter polytropus DSM 2926] Length = 199 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 93/205 (45%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + +Y ++D+ G+ Y + ++T L +G+ L++ ++R+D +L Sbjct: 1 MFEYLKGELTLKKLEYAVVDINGIGYKVNISLKTYEKLV-LGEKTKLYIYNYIREDMFKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF + +R F +L +V G+G +A+ +LS ++ + + ++ K++ ++P + +K Sbjct: 60 IGFAEEKERNLFEILINVNGIGVSLALAILSTFDVEDMRDIVSREDVKLLTKVPKLGIKK 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ++K K L S +K AL +LGY + Sbjct: 120 AQKLIVDVKDKLKGLQLEEGASGSTASK-------GIQIEEELYMALESLGYSKKDIEKL 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ I+ L+ I Sbjct: 173 VTR--EEIMAYEGIEAAIKDVLKKI 195 >gi|269122262|ref|YP_003310439.1| Holliday junction DNA helicase RuvA [Sebaldella termitidis ATCC 33386] gi|268616140|gb|ACZ10508.1| Holliday junction DNA helicase RuvA [Sebaldella termitidis ATCC 33386] Length = 205 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 103/206 (50%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I+G + DYV ++V G+ Y I+ ++T L + D LF+ T++++D L Sbjct: 1 MFEYIRGELTVKKIDYVALEVNGIAYKIFISLKTYDMLTE--DTEKLFIYTNVKEDDFSL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ +R+ F L S+ GVG ++ + +LS E+++ +I +N+K++ ++PG+ K Sbjct: 59 YGFKTESERELFKALVSISGVGPKLGLAILSTFNTQEVIDIVIEENAKLLVRVPGLGQKK 118 Query: 121 ASRIMTELKGKAISLSSV-VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +++ +LK K L+ + + QD S + AL +LGY + Sbjct: 119 AQKLIVDLKDKVKKLNVIGIAQDGSHDTASSVSSTKALIMKEDLKLALESLGYSNADVSK 178 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + ++ + IR L+ I Sbjct: 179 WIKD--EEIEKYERVEDAIRDILKKI 202 >gi|212696229|ref|ZP_03304357.1| hypothetical protein ANHYDRO_00765 [Anaerococcus hydrogenalis DSM 7454] gi|212676858|gb|EEB36465.1| hypothetical protein ANHYDRO_00765 [Anaerococcus hydrogenalis DSM 7454] Length = 197 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 100/205 (48%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G I+ + E+ +I+ + Y+I T+ L +I + +F + ++R+D I L Sbjct: 1 MISYIIGEIKYIGEENFIIENNNMGYLINSSFNTIKTL-EINNEFKIFTKMNVREDDISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S + + F LL SV +G + A+ VLS + ++ +I+ + + + GI K Sbjct: 60 FGFSSKDELEVFELLTSVSTIGPKNAIAVLSTLNVDKIKFAIVNNDIDTLTKAKGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ EL K ++ +S + + A AL+NLGY ++ Sbjct: 120 ASRIILELVDKVKKMAINDDISIS-----EDSFTTSNKEIDVAREALINLGYQRNSIDKV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ + + +II+ AL+ + Sbjct: 175 LTTL---KDSDLSLEEIIKEALKKM 196 >gi|315174120|gb|EFU18137.1| Holliday junction DNA helicase RuvA [Enterococcus faecalis TX1346] Length = 230 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 88/206 (42%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + Y++++ G+ Y I GK+ L++ +R+D L Sbjct: 27 MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 85 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMK 119 FGF S ++Q F+ L SV G+G + + +++ + L+ +I ++ + + PG+ K Sbjct: 86 FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 145 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +++ +LKGK L S + + + A+ AL LGY + Sbjct: 146 TAQQMILDLKGKLGELESSEAAVAAMTAT--EVMTTSNQALAEALEALSALGYSDREIKR 203 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + + D + AL+ + Sbjct: 204 ITKQLEALGETTTDV--YLSNALKFM 227 >gi|332203341|gb|EGJ17408.1| holliday junction DNA helicase RuvA [Streptococcus pneumoniae GA47368] Length = 197 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 96/206 (46%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYAYLKGIITKITAKYIVLETNGIGYILHV-ANPYAYSGQVNQEDQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + + ++ + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVVAGDDLPVKVA------VKASAENQELEEAMEAMLALGYKATE---- 169 Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205 + + K + D I+ AL+ + Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195 >gi|19704439|ref|NP_604001.1| Holliday junction DNA helicase ruvA [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296328207|ref|ZP_06870738.1| crossover junction ATP-dependent DNA helicase RuvA [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|22001978|sp|Q8REJ7|RUVA_FUSNN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|19714701|gb|AAL95300.1| Holliday junction DNA helicase ruvA [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296154719|gb|EFG95505.1| crossover junction ATP-dependent DNA helicase RuvA [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 194 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 100/205 (48%), Gaps = 15/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G +E DY+ ID+ GV Y +Y P+R + ++G+ L++ H+++D +L Sbjct: 1 MFEYLYGTVEYKKMDYIAIDINGVGYRVYFPLREYEKI-EVGNKYKLYIYNHIKEDTYKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GFL + DR+ F LL + G+G+ +A+ VLS + +++E I + + Q+P + K Sbjct: 60 IGFLDERDRKIFELLLKINGIGSSLALAVLSNFSYNKIIEIISKNDYTTLRQVPKLGEKK 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A I+ +LKGK +L+ ++ +S + + AL LGY + + Sbjct: 120 AQIIILDLKGKLKNLTYTEEETVSM------------DMLEDLVLALEGLGYNKKEIDKT 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + I+ L+ + Sbjct: 168 LEKI--DLNKFSSLEDAIKGILKNM 190 >gi|312866920|ref|ZP_07727133.1| Holliday junction DNA helicase RuvA [Streptococcus parasanguinis F0405] gi|311097703|gb|EFQ55934.1| Holliday junction DNA helicase RuvA [Streptococcus parasanguinis F0405] Length = 197 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 96/206 (46%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ Y+++ + GK+ +++ +R+D L Sbjct: 1 MYEYIKGILTKITAKYIVVETAGIGYLLHV-ANPYAYSGKMNQEVHVYLHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFATEEEKQLFLNLISVSGIGPVSALAIIAADDNAGLVQAIESKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + +A + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKI------NLDLEDAPAQSKAKVAEENQALEEAMEAMLALGYKATE---- 169 Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205 + + K + +D I+ AL+ + Sbjct: 170 LKKIKKFFEGTSDTAENYIKSALKML 195 >gi|313206325|ref|YP_004045502.1| holliday junction DNA helicase subunit ruva [Riemerella anatipestifer DSM 15868] gi|312445641|gb|ADQ81996.1| Holliday junction DNA helicase subunit RuvA [Riemerella anatipestifer DSM 15868] gi|315023191|gb|EFT36202.1| Holliday junction DNA helicase RuvA [Riemerella anatipestifer RA-YM] gi|325336230|gb|ADZ12504.1| Holliday junction resolvasome, DNA-binding subunit [Riemerella anatipestifer RA-GD] Length = 194 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 98/205 (47%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G ++ L +++I+ GV Y + + T S IG ++ + +R+D L Sbjct: 1 MIYSLRGIVQELSPTHLIIETGGVGYFVSVSVNT-SKHFSIGKESLIYTQQIIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +++ F LL SV GVG AM +LS + E+ ++I+ NS V+ ++ GI K Sbjct: 60 YGFSELKEKEMFNLLISVNGVGPASAMIMLSSLELREIAQAILSSNSAVLQKVKGIGTKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K + + + ++ ++SAL LG + + Sbjct: 120 AQRIIIDLKDKVLHFGADESDISTVID---------NKVKEESLSALEVLGIPKKMSEKL 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 +LK+ I +++ L+ I Sbjct: 171 ANKILKQNPEIQT-EDLVKQILKNI 194 >gi|322390453|ref|ZP_08063973.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus parasanguinis ATCC 903] gi|321142852|gb|EFX38310.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus parasanguinis ATCC 903] Length = 197 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 95/206 (46%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ Y+++ + GK+ +++ +R+D L Sbjct: 1 MYEYIKGILTKITAKYIVVETAGIGYLLHV-ANPYAYSGKMNQEVQVYLHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFATEEEKQLFLNLISVSGIGPVSALAIIAADDNAGLVQAIESKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + +A + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKI------NLDLEDAPAQSKAKVAEENQALEEAMEAMLALGYKATE---- 169 Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205 + + K + D I+ AL+ + Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195 >gi|295107077|emb|CBL04620.1| Holliday junction DNA helicase subunit RuvA [Gordonibacter pamelaeae 7-10-1-b] Length = 199 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 99/205 (48%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + G IDV GV Y + +LS L + G + +R D I L Sbjct: 1 MIAFLKGRLAGKTAAAAFIDVNGVGYAVGMSQASLSKLPEAGASVEVHTYLQVRDDAIAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ ++ F L V GVG +VA+ LS T LV +I Q+ +++IPG+ K Sbjct: 61 YGFMTVEEKALFERLIGVGGVGPKVALAALSVFTPQALVAAIAAQDVAAVSKIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ ELKG S+ Q S ++ +A A AL+++G+ +A A Sbjct: 121 ASRIILELKG------SLDQGLASLFDEGEAPAARAAEQLRGAHEALLSMGFTAAEADLA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 LK DS +++ AL+ + Sbjct: 175 ----LKGAPEGVSDSAVLQYALKRL 195 >gi|293364377|ref|ZP_06611103.1| crossover junction endoribonuclease subunit A [Streptococcus oralis ATCC 35037] gi|307702657|ref|ZP_07639609.1| holliday junction DNA helicase RuvA [Streptococcus oralis ATCC 35037] gi|331267168|ref|YP_004326798.1| Holiday junction DNA helicase RuvA [Streptococcus oralis Uo5] gi|291317223|gb|EFE57650.1| crossover junction endoribonuclease subunit A [Streptococcus oralis ATCC 35037] gi|307623773|gb|EFO02758.1| holliday junction DNA helicase RuvA [Streptococcus oralis ATCC 35037] gi|326683840|emb|CBZ01458.1| Holiday junction DNA helicase RuvA [Streptococcus oralis Uo5] Length = 197 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 97/206 (47%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++++ G+ YI++ + G++ ++V +R+D L Sbjct: 1 MYEYLKGIITKITAKYIILEANGIGYILHV-ANPYAYSGQVNQETQIYVHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRSEDEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + S + ++ + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVVASDDLPSKVA------VQTSAENQELEEAMEAMLALGYKATE---- 169 Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205 + + K + D I+ AL+ + Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195 >gi|296875591|ref|ZP_06899662.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus parasanguinis ATCC 15912] gi|296433388|gb|EFH19164.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus parasanguinis ATCC 15912] Length = 197 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 96/206 (46%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ Y+++ + GK+ +++ +R+D L Sbjct: 1 MYEYIKGILTKITAKYIVVETAGIGYLLHV-ANPYAYSGKMNQEVQVYLHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFATEEEKQLFLNLISVSGIGPVSALAIIAADDNAGLVQAIESKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + +A + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKI------NLDLEDAPAQSKAKVAEENQALEEAMEAMLALGYKATE---- 169 Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205 + + K + +D I+ AL+ + Sbjct: 170 LKKIKKFFEGTSDTAENYIKSALKML 195 >gi|110635507|ref|YP_675715.1| Holliday junction DNA helicase motor protein [Mesorhizobium sp. BNC1] gi|123161737|sp|Q11DH5|RUVA_MESSB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|110286491|gb|ABG64550.1| Holliday junction DNA helicase subunit RuvA [Chelativorans sp. BNC1] Length = 206 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 89/207 (42%), Positives = 133/207 (64%), Gaps = 3/207 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+KG ++ + ED+ ++DV GV Y+ +C R+LS LG +G TLF+ET++R+D IRL Sbjct: 1 MIGKLKGVLDEIGEDHCVVDVGGVGYVAHCSARSLSTLGSVGTPVTLFIETYVREDMIRL 60 Query: 61 FGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GF + L+R+WF LLQ +VQGVGA+VA+ VLS +T +EL +I L++ +A+ PG+ K Sbjct: 61 YGFRTVLEREWFRLLQNNVQGVGAKVALSVLSTLTPSELANAIALRDIATVARAPGVGRK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 +A RI+TELK KA + + + + P +A+SAL NLGY +D A Sbjct: 121 VAERIVTELKSKAPAFAGEAAGAIGLKQDLGEGVAPAP--VSDAVSALANLGYSRDIAAN 178 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV + LK AD +IRL L+ ++ Sbjct: 179 AVAAALKSAGEGADTGTLIRLGLKELA 205 >gi|6729740|pdb|1BVS|A Chain A, Ruva Complexed To A Holliday Junction. gi|6729741|pdb|1BVS|B Chain B, Ruva Complexed To A Holliday Junction. gi|6729742|pdb|1BVS|C Chain C, Ruva Complexed To A Holliday Junction. gi|6729743|pdb|1BVS|D Chain D, Ruva Complexed To A Holliday Junction. gi|6729744|pdb|1BVS|E Chain E, Ruva Complexed To A Holliday Junction. gi|6729745|pdb|1BVS|F Chain F, Ruva Complexed To A Holliday Junction. gi|6729746|pdb|1BVS|G Chain G, Ruva Complexed To A Holliday Junction. gi|6729747|pdb|1BVS|H Chain H, Ruva Complexed To A Holliday Junction Length = 203 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 54/208 (25%), Positives = 89/208 (42%), Gaps = 12/208 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +I+ G+ Y + L+ L + G L +R+D + L Sbjct: 1 MIFSVRGEVLEVALDHAVIEAAGIGYRVNATPSALATLNQ-GSQARLVTAMVVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F+ L SV GVG R+AM L+ A L +++ + + ++PGI + Sbjct: 60 YGFSDAENRDLFLALLSVSGVGPRLAMATLAVHDAAALRQALADSDVASLTRVPGIGRRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL K + + + + ALV LG+ QA A Sbjct: 120 AERIVLELADKV--------GPVGASGLTVGTAADGNAVRGSVVEALVGLGFAAKQAEEA 171 Query: 181 VVSVLKKE---KNIADDSQIIRLALRAI 205 VL E S +R AL + Sbjct: 172 TDQVLDGELGKDGAVATSSALRAALSLL 199 >gi|221194792|ref|ZP_03567849.1| holliday junction DNA helicase RuvA [Atopobium rimae ATCC 49626] gi|221185696|gb|EEE18086.1| holliday junction DNA helicase RuvA [Atopobium rimae ATCC 49626] Length = 211 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 51/209 (24%), Positives = 97/209 (46%), Gaps = 6/209 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDF-CTLFVETHMRQDQIR 59 MI ++ G + + V++DV GV Y + T + L + G+ T+ +R+D + Sbjct: 1 MIVQLTGTLLSVSPSLVVLDVNGVGYELGVSANTAASLPQAGEAGVTVLTRMVVREDAME 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF S +R F L+++ G+GA++A+ VLS T +L + ++ + Q+ G+ K Sbjct: 61 LYGFSSREERALFDRLRAISGIGAKLALSVLSTFTPQQLASVVASEDVTRMTQVAGLGKK 120 Query: 120 IASRIMTELKG---KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ EL K L ++V + + S AL+ +G+ + Sbjct: 121 KAGRMLVELSDVFAKDAELRNLVGLSGLSDTNVSGGLSAHTSLDDEVTEALLAMGFTSQE 180 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A A+ ++E + + ALR + Sbjct: 181 AALALEG--RQEAGALSIEKAMSYALRRL 207 >gi|254303051|ref|ZP_04970409.1| Holliday junction ATP-dependent DNA helicase ruvA [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323243|gb|EDK88493.1| Holliday junction ATP-dependent DNA helicase ruvA [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 194 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 51/205 (24%), Positives = 100/205 (48%), Gaps = 15/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G +E DY+ ID+ GV Y +Y P+R + ++G+ ++ H+++D +L Sbjct: 1 MFEYLYGTVEYKKMDYIAIDINGVGYRVYFPLREYEKI-EVGNKYKFYIYNHIKEDTYKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GFL + DR+ F LL + G+G+ +A+ VLS + +++E I + + Q+P + K Sbjct: 60 IGFLDERDRKIFELLLKINGIGSSLALAVLSNFSYNKIIEIISKNDYTTLRQVPKLGEKK 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A I+ +LKGK +L+ ++ +S + + AL LGY + + Sbjct: 120 AQIIILDLKGKLKNLTYTEEETVSM------------DMLEDLVLALEGLGYNKKEIDKT 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + + I+ L+ + Sbjct: 168 LEKI--DLSKFSSLEEAIKGILKNM 190 >gi|240173173|ref|ZP_04751831.1| Holliday junction DNA helicase RuvA [Mycobacterium kansasii ATCC 12478] Length = 195 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 53/194 (27%), Positives = 85/194 (43%), Gaps = 13/194 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+V+I+ GV Y + TL+ L + G L +R+D + L Sbjct: 1 MIAGVRGEVLEVALDHVVIEAAGVGYRVNATPSTLATL-RQGTEARLVTAMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F+ L SV GVG R+AM L+ A L ++ + + ++PGI + Sbjct: 60 YGFGDRETRDLFLTLLSVSGVGPRLAMATLAVHDAAALRRALADGDVAALTRVPGIGKRG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K + A + + + ALV LG+ QA A Sbjct: 120 AERMVLELRDKVGPAGA------------AAPALNGNAVRTPVVEALVGLGFAAKQAEEA 167 Query: 181 VVSVLKKEKNIADD 194 VL E Sbjct: 168 TDKVLAAEPGTTTS 181 >gi|126656681|ref|ZP_01727895.1| Holliday junction DNA helicase motor protein [Cyanothece sp. CCY0110] gi|126621901|gb|EAZ92609.1| Holliday junction DNA helicase motor protein [Cyanothece sp. CCY0110] Length = 212 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 49/214 (22%), Positives = 98/214 (45%), Gaps = 13/214 (6%) Query: 1 MIGKIKG---NIEGLYEDYV--LIDVQGVCYIIYCPIRTLSCLGKIG-DFCTLFVETHMR 54 MI +KG + + + +++V + Y I P + + + D +F ++ Sbjct: 1 MISYLKGSPIEVIKNTNNRIILVLEVNQIGYEIQIPSKLARDISQEKLDIIQVFTHLQIK 60 Query: 55 QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114 DQ L+GF + +R+ F L SV G+GA+ A+ ++ + ELV++I+ N ++++Q P Sbjct: 61 DDQQILYGFFTTAERELFRQLISVSGIGAQSAIALIDTLGLEELVQAIVTGNIRILSQTP 120 Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 GI K A RI EL+ K +V ++ + + L+ LGY Sbjct: 121 GIGKKTAERIALELRTKLSQWRKLVGVTVTSSSAM-----PSLEILEDIEMTLLALGYTN 175 Query: 175 DQATTAVVSVLKKE--KNIADDSQIIRLALRAIS 206 ++ A+ ++ + + + I+ A+ +S Sbjct: 176 EEINKAISTLSQDNLMLKNTNTEEWIKEAIAWLS 209 >gi|319947801|ref|ZP_08021995.1| Holliday junction DNA helicase RuvA [Dietzia cinnamea P4] gi|319438525|gb|EFV93451.1| Holliday junction DNA helicase RuvA [Dietzia cinnamea P4] Length = 199 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 98/205 (47%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + + D +++ GV +++ L+ L + G L E +R+D + L Sbjct: 1 MIASIRGTVAEIGLDRCVVETGGVGVLVHATPAALAGL-RRGAEGMLHTELVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S RQ F+ +Q+V GVG R+A+ +++ + L+ ++ + K + +PG+ + Sbjct: 60 YGFDSVDARQLFLTVQTVSGVGPRLALAIVATLEPEALIRALGTGDVKALTLVPGVGKRT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K + N AL LG+ +A Sbjct: 120 AERMVLELKDKVGPVPDGDAASSVVGNGRAPAAT-------EVADALEGLGFSAAEAEKT 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 +VL + ++ D +Q +RLAL+++ Sbjct: 173 ATAVLDSQPDL-DPAQALRLALKSL 196 >gi|294811584|ref|ZP_06770227.1| Holliday junction DNA helicase RuvA [Streptomyces clavuligerus ATCC 27064] gi|326440227|ref|ZP_08214961.1| Holliday junction DNA helicase RuvA [Streptomyces clavuligerus ATCC 27064] gi|294324183|gb|EFG05826.1| Holliday junction DNA helicase RuvA [Streptomyces clavuligerus ATCC 27064] Length = 204 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 53/209 (25%), Positives = 99/209 (47%), Gaps = 11/209 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L ++ V GV ++C TL+ L ++G+ L +R+D + L Sbjct: 1 MIAFVSGQVAALAPTTAVVAVGGVGMSVHCTPATLAGL-RVGEEARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A +L+ + L ++ + + + +PGI K Sbjct: 60 YGFADDDERQVFELLQTASGVGPRLAQAMLAVHSPDALRTAVAGGDERALTAVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ ELK + + + + S++ +AL+ LGY +A A Sbjct: 120 AQKLLLELKDRL-------GEPTGVPGARRGAAAAPASWSDQLHAALIGLGYAGREADEA 172 Query: 181 VVSVLKKEKNIADDSQ---IIRLALRAIS 206 V +V + Q +++ AL+ ++ Sbjct: 173 VAAVTPQAAAAGAAPQVGVLLKAALQTLN 201 >gi|260583653|ref|ZP_05851401.1| holliday junction DNA helicase RuvA [Granulicatella elegans ATCC 700633] gi|260158279|gb|EEW93347.1| holliday junction DNA helicase RuvA [Granulicatella elegans ATCC 700633] Length = 198 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 44/205 (21%), Positives = 90/205 (43%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + + Y++++ G+ Y I K+ + + ++ +R+D I L Sbjct: 1 MYEYLKGELVAIQPTYIVVENHGIGYQI-MFANPYRIQLKLNEVIRVELQQIVREDSITL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLSD +++ F L SV G+G + A+ +L+ ++++ N + + PG+ K Sbjct: 60 YGFLSDEEKELFQKLISVSGIGPKSAVSILANDDVNGFIQAVESGNITYLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK ++ + V + A AL+ LGY + T Sbjct: 120 AQQIVLDLKGKFTNIV------VEEVATPVVETATGIKQLEEAREALLGLGYSAKEITKV 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + +A + + Sbjct: 174 WKELEAAAPQ--TTQEALSIAFKLL 196 >gi|309807405|ref|ZP_07701368.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LactinV 01V1-a] gi|312872854|ref|ZP_07732916.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LEAF 2062A-h1] gi|312873710|ref|ZP_07733755.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LEAF 2052A-d] gi|325913741|ref|ZP_08176102.1| Holliday junction DNA helicase RuvA [Lactobacillus iners UPII 60-B] gi|308169327|gb|EFO71382.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LactinV 01V1-a] gi|311090708|gb|EFQ49107.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LEAF 2052A-d] gi|311091588|gb|EFQ49970.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LEAF 2062A-h1] gi|325476941|gb|EGC80092.1| Holliday junction DNA helicase RuvA [Lactobacillus iners UPII 60-B] Length = 194 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 99/205 (48%), Gaps = 14/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G + + Y+++DV GV Y +Y P + +FVE +R++ I L Sbjct: 1 MFEYLQGKVTIINPAYIVLDVVGVGYKLYTP-NPYQFI--ENKQYCIFVEQVVRENAITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ D+Q F+ L SV G+G + A+ +++ + L+ +I K + + PG+ K+ Sbjct: 58 YGFATNEDKQLFLKLISVSGIGPKSALAIMAAENSQSLMAAIEQGEIKYLTKFPGVGKKV 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK D+S + + + +AI AL LGY + Sbjct: 118 ASQIILDLKGKL---------DVSDQPQLELILDQDNPALKDAILALSALGYSNKEVEKI 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + K AD I+ AL+ + Sbjct: 169 KPKLEKLPNQSADL--YIKEALKLL 191 >gi|256371996|ref|YP_003109820.1| Holliday junction DNA helicase RuvA [Acidimicrobium ferrooxidans DSM 10331] gi|256008580|gb|ACU54147.1| Holliday junction DNA helicase RuvA [Acidimicrobium ferrooxidans DSM 10331] Length = 189 Score = 132 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 90/206 (43%), Gaps = 18/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + V+IDV GV Y ++ + L + D C L++ T +R D I L Sbjct: 1 MIGWLHGRVASAGRSPVVIDVAGVGYEVHVTA-PWATLLRRDDECELWIRTIVRADAIAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R+ F L V GVG ++A+G+L I EL +I ++ + I G+ K Sbjct: 60 YGFASQAEREAFDALIGVSGVGPQLALGILGGIEGDELWTAIATEDLGRLTAIAGVGPKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL A L+ V MS +AL LG+ + Sbjct: 120 AKRVVLELAPTAKRLAPVTGVPMS-------------QEVSALRAALGELGFRPGEIDAV 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V D +R AL+ ++ Sbjct: 167 VRRC----PGDLDFEAQVRWALKELA 188 >gi|257784697|ref|YP_003179914.1| Holliday junction DNA helicase RuvA [Atopobium parvulum DSM 20469] gi|257473204|gb|ACV51323.1| Holliday junction DNA helicase RuvA [Atopobium parvulum DSM 20469] Length = 210 Score = 132 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 53/208 (25%), Positives = 94/208 (45%), Gaps = 5/208 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDF-CTLFVETHMRQDQIR 59 MI ++ G + + ++DV GV Y + T + L + G+ T+ +R+D + Sbjct: 1 MIVQLTGTLVSVTPSVAVLDVNGVGYELGISASTAAALPQAGEAGVTVLTRMVVREDSME 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF S +R F L+++ GVG ++A+ VLS T +L + + + + G+ K Sbjct: 61 LFGFASREERALFDRLRAISGVGPKLALSVLSTFTPQQLAVIVATNDGNRLKSVSGLGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQ--QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 A R++ EL + + Q S + ++ S AI AL+ +G+ +A Sbjct: 121 KAERLIIELSDVFAKDTELKQLVGLTSPTDFASIPKPTVTSVESEAIEALLGMGFTSQEA 180 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 T A+ +E I ALR + Sbjct: 181 TLALEG--YEEVGAITIEAAIGYALRRL 206 >gi|259501311|ref|ZP_05744213.1| crossover junction endoribonuclease subunit A [Lactobacillus iners DSM 13335] gi|302190965|ref|ZP_07267219.1| Holliday junction DNA helicase RuvA [Lactobacillus iners AB-1] gi|309803578|ref|ZP_07697670.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LactinV 11V1-d] gi|309806006|ref|ZP_07700032.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LactinV 03V1-b] gi|309809677|ref|ZP_07703533.1| Holliday junction DNA helicase RuvA [Lactobacillus iners SPIN 2503V10-D] gi|315653062|ref|ZP_07905990.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus iners ATCC 55195] gi|325911914|ref|ZP_08174317.1| Holliday junction DNA helicase RuvA [Lactobacillus iners UPII 143-D] gi|329919608|ref|ZP_08276597.1| Holliday junction DNA helicase RuvA [Lactobacillus iners SPIN 1401G] gi|259167281|gb|EEW51776.1| crossover junction endoribonuclease subunit A [Lactobacillus iners DSM 13335] gi|308164326|gb|EFO66581.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LactinV 11V1-d] gi|308167609|gb|EFO69762.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LactinV 03V1-b] gi|308170037|gb|EFO72074.1| Holliday junction DNA helicase RuvA [Lactobacillus iners SPIN 2503V10-D] gi|315489597|gb|EFU79231.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus iners ATCC 55195] gi|325476216|gb|EGC79379.1| Holliday junction DNA helicase RuvA [Lactobacillus iners UPII 143-D] gi|328937413|gb|EGG33835.1| Holliday junction DNA helicase RuvA [Lactobacillus iners SPIN 1401G] Length = 194 Score = 132 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 99/205 (48%), Gaps = 14/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G + + Y+++DV GV Y +Y P + +FVE +R++ I L Sbjct: 1 MFEYLQGKVTIVNPAYIVLDVVGVGYKLYTP-NPYQFI--ENKQYCIFVEQVVRENAITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ D+Q F+ L SV G+G + A+ +++ + L+ +I K + + PG+ K+ Sbjct: 58 YGFATNEDKQLFLKLISVSGIGPKSALAIMAAENSQSLMAAIEQGEIKYLTKFPGVGKKV 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK D+S + + + +AI AL LGY + Sbjct: 118 ASQIILDLKGKL---------DVSDQPQLELILDQDNPALKDAILALSALGYSNKEVEKI 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + K AD I+ AL+ + Sbjct: 169 KPKLEKLPNQSADL--YIKEALKLL 191 >gi|29833376|ref|NP_828010.1| Holliday junction DNA helicase RuvA [Streptomyces avermitilis MA-4680] gi|44888446|sp|Q820F4|RUVA_STRAW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|29610499|dbj|BAC74545.1| putative Holliday junction DNA helicase subunit B [Streptomyces avermitilis MA-4680] Length = 203 Score = 132 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 54/209 (25%), Positives = 94/209 (44%), Gaps = 12/209 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L D +++V G+ + C TLS L ++G L +R+D + L Sbjct: 1 MIAFVSGPVAALAPDSAVVEVGGIGIAVQCTPNTLSGL-RMGREAKLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ D +RQ F LLQ+ GVG R+A +L+ T L ++ + K + +PGI K Sbjct: 60 YGFVDDDERQVFELLQTASGVGPRLAQAMLAVHTPDALRRAVSTGDEKALVAVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD---QA 177 A +++ ELK + + + +AL+ LGY +A Sbjct: 120 AQKLLLELKDRLGEPLGTGGPAIG--------RAVTTGWREQLHAALIGLGYATREADEA 171 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 AV + Q+++ AL+ ++ Sbjct: 172 VAAVAPQAEAAGGTPQVGQLLKAALQTLN 200 >gi|268318974|ref|YP_003292630.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus johnsonii FI9785] gi|262397349|emb|CAX66363.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus johnsonii FI9785] Length = 192 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 93/205 (45%), Gaps = 16/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + + Y+++DV GV Y I CP ++VE +R I L Sbjct: 1 MFEYLKGIVTKIDPAYIVLDVNGVGYKILCPTPYSY---DENQPAAIYVEQVVRDTGITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS D++ F+ L SV G+G + A+ +++ L +I K + + PG+ K Sbjct: 58 YGFLSLEDKELFLKLLSVSGIGPKSAVAIMAAEDTDSLASAIQNGEVKYLTRFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK K+ + +A+ ALV LGY Q + Sbjct: 118 ASQIVLDLKGKLGDY-----------VKKSTAAADLTPSLQDALLALVALGYTQKEVDRI 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + K +N AD ++ AL + Sbjct: 167 TPKLAKLPENTADG--YVKEALALL 189 >gi|313884201|ref|ZP_07817967.1| Holliday junction DNA helicase RuvA [Eremococcus coleocola ACS-139-V-Col8] gi|312620648|gb|EFR32071.1| Holliday junction DNA helicase RuvA [Eremococcus coleocola ACS-139-V-Col8] Length = 201 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 95/205 (46%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I+G + ++ Y+++ G+ Y IY + + + +++E +R+D + L Sbjct: 1 MYEYIQGILSQIHPTYLVVTASGLAYKIY-SPNAYAWNRHLNEEVQVYLELVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +++ F LL V +G + A+ +L+ T LV++I QN + + PG+ K Sbjct: 60 YGFKDMQEKELFNLLNRVSNIGPKSALSILALNDHTGLVQAIESQNVTYLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK V D + + Q S + AL LGY Q + A Sbjct: 120 AQQMILDLQGKLGDF---VANDGAELAPSQQASSSNQAQFDEVAEALAGLGYSQREI-KA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + ++ A + + A + + Sbjct: 176 IAKPMA-LQSFASTQEALSFAFKLL 199 >gi|307153472|ref|YP_003888856.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 7822] gi|306983700|gb|ADN15581.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 7822] Length = 209 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 52/214 (24%), Positives = 94/214 (43%), Gaps = 14/214 (6%) Query: 1 MIGKIKGNIEGLYED-----YVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMR 54 MI +KG +++ ++++V + Y I P R L +F +R Sbjct: 1 MINYLKGKTIQIHKTATNRLQLILEVNQIGYEIQIPSRLARKLTLDDDQTIQIFTHLQIR 60 Query: 55 QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114 +DQ L+GF + +R F L SV GVGA+ A+ ++ + ELV +I+ N + +A+ P Sbjct: 61 EDQQILYGFATSEERDLFRQLISVSGVGAQSAIALIDTLGLEELVRAIMSNNGRTLAKSP 120 Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 GI K A RI+ ELK K + L+ LGY Sbjct: 121 GIGPKTAERILLELKTKVSQWQPQGLKTSVSAG------LPRKEILEEVEMTLLALGYSD 174 Query: 175 DQATTAVVSVLKKEK--NIADDSQIIRLALRAIS 206 ++ T A+ ++ + + ++ + ++ A+ +S Sbjct: 175 EEITGAISAISQDNQLLKNSNIEEWLKSAITLLS 208 >gi|312875156|ref|ZP_07735169.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LEAF 2053A-b] gi|311089263|gb|EFQ47694.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LEAF 2053A-b] Length = 194 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 99/205 (48%), Gaps = 14/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G + + Y+++DV GV Y +Y P + +FVE +R++ I L Sbjct: 1 MFEYLQGKVTIVNPAYIVLDVVGVGYKLYTP-NPYQFI--ENKQYCIFVEQVVRENAITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ D+Q F+ L SV G+G + A+ +++ + L+ +I K + + PG+ K+ Sbjct: 58 YGFATNEDKQLFLKLISVSGIGPKSALAIMAAENSQSLMAAIEQGEIKYLTKFPGVGKKV 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK D+S + + + +AI AL LGY + Sbjct: 118 ASQIILDLKGKL---------DVSDQPQLELILDQDNPALKDAILALSALGYSNKEVEKI 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + K AD I+ AL+ + Sbjct: 169 KPKLEKIPNQSADL--YIKEALKLL 191 >gi|298491329|ref|YP_003721506.1| Holliday junction DNA helicase RuvA ['Nostoc azollae' 0708] gi|298233247|gb|ADI64383.1| Holliday junction DNA helicase RuvA ['Nostoc azollae' 0708] Length = 212 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 59/213 (27%), Positives = 94/213 (44%), Gaps = 14/213 (6%) Query: 1 MIGKIKGNIE---GLYEDYVLI--DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55 MI +KG + + + V++ +V G+ Y + P R + L GD +F +R+ Sbjct: 1 MISYLKGIVACIQAISSNRVILTLEVNGLGYDLQVPQRLANQLTTTGDVVQIFTHYQVRE 60 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 + L+GF S +R F L SV G+GA +A+ +L + ELV++II N++++ Q PG Sbjct: 61 EVPLLYGFSSPAERDLFRHLLSVTGIGAALAITLLDTLELPELVQAIIAANTQILIQAPG 120 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 + K A RI ELK K I A P L LGY Sbjct: 121 VGKKTAERICLELKSKLIEWR-------KSAAFFVATGGPAPGILEEVQMTLFALGYTAH 173 Query: 176 QATTAVVSVLKK--EKNIADDSQIIRLALRAIS 206 + + A+ V + A I+ A+ +S Sbjct: 174 EVSHALHVVSENIGLPKDAYVEDWIKQAIGHLS 206 >gi|325846722|ref|ZP_08169637.1| Holliday junction DNA helicase RuvA [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481480|gb|EGC84521.1| Holliday junction DNA helicase RuvA [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 197 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 100/205 (48%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G I+ + E+ +I+ + Y+I T+ L +I + +F + ++R+D I L Sbjct: 1 MISYIIGEIKYIGEENFIIENNNMGYLINSSFNTIKTL-EINNEFKIFTKMNVREDDISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S + + F LL SV +G + A+ VLS + ++ +I+ + + + GI K Sbjct: 60 FGFSSKDELEVFELLTSVSTIGPKNAIAVLSTLNVDKIKLAIVNNDIDTLTKAKGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ EL K ++ +S + + A AL+NLGY ++ Sbjct: 120 ASRIILELVDKVKKMAINDDISIS-----EDSFTTSNKEIDVAREALINLGYQRNSIDKV 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ + + +II+ AL+ + Sbjct: 175 LTTL---KDSDLSLEEIIKEALKKM 196 >gi|227875448|ref|ZP_03993589.1| Holliday junction DNA helicase motor protein [Mobiluncus mulieris ATCC 35243] gi|269977300|ref|ZP_06184273.1| holliday junction DNA helicase RuvA [Mobiluncus mulieris 28-1] gi|306818760|ref|ZP_07452482.1| crossover junction ATP-dependent DNA helicase RuvA [Mobiluncus mulieris ATCC 35239] gi|307701010|ref|ZP_07638035.1| Holliday junction DNA helicase RuvA [Mobiluncus mulieris FB024-16] gi|227844002|gb|EEJ54170.1| Holliday junction DNA helicase motor protein [Mobiluncus mulieris ATCC 35243] gi|269934603|gb|EEZ91164.1| holliday junction DNA helicase RuvA [Mobiluncus mulieris 28-1] gi|304648446|gb|EFM45749.1| crossover junction ATP-dependent DNA helicase RuvA [Mobiluncus mulieris ATCC 35239] gi|307614005|gb|EFN93249.1| Holliday junction DNA helicase RuvA [Mobiluncus mulieris FB024-16] Length = 193 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 93/205 (45%), Gaps = 16/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + D I G+ + TLS L + G ++ +R+D + L Sbjct: 1 MIALLKGQVVDKRIDRATILCGGLGLEFFATPNTLSTLNQ-GQDAEIYTCLVVREDALTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R+ F +L V+G+G ++A+ L+ ++ ++L ++ ++ + +IPG+ K Sbjct: 60 YGFDDFQQRETFQILIQVKGIGPKLALATLAVLSPSDLANAVANRDLTTLQRIPGVGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ E+ K + + V + + AL NLG+ Q QAT A Sbjct: 120 AERMSLEIGDKLGIVPTSVTTAATGGGFNATT----------VVEALTNLGWNQAQATEA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ D + +R AL+ + Sbjct: 170 VNAI-----EANDAATALREALQYL 189 >gi|319946048|ref|ZP_08020297.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus australis ATCC 700641] gi|319747856|gb|EFW00101.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus australis ATCC 700641] Length = 197 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 96/206 (46%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ Y+++ + GK+ +++ +R+D L Sbjct: 1 MYEYIKGILTKITAKYIVVETAGIGYLLHV-ANPYAYSGKMNQKVQVYLHQVVREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFATEEEKQLFLNLISVSGIGPVSALAIIAADDNAGLVQAIESKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + +A + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKI------NLDLEDAPAQSKAKVAEENQALEEAMEAMLALGYKATE---- 169 Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205 + + K + +D I+ AL+ + Sbjct: 170 LKKIKKFFEGTSDTAENYIKSALKML 195 >gi|227488786|ref|ZP_03919102.1| Holliday junction DNA helicase motor protein [Corynebacterium glucuronolyticum ATCC 51867] gi|227091208|gb|EEI26520.1| Holliday junction DNA helicase motor protein [Corynebacterium glucuronolyticum ATCC 51867] Length = 200 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 87/205 (42%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + +I+ GV Y TL+ L +G+ + + + + L Sbjct: 1 MIASLHGEVVAKSLTGGVIECGGVGYEFLATAATLAELP-LGEDGRVLTTMVIGEKVVTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +R F LQ VQG+G ++A+ L+ + +E+ ++ + K + IPG+ ++ Sbjct: 60 YGFAHDSERTMFSQLQGVQGLGPKLALACLNTYSPSEIAVAVANDDKKTLQAIPGVGARM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+++ L GK S + ++ALV LG+ +D A A Sbjct: 120 AAKMTAVLDGKLDEFIDSTATTSSAAEPVTGGSET-------VVAALVQLGFDEDSANHA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + D +R AL+ + Sbjct: 173 AAWAEESNPGG-DTGTNLRHALQYL 196 >gi|162447235|ref|YP_001620367.1| holliday junction DNA helicase RuvA [Acholeplasma laidlawii PG-8A] gi|189045740|sp|A9NF61|RUVA_ACHLI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|161985342|gb|ABX80991.1| holliday junction DNA helicase RuvA [Acholeplasma laidlawii PG-8A] Length = 186 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 100/205 (48%), Gaps = 21/205 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + +++++ GV Y++ P+ KIG+ T+ H+R+D +L Sbjct: 1 MYRYIKGIVTQINPQHIVVENNGVGYLVLSPVPYQY---KIGEETTVVTYLHVREDIFQL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + F+ L SV G+G + AM +++ +++ +I ++K + + PGI MK Sbjct: 58 YGFKDEETLNLFLKLISVSGIGPKSAMSIVAFDDTNKIIAAIETSDAKYLTKFPGIGMKS 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK ++ ++ + + + + +AL LGY + + + Sbjct: 118 AQQIILDLKGKLVN--------------DELDMQLLSDNSKDVAAALEALGYNKKEIAKS 163 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + V D ++ ++ AL + Sbjct: 164 LKHV----NFDQDLNKALKEALAIL 184 >gi|320547648|ref|ZP_08041933.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus equinus ATCC 9812] gi|320447723|gb|EFW88481.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus equinus ATCC 9812] Length = 197 Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 44/205 (21%), Positives = 85/205 (41%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + Y++++ G+ YII S + +++ +R+D L Sbjct: 1 MYDYIKGKLTKITAKYIVVEAGGLGYIINV-ANPYSFSDLMNQDVQIYLHQVVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ ++ F+ L SV G+G A+ +++ LV +I + + + + P I K Sbjct: 60 FGFHTEDEKAVFLNLISVSGIGPTTALAIIAVDDNEGLVTAIDNSDIRYLMKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L GK +S A+ AL+ LGY + Sbjct: 120 AQQVVLDLAGKFADVSMENGLASQA-------KAVANEQLEEAMEALLALGYKAAELKK- 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + E Q I+ +L+ + Sbjct: 172 IRKFF--EGTNETAEQYIKSSLKML 194 >gi|312870745|ref|ZP_07730852.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LEAF 3008A-a] gi|311093757|gb|EFQ52094.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LEAF 3008A-a] Length = 194 Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 100/205 (48%), Gaps = 14/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G + + Y+++DV GV Y +Y P + +FVE +R++ I L Sbjct: 1 MFEYLQGKVTIVNPAYIVLDVVGVGYKLYTP-NPYQFI--ENKQYCIFVEQVVRENAITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ D+Q F+ L SV G+G + A+ +++ + L+ +I K + + PG+ K+ Sbjct: 58 YGFATNEDKQLFLKLISVSGIGPKSALAIMAAENSQSLMAAIEQGEIKYLTKFPGVGKKV 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK D+S + + + +AI AL LGY + Sbjct: 118 ASQIILDLKGKL---------DVSDQPQLELILDQDNPALKDAILALSALGYSNKEVEK- 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + L+K N I+ AL+ + Sbjct: 168 IKPKLEKLPN-QSADHYIKEALKLL 191 >gi|222151527|ref|YP_002560683.1| holliday junction DNA helicase RuvA [Macrococcus caseolyticus JCSC5402] gi|254766967|sp|B9E719|RUVA_MACCJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|222120652|dbj|BAH17987.1| holliday junction DNA helicase RuvA [Macrococcus caseolyticus JCSC5402] Length = 193 Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 45/203 (22%), Positives = 91/203 (44%), Gaps = 14/203 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + +++I+V G+ Y P ++ TL + +R+D L Sbjct: 1 MYAYLKGKIMTILPTHLVIEVSGIGYECLTP-NPYRFNHQLDQMITLHTQLVVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F L V G+G + A+ +L+ T E++++I ++ + + PGI K Sbjct: 60 YGFKDEEEKAMFNALNKVTGIGPKSALAILATSTPQEIIKAIESESESYLIKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + ++ + + A+ A LGY + + T Sbjct: 120 ARQIILDLKGKL-----------TITDESELFKEVNDTLLNEALLAFEALGYSKREITKI 168 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 + KK + + ++ L+ Sbjct: 169 EKELKKK--QFSTVDEYVKQGLQ 189 >gi|330936721|gb|EGH40906.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. pisi str. 1704B] Length = 119 Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 68/119 (57%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G++ ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGSLAEKQPPHLVLDVNGVGYEVEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ K Sbjct: 61 YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGKK 119 >gi|327394173|dbj|BAK11595.1| Holliday junction DNA helicase RuvA [Pantoea ananatis AJ13355] Length = 175 Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 83/176 (47%), Gaps = 4/176 (2%) Query: 30 CPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGV 89 P+ L + +F + +R+D LFGF S +R F L V GVG ++A+ + Sbjct: 1 MPMTCFYELPDLNHEAVIFTQFVVREDAQLLFGFNSKQERALFRELIKVNGVGPKLALAI 60 Query: 90 LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVV-QQDMSCVNK 148 LS ++A + V ++ + + ++PG+ K A R++ E+K + + + D + Sbjct: 61 LSGMSAQQFVTAVEKEEIAALVKLPGVGKKTAERLVVEMKDRFKGMHGDLFGGDSAFTLT 120 Query: 149 EQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204 A++ALV+LGY +A+ + V + AD +IR ALRA Sbjct: 121 TPGPEPETNDAESEAVAALVSLGYKPQEASRMISKVGR---PDADCETLIREALRA 173 >gi|329769669|ref|ZP_08261073.1| Holliday junction DNA helicase RuvA [Gemella sanguinis M325] gi|328838424|gb|EGF88033.1| Holliday junction DNA helicase RuvA [Gemella sanguinis M325] Length = 192 Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 92/205 (44%), Gaps = 16/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG I + +++D G+ Y I L + +F+ +R+D L Sbjct: 1 MYAYIKGKISEINPTNIVVDNNGIGYEIVVANPYEYQLE---EEKQIFISQQVREDSNTL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F+LL V+GVG + A+ +L+ T+ E++ +I Q++ + + PGI K Sbjct: 58 YGFSTKEQKKVFLLLLKVKGVGPKSALAILAGATSEEIISAIEKQDAVYLTKFPGIGKKS 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +L+GK + + +A+ AL LGY + + T Sbjct: 118 AQQIILDLQGKVD-----------FAATASTPNNNANQYLKDALLALEALGYSKKELTKI 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + D ++ L+ + Sbjct: 167 EKKLSAFDYDGVDS--YVKQGLKLL 189 >gi|67922170|ref|ZP_00515685.1| DNA recombination protein, RuvA [Crocosphaera watsonii WH 8501] gi|67856070|gb|EAM51314.1| DNA recombination protein, RuvA [Crocosphaera watsonii WH 8501] Length = 210 Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 46/214 (21%), Positives = 97/214 (45%), Gaps = 13/214 (6%) Query: 1 MIGKIKGNIEGLYEDY-----VLIDVQGVCYIIYCPIRTLSCLGKIG-DFCTLFVETHMR 54 MI +KG + ++ ++++V + Y + P + + + + +F ++ Sbjct: 1 MISYLKGIPIEVIKNTNNRIILVLEVNKIGYELQIPSKLARDISQYDLENIQVFTYLQIK 60 Query: 55 QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114 +DQ L+GF + +R+ F L SV G+GA+ A+ ++ + ELV++I+ N + ++Q P Sbjct: 61 EDQQILYGFSTTAERELFRQLISVSGIGAQSAIALIDTLGLEELVQAIVTGNIRTLSQTP 120 Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 G+ K A RI EL+ K +V ++ + + L+ LGY Sbjct: 121 GVGKKTAERIALELRTKLSQWRKLVGGTVASSSAM-----PSLDILEDIEMTLLALGYTN 175 Query: 175 DQATTAVVSVLKKE--KNIADDSQIIRLALRAIS 206 ++ AV ++ + + I+ + +S Sbjct: 176 EEINKAVSTLSQDNLMLKNTSTEEWIKEVIAWLS 209 >gi|317495143|ref|ZP_07953513.1| Holliday junction DNA helicase RuvA [Gemella moribillum M424] gi|316914565|gb|EFV36041.1| Holliday junction DNA helicase RuvA [Gemella moribillum M424] Length = 192 Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 94/205 (45%), Gaps = 16/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG I + ++ID G+ Y I L + +++ +R+D L Sbjct: 1 MYAYIKGKISEINPTNIVIDNNGIGYEITVANPYEYQL---NEEKQIYISQQVREDSNTL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ F+LL V+GVG + A+ +L+ T+ E++ +I Q+ + + PGI K Sbjct: 58 YGFLTKEQKKVFLLLLKVKGVGPKSALAILAGATSEEIISAIEKQDVNYLTKFPGIGKKS 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +L+GK ++ + + + +A+ AL LGY + Sbjct: 118 AQQIILDLQGKIDFNTAANKTESLA-----------NLYIKDALLALEALGYSTKELAKI 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + K E + D ++ L+ + Sbjct: 167 ESRLAKFEFSAVD--DYVKQGLKLL 189 >gi|227484942|ref|ZP_03915258.1| possible crossover junction endoribonuclease subunit A [Anaerococcus lactolyticus ATCC 51172] gi|227237097|gb|EEI87112.1| possible crossover junction endoribonuclease subunit A [Anaerococcus lactolyticus ATCC 51172] Length = 196 Score = 131 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 103/205 (50%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG+++ + E+ +I+ + Y I + +LS + +I + ++ +R+D I L Sbjct: 1 MISYIKGDVKAINEEGFIIETNNIGYYINSTLTSLSNI-QINNEYKIYTSMQVREDDISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S + + F+LL SV +G ++A+G+LS I+A E+ +I+ + + GI K Sbjct: 60 YGFYSKDELEMFLLLISVSSIGPKIAIGMLSSISADEIKLAIVNNDIDKLTDAKGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ EL K ++ + ++K + + A AL NLGY ++ Sbjct: 120 ASRIILELVDKVKKMA------IPDLDKVEKVNPVKNNDIEVAREALKNLGYMENDVARV 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + +I+ +L+ + Sbjct: 174 LNELKDTD---LSLEGLIKESLKRL 195 >gi|194335574|ref|YP_002017368.1| Holliday junction DNA helicase RuvA [Pelodictyon phaeoclathratiforme BU-1] gi|229560112|sp|B4SCR7|RUVA_PELPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|194308051|gb|ACF42751.1| Holliday junction DNA helicase RuvA [Pelodictyon phaeoclathratiforme BU-1] Length = 200 Score = 131 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 54/202 (26%), Positives = 101/202 (50%), Gaps = 8/202 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G + + + V+++V G+ Y T L + G LF +R+D ++L Sbjct: 1 MFAYFRGKLTSVLPEEVVVEVSGIAYQFLISAATHRQLPEQGSEVFLFSHLVVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +RQ F LL GVG ++A+ +LS ++ ++ ++I+ + + I G+ K Sbjct: 61 YGFSGEEERQLFRLLLLTTGVGPKLALALLSGLSVQDIHDAILTNTPERLYGITGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ EL+ K + LS V S +A++ALV LG+ + A Sbjct: 121 AARIILELRDKVLKLSPVSALASPA-------RLSSTLLRDDAVNALVTLGFSRIIVQKA 173 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 VV++L++ + ++I+ AL Sbjct: 174 VVAILEQNPGL-TVEEVIKAAL 194 >gi|299535650|ref|ZP_07048971.1| Holliday junction ATP-dependent DNA helicase ruvA [Lysinibacillus fusiformis ZC1] gi|298728850|gb|EFI69404.1| Holliday junction ATP-dependent DNA helicase ruvA [Lysinibacillus fusiformis ZC1] Length = 206 Score = 131 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 40/196 (20%), Positives = 89/196 (45%), Gaps = 3/196 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + ++++++ QG+ + + P + ++V H+R+D L Sbjct: 1 MYDYLKGQITRITPEFIVLEQQGIGWQLNTPNPFAFRTSALEQQ--IYVHLHVREDAQVL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + R+ F L V G+G + A+ +L+ +++ +I ++ + + PG+ K Sbjct: 59 YGFPNLDQRELFRKLILVSGIGPKGALAILATGNPQQVISAIEREDEAFLVKFPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK SL ++ + + + A+ AL+ LGY + + Sbjct: 119 ARQMILDLKGKLGSLLDTLELPSAEDELPLFGVNAYKHELEEALLALMALGYSEKELEK- 177 Query: 181 VVSVLKKEKNIADDSQ 196 + L+ + Sbjct: 178 IKPQLEDNDKLETTDA 193 >gi|227542217|ref|ZP_03972266.1| Holliday junction DNA helicase motor protein [Corynebacterium glucuronolyticum ATCC 51866] gi|227182046|gb|EEI63018.1| Holliday junction DNA helicase motor protein [Corynebacterium glucuronolyticum ATCC 51866] Length = 200 Score = 131 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 87/205 (42%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + +I+ GV Y TL+ L +G+ + + + + L Sbjct: 1 MIASLHGEVVAKSLTGGVIECGGVGYEFLATAATLAELP-LGEDGRVLTTMVIGEKVVTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +R F LQ VQG+G ++A+ L+ + +E+ ++ + K + IPG+ ++ Sbjct: 60 YGFAHDSERTMFSQLQDVQGLGPKLALACLNTYSPSEIAVAVANDDKKTLQAIPGVGARM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+++ L GK S + ++ALV LG+ +D A A Sbjct: 120 AAKMTAVLDGKLDEFIDSTATTSSAAEPVTGGSET-------VVAALVQLGFDEDSANHA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + D +R AL+ + Sbjct: 173 AAWAEESNPGG-DTGTNLRHALQYL 196 >gi|260890744|ref|ZP_05902007.1| holliday junction DNA helicase RuvA [Leptotrichia hofstadii F0254] gi|260859622|gb|EEX74122.1| holliday junction DNA helicase RuvA [Leptotrichia hofstadii F0254] Length = 211 Score = 131 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 57/211 (27%), Positives = 102/211 (48%), Gaps = 8/211 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + DYV +D+ G+ Y +Y ++T L IG+ L+V T++++D I L Sbjct: 1 MFEYISGKLTIKKIDYVALDINGLAYKVYVSLKTFEKLDNIGNDEKLYVYTNVKEDDISL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F L S+ GVG ++ + +LS E+++ + SK+ ++PG+ +K Sbjct: 61 YGFKTQNERELFKALISISGVGPKLGIAILSTFNTREIIDIVNENESKIFTRVPGLGIKK 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS------FAINAISALVNLGYGQ 174 A +I+ +LK K L + I S S + AL +LGY Sbjct: 121 AQKIILDLKDKVKKLDLTETIEEISDISSGKLITSNTSNPKLLLMKEDLKLALESLGYIN 180 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + + K+ + D S+ I++ L+ I Sbjct: 181 SDVSKWITD--KELAQVKDISEAIKIILQKI 209 >gi|330896128|gb|EGH28349.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. japonica str. M301072PT] Length = 128 Score = 131 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 67/118 (56%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G++ ++++DV GV Y + P+ TL L +G+ TL +R+D L Sbjct: 1 MIGRLRGSLAEKQPPHLVLDVNGVGYEVEVPMTTLYRLPHVGETVTLHTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +GF +R+ F L + GVG ++A+ ++S + ELV + Q++ + +IPG+ Sbjct: 61 YGFYEKRERELFRELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSALTRIPGVGQ 118 >gi|184201011|ref|YP_001855218.1| Holliday junction DNA helicase RuvA [Kocuria rhizophila DC2201] gi|229560091|sp|B2GIL9|RUVA_KOCRD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|183581241|dbj|BAG29712.1| Holliday junction DNA helicase RuvA [Kocuria rhizophila DC2201] Length = 213 Score = 131 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 51/209 (24%), Positives = 92/209 (44%), Gaps = 14/209 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD-QIR 59 MI + G + + +++V G ++ RTLS L ++G L R+D Sbjct: 1 MIASVTGEVAFVGATLAVVEVSGFGIEVHASPRTLSGL-RVGATTRLHTAYIARKDEAPL 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF +++ F ++ V GVG R A+ +S + + +I + K +PGI K Sbjct: 60 LFGFAQGDEKEIFTVMLGVSGVGPRTALAAVSVLGPEDARRAIAAGDDKAFTAVPGIGPK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL K + + +QA+ +P + + AL LG+ + A Sbjct: 120 SARRIVLELADKLV---------LPEPPVQQANQPQVPVWRDQVVDALTGLGWSEKDAVR 170 Query: 180 AVVSVLKKEKNIAD---DSQIIRLALRAI 205 + L+ + + D ++I+R L + Sbjct: 171 GIEDALQTQPELGDSGNVAEILRAVLSWL 199 >gi|313679904|ref|YP_004057643.1| holliday junction DNA helicase subunit ruva [Oceanithermus profundus DSM 14977] gi|313152619|gb|ADR36470.1| Holliday junction DNA helicase subunit RuvA [Oceanithermus profundus DSM 14977] Length = 195 Score = 131 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 102/205 (49%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ ++G + ED ++ + G+ + ++CP TL L ++G+ L +R+D + L Sbjct: 1 MVRFLEGVVLEATEDRAIVSLHGLGFEVFCPTGTLGRL-RVGETARLHTRLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +WF LL V GVG RVA+G+LS + A L +++ + K++ PG+ K+ Sbjct: 60 YGFHDPRLLEWFDLLVGVSGVGPRVALGLLSALPADLLGQAVTGDDPKLLTAAPGVGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK + + + + + A + L+ LG+ + Q Sbjct: 120 AERIVLELKTRLPDHLAGLAPSAAPIENPAAGEAAAA---------LITLGFRETQVHAV 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + K+ A ++IRLALR + Sbjct: 171 VQKLAAKQPE-AGAEELIRLALREL 194 >gi|326803735|ref|YP_004321553.1| Holliday junction DNA helicase RuvA [Aerococcus urinae ACS-120-V-Col10a] gi|326651259|gb|AEA01442.1| Holliday junction DNA helicase RuvA [Aerococcus urinae ACS-120-V-Col10a] Length = 203 Score = 131 bits (329), Expect = 7e-29, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + L + V+++ G+ Y IY P + G +++ + QD IRL Sbjct: 2 MYQYIKGLLVDLTSEAVVVETAGLAYYIYFP-NPYRLSDQKGQQVQVWLYQAVSQDAIRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++Q F+ L SV G+G + A+ +L+ + +I +N K + + PG+ K Sbjct: 61 YGFFDQAEKQLFLQLISVSGIGPKSALSILAYGDQAGFIAAIESENVKFLTKFPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +L+ K L S + + + + I +AL +LGY + + Sbjct: 121 AQQIILDLQSKLSRLKS---EALPADQEVISDQSESSQMMIELEAALNSLGYAKREIDQV 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + + IR+ALR I Sbjct: 178 IKK--GDFSEVDNTADAIRVALRYI 200 >gi|315604284|ref|ZP_07879350.1| crossover junction ATP-dependent DNA helicase RuvA [Actinomyces sp. oral taxon 180 str. F0310] gi|315313990|gb|EFU62041.1| crossover junction ATP-dependent DNA helicase RuvA [Actinomyces sp. oral taxon 180 str. F0310] Length = 201 Score = 131 bits (329), Expect = 7e-29, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 93/205 (45%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + D+V + V G+ + ++ + + T+ +R+D + L Sbjct: 1 MISILRGTVASTGLDHVDVVVGGIGFRVHVTPACAQAMAR-DREITVHTSMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L +V G+G ++A+ L+ + +L ++ Q+ V+ +IPG+ K Sbjct: 60 YGFESSDERDVFAALMTVSGIGPKIALAALAVLRPDDLRRAVRDQDLAVLQRIPGVGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ E+ K S + ++ + + A ALV LG+ + QA A Sbjct: 120 AQRMALEIGDKLGS-----PAALPGAGPTRSAPPAEDAVAAEVRVALVGLGWSETQACAA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + S ++R AL + Sbjct: 175 IEKLA---GSGLGASDMLRAALVTL 196 >gi|78777407|ref|YP_393722.1| Holliday junction DNA helicase motor protein [Sulfurimonas denitrificans DSM 1251] gi|123727548|sp|Q30R94|RUVA_SULDN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|78497947|gb|ABB44487.1| Holliday junction DNA helicase subunit RuvA [Sulfurimonas denitrificans DSM 1251] Length = 188 Score = 131 bits (329), Expect = 7e-29, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 20/205 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + +V +DV GV Y ++ +++ S L G+ LF +R+D L Sbjct: 1 MIVGVRGVLVSKEPSFVHVDVGGVVYEVFISLQSFSALS--GNEVKLFTSHVIREDAQLL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL +++ F L + GVG +VAM + S T ++ + ++ + ++PGI K Sbjct: 59 YGFLELGEKKLFERLIKINGVGPKVAMAICSTYTPSQFAVVLNNKDITAVQRVPGIGPKS 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL G L + S A AL +LG+ +D+ + A Sbjct: 119 AGRILVELSGFDTELIISASEPKSL-------------AVAQASEALESLGFKKDKISKA 165 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + D + +++ AL+ + Sbjct: 166 L-----GSCSAVDTAILVKEALKLL 185 >gi|16127467|ref|NP_422031.1| Holliday junction DNA helicase RuvA [Caulobacter crescentus CB15] gi|221236280|ref|YP_002518717.1| Holliday junction DNA helicase RuvA [Caulobacter crescentus NA1000] gi|20455260|sp|Q9A3G7|RUVA_CAUCR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254766950|sp|B8H455|RUVA_CAUCN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|13424921|gb|AAK25199.1| Holliday junction DNA helicase RuvA [Caulobacter crescentus CB15] gi|220965453|gb|ACL96809.1| Holliday junction DNA helicase ruvA [Caulobacter crescentus NA1000] Length = 205 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 113/206 (54%), Gaps = 4/206 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ-IR 59 MIG+++G + + E+ LIDV GV Y++ C RTL L +G+ L +E+ + +R Sbjct: 1 MIGRLRGAVAEVGEEEALIDVMGVGYLVRCGHRTLQRLPALGEETLLHIESQWSESAGLR 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL+ DR+ F+LLQ++QGVG + AM VL ++ EL ++ ++ + + G+ K Sbjct: 61 LYGFLTREDRRAFVLLQAIQGVGPKAAMAVLDVLSPAELASAVAREDKAAVGRANGVGPK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 +A RI+TELK K I+ V+ MS + P+ +A++AL+ LG + A Sbjct: 121 LALRIVTELKDKPITDGPVL---MSAPTSSAPSAPAKPAPTGDAVAALMGLGVAEVNARR 177 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 V + + A +I+ L+ + Sbjct: 178 VVEAAAAELGEEATVQALIKAGLKEL 203 >gi|331701280|ref|YP_004398239.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus buchneri NRRL B-30929] gi|329128623|gb|AEB73176.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus buchneri NRRL B-30929] Length = 199 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 44/205 (21%), Positives = 89/205 (43%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G + + ++++ V GV Y+I +++ + I L Sbjct: 1 MFEFLEGTVVDITPTHIVLLVGGVGYLIN-TADPYRFNVDEKKVIRVYIYQSVSDTAILL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + D+Q F L SV G+G + A+ +L+ L+ +I ++ K + + PG+ K Sbjct: 60 FGFATIEDKQIFEKLISVSGIGPKSALAILAGNDRDGLITAINNEDVKFLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +++GK +++ + +A+SAL LGYG Q Sbjct: 120 ARQIILDMQGKLDDIATN-----GVSLAQPLGSNEKSPELADALSALEALGYGAKQIAAI 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 ++K+ + + L L+ + Sbjct: 175 EPDLVKQA--DLSTDEYLSLGLKLL 197 >gi|295099824|emb|CBK88913.1| Holliday junction DNA helicase subunit RuvA [Eubacterium cylindroides T2-87] Length = 193 Score = 130 bits (328), Expect = 8e-29, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 107/206 (51%), Gaps = 18/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + D V++DV GV Y ++ + KIGD L+ H+R+D + L Sbjct: 1 MIAFVSGIVRLIRTDSVVLDVHGVGYEVFISN---ALTQKIGDELFLYTYQHVREDAMLL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ D + FM L +V+G+G + A +L+ ++++++I + K++ +PGI K Sbjct: 58 YGFIKQEDYEVFMRLINVKGIGPKTAQTMLAVCPGSKMIQAIEEDDVKLLKSLPGIGAKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK +S+ + + + V K ALV LGY +Q + Sbjct: 118 ASQIVLDLKGKFVSVETKEETISNPVWK-------------ETQEALVALGYKVNQLSGV 164 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + K + ++++R+AL ++ Sbjct: 165 RKELA--NKTDLNVNEMLRMALAILA 188 >gi|126654019|ref|ZP_01725852.1| Holliday junction DNA helicase motor protein [Bacillus sp. B14905] gi|126589493|gb|EAZ83637.1| Holliday junction DNA helicase motor protein [Bacillus sp. B14905] Length = 206 Score = 130 bits (328), Expect = 8e-29, Method: Composition-based stats. Identities = 42/196 (21%), Positives = 89/196 (45%), Gaps = 3/196 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + +Y++++ QG+ + + P + ++V H+R+D L Sbjct: 1 MYDYLKGLITRITPEYIVLEQQGIGWQLNTPNPFAFRTSALEQQ--IYVHLHVREDAQML 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + R+ F L V G+G + A+ +L+ +++ +I ++ + + PG+ K Sbjct: 59 YGFPNLDQRELFRKLILVSGIGPKGALAILATGNPQQVISAIEREDEAFLVKFPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK SL ++ + + + AI AL+ LGY + + Sbjct: 119 ARQMILDLKGKLGSLLETIELPSTEDELPLFGVNAYKHELEEAILALMALGYSEKELEK- 177 Query: 181 VVSVLKKEKNIADDSQ 196 + L+ + Sbjct: 178 IRPQLEDNDKLETTDA 193 >gi|300774281|ref|ZP_07084145.1| crossover junction ATP-dependent DNA helicase RuvA [Chryseobacterium gleum ATCC 35910] gi|300506925|gb|EFK38059.1| crossover junction ATP-dependent DNA helicase RuvA [Chryseobacterium gleum ATCC 35910] Length = 194 Score = 130 bits (328), Expect = 8e-29, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 99/205 (48%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G ++ L Y +I+VQGV Y + + T L + LF++ +R+D L Sbjct: 1 MIFSLQGIVQELTPTYAVINVQGVGYYVGISLMTSQTLV-LNQQTFLFIQQIIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++ F LL SV GVGA A+ +LS ++ E+ +I+ NS +I + GI K Sbjct: 60 FGFNTRSEKEMFNLLISVNGVGAVSALILLSTLSLDEIASAILSGNSALIQKAKGIGAKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K S + ++SAL LG + + Sbjct: 120 AERIIVDLKDKVQKYSDPNA---------NISVMVDNKIKEESLSALEVLGIPKRTSEKI 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 ++K+ +I ++++ L+ I Sbjct: 171 ADKIIKQNPSI-SVEELVKQILKNI 194 >gi|167644751|ref|YP_001682414.1| Holliday junction DNA helicase RuvA [Caulobacter sp. K31] gi|189045745|sp|B0SUN8|RUVA_CAUSK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|167347181|gb|ABZ69916.1| DNA recombination protein RuvA domain I [Caulobacter sp. K31] Length = 204 Score = 130 bits (328), Expect = 8e-29, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 110/206 (53%), Gaps = 5/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ-IR 59 MIG+++G + + E+ LIDV GV Y++ C RTL L +G+ L +E+ + +R Sbjct: 1 MIGRLRGAVAEIGEEEALIDVMGVGYVVRCGSRTLQRLPALGEEALLHIESQWSESAGLR 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + DR+ F+LLQ++QGVG + AM VL ++ EL ++ ++ + + G+ K Sbjct: 61 LYGFGTREDRRAFVLLQAIQGVGPKAAMAVLDVLSPAELASAVAREDKAAVGRASGVGPK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 +A RI+TELK K I+ V+ V A +A++AL+ LG + A Sbjct: 121 LALRIVTELKDKPITDGPVLMTAPGAVAAAPAKAAPTG----DAVAALMGLGVAEVNARR 176 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 V + K + A +I+ L+ + Sbjct: 177 VVEAAAAKLGDEATVQALIKAGLQEL 202 >gi|260654961|ref|ZP_05860449.1| holliday junction DNA helicase RuvA [Jonquetella anthropi E3_33 E1] gi|260630276|gb|EEX48470.1| holliday junction DNA helicase RuvA [Jonquetella anthropi E3_33 E1] Length = 200 Score = 130 bits (328), Expect = 9e-29, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 90/205 (43%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ ++G + L +++ G+ + + + L ++G+ L + + L Sbjct: 1 MLASLRGTVILLEGSSAVVECGGLGFQVQLTRKAFG-LCRVGESVFLQTYLQVSDAGMSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +RQ F LL +V+GVG ++AM VL ++A E + ++ +SK + +PGI K Sbjct: 60 FGFADAAERQAFELLTTVKGVGGKLAMTVLQSLSAQETIAAVAAGDSKTLTAVPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI EL K S D++ + I AL +LG+ + A Sbjct: 120 AERICFELSEKITGSSEWSSADLTAKLQHS----------DEVIEALESLGFDHASSVRA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ A + I LR + Sbjct: 170 YQQLCQERGEPASTEEAIFNCLRLL 194 >gi|219669644|ref|YP_002460079.1| Holliday junction DNA helicase RuvA [Desulfitobacterium hafniense DCB-2] gi|219539904|gb|ACL21643.1| Holliday junction DNA helicase RuvA [Desulfitobacterium hafniense DCB-2] Length = 198 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 55/202 (27%), Positives = 103/202 (50%), Gaps = 8/202 (3%) Query: 5 IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64 ++G + + D +++DVQGV Y + P L G L+ +R+D++ L+GF Sbjct: 2 LRGKVWEIQADKLILDVQGVGYQLSIPYGLLGK-AHPGHELILYTHVILREDELALYGFS 60 Query: 65 SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 S +++ F+L+ SV G+G + A+ +LS + + +I +N ++ ++PGI K A R+ Sbjct: 61 SAAEKELFLLMLSVSGIGPKAALSILSTLGIGQTESAIASENITLLTKVPGIGKKTAQRL 120 Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV 184 + ELK K + ++ E A +F A+ L+ LG+ Q++A A+ Sbjct: 121 ILELKEKFK------GRAIALEGIEGAGSLPQAAFHSEAMETLLALGFSQEEAKKAL-QA 173 Query: 185 LKKEKNIADDSQIIRLALRAIS 206 L + +RLALR+++ Sbjct: 174 LPDSAQALSTEEQVRLALRSLA 195 >gi|149923021|ref|ZP_01911439.1| Holliday junction DNA helicase motor protein [Plesiocystis pacifica SIR-1] gi|149816142|gb|EDM75652.1| Holliday junction DNA helicase motor protein [Plesiocystis pacifica SIR-1] Length = 206 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 61/193 (31%), Positives = 101/193 (52%), Gaps = 4/193 (2%) Query: 17 VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ 76 V++DV+GV Y ++ I+TL+ + GD L+V T++R+D I LFGF +R F +L Sbjct: 11 VILDVKGVGYELFVSIQTLAGVPAEGDEVELWVHTNVREDAITLFGFAEAEERLLFRMLT 70 Query: 77 SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS 136 SV VG R A+ VL A EL+E+I ++S + +IPGI K + +I+ L K ++L Sbjct: 71 SVPKVGPRNAVAVLGGFPAIELLETIAAKDSAKLVKIPGIGKKTSEQIVLTLGDKVVTLL 130 Query: 137 SVVQQDMSCVNKEQAH--ICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADD 194 +++ QA P F A L++LG+ A+V+V + A+ Sbjct: 131 ELLRAQRGGEPGTQAELLPAEAPDFGTEAREVLLSLGWKGRAVEKALVAVEAELAEGANV 190 Query: 195 --SQIIRLALRAI 205 ++R+ L + Sbjct: 191 QLDALVRMTLAKL 203 >gi|307299266|ref|ZP_07579067.1| Holliday junction DNA helicase RuvA [Thermotogales bacterium mesG1.Ag.4.2] gi|306915062|gb|EFN45448.1| Holliday junction DNA helicase RuvA [Thermotogales bacterium mesG1.Ag.4.2] Length = 197 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 98/205 (47%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ I+G + + E ++I V G+ + + C T+S L D L + + L Sbjct: 1 MLEGIEGRVREIRETEIVIQVGGLFFKVNCTPNTISKLPVEKDVYLLTFMAYSQDRPPEL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +++ F +L +G + AM +LS + + + I +N+ ++ +PGI K Sbjct: 61 YGFYDQEEKELFNILLRASKIGPKSAMKILSSASPSRIKHIISTKNAAELSSLPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL D S + E+ S A++AL +LG+ ++Q+ Sbjct: 121 AERMIVEL---------ASLVDTSGITDEETIPGVERSHGEEAVAALTSLGFDENQSRKV 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+ +LK E+ I D +I+ AL+ I Sbjct: 172 VIEILKAEREI-DTHDLIKKALKEI 195 >gi|218961233|ref|YP_001741008.1| Holliday junction DNA helicase RuvA [Candidatus Cloacamonas acidaminovorans] gi|167729890|emb|CAO80802.1| Holliday junction DNA helicase RuvA [Candidatus Cloacamonas acidaminovorans] Length = 202 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 97/205 (47%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G + +I+ G+ + + PI T L G C L H+ QD IR+ Sbjct: 4 MIQYISGTLTFKTPVLAIIETMGIGWELKIPISTYEKLPTAGKPCKLLTYLHISQDDIRI 63 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +R+ F++L V G+G ++A+ +LS ++ ++++ ++ ++PGI K Sbjct: 64 FGFATEAERELFVMLNKVGGIGPKIALSILSTLSIPTFIKAVNSGEEGLLTRVPGIGKKS 123 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK L +N + + SAL++LG+ Q Sbjct: 124 AQRLIVELKDDVHKL----------LNHIDQKELQIGDVSSEVESALLSLGFNLHQIRKE 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +++ + + ++I+ ++ I Sbjct: 174 L-ALMDESMQKLNTEELIKEIIKRI 197 >gi|313888460|ref|ZP_07822127.1| Holliday junction DNA helicase RuvA [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845489|gb|EFR32883.1| Holliday junction DNA helicase RuvA [Peptoniphilus harei ACS-146-V-Sch2b] Length = 194 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 96/205 (46%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + Y++++ G+ YI+ R L + + + + +R+D L Sbjct: 1 MIEFLRGRVHSTDRGYLVLESNGIGYIVNMVERELHTFYE-NEEVFINIRLVLREDAAIL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F LL SV G+G ++AMG+L + + II ++ K + ++PGI K Sbjct: 60 YGFRHIETRDAFDLLTSVTGIGPKLAMGILDGDDVFNIAKYIISKDEKSLTKLPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K L+ + V + S A+ AL++LGY A A Sbjct: 120 AQRIILELKDKVEKLALDLTSMTDDVEIIEEKDDS-------AVEALISLGYNVYDAKKA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + V D S+ IR AL+ + Sbjct: 173 LEKV----DPSLDISERIREALKLM 193 >gi|330466911|ref|YP_004404654.1| Holliday junction DNA helicase RuvA [Verrucosispora maris AB-18-032] gi|328809882|gb|AEB44054.1| Holliday junction DNA helicase RuvA [Verrucosispora maris AB-18-032] Length = 200 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 99/206 (48%), Gaps = 11/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + D+ +I+V GV + C T++ L ++G L +R+D + L Sbjct: 1 MIASVRGVVTATGPDHAVIEVGGVGLAVQCAPGTIADL-RVGQPARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D + F LLQ+ GVG R+A VL+ T + ++I ++ + ++PGI K Sbjct: 60 YGFADDDAKALFELLQTASGVGPRLAQAVLAVHTPDAVRKAIANADTAALTRVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ + + V + A + ++ AL+ LG+ QA A Sbjct: 120 AERLVLELRDRIGPV---------PVGADGAAGVTGGAWPEQVRQALIGLGWTASQADQA 170 Query: 181 VVSVLKK-EKNIADDSQIIRLALRAI 205 V +V + + +++ A+R + Sbjct: 171 VAAVAETVDGAAPPVPVLLKQAIRLL 196 >gi|169836412|ref|ZP_02869600.1| Holliday junction DNA helicase, subunit A [candidate division TM7 single-cell isolate TM7a] Length = 192 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 48/204 (23%), Positives = 91/204 (44%), Gaps = 12/204 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G I + ++IDV G+ Y ++ + L +G+ + H+R+ L Sbjct: 1 MIAHVRGKISEKFNGSIIIDVNGLGYELFVSVVDF-DLVNLGESVKFYTYHHVREQSEEL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++ F +L SVQGVG + A+ +LS + +I N+ I + G+ K Sbjct: 60 FGFSTLSAKKIFEMLISVQGVGPKAALAILSLGNVETVRNAIANSNAGFIQKASGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +L K N + + + + A+ AL+ LGY A+ A Sbjct: 120 ADRVVVDLHDKV-------GLPTKYENSNEIIENNQLNSSDEAVEALMALGYTLADASEA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204 + ++ ++ + AL+ Sbjct: 173 LKNI----DTDLSTAERVTKALQQ 192 >gi|218281325|ref|ZP_03487813.1| hypothetical protein EUBIFOR_00378 [Eubacterium biforme DSM 3989] gi|218217510|gb|EEC91048.1| hypothetical protein EUBIFOR_00378 [Eubacterium biforme DSM 3989] Length = 192 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 104/207 (50%), Gaps = 21/207 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G ++ + D V++DV GV Y +Y LS K+ + L+ H+R+D I L Sbjct: 1 MIAFVNGIVKIIRNDRVVLDVHGVGYEVYL-ANALSQ--KMNEELFLYTYQHVREDAILL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+ + D + FM L +V+G+G + A +LS + E++E+I + K + +PGI K Sbjct: 58 FGFIKEEDYEVFMRLINVKGIGPKTAQTMLSVCSGKEMIEAIENDDIKRLKSLPGIGAKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK +SL + AL++LGY +Q Sbjct: 118 AGQIVLDLKGKFVSLE-------------TSDSPVSNPVWTQVQDALLSLGYKTNQ---- 160 Query: 181 VVSVLKK-EKNIADDSQIIRLALRAIS 206 + + K+ E + +++R AL ++ Sbjct: 161 LTKIKKEFENTELGEDEMLRQALILLA 187 >gi|229814935|ref|ZP_04445273.1| hypothetical protein COLINT_01978 [Collinsella intestinalis DSM 13280] gi|229809422|gb|EEP45186.1| hypothetical protein COLINT_01978 [Collinsella intestinalis DSM 13280] Length = 207 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 54/183 (29%), Positives = 91/183 (49%), Gaps = 1/183 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + +IDV G+ + + T S L ++G L+ +R+D L Sbjct: 1 MISILNGTLIEATAGSAVIDVNGIGFELGISATTASSLAQVGSPTRLYTRMVVREDSCTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L SV GVGA++A+ +LS T EL +++++ K +A +PG+ K Sbjct: 61 FGFATKDERTMFDKLVSVSGVGAKLALAILSSFTVPELYTLVMMEDDKGMATVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCV-NKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A R++ ELKG S+ V + PS +A +AL+++G+ + T Sbjct: 121 AQRLILELKGVFEKDRSLAGSAAPTVPLPFAPAAAAAPSAIEDATAALLSMGFTAAEVTL 180 Query: 180 AVV 182 A+ Sbjct: 181 ALD 183 >gi|148242421|ref|YP_001227578.1| Holliday junction resolvasome DNA-binding subunit [Synechococcus sp. RCC307] gi|166231453|sp|A5GTL6|RUVA_SYNR3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|147850731|emb|CAK28225.1| Holliday junction resolvasome DNA-binding subunit [Synechococcus sp. RCC307] Length = 208 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 48/211 (22%), Positives = 90/211 (42%), Gaps = 12/211 (5%) Query: 1 MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MIG + G I +++ ++L+ V Y + + T+ R+D Sbjct: 1 MIGWLHGTIGDRWQEGNRCWLLLICGPVGYELQVSESLWRG-TALESPTTVHTHLQQRED 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 +L+GF + DR F LL SV GVG +VA+G++S + A L++++ ++ KV+ Q PG+ Sbjct: 60 GQQLYGFETKADRNLFRLLISVNGVGPQVALGLISGLGAVSLLQAMAAEDVKVLCQAPGV 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 + A R+ E + + + + + + L LGYG ++ Sbjct: 120 GKRTAERLSLEWRSRLQERWQQQGGST------PLRLVEPVAESRELRATLEALGYGPEE 173 Query: 177 ATTAVVSV-LKKEKNIADDSQIIRLALRAIS 206 + AV + + +R L +S Sbjct: 174 VSAAVAQAGSQGLDPEQPMEEWLRHCLAWLS 204 >gi|323342039|ref|ZP_08082272.1| crossover junction ATP-dependent DNA helicase RuvA [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464464|gb|EFY09657.1| crossover junction ATP-dependent DNA helicase RuvA [Erysipelothrix rhusiopathiae ATCC 19414] Length = 195 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 93/205 (45%), Gaps = 17/205 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G DYV++D G+ Y ++C + + + H+R+D I L Sbjct: 1 MIAFISGVAVDRGIDYVVVDNHGIGYQVFCGNP---EMVTLNESIIFHTYQHVREDAIIL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+ + F L +V+GVG + + +LSR + ++V +I ++ + ++PG+ K+ Sbjct: 58 FGFVEKRELDIFRQLITVKGVGPKTGITILSRFSGDDIVRAIDQEDMAFLKKLPGVGPKM 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS++M +LKGK I + + A+ AL +LG+ + + Sbjct: 118 ASQMMLDLKGKFI------------ASDTPSTTKKALPLVDEALDALGDLGFKKVELNNI 165 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + N+ +I+ L+ + Sbjct: 166 KHEL--SLLNLDSVDDMIKEGLKLL 188 >gi|227499581|ref|ZP_03929688.1| crossover junction endoribonuclease subunit A [Anaerococcus tetradius ATCC 35098] gi|227218340|gb|EEI83594.1| crossover junction endoribonuclease subunit A [Anaerococcus tetradius ATCC 35098] Length = 195 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 100/205 (48%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G++ + E+ +I+ + Y+IY + TLS L +I ++ +R+D I L Sbjct: 1 MISYIIGHVRNIDEESFIIENNNIGYLIYSSLATLSNL-EINSEYKIYTSMQVREDDISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + + F LL SV +G + AMG+LS I+ E+ +++ + + GI K Sbjct: 60 FGFFTKDELEMFSLLTSVSTIGPKTAMGILSSISVNEIKTAVVNNDIDKLTLAKGIGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ EL K +S V +++ + + A AL+NLGY ++ Sbjct: 120 ASRIILELVDKVKKMSFVPVENIKQDDM-------LNEDFEVAKEALLNLGYQKNDVDRV 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + +++ +L+ + Sbjct: 173 LSELKDTD---LSLEGLVKESLKRL 194 >gi|22298075|ref|NP_681322.1| Holliday junction DNA helicase motor protein [Thermosynechococcus elongatus BP-1] gi|34222868|sp|Q8DLG1|RUVA_THEEB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|22294253|dbj|BAC08084.1| Holliday junction DNA helicase [Thermosynechococcus elongatus BP-1] Length = 210 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 49/213 (23%), Positives = 93/213 (43%), Gaps = 13/213 (6%) Query: 1 MIGKIKGNIEGLYED-----YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55 M ++G + G + ++++V GV Y + L + +F +R+ Sbjct: 1 MFVYLRGTVVGHQSEGGHRCALILEVNGVGYRLLVTSHLLQQYPPRPEVVQIFTHLSIRE 60 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 DQ+ L+GF S +R F+ L V GVG ++A+ +L + ELV++I+ N++ +++ PG Sbjct: 61 DQMLLYGFASAAERDLFLRLIRVNGVGPQMALSLLDTLPLPELVQAIVSGNTRRLSRAPG 120 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 + K A RI ELK + + + + + A+ GY Sbjct: 121 VGHKTAERIALELKAALSAWRQEMGFTTASSGLPSEAVREELELTLLAL------GYSDR 174 Query: 176 QATTAVVSV--LKKEKNIADDSQIIRLALRAIS 206 + A+ +V N +D +R A+ +S Sbjct: 175 EIAAALTAVGQTTTLPNNSDPEAWLREAIAWLS 207 >gi|300813213|ref|ZP_07093581.1| Holliday junction DNA helicase RuvA [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512666|gb|EFK39798.1| Holliday junction DNA helicase RuvA [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 198 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 112/206 (54%), Gaps = 9/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ IKGNI +YE +++D + Y+I +S L + + +++ +R+D I L Sbjct: 1 MLDFIKGNISEIYEGEIVLDNNDIGYLISISQLDISKL-SLNEELKIYLRLILREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ R F LL +V VG +++M +L + +++L +I+ +++ ++ + PG+ K Sbjct: 60 YGFLNKDSRTLFDLLNTVSSVGPKLSMTILGALGSSQLRSAILSEDANILTKSPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ ELK K S D+S ++ + A+ AL++LGY + +A A Sbjct: 120 ANRIILELKDKISKKSFTEDLDLSILDSSDTIDINNDP----ALEALLSLGYNEYEAKIA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +V + S+IIR AL+ ++ Sbjct: 176 LRNV----DQSQELSEIIRQALKVMA 197 >gi|282882990|ref|ZP_06291594.1| holliday junction DNA helicase RuvA [Peptoniphilus lacrimalis 315-B] gi|281297197|gb|EFA89689.1| holliday junction DNA helicase RuvA [Peptoniphilus lacrimalis 315-B] Length = 198 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 114/206 (55%), Gaps = 9/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ IKGNI +YE +++D + Y+I +S L + + +++ +R+D I L Sbjct: 1 MLDFIKGNISEIYEGEIVLDNNDIGYLISISQLDISKL-SLNEELKIYLRLILREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ R F LL +V VG +++M +L + +++L +I+ +++ ++ + PG+ K Sbjct: 60 YGFLNKDSRTLFDLLNTVSSVGPKLSMTILGALGSSQLRSAILSEDANILTKSPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+RI+ ELK K S D+S ++ + A+ AL++LGY + +A A Sbjct: 120 ANRIILELKDKISKKSFTEDLDLSILDSSDTIDINNDP----ALEALLSLGYNEYEAKIA 175 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +V + + + S+IIR AL+ ++ Sbjct: 176 LRNVDQNQ----ELSEIIRQALKVMA 197 >gi|206889338|ref|YP_002248715.1| holliday junction DNA helicase RuvA [Thermodesulfovibrio yellowstonii DSM 11347] gi|226698744|sp|B5YKF0|RUVA_THEYD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|206741276|gb|ACI20333.1| holliday junction DNA helicase RuvA [Thermodesulfovibrio yellowstonii DSM 11347] Length = 190 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 21/206 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ IKG + + D ++I G+ Y + PIR + + + +F ++++ I + Sbjct: 1 MLDFIKGKVITVKPDKIVIQTGGIGYSVKIPIRVSRYINR-DEETQIFTSLIVKEESIEI 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL +R F L + G+G ++A+ +LS L + I ++ K +++IPGI K Sbjct: 60 YGFLESSERDLFEELIKIAGIGPKMAINILSTYDRETLYKIIDHEDIKSLSKIPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL+G SL + +SAL+NLGY + +A Sbjct: 120 AQRILLELRGILPSLQ-----------------YEKDQKYDDILSALLNLGYKRLEAKEV 162 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + EK+ A IIR +L ++ Sbjct: 163 LDKIYNNEKDEAT---IIRESLSILA 185 >gi|34763029|ref|ZP_00144004.1| Holliday junction DNA helicase ruvA [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|237742027|ref|ZP_04572508.1| holliday junction DNA helicase ruvA [Fusobacterium sp. 4_1_13] gi|256845368|ref|ZP_05550826.1| Holliday junction DNA helicase RuvA [Fusobacterium sp. 3_1_36A2] gi|294785335|ref|ZP_06750623.1| holliday junction DNA helicase RuvA [Fusobacterium sp. 3_1_27] gi|27887289|gb|EAA24385.1| Holliday junction DNA helicase ruvA [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|229429675|gb|EEO39887.1| holliday junction DNA helicase ruvA [Fusobacterium sp. 4_1_13] gi|256718927|gb|EEU32482.1| Holliday junction DNA helicase RuvA [Fusobacterium sp. 3_1_36A2] gi|294487049|gb|EFG34411.1| holliday junction DNA helicase RuvA [Fusobacterium sp. 3_1_27] Length = 194 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 98/205 (47%), Gaps = 15/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G +E DY+ ID+ GV Y +Y P+R + ++G+ ++ H+++D +L Sbjct: 1 MFEYLYGTVEYKKMDYIAIDINGVGYRVYFPLREYEKI-EVGNKYKFYIYNHIKEDTYKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GFL + DR+ F LL + G+G+ +A+ VLS + +++E I + + Q+P + K Sbjct: 60 IGFLEEGDRKIFELLLKINGIGSSLALAVLSNFSYNKIIEIISKNDYTTLRQVPKLGEKK 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A I+ +LKGK +L ++ +S + I AL LGY + + Sbjct: 120 AQIIILDLKGKLKNLIYTEEETVSM------------DMLDDLILALEGLGYNKKEIDKT 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + I+ L+ + Sbjct: 168 LEKI--DLSKFSSLEDAIKGILKNM 190 >gi|300172987|ref|YP_003772153.1| Holliday junction DNA Helicase RuvA [Leuconostoc gasicomitatum LMG 18811] gi|299887366|emb|CBL91334.1| holliday junction DNA helicase RuvA [Leuconostoc gasicomitatum LMG 18811] Length = 196 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 49/206 (23%), Positives = 93/206 (45%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 M I G I +Y Y++I D GV Y ++ + ++VE +R+++I Sbjct: 1 MYEYINGLITNIYPAYLVICDRSGVGYKLFV-ANPYRF--EQNVESHVYVEQIVRENEIT 57 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 ++GF+ + ++ F L +V G+G + A+ +L+ + LV ++ ++ + Q PG+ K Sbjct: 58 MYGFIDENEKILFNKLLNVSGIGPKSALAILASDDSVGLVNAVANDDATYLTQFPGVGKK 117 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I+ +LKGK L+ S + +A+ AL +LGY + Sbjct: 118 TAQQIVLDLKGKLDDLA------ASVGMTTPVSQPNSNQALSDALEALNSLGYSTKEIAK 171 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 ++ K IR AL+ + Sbjct: 172 LEKTLAAKHD---TTDGYIRSALKLL 194 >gi|332799127|ref|YP_004460626.1| Holliday junction ATP-dependent DNA helicase ruvA [Tepidanaerobacter sp. Re1] gi|332696862|gb|AEE91319.1| Holliday junction ATP-dependent DNA helicase ruvA [Tepidanaerobacter sp. Re1] Length = 193 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 53/207 (25%), Positives = 100/207 (48%), Gaps = 16/207 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQIR 59 M+ ++G + + D+ +ID+ G + + T + + ++G+ L+ + +R D + Sbjct: 1 MLDYLEGVLVHVEPDFAIIDIGGWGLKLNISMFTYNKIKTELGNKLKLYTQMVLRDDAVE 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF ++RQ ++LL V G+G + A+ +LS + L SI+ ++ K + ++PGI K Sbjct: 61 LFGFFDVVERQAYVLLNKVSGIGPKAAISILSLMDVARLKTSILSEDVKDLVKVPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I+ ELK + L + M + I A AL++LG+ + Sbjct: 121 TAQKIIIELKDRIKDLPVTSDEGM-------------YNSIIEAREALISLGFNPMEIQL 167 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 + KN II+ AL+ +S Sbjct: 168 VLDE--DSVKNNDSVEDIIKCALKKLS 192 >gi|313897511|ref|ZP_07831054.1| Holliday junction DNA helicase RuvA [Clostridium sp. HGF2] gi|312957881|gb|EFR39506.1| Holliday junction DNA helicase RuvA [Clostridium sp. HGF2] Length = 212 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 57/208 (27%), Positives = 94/208 (45%), Gaps = 22/208 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG I D ++I+ G+ Y +Y L L+ H+R+D I L Sbjct: 20 MIAFIKGIIHSYSNDSLIIENNGIGYRVYVANPMAVRL---NAEVILYTYQHVREDAITL 76 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F+ L SV+GVG + A+G+L A ++ +I + K + +PGI K Sbjct: 77 FGFTTMEEHDLFLQLISVKGVGPKTALGMLGVCPARNMIAAIESNDVKTLKGLPGIGAKT 136 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK + + ++ ++A+ AL LGY + Sbjct: 137 ASQIVLDLKGKLVEEVTELE-------------VKENEQLLDALEALKALGYKNAE---- 179 Query: 181 VVSVLKKEK--NIADDSQIIRLALRAIS 206 + S+ K+ Q IR L ++ Sbjct: 180 LNSIKKELGTLEAMTSDQYIRKGLGILA 207 >gi|324989663|gb|EGC21607.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK353] gi|332363708|gb|EGJ41488.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK49] Length = 218 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 94/206 (45%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG I + Y++++V + YI++ + G + ++V +R+D L Sbjct: 23 MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGHLHQEAKVYVHQVVREDAELL 81 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 82 YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNVGLVQAIEQKNITYLTKFPKIGKKT 141 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK ++ + + + A+ A++ LGY + Sbjct: 142 AQQMVLDLEGKVVAADGQAES-------KAPVQTADNQELEEAMEAMLALGYKAAE---- 190 Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205 + + K + D I+ AL+ + Sbjct: 191 LKKIKKFFEGTTDTAENYIKSALKML 216 >gi|257066397|ref|YP_003152653.1| Holliday junction DNA helicase RuvA [Anaerococcus prevotii DSM 20548] gi|256798277|gb|ACV28932.1| Holliday junction DNA helicase RuvA [Anaerococcus prevotii DSM 20548] Length = 195 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 104/205 (50%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G++ + ED +I+ + Y+I+ ++TLS + +I + ++ +R+D I L Sbjct: 1 MISYIIGHVRSIKEDSFIIENNNMGYLIFSSLKTLSNI-EINNEYKIYTSMQVREDDISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + + F LL SV +G ++AMG+LS I+ E+ +II + + GI K Sbjct: 60 FGFFTKDELEMFTLLTSVSTIGPKIAMGILSSISVNEIKTAIINNDIDKLTVAKGIGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ EL K + V +++ +K+ I A AL+NLGY ++ Sbjct: 120 ASRIILELVDKVKKMDFVPVENIELNSKDNEEIDV-------AREALLNLGYEKNDVEKV 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + +++ +L+ + Sbjct: 173 LFELKDTD---LSLEGLVKESLKRL 194 >gi|323350703|ref|ZP_08086364.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis VMC66] gi|322123123|gb|EFX94814.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis VMC66] Length = 218 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 95/206 (46%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG I + Y++++V + YI++ + G++ ++V +R+D L Sbjct: 23 MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGQLHQEAKVYVHQVVREDAELL 81 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 82 YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK ++ + + + A+ A++ LGY + Sbjct: 142 AQQMVLDLEGKVVAADGLAES-------KAPVQTVDNQELEEAMEAMLALGYKAAE---- 190 Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205 + + K + D I+ AL+ + Sbjct: 191 LKKIKKFFEGTTDTAENYIKSALKML 216 >gi|325685740|gb|EGD27818.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 197 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 92/205 (44%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G I + YV+I+V G+ Y I P K GD ++VE +R++ + L Sbjct: 1 MYEYFEGTITVVNPAYVVIEVAGIGYRILTPTPYAY---KDGDKARIYVEQVVRENGMTL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S D+ F L V G+G + A+ +++ L +I + + PGI K Sbjct: 58 YGFKSQQDKVLFNKLNEVSGIGPKSALAIMAAEDNGALASAIESGEVSYLTRFPGIGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +L+GK + + + E + S+ +A+ AL LGY Q + Sbjct: 118 ASQIVLDLRGKMGNYVAE------NLFTEDEPVKSVFPALEDALLALGALGYSQKEVDR- 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + LKK + I+ L + Sbjct: 171 IKPKLKKLPE-MSADEYIKQGLGLL 194 >gi|119025822|ref|YP_909667.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium adolescentis ATCC 15703] gi|166230520|sp|A1A1K2|RUVA_BIFAA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|118765406|dbj|BAF39585.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium adolescentis ATCC 15703] Length = 205 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 55/210 (26%), Positives = 101/210 (48%), Gaps = 14/210 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G++E + +I+V GV Y + P L+ + G ++ ++ QD I L Sbjct: 1 MIGMLRGHVESVDAVSAIIEVGGVGYEVRMPSADLASMHA-GQEIKVYTSLNVSQDAITL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++ F+ LQ V G+G +VA+ +LS + L ++ ++ +A+ PG+ K Sbjct: 60 FGFGTLASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLARAVADGDATALAKAPGLGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELKG + + A + L++LG+ Q A A Sbjct: 120 AQKIILELKGSIDLSQIEGSSATAS--------TPEDTGAEQVVEGLMSLGWHQQDAAHA 171 Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205 V +V + N D ++++LAL ++ Sbjct: 172 VQTVCADNQIETPLNAKDVPRVLKLALTSL 201 >gi|159903243|ref|YP_001550587.1| putative holliday junction DNA helicase RuvA [Prochlorococcus marinus str. MIT 9211] gi|229560117|sp|A9B9X1|RUVA_PROM4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|159888419|gb|ABX08633.1| putative holliday junction DNA helicase RuvA [Prochlorococcus marinus str. MIT 9211] Length = 223 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 47/210 (22%), Positives = 90/210 (42%), Gaps = 5/210 (2%) Query: 1 MIGKIKG-NIEGLYEDY---VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MIG +KG I+ ++ GV Y I R L L ++++ +++D Sbjct: 1 MIGWLKGEKIDHWNNGNRAGFVLSCNGVGYEIQLSRRNLIALNNYN-VLSIWIHQVLKED 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 LFGF+ +R F L +V GVG ++AM +L + +L+ ++ + + + G+ Sbjct: 60 GSNLFGFIEKSERDLFRKLITVSGVGPQLAMSLLDDNSYEQLIANVQNKEVTKLTRSSGV 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 + A R++ EL+ K + + ++ SAL NL Y + Sbjct: 120 GKRTAERLILELQNKLSDFDLNNEFSPPTKLRPESAEDLNEELLTEIKSALRNLDYSDFE 179 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 AV +V + A + +L L++++ Sbjct: 180 ILEAVNTVTSNYLDDAASANERKLLLKSLN 209 >gi|154487345|ref|ZP_02028752.1| hypothetical protein BIFADO_01195 [Bifidobacterium adolescentis L2-32] gi|154083863|gb|EDN82908.1| hypothetical protein BIFADO_01195 [Bifidobacterium adolescentis L2-32] Length = 205 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 55/210 (26%), Positives = 101/210 (48%), Gaps = 14/210 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G++E + +I+V GV Y + P L+ + G ++ ++ QD I L Sbjct: 1 MIGMLRGHVESVDAVSAIIEVGGVGYEVRMPSADLASMHA-GQEIKVYTSLNVSQDAITL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++ F+ LQ V G+G +VA+ +LS + L ++ ++ +A+ PG+ K Sbjct: 60 FGFGTLASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLARAVADGDATALAKAPGLGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELKG + + A + L++LG+ Q A A Sbjct: 120 AQKIILELKGSIDLSQIEGSSATAS--------TPEDTGAEQVVEGLMSLGWHQQDAAHA 171 Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205 V +V + N D ++++LAL ++ Sbjct: 172 VQTVCADNQIETPLNAEDVPRVLKLALTSL 201 >gi|256026581|ref|ZP_05440415.1| Holliday junction DNA helicase ruvA [Fusobacterium sp. D11] gi|289764586|ref|ZP_06523964.1| holliday junction DNA helicase ruvA [Fusobacterium sp. D11] gi|289716141|gb|EFD80153.1| holliday junction DNA helicase ruvA [Fusobacterium sp. D11] Length = 194 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 51/205 (24%), Positives = 99/205 (48%), Gaps = 15/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G +E DY+ ID+ GV Y +Y P+R + ++G+ ++ H+++D +L Sbjct: 1 MFEYLYGTVEYKKMDYIAIDINGVGYRVYFPLREYEKI-EVGNKYKFYIYNHIKEDTYKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GFL + DR+ F LL + G+G+ +A+ VLS + +++E I + + Q+P + K Sbjct: 60 IGFLEEGDRKIFELLLKINGIGSSLALAVLSNFSYNKIIEIISKNDYTTLRQVPKLGEKK 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A I+ +LKGK +L+ ++ +S + + AL LGY + + Sbjct: 120 AQIIILDLKGKLKNLTYTEEETVSV------------DMLEDLVLALEGLGYNKKEIGKT 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + I+ L+ + Sbjct: 168 LEKI--DLSKFSSLEDAIKGILKNM 190 >gi|161506974|ref|YP_001576928.1| Holliday junction DNA helicase RuvA [Lactobacillus helveticus DPC 4571] gi|172048184|sp|A8YTI1|RUVA_LACH4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|160347963|gb|ABX26637.1| Holliday junction DNA helicase [Lactobacillus helveticus DPC 4571] Length = 196 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 52/193 (26%), Positives = 94/193 (48%), Gaps = 10/193 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G + + Y+++DV GV Y +Y P GD +F+E +R I L Sbjct: 1 MYEYFEGIVTVITPSYIVVDVNGVGYKVYSPTPFAYQ---KGDKAKIFIEQVVRDTGITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ D+ F+ L SV G+G + A+ +++ A L E+I K + + PG+ K Sbjct: 58 YGFQSEDDKGLFLKLLSVSGIGPKSALAIMAAEDANSLAEAIEQGEVKYLTRFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK ++ ++++ ++ +A+ AL+ LGY Q + Sbjct: 118 ASQIVLDLKGKLRDY-------VARLDRQDEEQGNISPALNDALLALIALGYTQKEVDRI 170 Query: 181 VVSVLKKEKNIAD 193 + + + AD Sbjct: 171 TTKLEEVNADTAD 183 >gi|116514518|ref|YP_813424.1| Holliday junction DNA helicase RuvA [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122274750|sp|Q048Y6|RUVA_LACDB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|116093833|gb|ABJ58986.1| Holliday junction DNA helicase subunit RuvA [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325126230|gb|ADY85560.1| Helicase Holliday junction [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 197 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 92/205 (44%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G I + YV+I+V G+ Y I P K GD ++VE +R++ + L Sbjct: 1 MYEYFEGTITVVNPAYVVIEVAGIGYRILTPTPYAY---KEGDKARIYVEQVVRENGMTL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S D+ F L V G+G + A+ +++ L +I + + PGI K Sbjct: 58 YGFKSQQDKVLFNKLNEVSGIGPKSALAIMAAEDNGALASAIESGEVSYLTRFPGIGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +L+GK + + + E + S+ +A+ AL LGY Q + Sbjct: 118 ASQIVLDLRGKMGNYVAE------NLFTEDEPVESVFPALEDALLALGALGYSQKEVDR- 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + LKK + I+ L + Sbjct: 171 IKPKLKKLPE-MSADEYIKQGLGFL 194 >gi|309388950|gb|ADO76830.1| Holliday junction DNA helicase RuvA [Halanaerobium praevalens DSM 2228] Length = 198 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 95/205 (46%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + + V++ + G+ Y + T ++G +F T++R+D ++L Sbjct: 1 MIGYLEGEVIEAEFNKVILGINGIGYELELAGFT--KQPRLGQKLEVFTYTYVREDVLKL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 F F +Q F +L +V G+G + +L+ + A + +I+ +N + +I GI K Sbjct: 59 FAFPEKSYKQLFEILITVNGIGPSAGLNILNTMPAARFISAILQKNEVTLKEISGIGPKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K + + N + + + AL LGY + A Sbjct: 119 AQRLILELQSKLEDFAYL-------QNNNDSEPVVTEEDRQDIVDALTVLGYKISEINKA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + ++ + S+ I+L L + Sbjct: 172 LREI--EFESETNVSEKIKLTLSQL 194 >gi|237744846|ref|ZP_04575327.1| holliday junction DNA helicase ruvA [Fusobacterium sp. 7_1] gi|229432075|gb|EEO42287.1| holliday junction DNA helicase ruvA [Fusobacterium sp. 7_1] Length = 194 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 99/205 (48%), Gaps = 15/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G +E DY+ ID+ G+ Y +Y P+R + ++G+ ++ H+++D +L Sbjct: 1 MFEYLYGTVEYKKMDYIAIDINGIGYRVYFPLREYEKI-EVGNKYKFYIYNHIKEDTYKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GFL + DR+ F LL + G+G+ +A+ VLS + +++E I + + Q+P + K Sbjct: 60 IGFLEEGDRKIFELLLKINGIGSSLALAVLSNFSYNKIIEIISKNDYTTLRQVPKLGEKK 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A I+ +LKGK +L+ ++ +S + + AL LGY + + Sbjct: 120 AQIIILDLKGKLKNLTYTEEETVSV------------DMLEDLVLALEGLGYNKKEIGKT 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + I+ L+ + Sbjct: 168 LDKI--DLSKFSSLEDAIKGILKNM 190 >gi|116617732|ref|YP_818103.1| Holliday junction resolvasome, DNA-binding subunit [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122272067|sp|Q03YJ2|RUVA_LEUMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|116096579|gb|ABJ61730.1| Holliday junction DNA helicase subunit RuvA [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 196 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 92/206 (44%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 M I G I + Y++I GV Y +Y + ++V+ +R++ I Sbjct: 1 MYEYINGLITNITPSYIVIASRSGVGYRLY-SANPYRF--EENVESHVYVQQIVRENDIS 57 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF+ ++ F L +V G+G + A+ +L+ A L+ ++ N + Q PG+ K Sbjct: 58 LYGFIDADEKALFNKLLNVSGIGPKSALAILANGDAEGLISAVENDNVAYLTQFPGVGKK 117 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I+ +LKGK L+S S N +A+ AL+ LGY Sbjct: 118 TAQQIVLDLKGKLDELASKTGMVDSSSN------PEQSQALDDALEALLALGYTAKDV-K 170 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 AV ++ + + D IR AL+ + Sbjct: 171 AVAQIIGRNSDTTDG--YIRSALKLL 194 >gi|44888463|sp|Q83GK0|RUVA_TROWT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA Length = 194 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 110/206 (53%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + V++++ G+ +++ P S ++ L+ +R+D + L Sbjct: 1 MIASLSGLLEAVRPGSVVVNMHGIGFLVRVP---QSFNPEVDAEVKLYTSLQVREDSVSL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S L+ F L ++ GVG RVA+ +LS +T E+ +++ + K + ++ G+ K+ Sbjct: 58 YGFASVLECTVFEQLITISGVGPRVALAILSVLTPAEVAAAVLEGDDKPLQRVSGVGKKL 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A I+ +L GK S+ ++ V++ + + AL+ LG+ + ++ A Sbjct: 118 AGTIVLQLAGKLTSVPLENRKQEQAVDR-----------SAEIVQALIGLGWQRQESAAA 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V SVL+K++++ +I+R ALR ++ Sbjct: 167 VESVLEKDQSL-TMPEILRNALRYLA 191 >gi|313124267|ref|YP_004034526.1| holliday junction ATP-dependent DNA helicase ruva [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280830|gb|ADQ61549.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 197 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 92/205 (44%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G I + YV+I+V G+ Y I P K GD ++VE +R++ + L Sbjct: 1 MYEYFEGTITVVNPAYVVIEVAGIGYRILTPTPYAY---KDGDKARIYVEQVVRENGMTL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S D+ F L V G+G + A+ +++ L +I + + PGI K Sbjct: 58 YGFKSQQDKVLFNKLNEVSGIGPKSALAIMAAEDNGALASAIESGEVSYLTRFPGIGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A++I+ +L+GK + + + E + S+ +A+ AL LGY Q + Sbjct: 118 AAQIVLDLRGKMGNYVAE------NLFTEDEPVKSVFPALEDALLALGALGYSQKEVDR- 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + LKK + I+ L + Sbjct: 171 IKPKLKKLPE-MSADEYIKQGLGLL 194 >gi|325695327|gb|EGD37227.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK150] gi|332365307|gb|EGJ43070.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK1059] Length = 218 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 94/206 (45%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG I + Y++++V + YI++ + G + ++V +R+D L Sbjct: 23 MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGHLHQEAKVYVHQVVREDAELL 81 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 82 YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK ++ + + + A+ A++ LGY + Sbjct: 142 AQQMVLDLEGKVVAADGLAES-------KAPVQTVDNQELEEAMEAMLALGYKAAE---- 190 Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205 + + K + D I+ AL+ + Sbjct: 191 LKKIKKFFEGTTDTAENYIKSALKML 216 >gi|224372976|ref|YP_002607348.1| holliday junction DNA helicase RuvA [Nautilia profundicola AmH] gi|254767379|sp|B9L9P0|RUVA_NAUPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|223589102|gb|ACM92838.1| holliday junction DNA helicase RuvA [Nautilia profundicola AmH] Length = 184 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 47/206 (22%), Positives = 89/206 (43%), Gaps = 26/206 (12%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++GNI +L+DV V Y + + T S + G ++ +++++ L Sbjct: 1 MIAALRGNIFEKDGGKILLDVNNVIYELNVSMITFSSVNDKG---LFYITEIIKENEYTL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +++ F L + GVG +VA+ + S T ++ I + + +IPGI K Sbjct: 58 YGFADKNEKKLFDSLIKLNGVGPKVALAICSTYTPQTFMDIIANHDINALKKIPGIGPKS 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ E+ + + A+SAL +LG+ ++ A Sbjct: 118 AKRILMEM------------------GEFEVVFEEQNPVFNQALSALESLGFNKNDIVKA 159 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + I+LAL+ +S Sbjct: 160 LNGIKSDN-----LEETIKLALKKLS 180 >gi|167745589|ref|ZP_02417716.1| hypothetical protein ANACAC_00280 [Anaerostipes caccae DSM 14662] gi|167654901|gb|EDR99030.1| hypothetical protein ANACAC_00280 [Anaerostipes caccae DSM 14662] Length = 187 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 50/193 (25%), Positives = 88/193 (45%), Gaps = 8/193 (4%) Query: 13 YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWF 72 +++ G+ Y I P G IG ++ H+R+D I LFGF + + + F Sbjct: 2 TPGGAVVENNGIGYDIMMPAG-QEFPGGIGQEVRIYTHMHVREDDISLFGFRTKEELEAF 60 Query: 73 MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132 LL V G+G +V + VLS ++ EL +++ +SK I++ PG+ K A +++ EL+ K Sbjct: 61 ELLIGVSGIGPKVGLSVLSTLSVYELKIAVMSDDSKTISKTPGLGPKGAKKLILELRDKL 120 Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIA 192 + M A + LV+LGY + +A A+ V + Sbjct: 121 DFEEFEQAEPMDFAGDLPAEDSVAVTA-----QGLVSLGYSRSEAMMAIKKV--ENAAEY 173 Query: 193 DDSQIIRLALRAI 205 Q+++ AL + Sbjct: 174 SPEQLLKKALTKL 186 >gi|104774420|ref|YP_619400.1| Holliday junction DNA helicase RuvA [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|300811568|ref|ZP_07092052.1| Holliday junction DNA helicase RuvA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|123251847|sp|Q1G940|RUVA_LACDA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|103423501|emb|CAI98403.1| Holliday junction DNA helicase RuvA [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|300497428|gb|EFK32466.1| Holliday junction DNA helicase RuvA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 197 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 92/205 (44%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G I + YV+I+V G+ Y I P K GD ++VE +R++ + L Sbjct: 1 MYEYFEGTITVVNPAYVVIEVAGIGYRILTPTPYAY---KDGDKARIYVEQVVRENGMTL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S D+ F L V G+G + A+ +++ L +I + + PGI K Sbjct: 58 YGFKSQQDKVLFNKLNEVSGIGPKSALAIMAAEDNGALASAIESGEVSYLTRFPGIGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +L+GK + + + E + S+ +A+ AL LGY Q + Sbjct: 118 ASQIVLDLRGKMGNYVAE------NLFTEDEPVKSVFPALEDALLALGALGYSQKEVDR- 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + LKK + I+ L + Sbjct: 171 IKPKLKKLPE-MSADEYIKQGLGFL 194 >gi|303233139|ref|ZP_07319812.1| Holliday junction DNA helicase RuvA [Atopobium vaginae PB189-T1-4] gi|302480724|gb|EFL43811.1| Holliday junction DNA helicase RuvA [Atopobium vaginae PB189-T1-4] Length = 208 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 45/208 (21%), Positives = 93/208 (44%), Gaps = 5/208 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQIR 59 MI ++ G + L +V+IDV GV Y + + L + G L ++++ + Sbjct: 1 MIVQLSGTLVELTSSHVIIDVAGVGYELGISASCAAHLPAEKGSPLVLLTRMIVKENALE 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +R F + S+ GVG ++A+ +LS T ++L+ Q+ ++Q+ G+ K Sbjct: 61 LYGFADAYERLMFDTIISISGVGPKLALAILSLYTPSQLLTIAQTQDVAAMSQVSGVGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQ-QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ EL + + + + A + +A +AL ++G+ + Sbjct: 121 KAQRLLLELADMCARTGELQGCVSAAAPSAKAASVEQRGDPMFDARAALASMGFTAVEIE 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ ++ ALR+++ Sbjct: 181 RALEGCSTDN---QTAESLVAQALRSLA 205 >gi|297243469|ref|ZP_06927401.1| holliday junction ATP-dependent DNA helicase ruvA [Gardnerella vaginalis AMD] gi|296888514|gb|EFH27254.1| holliday junction ATP-dependent DNA helicase ruvA [Gardnerella vaginalis AMD] Length = 209 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 60/210 (28%), Positives = 102/210 (48%), Gaps = 10/210 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + + LI V GV Y Y P + LS L + G ++ + QD + L Sbjct: 1 MIGMLVGQVASIDARSALIVVSGVGYETYMPSQDLSSLHE-GQEVRVYTSLQVSQDALTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F+ +Q V G+G +VA+ +LS + L+++I + ++ PG+ K Sbjct: 60 YGFTTQAAKRMFLQVQKVSGIGPKVALSMLSTLNVDRLLQAISEGDVTSLSSAPGLGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELKG SL + D S + + S I L++LG+ Q A A Sbjct: 120 AQKIILELKG---SLDPSILADSSNDSTQSNKQIVDSSV-QCVIEGLISLGWRQVDAQRA 175 Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205 V V + + AD ++R+AL ++ Sbjct: 176 VEQVCAENNISTPISDADLPNVLRMALASL 205 >gi|224541319|ref|ZP_03681858.1| hypothetical protein CATMIT_00479 [Catenibacterium mitsuokai DSM 15897] gi|224525756|gb|EEF94861.1| hypothetical protein CATMIT_00479 [Catenibacterium mitsuokai DSM 15897] Length = 204 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 95/205 (46%), Gaps = 21/205 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG I GLY D+++ID G+ Y ++ + K GD T+++ +++D + L Sbjct: 19 MYSYIKGIIAGLYSDHIVIDNHGIGYEVHVS-NPYNF--KKGDDATVYIYQQVKEDDLTL 75 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +++ F L V+G+G + A+G+L+ ++++I +N + +IPGI K Sbjct: 76 FGFKKKEEKELFQKLILVKGIGCKTAIGILATGEIDAIIDAIEGKNIAYLKKIPGIGPKA 135 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +L GK +A A L+ LGY Q A Sbjct: 136 AQQIILDLHGKFDK---------------RAMKPLGSPDYEEATEVLIALGYKQSDVEKA 180 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + D + ++ AL + Sbjct: 181 MKVLSSEN---LDTNGYVKRALALL 202 >gi|169829378|ref|YP_001699536.1| Holliday junction ATP-dependent DNA helicase ruvA [Lysinibacillus sphaericus C3-41] gi|229560099|sp|B1HVA4|RUVA_LYSSC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|168993866|gb|ACA41406.1| Holliday junction ATP-dependent DNA helicase ruvA [Lysinibacillus sphaericus C3-41] Length = 206 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 41/197 (20%), Positives = 88/197 (44%), Gaps = 3/197 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + +Y++++ +G+ + + P + ++V H+R+D L Sbjct: 1 MYDYLKGLITRITPEYIVLEQKGIGWQLNTPNPFAFRTSAMEQQ--IYVHLHVREDAQVL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + R+ F L V G+G + A+ +L+ +++ +I ++ + + PG+ K Sbjct: 59 YGFPNLDQRELFRKLILVSGIGPKGALAILATGNPQQVISAIEREDETFLVKFPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +LKGK SL ++ + + AI AL LGY + + Sbjct: 119 ARQMILDLKGKLGSLLETIELPSTEDELPLFGVHPYKHELEEAILALAALGYSEKELEK- 177 Query: 181 VVSVLKKEKNIADDSQI 197 + +L+ + Sbjct: 178 IRPLLEDNDKLETTDAY 194 >gi|325689191|gb|EGD31198.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK115] Length = 218 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 93/206 (45%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG I + Y++++V + YI++ + G++ ++V +R+D L Sbjct: 23 MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGQLHQEAKVYVHQVVREDAELL 81 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 82 YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + + + A+ A++ LGY + Sbjct: 142 AQQMVLDLEGKVVVADGPAES-------KAPVQTVDNQELEEAMEAMLALGYKAAE---- 190 Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205 + + K + D I+ AL+ + Sbjct: 191 LKKIKKFFEGTTDTAENYIKSALKML 216 >gi|227432395|ref|ZP_03914385.1| crossover junction endoribonuclease subunit A [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351834|gb|EEJ42070.1| crossover junction endoribonuclease subunit A [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 196 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 92/206 (44%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 M I G I + Y++I GV Y +Y + ++V+ +R++ I Sbjct: 1 MYEYINGLITNITPSYIVIASRSGVGYRLY-SANPYRF--EENVESHVYVQQIVRENDIS 57 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF+ ++ F L +V G+G + A+ +L+ A L+ ++ N + Q PG+ K Sbjct: 58 LYGFIDADEKALFNKLLNVSGIGPKSALAILANGDAEGLISAVENDNVAYLTQFPGVGKK 117 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I+ +LKGK L+S S N +A+ AL+ LGY Sbjct: 118 TAQQIVLDLKGKLDELASKTGMVDSSSN------PEQSQDLDDALEALLALGYTAKDV-K 170 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 AV ++ + + D IR AL+ + Sbjct: 171 AVAQIIGRNSDTTDG--YIRSALKLL 194 >gi|260102901|ref|ZP_05753138.1| crossover junction endoribonuclease subunit A [Lactobacillus helveticus DSM 20075] gi|260083290|gb|EEW67410.1| crossover junction endoribonuclease subunit A [Lactobacillus helveticus DSM 20075] Length = 196 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 53/193 (27%), Positives = 96/193 (49%), Gaps = 10/193 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G + + Y+++DV GV Y +Y P GD +F+E +R I L Sbjct: 1 MYEYFEGIVTVITPSYIVVDVNGVGYKVYSPTPFAYQ---KGDKAKIFIEQVVRDTGITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S+ D++ F+ L SV G+G + A+ +++ A L E+I K + + PG+ K Sbjct: 58 YGFQSEDDKELFLKLLSVSGIGPKSALAIMAAEDANSLAEAIEQGEVKYLTRFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK ++ ++++ ++P +A+ AL+ LGY Q + Sbjct: 118 ASQIVLDLKGKLRDY-------VARLDRQDEEQGNIPPALNDALLALIALGYTQKELDRI 170 Query: 181 VVSVLKKEKNIAD 193 + + + AD Sbjct: 171 TPKLEEVNADTAD 183 >gi|327463456|gb|EGF09775.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK1057] Length = 218 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 93/206 (45%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG I + Y++++V + YI++ + G + ++V +R+D L Sbjct: 23 MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGHLHQEAKVYVHQVVREDAELL 81 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 82 YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + + + + A+ A++ LGY + Sbjct: 142 AQQMVLDLEGKVVVADGPAESKVPVQ-------TADNQELEEAMEAMLALGYKAAE---- 190 Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205 + + K + D I+ AL+ + Sbjct: 191 LKKIKKFFEGTTDTAENYIKSALKML 216 >gi|324992648|gb|EGC24569.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK405] gi|324995823|gb|EGC27734.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK678] gi|327460051|gb|EGF06390.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK1] gi|327488641|gb|EGF20441.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK1058] Length = 218 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 93/206 (45%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG I + Y++++V + YI++ + G + ++V +R+D L Sbjct: 23 MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGHLHQEAKVYVHQVVREDAELL 81 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 82 YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK ++ + + A+ A++ LGY + Sbjct: 142 AQQMVLDLEGKVVAADGPSES-------KAPVQTMDNQELEEAMEAMLALGYKAAE---- 190 Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205 + + K + D I+ AL+ + Sbjct: 191 LKKIKKFFEGTTDTAENYIKSALKML 216 >gi|227504981|ref|ZP_03935030.1| Holliday junction DNA helicase motor protein [Corynebacterium striatum ATCC 6940] gi|227198431|gb|EEI78479.1| Holliday junction DNA helicase motor protein [Corynebacterium striatum ATCC 6940] Length = 194 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 52/196 (26%), Positives = 99/196 (50%), Gaps = 7/196 (3%) Query: 10 EGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDR 69 + D+ +I+ GV Y TL L + GD T+ +++D + L+GF +D DR Sbjct: 2 LSISLDHAVIECAGVGYKFLATPVTLGTL-RRGDEATVLTSMVVKEDSMTLYGFSNDEDR 60 Query: 70 QWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELK 129 F +LQ+V G+G ++A+ LS + ++L ++I ++K + IPG+ ++A R+ EL+ Sbjct: 61 DMFHVLQTVSGLGPKLALAALSVMGPSQLAQAISSGDAKTLQTIPGVGKRMAERLALELR 120 Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEK 189 K + + Q +E + + + ALV LG+ A V ++ +E Sbjct: 121 DKVSAFAPQAQP-----GQEASAAVAHGPVVDQVVEALVGLGFTDKAARPVVEGIVAEE- 174 Query: 190 NIADDSQIIRLALRAI 205 + A+ + ++R AL + Sbjct: 175 SAAETAVVLRGALAQL 190 >gi|298252762|ref|ZP_06976556.1| Holliday junction ATP-dependent DNA helicase ruvA [Gardnerella vaginalis 5-1] gi|297533126|gb|EFH72010.1| Holliday junction ATP-dependent DNA helicase ruvA [Gardnerella vaginalis 5-1] Length = 209 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 62/210 (29%), Positives = 103/210 (49%), Gaps = 10/210 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + + LI V GV Y Y P + LS L + G ++ + QD + L Sbjct: 1 MIGMLVGQVASIDARSALIVVSGVGYETYMPSQDLSSLHE-GQEVRVYTSLQVSQDALTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F+ +Q V G+G +VA+ +LS + L+++I + ++ PG+ K Sbjct: 60 YGFTTQAAKRMFLQVQKVSGIGPKVALSMLSTLNVDRLLQAISEGDVTSLSSAPGLGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELKG SL S + D S + + S I LV+LG+ Q A A Sbjct: 120 AQKIILELKG---SLDSSILADSSNDSTQSNKQIVDSSV-QCVIEGLVSLGWRQVDAQRA 175 Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205 V V + + AD ++R+AL ++ Sbjct: 176 VEQVCAENNISIPISDADLPNVLRMALASL 205 >gi|58336747|ref|YP_193332.1| Holliday junction DNA helicase RuvA [Lactobacillus acidophilus NCFM] gi|227903308|ref|ZP_04021113.1| helicase Holliday junction [Lactobacillus acidophilus ATCC 4796] gi|75358012|sp|Q5FLX3|RUVA_LACAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|58254064|gb|AAV42301.1| helicase Holliday junction [Lactobacillus acidophilus NCFM] gi|227868937|gb|EEJ76358.1| helicase Holliday junction [Lactobacillus acidophilus ATCC 4796] Length = 195 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 50/193 (25%), Positives = 90/193 (46%), Gaps = 11/193 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G I + YV++DV G+ Y ++ P G +++E +R I L Sbjct: 1 MYEYFEGIISEVTPSYVVVDVNGIGYKVFSPTPFAYKQ---GQKAKVYIEQIVRDTGITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D+ F+ L SV G+G + AM +++ + L E+I K + + PG+ K Sbjct: 58 YGFQDQDDKGLFLKLLSVSGIGPKSAMAIMAAEDSNSLAEAIEQGEVKYLTRFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK + + + + + +A+ AL+ LGY Q + Sbjct: 118 ASQIVLDLKGKLGDYVARLDKPENGE--------EISPALNDALLALIALGYTQKEVDRI 169 Query: 181 VVSVLKKEKNIAD 193 +++ E + AD Sbjct: 170 TPKLVEIEADTAD 182 >gi|20807635|ref|NP_622806.1| Holliday junction resolvasome DNA-binding subunit [Thermoanaerobacter tengcongensis MB4] gi|22001976|sp|Q8RAN3|RUVA_THETN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|20516178|gb|AAM24410.1| Holliday junction resolvasome DNA-binding subunit [Thermoanaerobacter tengcongensis MB4] Length = 187 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 97/206 (47%), Gaps = 20/206 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G IE + D+V+ID+ G+ I+ P T+ L G+ L+ ++R+D ++ Sbjct: 1 MIEYIRGIIEDIGPDHVIIDLMGIGIKIFVPFSTMKELPPKGNITKLYTYLYVREDGFQI 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F L SV GVG + A+ +LS + ++++ + K++ PGI K Sbjct: 61 FGFKRKEELELFEKLLSVSGVGPKGALSILSVVPIESFIKAVNSGDYKILTAAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K V ++D +A + GY + +A A Sbjct: 121 AERIILELKDKVPKEVVVPKEDSLLNEALEALLAL---------------GYTKSEAIYA 165 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + V N Q ++ AL+ ++ Sbjct: 166 LSDV-----NCESVEQAVKEALKKLA 186 >gi|293192652|ref|ZP_06609606.1| holliday junction DNA helicase RuvA [Actinomyces odontolyticus F0309] gi|292820159|gb|EFF79156.1| holliday junction DNA helicase RuvA [Actinomyces odontolyticus F0309] Length = 207 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 47/204 (23%), Positives = 91/204 (44%), Gaps = 9/204 (4%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 I ++G + + D++ I V G+ + ++ + T+F +R+D + L+ Sbjct: 8 ISILRGTVASVGLDHIDIVVGGIGFRVHVTPA-FAQGASRDQEMTVFTSMIVREDLMTLY 66 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF S +R F L SV G+G ++A+ L+ + +L ++ Q+ + +IPG+ K A Sbjct: 67 GFESADERDVFTKLLSVSGIGPKIALAALAVLRPDDLRRAVRDQDLSALQRIPGVGKKSA 126 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 R+ E+ K + A + + A +ALV LG+ + QA A+ Sbjct: 127 QRMALEIGDKLG-----TPAALPGAQTAAAPAPTEDAVASEVSAALVGLGWSEAQAAKAI 181 Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205 + + S ++R AL + Sbjct: 182 EKLA---GSGLGASDMLRAALVTL 202 >gi|254478024|ref|ZP_05091408.1| Holliday junction DNA helicase RuvA [Carboxydibrachium pacificum DSM 12653] gi|214036028|gb|EEB76718.1| Holliday junction DNA helicase RuvA [Carboxydibrachium pacificum DSM 12653] Length = 187 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 96/206 (46%), Gaps = 20/206 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G IE + D+V+ID G+ I+ P T+ L G+ L+ ++R+D ++ Sbjct: 1 MIEYIRGIIEDIGPDHVIIDFMGIGIKIFVPFSTMKELPPKGNITKLYTYLYVREDGFQI 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F L SV GVG + A+ +LS + ++++ + K++ PGI K Sbjct: 61 FGFKRKEELELFEKLLSVSGVGPKGALSILSVVPIESFIKAVNSGDYKILTAAPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK K V ++D +A + GY + +A A Sbjct: 121 AERIILELKDKVPKEVVVPKEDSLLNEALEALLAL---------------GYTKSEAIYA 165 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + V N Q ++ AL+ ++ Sbjct: 166 LSDV-----NCESVEQAVKEALKKLA 186 >gi|332365447|gb|EGJ43208.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK355] Length = 218 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 44/205 (21%), Positives = 91/205 (44%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG I + Y++++V + YI++ + G + ++V +R+D L Sbjct: 23 MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGYLHQEAKVYVHQVVREDAELL 81 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 82 YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK ++ + + A+ A++ LGY + Sbjct: 142 AQQMVLDLEGKVVAADGPSES-------KAPIQTVDNQELEEAMEAMLALGYKAAELKK- 193 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + V E I+ AL+ + Sbjct: 194 IKKVF--EGTTDTAENYIKSALKML 216 >gi|209524253|ref|ZP_03272803.1| Holliday junction DNA helicase RuvA [Arthrospira maxima CS-328] gi|209495344|gb|EDZ95649.1| Holliday junction DNA helicase RuvA [Arthrospira maxima CS-328] Length = 206 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 54/212 (25%), Positives = 94/212 (44%), Gaps = 13/212 (6%) Query: 1 MIGKIKGNIEGLYED-----YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55 MIG + G + G+Y+ ++ +DV GV Y + R + KIG+ +F H+R Sbjct: 1 MIGYLNGTVAGIYKKTGNRVFLWLDVNGVGYELQILPRMQNLDAKIGENLQVFTHLHIRD 60 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 D + L+GF S +R F L SV G+G ++A+ +L + +LV++I+ N+ ++ + PG Sbjct: 61 DLMVLYGFSSMAERDLFRQLVSVSGIGMQLAIALLDTLALPDLVQAIVGGNTGILTKTPG 120 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 + K A RI ELK K + A +L+ LGY Sbjct: 121 VGKKTAERITLELKTKLSEWRKQAGLPTVSTSNLSAE------IQEEVEISLLALGYTTS 174 Query: 176 QATTAVVSVLK--KEKNIADDSQIIRLALRAI 205 + A+ ++ I+ A+ + Sbjct: 175 EVMQALKAITSHPNLSENNSAEDWIKYAISIL 206 >gi|169824513|ref|YP_001692124.1| holliday junction DNA helicase [Finegoldia magna ATCC 29328] gi|302380570|ref|ZP_07269035.1| Holliday junction DNA helicase RuvA [Finegoldia magna ACS-171-V-Col3] gi|303233766|ref|ZP_07320420.1| Holliday junction DNA helicase RuvA [Finegoldia magna BVS033A4] gi|229560032|sp|B0S1J4|RUVA_FINM2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|167831318|dbj|BAG08234.1| holliday junction DNA helicase [Finegoldia magna ATCC 29328] gi|302311513|gb|EFK93529.1| Holliday junction DNA helicase RuvA [Finegoldia magna ACS-171-V-Col3] gi|302495200|gb|EFL54952.1| Holliday junction DNA helicase RuvA [Finegoldia magna BVS033A4] Length = 198 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 93/205 (45%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G I ++E+Y++++ + Y I+ D ++ E R+D L Sbjct: 1 MYSYIIGVITEVHENYIVLENNNIGYKIFITD-FFRDNVSAFDEYKVYTEFVEREDASIL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R+ F LL V +G + AM +LS +T E +II + K++ Q PG+ K Sbjct: 60 YGFSSQKERELFNLLTDVTSIGPKYAMNILSTMTVDECKTAIITDDIKLLTQAPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ ELK K D K + + A AL+ LGY ++ Sbjct: 120 ASRIILELKEKIEK-------DFVPSEKPVNKEVKRSNDSEFAREALLQLGYFKNDVDAF 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + + I++ A++++ Sbjct: 173 IEN---TDISGLSIEDIMKKAMKSL 194 >gi|328944741|gb|EGG38902.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK1087] Length = 218 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 92/206 (44%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG I + Y++++V + YI++ + G + ++V +R+D L Sbjct: 23 MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGHLHQEAKVYVHQVVREDAELL 81 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 82 YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + + + A+ A++ LGY + Sbjct: 142 AQQMVLDLEGKVVVADGPAES-------KAPVQTVDNQELEEAMEAMLALGYKAAE---- 190 Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205 + + K + D I+ AL+ + Sbjct: 191 LKKIKKFFEGTTDTAENYIKSALKML 216 >gi|306822725|ref|ZP_07456103.1| crossover junction ATP-dependent DNA helicase RuvA [Bifidobacterium dentium ATCC 27679] gi|304554270|gb|EFM42179.1| crossover junction ATP-dependent DNA helicase RuvA [Bifidobacterium dentium ATCC 27679] Length = 205 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 56/210 (26%), Positives = 99/210 (47%), Gaps = 14/210 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G +E + LI+V GV Y I P L+ + G ++ ++ QD I L Sbjct: 1 MIGMLHGRVESVDMSSALIEVGGVGYEIRMPSADLASMHA-GQEVKVYTSLNVSQDAITL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ ++ F+ LQ V G+G +VA+ +LS + L ++ ++ +A+ PG+ K Sbjct: 60 FGFLTPASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLAHAVADGDATALAKAPGLGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELKG + + + + L++LG+ Q A A Sbjct: 120 AQKIILELKGSIDLSQIETAASVIS--------RPEDTGSEQVVEGLISLGWRQQDALHA 171 Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205 V V + + D ++++LAL ++ Sbjct: 172 VQEVCRSNDIATPLSNEDVPRVLKLALTSL 201 >gi|295396081|ref|ZP_06806264.1| crossover junction ATP-dependent DNA helicase RuvA [Brevibacterium mcbrellneri ATCC 49030] gi|294971022|gb|EFG46914.1| crossover junction ATP-dependent DNA helicase RuvA [Brevibacterium mcbrellneri ATCC 49030] Length = 194 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 15/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + + + + GV ++ + + G L E +R+D + L Sbjct: 1 MIRYLEGTVHTVSANSLTVVTSGVGREVFVTPAVAGRV-RTGSEVALHTELIVREDALTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + + F L GVG ++A+ +LS ++ ++ +I KV+ +PG+ K+ Sbjct: 60 YGFDTPSELKLFSTLLGANGVGPKLALAILSVLSPDQVYGAISDNTPKVLTAVPGVGPKV 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A++++ +L+GK + S+V + + ALV LG+ + A A Sbjct: 120 AAKLIVDLQGKVPATSAVPSSGAGPAS-------------AEVVQALVGLGWKEATAIKA 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +V + A + +++ ALR + Sbjct: 167 VEAVAPEMGQ-ASVADMLKAALREL 190 >gi|260893478|ref|YP_003239575.1| Holliday junction DNA helicase RuvA [Ammonifex degensii KC4] gi|260865619|gb|ACX52725.1| Holliday junction DNA helicase RuvA [Ammonifex degensii KC4] Length = 193 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 94/205 (45%), Gaps = 21/205 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ ++G++ +I V G+ ++ P+ L G L+ +R+D+ + Sbjct: 1 MLAFLRGSVLEKERGRAVILVGGMGLEVFLPLSLYERLPAKGGEVELYTCLLLREDRPEI 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R +F+ L + GVG + A+ +LS + EL E+I ++ + + +PG+ K Sbjct: 61 YGFGDREERDFFLRLLKIGGVGPKTALALLSCFSVEELREAIRSEDLEKLTVVPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + A +A++AL+NLGY + +A A Sbjct: 121 ARRLLLELKE-------------------EKGAPVEGEAAADAVAALINLGYRRREAEEA 161 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + ++++L+L + Sbjct: 162 VREAKARGAQG--IEELLKLSLAYL 184 >gi|260494643|ref|ZP_05814773.1| Holliday junction DNA helicase RuvA [Fusobacterium sp. 3_1_33] gi|260197805|gb|EEW95322.1| Holliday junction DNA helicase RuvA [Fusobacterium sp. 3_1_33] Length = 194 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 99/205 (48%), Gaps = 15/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G +E DY+ ID+ G+ Y +Y P+R + ++G+ ++ H+++D +L Sbjct: 1 MFEYLYGTVEYKKMDYIAIDINGIGYRVYFPLREYEKI-EVGNKYKFYIYNHIKEDTYKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GFL + DR+ F LL + G+G+ +A+ VLS + +++E I + + Q+P + K Sbjct: 60 IGFLEEGDRKIFELLLKINGIGSSLALAVLSNFSYNKIIEIISKNDYTTLRQVPKLGEKK 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A I+ +LKGK +L+ ++ +S + + AL LGY + + Sbjct: 120 AQIIILDLKGKLKNLTYTEEETVSV------------DMLEDLVLALEGLGYNKKEIGKT 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + I+ L+ + Sbjct: 168 LEKI--DLSKFSSLEDAIKGILKNM 190 >gi|154508894|ref|ZP_02044536.1| hypothetical protein ACTODO_01405 [Actinomyces odontolyticus ATCC 17982] gi|153798528|gb|EDN80948.1| hypothetical protein ACTODO_01405 [Actinomyces odontolyticus ATCC 17982] Length = 207 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 46/204 (22%), Positives = 91/204 (44%), Gaps = 9/204 (4%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 I ++G + + D++ I V G+ + ++ + T+F +R+D + L+ Sbjct: 8 ISILRGTVASVGLDHIDIVVGGIGFRVHVTPA-FAQGASRDQEMTVFTSMIVREDSMTLY 66 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF S +R F + SV G+G ++A+ L+ + +L ++ Q+ + +IPG+ K A Sbjct: 67 GFESADERDVFTKMLSVSGIGPKIALAALAVLRPDDLRRAVRDQDLSTLQRIPGVGKKSA 126 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 R+ E+ K + A + + A +ALV LG+ + QA A+ Sbjct: 127 QRMALEIGDKLG-----TPAALPGAQTAAAPAPTEDAVASEVSAALVGLGWSEAQAAKAI 181 Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205 + + S ++R AL + Sbjct: 182 EKLA---GSGLGASDMLRAALVTL 202 >gi|284051632|ref|ZP_06381842.1| Holliday junction DNA helicase RuvA [Arthrospira platensis str. Paraca] gi|291571635|dbj|BAI93907.1| Holliday junction DNA helicase RuvA [Arthrospira platensis NIES-39] Length = 206 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 51/212 (24%), Positives = 89/212 (41%), Gaps = 13/212 (6%) Query: 1 MIGKIKGNIE---GLYEDYVLI--DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55 MIG + G + + V++ DV GV Y + R + K G+ +F +R Sbjct: 1 MIGYLNGTVAGIYKKTGNRVILYLDVNGVGYELQILPRMQNLDAKTGENLQVFTHLQVRD 60 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 D + L+GF S +R F L SV G+G ++A+ +L + +LV++I+ N+ ++ + PG Sbjct: 61 DLMVLYGFSSMAERDLFRQLVSVSGIGMQLAIALLDTLELPDLVQAIVGGNTGILTKTPG 120 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 + K A RI ELK K + A +L+ LGY Sbjct: 121 VGKKTAERITLELKTKLSEWRKQAGLPTVSTSNLSAE------IQEEVEMSLLALGYTSS 174 Query: 176 QATTAVVSVLK--KEKNIADDSQIIRLALRAI 205 + A+ ++ I+ A+ + Sbjct: 175 EVMQALTAITSHPNLAENNSAEDWIKYAISIL 206 >gi|283783300|ref|YP_003374054.1| Holliday junction DNA helicase RuvA [Gardnerella vaginalis 409-05] gi|283441415|gb|ADB13881.1| Holliday junction DNA helicase RuvA [Gardnerella vaginalis 409-05] Length = 209 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 62/210 (29%), Positives = 102/210 (48%), Gaps = 10/210 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G + + LI V GV Y Y P + LS L + G ++ + QD + L Sbjct: 1 MIGMLVGQVASIDARSALIVVSGVGYETYMPSQDLSSLHE-GQEVRVYTSLQVSQDALTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + ++ F+ +Q V G+G +VA+ +LS + L+++I + ++ PG+ K Sbjct: 60 YGFTTQAAKRMFLQVQKVSGIGPKVALSMLSTLNVDCLLQAISEGDVTSLSSAPGLGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELKG SL S + D S + + S I LV+LG+ Q A A Sbjct: 120 AQKIILELKG---SLDSSILADSSNDSTQSNKQIVDSSV-QCVIEGLVSLGWRQVDAQRA 175 Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205 V V + AD ++R+AL ++ Sbjct: 176 VEQVCADNNISTPISDADLPNVLRMALASL 205 >gi|116493020|ref|YP_804755.1| Holliday junction DNA helicase subunit RuvA [Pediococcus pentosaceus ATCC 25745] gi|122265516|sp|Q03EQ9|RUVA_PEDPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|116103170|gb|ABJ68313.1| Holliday junction DNA helicase subunit RuvA [Pediococcus pentosaceus ATCC 25745] Length = 195 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 44/205 (21%), Positives = 87/205 (42%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G + + Y+++DV GV +++ S ++ +FV + ++ L Sbjct: 1 MYEYLDGVVVNVNPAYIVVDVNGVGFLVNV-ANPYSF--ELDAKQKVFVHQAVSENDQTL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D++ F+ L V+G+G + A+ +L+ T L+ +I + + + P I K Sbjct: 58 YGFKKAEDKELFLNLLKVKGIGPKSALAILANDDHTGLINAINNDDVSYLKKFPKIGPKA 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + V + A+ AL+ LGY + + Sbjct: 118 AQQIILDLKGKV--------AVENEVGTLFDLSTTSNQALDEALEALIALGYSEKEVKKL 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + E+ Q I L+ + Sbjct: 170 TKKL--SEQTDRTTDQYISSGLKLL 192 >gi|196232552|ref|ZP_03131404.1| Holliday junction DNA helicase RuvA [Chthoniobacter flavus Ellin428] gi|196223314|gb|EDY17832.1| Holliday junction DNA helicase RuvA [Chthoniobacter flavus Ellin428] Length = 201 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 54/206 (26%), Positives = 97/206 (47%), Gaps = 7/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + +V+++V GV Y + P+ + L +G + +R+D L Sbjct: 1 MITFLEGTLAEALPTHVVVNVHGVGYHVQIPLSSYDKLPAVGASIKILTHLAIREDAHVL 60 Query: 61 FGFLSDLDRQWFMLLQS-VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GF+++ +R F LL + V G+G + A+ VLS T T +++ ++ ++A+ GI K Sbjct: 61 YGFMTNAERDLFRLLVTHVSGIGPKTALDVLSGTTVTNFKAAVVAGDAGLLAKTKGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ ELK K ++ + +A+ L+ LGY Q A Sbjct: 121 TAERIIVELKDKVGIAAAWEAASA------SHAPTPEEAKVTDAVLGLIALGYKQVDAHK 174 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 AV V +K ++R AL+ + Sbjct: 175 AVKQVQEKGGPAMTTEDLVRQALKIL 200 >gi|119509314|ref|ZP_01628464.1| Holliday junction DNA helicase motor protein [Nodularia spumigena CCY9414] gi|119466156|gb|EAW47043.1| Holliday junction DNA helicase motor protein [Nodularia spumigena CCY9414] Length = 213 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 55/213 (25%), Positives = 89/213 (41%), Gaps = 14/213 (6%) Query: 1 MIGKIKGNIEGLYE-----DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55 MI +KG + G+ + ++V + Y + P R L + G +F +R Sbjct: 1 MISYLKGIVAGIQTIGGGRMMLTLEVNNLGYDLQVPQRLAKQLPESGGVTQIFTHLQIRD 60 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 + L+GF S +R F L SV G+G A+ +L + +LV++II N++++ Q PG Sbjct: 61 EVPFLYGFASPAERDLFRQLLSVSGIGTACAIALLDTLEVPDLVQAIIAANTQILIQAPG 120 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 + K A RI ELK K + A P L LGY D Sbjct: 121 VGKKTAERICLELKTKLVEWR-------KSAGFFVATGGPAPGILEEVQMTLFALGYTAD 173 Query: 176 QATTAVVSVLKKEKNIAD--DSQIIRLALRAIS 206 + + A+ V + D I+ A+ +S Sbjct: 174 EVSHALHVVSEDIGLTKDAYVEDWIKQAIAHLS 206 >gi|167629898|ref|YP_001680397.1| holliday junction DNA helicase ruva [Heliobacterium modesticaldum Ice1] gi|167592638|gb|ABZ84386.1| holliday junction DNA helicase ruva [Heliobacterium modesticaldum Ice1] Length = 274 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 47/136 (34%), Positives = 81/136 (59%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + GL +D +L+DV GV Y ++ P L+ L ++G + + R+DQ+ L Sbjct: 1 MIAFLRGRLVGLGDDCLLLDVSGVGYRVFVPATMLASLPQVGRDILIHTFYYAREDQVSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL++ + +F LL V GVG +V +G+LS + E+ +II ++ + +IPGI K Sbjct: 61 YGFLTEEELAFFRLLLEVSGVGPKVGLGILSAYSVVEVQRAIIAEDVLALTRIPGIGRKT 120 Query: 121 ASRIMTELKGKAISLS 136 A R++ EL+ K + Sbjct: 121 AQRLVIELRDKLLKQG 136 Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 22/49 (44%) Query: 157 PSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 S A SAL LGY ++A A+V AD I+ ALR + Sbjct: 223 TSPRDEAFSALQVLGYTANEARDALVEAAALVPPDADVEAWIKGALRFL 271 >gi|187250915|ref|YP_001875397.1| Holliday junction resolvasome DNA binding subunit [Elusimicrobium minutum Pei191] gi|254766962|sp|B2KCD9|RUVA_ELUMP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|186971075|gb|ACC98060.1| Holliday junction resolvasome, DNA binding subunit [Elusimicrobium minutum Pei191] Length = 202 Score = 128 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 58/208 (27%), Positives = 93/208 (44%), Gaps = 11/208 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG +KG I L ED VLI V GV Y + C +S L + + E+ D L Sbjct: 1 MIGYLKGQILSLSEDSVLILVNGVGYEVNCAPVAVSALEEGQETALYIAESISPYDGTVL 60 Query: 61 FGFLSDLDRQ-WFMLLQSVQGVGARVAMGVLSR--ITATELVESIILQNSKVIAQIPGIS 117 +GFL+ D+Q W + S+ GA+ A+ L++ + + +I+ ++ K++ I G + Sbjct: 61 YGFLTKEDKQLWAIFKTSIPNTGAKKALEYLNKALRSVADFHNAIVKKDPKILTGIFGFT 120 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 K A +++ L GK ++ + I F + AL LGY +A Sbjct: 121 AKTAEKLIHSLDGKM--------DAVTIAGVPKIKIEGEAPFMSEVMMALTALGYSPMEA 172 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 A+ + K IIR ALR + Sbjct: 173 RKAIDQLYKTGLANDSVENIIRAALRIL 200 >gi|319940111|ref|ZP_08014465.1| Holliday junction ATP-dependent DNA helicase ruvA [Streptococcus anginosus 1_2_62CV] gi|319810825|gb|EFW07152.1| Holliday junction ATP-dependent DNA helicase ruvA [Streptococcus anginosus 1_2_62CV] Length = 196 Score = 128 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 94/205 (45%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG + + Y++++V + YI++ + G++ +FV +R+D L Sbjct: 1 MYEYFKGILSKITAKYIVVEVGQIGYILHV-ANPYAYSGQVNQEIQVFVHQVVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRTEDEKQLFLNLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK ++ +Q S A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVATGVAPKQ-------VAVAATSDNKELEEAMEAMLALGYKAAELKK- 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + A I+ AL+ + Sbjct: 172 IKKFFEGTNDTA--ENYIKSALKML 194 >gi|315221510|ref|ZP_07863430.1| Holliday junction DNA helicase RuvA [Streptococcus anginosus F0211] gi|315189344|gb|EFU23039.1| Holliday junction DNA helicase RuvA [Streptococcus anginosus F0211] Length = 196 Score = 128 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 46/206 (22%), Positives = 95/206 (46%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG + + Y++++V + YI++ + G++ +FV +R+D L Sbjct: 1 MYEYFKGILSKITAKYIVVEVGQIGYILHV-ANPYAYSGQVNQELQVFVHQVVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFRTEDEKQLFLNLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK ++ +Q S A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVATGVAPKQ-------VAVAATSDNQELEEAMEAMLALGYKAAE---- 168 Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205 + + K + D I+ AL+ + Sbjct: 169 LKKIKKFFEGTTDTAENYIKSALKML 194 >gi|317508678|ref|ZP_07966333.1| Holliday junction DNA helicase RuvA [Segniliparus rugosus ATCC BAA-974] gi|316252999|gb|EFV12414.1| Holliday junction DNA helicase RuvA [Segniliparus rugosus ATCC BAA-974] Length = 199 Score = 128 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 51/205 (24%), Positives = 93/205 (45%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + D+V+++ G+ Y + T + + GD L +R+D L Sbjct: 1 MIASVRGEAVEVGADHVVVECAGLGYHVVVLPST-AAMAARGDELRLVTSFIVREDAQTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F +L++V GVG ++AM VLS + +L +I + + ++PG+ ++ Sbjct: 60 YGFPDRETRDLFDVLRTVSGVGPKLAMAVLSVLEPAQLRRAIGEGDLAALTRVPGVGKRV 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ELK K + + + LV LG+ A +A Sbjct: 120 AERLALELKEKVGVGVGATGKPGAPEGS--------ALVRQQVVDGLVGLGFALKPAESA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 SVL ++++ A + +R AL + Sbjct: 172 ADSVLAEDQD-ASAAVALRGALAIL 195 >gi|259502857|ref|ZP_05745759.1| crossover junction endoribonuclease subunit A [Lactobacillus antri DSM 16041] gi|259169224|gb|EEW53719.1| crossover junction endoribonuclease subunit A [Lactobacillus antri DSM 16041] Length = 197 Score = 128 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 51/206 (24%), Positives = 88/206 (42%), Gaps = 10/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G I + Y+++DV GV Y + +FV +R D I L Sbjct: 1 MYEYLTGTISIVAPQYIVVDVHGVGYKLLV-ANPYRFHEDPATAVRVFVYQAVRDDDISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++Q FM L +V G+G + A+ +L+ LV++I N + + PGI K Sbjct: 60 FGFSDQAEKQLFMQLINVSGIGPKSALAILANPDHQGLVDAIANNNISYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LK K + +S D + + A+ A+ GY + Sbjct: 120 ASQIVLDLKDKLAAATSGSLFDQQTASDPANPALADALAALKAL------GYKDREVKKI 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + ++ + +R ALR ++ Sbjct: 174 GKQLGTQQ---QSTDEYLRQALRLLN 196 >gi|289449412|ref|YP_003475227.1| Holliday junction DNA helicase RuvA [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289183959|gb|ADC90384.1| Holliday junction DNA helicase RuvA [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 206 Score = 128 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 52/207 (25%), Positives = 88/207 (42%), Gaps = 12/207 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK--IGDFCTLFVETHMRQDQI 58 M I G + + V+I+ G+ Y + P L GD +F ++R+D Sbjct: 1 MYAYINGEYKYVDAGSVVIECNGIGYTLLMP-----KLPAWTAGDKVKVFTYLYVREDIF 55 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GF S F +L V +G ++A+ +L IT + +I+ + K++ I G+ Sbjct: 56 ELYGFASQEQLNLFKMLIGVNKIGPKLALQILGSITPEQFALAILRNDLKILTSIKGLGK 115 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNK--EQAHICSMPSFAINAISALVNLGYGQDQ 176 K A R++ +L+ K S + + + Q + + AL LGY Sbjct: 116 KNAERLVIDLRDKLKKAGSPSAKASTGLTSLETQEDTIDVADDFSAVVEALTLLGYDYKT 175 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALR 203 + +V E D +Q IRLALR Sbjct: 176 SVKQAKAVFDPE---LDLNQNIRLALR 199 >gi|114798884|ref|YP_758880.1| Holliday junction DNA helicase RuvA [Hyphomonas neptunium ATCC 15444] gi|114739058|gb|ABI77183.1| Holliday junction DNA helicase RuvA [Hyphomonas neptunium ATCC 15444] Length = 207 Score = 128 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 67/207 (32%), Positives = 112/207 (54%), Gaps = 5/207 (2%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 IG++KG + + D+VLIDV GV Y+ R L+ L + GD T +ET + + I LF Sbjct: 3 IGRLKGEVAAIGLDHVLIDVNGVGYVALAGTRLLARL-QTGDAITAHIETRVTESSITLF 61 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 F +D +R WF+ LQ V GV + A+ +L ++ +++++I L ++ + GI K+ Sbjct: 62 AFATDEERAWFVRLQDVPGVAGKSALAILDGLSPADIMDAIALGDAGAFTRAKGIGKKLG 121 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQA--HICSMPSFAINAISALVNLGYGQDQATT 179 RI+TEL GKA L + +++ V + + A+SALVNLGY Q +A Sbjct: 122 ERIVTELAGKAPPLGRFGKFEVAAVAGLASAQPASAATGARGEAVSALVNLGYSQSEAAR 181 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV + K + +++ AL+ ++ Sbjct: 182 AVAAAAKNGAE--EVGALVKGALKELA 206 >gi|126733600|ref|ZP_01749347.1| Holliday junction DNA helicase RuvA, putative [Roseobacter sp. CCS2] gi|126716466|gb|EBA13330.1| Holliday junction DNA helicase RuvA, putative [Roseobacter sp. CCS2] Length = 219 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 66/217 (30%), Positives = 104/217 (47%), Gaps = 12/217 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGKI G +E D+VLIDV+GV YI+Y R ++ L G+ LF + +R+D ++L Sbjct: 1 MIGKIAGRLEYRSTDHVLIDVRGVGYIVYVSERVMAGLTSNGEAVALFTDLLVREDNLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++W LL SVQG+GA+ +M +L + A + +I L + +A+ G+ K Sbjct: 61 FGFTTLVEKEWHRLLMSVQGIGAKASMAILGTLGAEGVSRAIALGDWNAVAKAKGVGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALV-----------N 169 A R+ ELK KA + ++ A N Sbjct: 121 AQRVTIELKDKAPGVMAMGGAVAEAQGDAVIEAEPTAPVQRAAAPKANAASAEALSALGN 180 Query: 170 LGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 LGY + V+ AD S +IR AL+ ++ Sbjct: 181 LGYAPG-EAASAVAEAAGAAPDADTSALIRAALKLLA 216 >gi|159027980|emb|CAO87940.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 209 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 54/213 (25%), Positives = 98/213 (46%), Gaps = 13/213 (6%) Query: 1 MIGKIKGNIEG--LYEDY---VLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMR 54 MI ++G + +++DV + Y I P R +GK D +F +R Sbjct: 1 MINYLRGQAIEVIKTPNNRLILILDVNQIGYEIQIPSRLALDIGKDNNDSRQIFTHLLLR 60 Query: 55 QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114 +DQ L+GF + +R F L SV GVGA++A+ ++ + ELV +I+ N+K++++ P Sbjct: 61 EDQPLLYGFGTAPERDLFRQLLSVNGVGAQLALALIDTLGIEELVVAIVTGNTKILSKTP 120 Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 G+ +K A RI ELK K + + + + I + L+ LGY Q Sbjct: 121 GVGLKTAERIALELKTKLAAWRQLKEATTTTTA-----ILPAAEILEDVQMTLLALGYSQ 175 Query: 175 DQATTAVVSVLKKEKNIADD--SQIIRLALRAI 205 ++ A+ + + + I+ A+ + Sbjct: 176 EEIDRAIAVLSQDALFSKNTQPEDWIKGAINWL 208 >gi|325686747|gb|EGD28773.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK72] Length = 218 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 92/206 (44%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG I + Y++++V + YI++ + G + ++V +R+D L Sbjct: 23 MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGHLHQEAKVYVHQVVREDAELL 81 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 82 YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + + + A+ A++ LGY + Sbjct: 142 AQQMVLDLEGKVVVADGPAES-------KAPVQIVDNQELEEAMEAMLALGYKAAE---- 190 Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205 + + K + D I+ AL+ + Sbjct: 191 LKKIKKFFEGTTDTAENYIKSALKML 216 >gi|313682066|ref|YP_004059804.1| holliday junction DNA helicase subunit ruva [Sulfuricurvum kujiense DSM 16994] gi|313154926|gb|ADR33604.1| Holliday junction DNA helicase subunit RuvA [Sulfuricurvum kujiense DSM 16994] Length = 187 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 21/205 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G IE V ++V GV Y ++ + T S +G + L +R+D +L Sbjct: 1 MIIGLDGIIEYKEPSSVHLNVNGVIYEVFISLHTYSSIGS--EKVKLHTHHVIREDAQQL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ F + + G+G + A+ + S T + I ++ + ++PGI K Sbjct: 59 YGFEQKSEKILFEGMLKINGIGPKAALAICSTFTPEQFAGIISSKDINALKKVPGIGPKS 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RIM EL G L + + A AL LG+ ++Q A Sbjct: 119 AGRIMVELAGFDAVLLGSG--------------ITATTATTEASMALEALGFKKEQIGKA 164 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + D + +++ AL+ + Sbjct: 165 LSA-----SGATDTAALVKDALKQL 184 >gi|295425862|ref|ZP_06818542.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus amylolyticus DSM 11664] gi|295064465|gb|EFG55393.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus amylolyticus DSM 11664] Length = 197 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 48/194 (24%), Positives = 89/194 (45%), Gaps = 11/194 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ-DQIR 59 M + G I + Y+++DV GV Y ++ P G ++VE + + Sbjct: 1 MFEYLDGTIAEISPSYIVVDVNGVGYKVFSPTPFAYHQ---GQKAKVYVEQNFSDNNGFT 57 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + F+ L SV G+G + A+ +++ + L E+I K + + PG+ K Sbjct: 58 LYGFQDKNAKGLFLKLLSVSGIGPKSALAIMAAEDSDSLAEAIEQGEVKYLTRFPGVGKK 117 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 AS+I+ +LKGK ++ +++ A + +A+ AL+ LGY Q + Sbjct: 118 TASQIVLDLKGKLGDY-------VNRLDRTVADNEEISPELHDALLALIALGYTQKEVNR 170 Query: 180 AVVSVLKKEKNIAD 193 + K + + AD Sbjct: 171 ITPKLEKIDTDSAD 184 >gi|293395808|ref|ZP_06640090.1| crossover junction endoribonuclease subunit A [Serratia odorifera DSM 4582] gi|291421745|gb|EFE94992.1| crossover junction endoribonuclease subunit A [Serratia odorifera DSM 4582] Length = 127 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 64/119 (53%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++GNI VL++ GV Y ++ P+ L ++G +F +R+D L Sbjct: 1 MIGRLRGNILEKQPPLVLLEANGVGYEVHMPMTCFYELPELGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GF +R F L V GVG ++A+ +LS ++A + V ++ + + ++PG+ K Sbjct: 61 YGFNDKQERALFRELIKVNGVGPKLALAILSGMSAQQFVSAVEREEITALVKLPGVGKK 119 >gi|108804162|ref|YP_644099.1| Holliday junction DNA helicase subunit RuvA [Rubrobacter xylanophilus DSM 9941] gi|123069128|sp|Q1AWE1|RUVA_RUBXD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|108765405|gb|ABG04287.1| Holliday junction DNA helicase subunit RuvA [Rubrobacter xylanophilus DSM 9941] Length = 196 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 96/205 (46%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + + V++D GV Y P+ TL L +G+ C + +R+D + L Sbjct: 1 MIDRLRGQLVEKDPEGVVVDCGGVGYRAAAPLSTLRALPAVGEECVVHTRMVVREDAMLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R+ F L SV VG R+A+ VLS +T +++E+ + A +PG+ K Sbjct: 61 FGFATREEREAFDALTSVSKVGPRLALAVLSAMTPGQMMEAAARGDVHRFAAVPGLGRKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+G+ + + + A AL LGY ++A A Sbjct: 121 AERLVLELRGR---------ELAAAGGGGGVAAGEGDGPFMEAREALTGLGYSLEEAERA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + V Q I+ ALR I Sbjct: 172 LRDV----PPQETVEQYIKAALRKI 192 >gi|256847966|ref|ZP_05553410.1| Holliday junction DNA helicase RuvA [Lactobacillus coleohominis 101-4-CHN] gi|256715026|gb|EEU30003.1| Holliday junction DNA helicase RuvA [Lactobacillus coleohominis 101-4-CHN] Length = 200 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 93/206 (45%), Gaps = 6/206 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G I + DY++I+V GV + + L + D ++V +R D I L Sbjct: 1 MYEYLLGTITEAHPDYLVIEVNGVGFRVQVANPYSYPLNE--DATKIYVYQAVRDDAISL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +++ F L +V G+G + A+ +L+ LVE+I N I + PGI K Sbjct: 59 FGFHNAEEKRLFTKLLAVSGIGPKSALAILANPDHEGLVEAIANNNVSYITKFPGIGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ EL+ K SL D+ ++ +A++AL LGY Sbjct: 119 ASRIIIELQDKVDSLLPTF--DLQPQVEQLPTNNQDNPELADALAALKALGYSAKDVKKV 176 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 S+ ++ Q +R L +S Sbjct: 177 ASSLKQE--GGLSTDQYLRKGLTLLS 200 >gi|152966998|ref|YP_001362782.1| Holliday junction DNA helicase RuvA [Kineococcus radiotolerans SRS30216] gi|151361515|gb|ABS04518.1| Holliday junction DNA helicase RuvA [Kineococcus radiotolerans SRS30216] Length = 209 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 50/210 (23%), Positives = 93/210 (44%), Gaps = 13/210 (6%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 I ++G + + D +++V GV ++ TL+ L ++G L +R+D + LF Sbjct: 6 IASVRGQVLAVRLDSAVVEVGGVGMLVLAAPATLAGL-RVGQEALLHTTLVVREDSLTLF 64 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF +++ F ++Q+ GVG R+A+ +L+ + ++ ++ + ++PGI K A Sbjct: 65 GFADADEKEVFEIVQTASGVGPRMALAMLAVHRPDGIRAAVAAEDHAALVRVPGIGKKTA 124 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 RI EL + A + + + + ALV LGY A V Sbjct: 125 QRICLELGDRL-------GPPSGTAAPVAAPLSAGDARREQVVEALVGLGYPLKHAGDVV 177 Query: 182 VSVLKKEK-----NIADDSQIIRLALRAIS 206 V+ + D + +R ALR +S Sbjct: 178 DVVVGATPDAGAADDLDVAATLRAALRHLS 207 >gi|315655417|ref|ZP_07908317.1| crossover junction ATP-dependent DNA helicase RuvA [Mobiluncus curtisii ATCC 51333] gi|315490357|gb|EFU79982.1| crossover junction ATP-dependent DNA helicase RuvA [Mobiluncus curtisii ATCC 51333] Length = 194 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 16/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + D + V G+ TL+ L G T+ +R+D + L Sbjct: 1 MISVIKGEVVSKKLDRATVLVGGLGLEFLATPNTLAALV-PGTTATVQTYLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L V+G+G ++ + LS ++ L ++ + + IPG+ K Sbjct: 60 YGFASPSERDTFATLMQVKGIGPKLGLAALSVLSPEALAAAVANSDVAALQGIPGVGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+ K +S V + + + AL NLGY Q AT A Sbjct: 120 AERMILEIGDKLGGVSGVAASTGATAGFNAST----------VVEALSNLGYNQAIATEA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +V + A +R AL+ + Sbjct: 170 VNAVSASDAPTA-----LREALKYL 189 >gi|257126622|ref|YP_003164736.1| Holliday junction DNA helicase RuvA [Leptotrichia buccalis C-1013-b] gi|257050561|gb|ACV39745.1| Holliday junction DNA helicase RuvA [Leptotrichia buccalis C-1013-b] Length = 207 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 106/207 (51%), Gaps = 4/207 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + DYV +D+ G+ Y IY ++T + I L++ T++++D I L Sbjct: 1 MFEYICGKLSVKKIDYVALDINGLAYKIYISLKTFEKMSNIESTEKLYIHTNVKEDNISL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F L SV GVG ++A+ +LS E+V+ I+ K+ ++PG+ +K Sbjct: 61 YGFKTQNERELFKALISVNGVGPKLAIAILSTFNTKEIVDIILENEPKIFIKVPGLGIKK 120 Query: 121 ASRIMTELKGKAISL--SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A +I+ +LK K L S ++ ++ + +N + + AL +LGY + Sbjct: 121 AQKIILDLKDKVKKLEFSEIINENSNTLNGNNISSSEILLMKEDLKLALESLGYADTDVS 180 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 + + + I + S+ I++ L+ I Sbjct: 181 KWIKN--DELIKIKNISEAIKIILKRI 205 >gi|125719033|ref|YP_001036166.1| Holliday junction DNA helicase RuvA [Streptococcus sanguinis SK36] gi|166231448|sp|A3CR11|RUVA_STRSV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|125498950|gb|ABN45616.1| Holliday junction DNA helicase ruvA, putative [Streptococcus sanguinis SK36] Length = 196 Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 94/206 (45%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG I + Y++++V + YI++ + G++ ++V +R+D L Sbjct: 1 MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGQLHQEAKVYVHQVVREDAELL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + S + + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVV-------AAGSPAESKAPVQTADNQELEEAMEAMLALGYKAAE---- 168 Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205 + + K + D I+ AL+ + Sbjct: 169 LKKIKKFFEGTTDTAENYIKSALKML 194 >gi|327472197|gb|EGF17634.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK408] Length = 218 Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 92/206 (44%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG I + Y++++V + YI++ + + ++V +R+D L Sbjct: 23 MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSSLVNQETQIYVHQVVREDAELL 81 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 82 YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 141 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + S + + A+ A++ LGY + Sbjct: 142 AQQMVLDLEGKVV-------AAGSPAESKAPVQTADNQELEEAMEAMLALGYKAAE---- 190 Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205 + + K + D I+ AL+ + Sbjct: 191 LKKIKKFFEGTTDTAENYIKSALKML 216 >gi|325479262|gb|EGC82358.1| Holliday junction DNA helicase RuvA [Anaerococcus prevotii ACS-065-V-Col13] Length = 195 Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 101/205 (49%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G I + ED +I+ + YII+ + TL+ + +I + ++ +R+D I L Sbjct: 1 MISYIIGQIRAINEDNFVIENNSMGYIIFSSLTTLTNI-EINNEYKIYTSMQVREDDISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+S + + F+ L SV +G + A+G+LS ++ E+ +I+ + + GI K Sbjct: 60 FGFISKDELEMFLHLTSVSTIGPKTALGILSSLSVNEIKNAILNNDINKLTVAKGIGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ EL K ++ ++ + + A AL+NLGY ++ Sbjct: 120 ASRIILELVDKVKKMN-------FVPIEKTEDVSVVNEDFDVAKEALLNLGYQKNDIDRV 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 ++ + E ++++ +L+ + Sbjct: 173 LLELKDNE---LSLEELVKESLKRL 194 >gi|227894652|ref|ZP_04012457.1| helicase Holliday junction [Lactobacillus ultunensis DSM 16047] gi|227863547|gb|EEJ70968.1| helicase Holliday junction [Lactobacillus ultunensis DSM 16047] Length = 195 Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 54/193 (27%), Positives = 90/193 (46%), Gaps = 11/193 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G I + YV++DV GV Y +Y P G +++E +R I L Sbjct: 1 MYEYFEGVISVITPSYVVVDVNGVGYKVYSPTPFAYKQ---GQKAKVYIEQVVRDTGITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S D+ F+ L SV G+G + AM +++ + L E+I K + + PG+ K Sbjct: 58 YGFQSQDDKGLFLKLLSVSGIGPKSAMAIMAAEDSNSLAEAIEQGEVKYLTRFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK + + + S + +A+ AL+ LGY Q + Sbjct: 118 ASQIVLDLKGKLGDYVARLDRTDSGE--------EISPALNDALLALIALGYTQKEVDRI 169 Query: 181 VVSVLKKEKNIAD 193 + K + + AD Sbjct: 170 TPKLEKVDADTAD 182 >gi|298346872|ref|YP_003719559.1| Holliday junction DNA helicase motor protein [Mobiluncus curtisii ATCC 43063] gi|304389423|ref|ZP_07371386.1| crossover junction ATP-dependent DNA helicase RuvA [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298236933|gb|ADI68065.1| Holliday junction DNA helicase motor protein [Mobiluncus curtisii ATCC 43063] gi|304327233|gb|EFL94468.1| crossover junction ATP-dependent DNA helicase RuvA [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 194 Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 16/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + D + V G+ TL+ L G T+ +R+D + L Sbjct: 1 MISVIKGEVVSKKLDRATVLVGGLGLEFLATPNTLATLV-PGTTATVQTYLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L V+G+G ++ + LS ++ L ++ + + IPG+ K Sbjct: 60 YGFASPSERDTFATLMQVKGIGPKLGLAALSVLSPEALAAAVANSDVAALQGIPGVGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+ K +S V + + + AL NLGY Q AT A Sbjct: 120 AERMILEIGDKLGGVSGVAASTGATAGFNAST----------VVEALSNLGYNQALATEA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +V + A +R AL+ + Sbjct: 170 VNAVSASDAPTA-----LREALKYL 189 >gi|315656670|ref|ZP_07909557.1| crossover junction ATP-dependent DNA helicase RuvA [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492625|gb|EFU82229.1| crossover junction ATP-dependent DNA helicase RuvA [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 194 Score = 127 bits (320), Expect = 8e-28, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 89/205 (43%), Gaps = 16/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + D + V G+ TL+ L G T+ +R+D + L Sbjct: 1 MISVIKGEVVSKKLDRATVLVGGLGLEFLATPNTLAALV-PGTTATVQTYLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F L V+G+G ++ + LS ++ L +++ + + IPG+ K Sbjct: 60 YGFASPSERDTFATLMQVKGIGPKLGLAALSVLSPEALAAAVVNSDVAALQGIPGVGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+ K +S V + + + AL NLGY Q AT A Sbjct: 120 AERMILEIGDKLGGVSGVAASTGATAGFNAST----------VVEALSNLGYNQALATEA 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +V + A +R AL+ + Sbjct: 170 VNAVSASDAPTA-----LREALKYL 189 >gi|327467941|gb|EGF13431.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK330] Length = 196 Score = 127 bits (319), Expect = 8e-28, Method: Composition-based stats. Identities = 43/206 (20%), Positives = 95/206 (46%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG I + Y++++V + YI++ + G++ ++V +R+D L Sbjct: 1 MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGRLHQEAKVYVHQVVREDAELL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ +++ F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFATEEEKKLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK ++ + + + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVAADGPAES-------KAPIQTADNQELEEAMEAMLALGYKAAE---- 168 Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205 + + K + D I+ AL+ + Sbjct: 169 LKKIKKFFEGTTDTAENYIKSALKML 194 >gi|297588495|ref|ZP_06947138.1| crossover junction ATP-dependent DNA helicase RuvA [Finegoldia magna ATCC 53516] gi|297573868|gb|EFH92589.1| crossover junction ATP-dependent DNA helicase RuvA [Finegoldia magna ATCC 53516] Length = 198 Score = 127 bits (319), Expect = 8e-28, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 92/205 (44%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G I ++E+Y++++ + Y ++ D ++ E R+D L Sbjct: 1 MYSYIIGVITEVHENYIVLENNKIGYKVFITD-FFRDNVSAFDEYKVYTEFVEREDASIL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S +R F LL V +G + AM +LS +T E +II + K++ Q PG+ K Sbjct: 60 YGFSSQKERDLFNLLTDVTSIGPKYAMNILSTMTVDECKTAIITDDIKLLTQAPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ ELK K D K S + A AL+ LGY ++ Sbjct: 120 ASRIILELKEKIEK-------DFVPSEKPVTKEVKKSSDSEFAREALLQLGYFKNDVDAF 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + + I++ A++++ Sbjct: 173 IEN---TDISGLSIEDIMKKAMKSL 194 >gi|332360160|gb|EGJ37974.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK1056] Length = 196 Score = 127 bits (319), Expect = 8e-28, Method: Composition-based stats. Identities = 43/206 (20%), Positives = 95/206 (46%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG + + Y++++V + YI++ + G++ ++V +R+D L Sbjct: 1 MYEYFKGIVSKITAKYIVLEVNSIGYILHV-ANPYAYSGRLHQEAKVYVHQVVREDAELL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK ++ + + + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVAADGLAES-------KAPVQTVDNQELEEAMEAMLALGYKATE---- 168 Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205 + + K + D I+ AL+ + Sbjct: 169 LKKIKKFFEGTTDTAENYIKSALKML 194 >gi|317124983|ref|YP_004099095.1| Holliday junction DNA helicase subunit RuvA [Intrasporangium calvum DSM 43043] gi|315589071|gb|ADU48368.1| Holliday junction DNA helicase subunit RuvA [Intrasporangium calvum DSM 43043] Length = 201 Score = 127 bits (319), Expect = 9e-28, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 97/205 (47%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + D V++ V GV +++ T + L +IG L +R+D + L Sbjct: 1 MIASLSGTVLKAGLDSVVVAVGGVGMLVHTTPATAAAL-RIGQPADLATTLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++ F +Q+V GVG R+A+ VL+ T + ++ + + ++PGI K Sbjct: 60 YGFATEEEKHVFETVQTVSGVGPRLALAVLAVHDPTSVRRALGSGDIAALTKVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ K +L+ + + ALV LG+ QA A Sbjct: 120 AERLVLELRDKLGALAGSSDGASIGHQRMDGE-----PWREQVREALVGLGWTVRQADDA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + V + + A S ++R ALR + Sbjct: 175 LDRVAPQAADGASVSAMLRAALREL 199 >gi|319956495|ref|YP_004167758.1| holliday junction DNA helicase subunit ruva [Nitratifractor salsuginis DSM 16511] gi|319418899|gb|ADV46009.1| Holliday junction DNA helicase subunit RuvA [Nitratifractor salsuginis DSM 16511] Length = 187 Score = 127 bits (319), Expect = 9e-28, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 89/205 (43%), Gaps = 21/205 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G +E ++ ++V G+ Y + + T S + L+V +R+D L Sbjct: 1 MIVGIEGKVEAREPTWLHLNVGGLIYEVNVSLNT-SNTVAGKEQVKLYVTQIIREDANLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +++ F L + GVG +VA V S T + + ++ ++ ++PGI K Sbjct: 60 FGFADRNEKKMFDTLLKINGVGPKVAQAVCSTFTPESFAKIVAAKDVALLKRVPGIGPKA 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ EL + S + A+ AL +LG+ ++ A Sbjct: 120 ASRILVELADFIV--------------DGSTAEGSAAADHQEAVMALESLGFKKEAIRKA 165 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + D + +++ AL+ + Sbjct: 166 LA------GESGDTATLVKAALKKL 184 >gi|269123417|ref|YP_003305994.1| Holliday junction DNA helicase RuvA [Streptobacillus moniliformis DSM 12112] gi|268314743|gb|ACZ01117.1| Holliday junction DNA helicase RuvA [Streptobacillus moniliformis DSM 12112] Length = 200 Score = 127 bits (319), Expect = 9e-28, Method: Composition-based stats. Identities = 61/202 (30%), Positives = 99/202 (49%), Gaps = 10/202 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G + +YV+ID+ GV Y IY I+T L IG+ L++ T +++D I Sbjct: 1 MYEYFEGILSVKNLNYVVIDINGVGYKIYTSIKTYDKLNSIGEKERLYIHTIVKEDDISF 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++L+R F+ ++ G+GA+ A+ +LS EL +N K +A++PGI MK Sbjct: 61 FGFKNELERSIFLECIAINGIGAKKAIAILSNFEFEELAAIASSKNFKELAKVPGIGMKK 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L K L I + + N AL +LGY + Sbjct: 121 AEKIMVDLSDKLEGLKITNSSS-------SQDIVELYNKKENLRLALESLGYEKVNINNI 173 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 + KE N+ ++I++AL Sbjct: 174 IEDKYIKELNM---QELIKMAL 192 >gi|258653556|ref|YP_003202712.1| Holliday junction DNA helicase RuvA [Nakamurella multipartita DSM 44233] gi|258556781|gb|ACV79723.1| Holliday junction DNA helicase RuvA [Nakamurella multipartita DSM 44233] Length = 207 Score = 127 bits (319), Expect = 9e-28, Method: Composition-based stats. Identities = 47/178 (26%), Positives = 86/178 (48%), Gaps = 5/178 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + ++ D+ +I+V GV + L+ L + G+ L+ +R+D + L Sbjct: 1 MISSVRGEVLAIHLDHAVIEVGGVGLAVRTTPAALAEL-RRGESARLWTTLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++ F L+QSV GVG ++A+ +L+ + EL ++ ++ + + PGI K Sbjct: 60 FGFTTTAGKELFELVQSVSGVGPKIALALLAVLDPDELRRALSAGDTATLCRAPGIGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 A R++ EL+ K + S + + ALV LG+ QA Sbjct: 120 AERLVLELRDKVGPVGSPAAGVAPVAGAASGSLA----WRPQVTDALVGLGFTAKQAE 173 >gi|87304141|ref|ZP_01086682.1| DNA recombination protein, RuvA [Synechococcus sp. WH 5701] gi|87281448|gb|EAQ73513.1| DNA recombination protein, RuvA [Synechococcus sp. WH 5701] Length = 197 Score = 127 bits (319), Expect = 9e-28, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 78/189 (41%), Gaps = 8/189 (4%) Query: 1 MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MIG ++G + VL+ GV Y + R L + TL++ R+D Sbjct: 1 MIGWLQGRHMECWTQGNRSGVLLVCAGVGYEVQLTSRHQKQL-QPDSELTLWIHQVQRED 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 LFGF +R F LL V GVG + + +L ELV +I + K + Q GI Sbjct: 60 GSSLFGFPCRQERDLFRLLIGVNGVGPQAGLALLHECKPQELVAAISGGDLKRLCQAQGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 + A R+ +L+ + + Q +P + + L++LGY + + Sbjct: 120 GKRTAERLAVDLRTPIAAFGGLDPQPSLVEG---LASEQIPEAGEDVEATLISLGYDELE 176 Query: 177 ATTAVVSVL 185 A+ ++ Sbjct: 177 IRRAIRAIA 185 >gi|315037644|ref|YP_004031212.1| Holliday junction DNA helicase RuvA [Lactobacillus amylovorus GRL 1112] gi|325956129|ref|YP_004286739.1| Holliday junction DNA helicase RuvA [Lactobacillus acidophilus 30SC] gi|312275777|gb|ADQ58417.1| Holliday junction DNA helicase RuvA [Lactobacillus amylovorus GRL 1112] gi|325332694|gb|ADZ06602.1| Holliday junction DNA helicase RuvA [Lactobacillus acidophilus 30SC] gi|327182937|gb|AEA31384.1| Holliday junction DNA helicase RuvA [Lactobacillus amylovorus GRL 1118] Length = 195 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 52/193 (26%), Positives = 90/193 (46%), Gaps = 11/193 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G I + Y+++DV GV Y +Y P G +++E +R I L Sbjct: 1 MYEYFEGIISVITPSYIVVDVNGVGYKVYSPTPFAYTQ---GQKAKVYIEQVVRDTGITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S D+ F+ L SV G+G + AM +++ + L E+I K + + PG+ K Sbjct: 58 YGFQSQDDKGLFLKLLSVSGIGPKSAMAIMAAEDSNSLAEAIEQGEVKYLTRFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK D + + + +A+ AL+ LGY Q + Sbjct: 118 ASQIVLDLKGKL--------GDYVARLDRKDNDEEISPALNDALLALIALGYTQKEVDRI 169 Query: 181 VVSVLKKEKNIAD 193 +++ + + AD Sbjct: 170 TPKLIEVDADTAD 182 >gi|312870465|ref|ZP_07730585.1| Holliday junction DNA helicase RuvA [Lactobacillus oris PB013-T2-3] gi|311094022|gb|EFQ52346.1| Holliday junction DNA helicase RuvA [Lactobacillus oris PB013-T2-3] Length = 197 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 51/206 (24%), Positives = 92/206 (44%), Gaps = 10/206 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G I + Y+++DVQGV Y + +FV +R D I L Sbjct: 1 MYEYLTGTISIVAPQYIVVDVQGVGYKLLV-ANPYRFHEDSAKAVRVFVYQAVRDDDISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +++ FM L +V G+G + A+ +L+ LV++I N + + PGI K Sbjct: 60 FGFSDQAEKRLFMQLINVSGIGPKSALAILANPDHQGLVDAIANNNIGYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LK K + ++ D V+ + A+ A+ GY + + Sbjct: 120 ASQIVLDLKDKLAAATAGSLFDPQPVSATANPALADALAALKAL------GYKEREVKKI 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + +++ + +R ALR ++ Sbjct: 174 GKQLGEEQ---QSTDEYLRQALRLLN 196 >gi|313892063|ref|ZP_07825661.1| Holliday junction DNA helicase RuvA [Dialister microaerophilus UPII 345-E] gi|329120927|ref|ZP_08249559.1| crossover junction ATP-dependent DNA helicase RuvA [Dialister micraerophilus DSM 19965] gi|313119515|gb|EFR42709.1| Holliday junction DNA helicase RuvA [Dialister microaerophilus UPII 345-E] gi|327471386|gb|EGF16837.1| crossover junction ATP-dependent DNA helicase RuvA [Dialister micraerophilus DSM 19965] Length = 200 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 54/202 (26%), Positives = 96/202 (47%), Gaps = 10/202 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG IKG + + ++ G+ Y I+ L ++G+ L+ +R+D I+L Sbjct: 1 MIGYIKGTVTTFEKQACFVETSGIGYRIFISDIDKEKL-RVGENIKLYTYMAVREDAIQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ F++L SV +G +VAMG+LS I +I ++ V+ ++PGI K Sbjct: 60 YGFIEKESYDLFLILISVSKIGPKVAMGILSSIDINSFCNAIQKKSISVLTKLPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK K ++ V + S A+ L +LGY + + Sbjct: 120 AERLVLELKDKI------AVSNVENVESDTESSTSGTVPENEAVMILKSLGYQEYEIMPV 173 Query: 181 VVSVLKKEKNIADDSQIIRLAL 202 + S+ K+ K+ +++R L Sbjct: 174 LKSIKKEFKDPM---ELVRAVL 192 >gi|152990842|ref|YP_001356564.1| Holliday junction DNA helicase RuvA [Nitratiruptor sp. SB155-2] gi|166230575|sp|A6Q3Z8|RUVA_NITSB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|151422703|dbj|BAF70207.1| holliday junction DNA helicase RuvA [Nitratiruptor sp. SB155-2] Length = 184 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 90/205 (43%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + Y+ I+V GV Y ++ + + + K L +R+D L Sbjct: 1 MIVGLVGEVLKKEPTYLHIEVGGVVYEVFISLNASAAIDK--KQIRLHTTHIIREDSESL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ +++ F L + GVG +VA+ + S E V+ + +N ++ ++PGI K Sbjct: 59 YGFVDINEKKMFDRLIKLNGVGPKVAIAICSTFKPQEFVQIVQQKNVAMLKKVPGIGPKS 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL + + S A AL +LG+ ++Q A Sbjct: 119 AQRILVELGEF-----------------DISESNVTSSAFQEASMALQSLGFKKEQIQKA 161 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +E D + +++ AL+ I Sbjct: 162 L-----QECTATDTASLVKEALKKI 181 >gi|302344655|ref|YP_003809184.1| Holliday junction DNA helicase RuvA [Desulfarculus baarsii DSM 2075] gi|301641268|gb|ADK86590.1| Holliday junction DNA helicase RuvA [Desulfarculus baarsii DSM 2075] Length = 193 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 110/206 (53%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +++G + D+V++DV GV Y ++ + L + G+ +L T +R D I L Sbjct: 1 MIARLRGQLAARRPDHVVVDVGGVGYRVFVSLGAFCRLPQSGE-ISLLTHTIVRDDAIHL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+++ + + F LL SV GVG ++A+ +LS + EL +I ++ +A+ PG+ K Sbjct: 60 YGFINEQEWEAFRLLVSVAGVGPKLALAILSGLEVGELWAAIRAGDAARLAKTPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +L G+ V ++ A + + A +A SAL NLGY + +A A Sbjct: 120 AGRLVVDLAGRLP------------VGEQPAAAVAPGTAADDAQSALCNLGYPEAKAKKA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V L + A ++RLAL+ ++ Sbjct: 168 VDKALAVAGDGAALEDLLRLALKELA 193 >gi|293375246|ref|ZP_06621530.1| Holliday junction DNA helicase RuvA [Turicibacter sanguinis PC909] gi|325840674|ref|ZP_08167125.1| Holliday junction DNA helicase RuvA [Turicibacter sp. HGF1] gi|292646144|gb|EFF64170.1| Holliday junction DNA helicase RuvA [Turicibacter sanguinis PC909] gi|325490238|gb|EGC92572.1| Holliday junction DNA helicase RuvA [Turicibacter sp. HGF1] Length = 195 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 46/204 (22%), Positives = 89/204 (43%), Gaps = 21/204 (10%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 +KG + +D+V+I+V G+ Y +Y + + +F + ++ + L+ Sbjct: 11 YAYLKGTVAYSAKDFVVIEVAGIGYKVY-TANPYEF--RKDEATQVFTHQVVSENDLSLY 67 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF + + F+ L S +G+G + A +L+ + L +I ++K + + P I K A Sbjct: 68 GFKTLEEHDLFINLISARGIGPKTACAILAMKDMSGLRHAIENGDAKYLCKFPKIGPKTA 127 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 +I+ +LKGK + + + A+ AL LGYG + T V Sbjct: 128 QQIILDLKGKLV---------------VPDAAIFVNNSLSEALEALQALGYGDKELTK-V 171 Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205 + K A +II+ L+ + Sbjct: 172 KNAFKD--TDASVDEIIKKGLQLL 193 >gi|58617428|ref|YP_196627.1| Holliday junction DNA helicase RUVA [Ehrlichia ruminantium str. Gardel] gi|75356743|sp|Q5FG40|RUVA_EHRRG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|58417040|emb|CAI28153.1| Holliday junction DNA helicase RUVA [Ehrlichia ruminantium str. Gardel] Length = 191 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 112/207 (54%), Gaps = 18/207 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ-IR 59 MIG I GN+E + + Y++++V + YIIY + L K+GD L++ET++ +D + Sbjct: 1 MIGSITGNVEEIRDSYIILNVGNIGYIIYVSHKVLQT-CKVGDNIKLYIETYVNRDNITQ 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL+ ++ +F +L ++ G+ + A+ +LS+++ ++ +++ + + GI K Sbjct: 60 LYGFLNRQEQDYFKMLVTINGINYKTALSILSKLSPEQIFSAVVNNDKIAF-KGNGIGEK 118 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 +A RI+TEL+ K NK ++++AL++LGY + +A Sbjct: 119 LAGRIITELQYKI--------------NKMPIEETFSIIENDDSLAALISLGYEKLKAFN 164 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 + + K + A ++IR AL+ +S Sbjct: 165 VIQEIKSKTPD-ASTQEVIRKALQKLS 190 >gi|294790877|ref|ZP_06756035.1| holliday junction DNA helicase RuvA [Scardovia inopinata F0304] gi|294458774|gb|EFG27127.1| holliday junction DNA helicase RuvA [Scardovia inopinata F0304] Length = 209 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 56/210 (26%), Positives = 98/210 (46%), Gaps = 10/210 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G+I + D ++IDV GV + + R + L G + + +D + L Sbjct: 1 MIASLEGDILSIEPDGIVIDVNGVGFSVRMSARDTAQLHA-GSHERIITLMTVSRDALSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ F+ LQ V G+G RVAM +LS ++A EL +I + + + PG+ K Sbjct: 60 YGFLNPSSKKLFIQLQKVSGIGPRVAMAILSTLSAEELATAIRDNDVTALTRAPGLGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ EL G + Q+ + + I LV+LG+ Q A A Sbjct: 120 AQKIILELHGTIDFTNLDPDQEQAAGH----DTEKQDHNMRQVILGLVSLGWQQRDAFGA 175 Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205 +K+ + D +++R AL + Sbjct: 176 TKEAMKQLSLGEPLDAQDVPRVLRTALSDL 205 >gi|325832047|ref|ZP_08165144.1| Holliday junction DNA helicase RuvA [Eggerthella sp. HGA1] gi|325486368|gb|EGC88820.1| Holliday junction DNA helicase RuvA [Eggerthella sp. HGA1] Length = 205 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 97/205 (47%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + G I+V GV Y + +LS L + G + +R D + L Sbjct: 1 MIAFLKGTLAGKTATTAYIEVNGVGYAVGMSQASLSKLPEAGAPVEVHTFLQVRDDALAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ F L V GVG +VA+ LS + LV ++ Q+ + +IPG+ K Sbjct: 61 YGFLALEEKALFERLIGVGGVGPKVALAALSAFSPAGLVAAVQAQDVAAVQRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ ELKG + ++ + A + + AL+++G+ ++A A Sbjct: 121 ASRIILELKG-------SFDEGLASLFDGAAPAAASAANLAGTREALLSMGFTSEEADVA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 LK A + +++ AL+ + Sbjct: 174 ----LKGAPEGASEGVLLQYALKRL 194 >gi|315658088|ref|ZP_07910960.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus lugdunensis M23590] gi|315496417|gb|EFU84740.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus lugdunensis M23590] Length = 203 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 102/205 (49%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + L+ +V+++ QG+ Y I P + T++ +R+D L Sbjct: 2 MYAYIKGQLTQLFPTHVVVETQGIGYEIQTP-NSYRFQQFYYQEVTIYTSLIVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+++ +++ F+ L V G+G + A+ +L+ T E+ +I +N + + PGI K Sbjct: 61 YGFINEEEKEMFLNLIKVTGIGPKSALAILATSTPNEVKRAIEDENDAYLTKFPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + + S + ++ ++ A+ AL LGY + + + Sbjct: 121 ARQIILDLKGKVN--YTEASSNDSIHIDDVSNTSQKDNYIAEALLALEALGYSKREISKV 178 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 ++ ++ + + +++ L+A+ Sbjct: 179 EKTLQQQV--VTSVDEAVKIGLQAL 201 >gi|225619866|ref|YP_002721123.1| Holliday junction DNA helicase RuvA [Brachyspira hyodysenteriae WA1] gi|225214685|gb|ACN83419.1| Holliday junction DNA helicase RuvA [Brachyspira hyodysenteriae WA1] Length = 192 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 48/206 (23%), Positives = 97/206 (47%), Gaps = 16/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I+G ++ + E + + GV Y I + K D L+ + R+D + L Sbjct: 1 MFAFIEGKVQIISEGVIALLCNGVGYEIIVSKK---LDVKNDDNIRLYTKLIHREDAMIL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ F L S GVG ++AM VLS + +L+ + ++ ++ ++ G+ +K Sbjct: 58 YGFLTREEKNMFTTLMSASGVGPKLAMEVLSTYSINDLMHILFNKDINLLKKVSGMGVKK 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ EL+ K + + + + I AL++LG+ ++A A Sbjct: 118 AEKLLFELRDKIEKIDINISPSV-----------ISNDNESDVIKALISLGFSNNEAVKA 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + ++ + K+ +I ALR +S Sbjct: 167 LSAI--ENKDNMTTEDLISNALRNLS 190 >gi|294101862|ref|YP_003553720.1| Holliday junction DNA helicase RuvA [Aminobacterium colombiense DSM 12261] gi|293616842|gb|ADE56996.1| Holliday junction DNA helicase RuvA [Aminobacterium colombiense DSM 12261] Length = 201 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 48/208 (23%), Positives = 100/208 (48%), Gaps = 13/208 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ ++G + + E+ V++DV G+ + I C L L + + L + ++ L Sbjct: 1 MLRSLEGKVLHIGEENVILDVNGLGFDILCSGSAL-RLCEDNETIRLTTYLQVSENGATL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S+ +R+ F+ L +V+GVG RV + VL ++ T+++ S+ ++ Q+PG+ K Sbjct: 60 FGFSSEQEREVFIKLLTVKGVGGRVGLAVLRTLSPTQVIRSVATSDTDTFLQVPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ELK + + +AL +LG+ Q++ + Sbjct: 120 AERLCFELKRHLSE---------EMLAEFAEEEVPSILVKNTVAAALRSLGFTQNEVYSV 170 Query: 181 VVSVLKKEKNIADDSQ---IIRLALRAI 205 + + ++ + D ++ +++ ALR + Sbjct: 171 MNRLKREMGSEFDTTKEDILLKRALREL 198 >gi|325697267|gb|EGD39153.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus sanguinis SK160] Length = 196 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 95/206 (46%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG I + Y++++V + YI++ + G++ ++V +R+D L Sbjct: 1 MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGQLHQEAKVYVHQVVREDTELL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK ++ + + + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVAADGPSES-------KAPVQTADNQELEEAMEAMLALGYKVAE---- 168 Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205 + + K + D I+ AL+ + Sbjct: 169 LKKIKKFFEGTTDTAENYIKSALKML 194 >gi|289550593|ref|YP_003471497.1| Holliday junction DNA helicase RuvA [Staphylococcus lugdunensis HKU09-01] gi|289180125|gb|ADC87370.1| Holliday junction DNA helicase RuvA [Staphylococcus lugdunensis HKU09-01] Length = 202 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 101/205 (49%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + L+ +V+++ QG+ Y I P + T++ +R+D L Sbjct: 1 MYAYIKGQLTQLFPTHVVVETQGIGYEIQTP-NSYRFQQFYNQAVTIYTSLIVREDAQLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+++ +++ F+ L V G+G + A+ +L+ T E+ +I +N + + PGI K Sbjct: 60 YGFINEEEKEMFLNLIKVTGIGPKSALAILATSTPNEVKRAIEDENDAYLTKFPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK + + S + + ++ A+ AL LGY + + + Sbjct: 120 ARQIILDLKGKVN--YTEASSNDSIHIDDISSTSQKDNYIAEALLALEALGYSKREISKV 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 ++ ++ + + +++ L+++ Sbjct: 178 EKTLQQQV--VTSVDEAVKIGLQSL 200 >gi|169350138|ref|ZP_02867076.1| hypothetical protein CLOSPI_00880 [Clostridium spiroforme DSM 1552] gi|169292921|gb|EDS75054.1| hypothetical protein CLOSPI_00880 [Clostridium spiroforme DSM 1552] Length = 186 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 42/205 (20%), Positives = 94/205 (45%), Gaps = 21/205 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G I + D+++++ G+ Y+IY G +++ ++++D + L Sbjct: 1 MYSYIIGKIVEINVDHIVVENNGIGYLIYVS-NPYEF--TKGKEIKVYLYQYVKEDVLLL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +++ F+ L V+G+G + A+G+L+ ++ +I + + +IPGI K Sbjct: 58 YGFKTIEEKEMFLKLILVKGIGCKTAIGILATGDLERIISAIETNDVNYLKKIPGIGPKA 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +L+GK + ++ A+ L+ LGY + + A Sbjct: 118 AKQIILDLQGKFNDVPITIKT---------------NDDLQEALEVLIALGYRKVEVEKA 162 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + D + ++ AL + Sbjct: 163 LKVLADEN---LDTNGYVKRALSLL 184 >gi|157150589|ref|YP_001451298.1| Holliday junction DNA helicase RuvA [Streptococcus gordonii str. Challis substr. CH1] gi|189045776|sp|A8AZT8|RUVA_STRGC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|157075383|gb|ABV10066.1| Holliday junction DNA helicase RuvA [Streptococcus gordonii str. Challis substr. CH1] Length = 196 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 94/206 (45%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG I + Y++++V + YI++ + G + ++V +R+D L Sbjct: 1 MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGHLHQEAKVYVHQVVREDAELL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK ++ + + + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVAADGLAES-------KAPVQTVDNQELEEAMEAMLALGYKATE---- 168 Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205 + + K + D I+ AL+ + Sbjct: 169 LKKIKKFFEGTTDTAENYIKSALKML 194 >gi|331668556|ref|ZP_08369404.1| holliday junction DNA helicase RuvA [Escherichia coli TA271] gi|331063750|gb|EGI35661.1| holliday junction DNA helicase RuvA [Escherichia coli TA271] gi|332756762|gb|EGJ87109.1| holliday junction DNA helicase RuvA [Shigella flexneri 4343-70] Length = 123 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 63/119 (52%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKK 119 >gi|327450649|gb|EGE97303.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL087PA3] Length = 194 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 50/200 (25%), Positives = 94/200 (47%), Gaps = 10/200 (5%) Query: 9 IEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLD 68 + +V++D GV + CP T + +I +L +R++ + L+GF+ D Sbjct: 2 VSAAGPTWVVLDNHGVGIKVLCPPATAAS-ARINQDMSLHTSLVVREESLTLYGFVEADD 60 Query: 69 RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 R F L+Q+ GVG ++A ++S + A +L +I ++ + ++PGI K A++++ EL Sbjct: 61 RDAFELVQTASGVGPKLAAAIMSVLDAAQLATAITEEDDATLCRVPGIGRKGAAKMILEL 120 Query: 129 KGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV--LK 186 K K +L+ + + + LV LG+ A AV V LK Sbjct: 121 KDKVAALTPRGASVSGAPH-------VVAPWREQVAEGLVGLGWSAKDAEKAVDKVAALK 173 Query: 187 KEKNIADDSQIIRLALRAIS 206 + ++R ALR+++ Sbjct: 174 EADPAMTIGNLMRAALRSLA 193 >gi|317488563|ref|ZP_07947108.1| Holliday junction DNA helicase RuvA [Eggerthella sp. 1_3_56FAA] gi|316912305|gb|EFV33869.1| Holliday junction DNA helicase RuvA [Eggerthella sp. 1_3_56FAA] Length = 197 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 98/205 (47%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + I+V GV Y + +LS L + G + +R D + L Sbjct: 1 MIAFLKGVLAAKTATTAFIEVNGVGYAVGMSQASLSKLPEAGAAVEVHTFLQVRDDGLSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ ++ F L V GVG +VA+ LS + LV ++ Q+ + +IPG+ K Sbjct: 61 FGFLTLEEKALFERLIGVGGVGPKVALAALSAFSPAGLVAAVQAQDVAAVQRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ ELKG + ++ + E A + + AL+++G+ ++A A Sbjct: 121 ASRIILELKG-------SFDEGLAGLFDEAAPAVASAANLAGTREALLSMGFTSEEADVA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 LK A +S +++ AL+ + Sbjct: 174 ----LKGAPEGAAESVLLQYALKRL 194 >gi|296111820|ref|YP_003622202.1| Holliday junction DNA helicase RuvA [Leuconostoc kimchii IMSNU 11154] gi|295833352|gb|ADG41233.1| Holliday junction DNA helicase RuvA [Leuconostoc kimchii IMSNU 11154] Length = 196 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 52/206 (25%), Positives = 98/206 (47%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 M I G I +Y Y++I D GV Y ++ + ++VE +R++ I Sbjct: 1 MYEYINGLITNIYPAYLVICDRSGVGYKLFA-ANPYRF--EQNVESHVYVEQIVRENDIA 57 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 ++GF+ + ++ F L +V G+G + A+ +L+ AT LV ++ ++ + Q PG+ K Sbjct: 58 MYGFIDENEKILFNKLLNVSGIGPKSALAILASDDATGLVNAVANDDASYLTQFPGVGKK 117 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I+ +LKGK L+ +S + + +A+ AL +LGY + Sbjct: 118 TAQQIVLDLKGKLDDLA------ISAGVQGPTREQNTNQALSDALEALESLGYSAKEVAK 171 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + L +++ D IR AL+ + Sbjct: 172 -LEKTLASQQDTTDG--YIRSALKLL 194 >gi|314955639|gb|EFT00041.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL027PA1] Length = 194 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 50/200 (25%), Positives = 94/200 (47%), Gaps = 10/200 (5%) Query: 9 IEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLD 68 + +V++D GV + CP T + +I +L +R++ + L+GF+ D Sbjct: 2 VSAAGPTWVVLDNHGVGIKVLCPPATAAS-ARINQDMSLHTSLVVREESLTLYGFVEADD 60 Query: 69 RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 R F L+Q+ GVG ++A ++S + A +L +I ++ + ++PGI K A++++ EL Sbjct: 61 RDVFELVQTASGVGPKLAAAIMSVLDAAQLATAITEEDDATLCRVPGIGRKGAAKMILEL 120 Query: 129 KGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV--LK 186 K K +L+ + + + LV LG+ A AV V LK Sbjct: 121 KDKVAALTPRGASVSGATH-------VVAPWREQVAEGLVGLGWSAKDAEKAVDKVAALK 173 Query: 187 KEKNIADDSQIIRLALRAIS 206 + ++R ALR+++ Sbjct: 174 EADPAMTIGNLMRAALRSLA 193 >gi|118586981|ref|ZP_01544413.1| Holliday junction DNA helicase [Oenococcus oeni ATCC BAA-1163] gi|118432603|gb|EAV39337.1| Holliday junction DNA helicase [Oenococcus oeni ATCC BAA-1163] Length = 194 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 91/205 (44%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G I+ + YV IDV G+ + ++ P D T+F E +R ++I L Sbjct: 1 MYDFLTGIIKTITAGYVGIDVNGIGFRVFTPNPYEYNQ---NDQTTIFTEQIVRDNEISL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L +V G+G + A+ +++ L+ ++ K + + PGI K Sbjct: 58 YGFKTVEERNLFQKLLNVSGIGPKSALAIIAGGDRDGLIAAVENGKPKYLTKFPGIGNKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK S + ++ + +A++ALV LG+ + Sbjct: 118 AQQIVLDLKGKLGDFSKNIAP--------MKNLLENSAELDDALAALVALGFSSKEVNK- 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + L + I+ L+ + Sbjct: 169 INPKLASLGEL-TTDAYIQKGLKLL 192 >gi|323165015|gb|EFZ50805.1| holliday junction DNA helicase RuvA [Shigella sonnei 53G] Length = 123 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 63/119 (52%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y ++ P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GF + +R F L GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKK 119 >gi|296272620|ref|YP_003655251.1| Holliday junction DNA helicase RuvA [Arcobacter nitrofigilis DSM 7299] gi|296096794|gb|ADG92744.1| Holliday junction DNA helicase RuvA [Arcobacter nitrofigilis DSM 7299] Length = 186 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 51/205 (24%), Positives = 95/205 (46%), Gaps = 21/205 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I G I + IDV G+ Y ++ + S + I + +L +R+D L Sbjct: 1 MIVGINGKIIRKEPTLLHIDVNGLVYEVFVSVNCSSKI--IENNVSLHTTYIIREDSQAL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+ +++ F + + GVG +VA+ + S T + + + + ++ ++PGI K Sbjct: 59 YGFIDVNEKKLFDTVIKINGVGPKVALAICSTFTPSSFSQIVSSNDISMLKRVPGIGPKG 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ EL G I + S+ + + A AL +LG+ +D + A Sbjct: 119 ASRILVELSGFVI--------------DGNSDEDSVGTNMMEASMALESLGFKKDVISKA 164 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + S + + S ++R AL+ + Sbjct: 165 LKS-----CSATNTSDLVREALKKL 184 >gi|330718512|ref|ZP_08313112.1| Holliday junction DNA helicase RuvA [Leuconostoc fallax KCTC 3537] Length = 196 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 87/205 (42%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G I + Y++++ G+ Y + ++E +R+ +I L Sbjct: 1 MYEYINGLITLVEPAYLVVENNGIGYRLNI-ANPYRF--TEKTSRIFYIEQIVRETEISL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +++ F L V G+G + A+ +L+ +A L ++ + + Q PG+ K Sbjct: 58 YGFADASEKKLFNKLLDVSGIGPKSALAILASDSAIGLASAVENDDVSYLTQFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK L S + +Q H +A+ AL+ LGY Sbjct: 118 AQQIILDLKGKLDDLVSAADAPEQSIVSKQDH-----RALDDALDALIALGYTSRDV-KM 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + L + + IR AL+ + Sbjct: 172 IGKKL--DGVVDTTDGYIRQALKLL 194 >gi|170077885|ref|YP_001734523.1| Holliday junction DNA helicase RuvA [Synechococcus sp. PCC 7002] gi|229560135|sp|B1XL12|RUVA_SYNP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|169885554|gb|ACA99267.1| Holliday junction DNA helicase RuvA [Synechococcus sp. PCC 7002] Length = 209 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 15/214 (7%) Query: 1 MIGKIKGNIEGLYED-----YVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMR 54 M +KG ++ + +++++V+ + Y I P R L IG +FV + R Sbjct: 1 MFSYLKGEAIAIHRNLQGRFFLILEVRDIGYEIQVPGRLAQELAAAIGQPQHIFVHSQQR 60 Query: 55 QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114 +D L+GF S R F L SV G+GA+ A+ +L +T ELV++I+ + + +A+ P Sbjct: 61 EDGTYLYGFASAAARDLFRQLISVSGIGAQGAIALLDTLTLPELVQAIVTADHRQLAKAP 120 Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 GI K A R+ EL+ K + + + L+ LGY + Sbjct: 121 GIGKKTAERLALELRSKLSQWRDQFSLPDTA-------AQPNAAVHEDLELTLLALGYQE 173 Query: 175 DQATTAVVSVLKK--EKNIADDSQIIRLALRAIS 206 + A+ ++ + + + IR A+ +S Sbjct: 174 TEIRGAIATLSQDSILLQNDNADEWIRRAITLLS 207 >gi|46199998|ref|YP_005665.1| holliday junction DNA helicase ruvA [Thermus thermophilus HB27] gi|55980260|ref|YP_143557.1| Holliday junction DNA helicase RuvA [Thermus thermophilus HB8] gi|20455264|sp|Q9F1Q3|RUVA_THET8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|81405352|sp|Q72GZ9|RUVA_THET2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|24987359|pdb|1IXR|A Chain A, Ruva-Ruvb Complex gi|24987360|pdb|1IXR|B Chain B, Ruva-Ruvb Complex gi|11559438|dbj|BAB18786.1| Holliday junction binding protein [Thermus thermophilus] gi|46197625|gb|AAS82038.1| holliday junction DNA helicase ruvA [Thermus thermophilus HB27] gi|55771673|dbj|BAD70114.1| Holliday junction DNA helicase RuvA [Thermus thermophilus HB8] Length = 191 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 91/205 (44%), Gaps = 15/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + ++ GV + + P L L + G + ++++ + L Sbjct: 1 MIRYLRGLVLKKEAGGFVLLAGGVGFFLQAPTPFLQAL-EEGKEVGVHTHLLLKEEGLSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + F LL SV GVG +VA+ +LS + L +++ +++++ G+ ++ Sbjct: 60 YGFPDEENLALFELLLSVSGVGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI ELKGK A A A+ AL LG+ + QA Sbjct: 120 AERIALELKGKVPP-------------HLLAGEKVESEAAEEAVMALAALGFKEAQARAV 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+ +L + A +I+ AL+ + Sbjct: 167 VLDLLAQNPK-ARAQDLIKEALKRL 190 >gi|313764321|gb|EFS35685.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL013PA1] gi|313772296|gb|EFS38262.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL074PA1] gi|313792007|gb|EFS40108.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL110PA1] gi|313802043|gb|EFS43277.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL110PA2] gi|313807654|gb|EFS46141.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL087PA2] gi|313810161|gb|EFS47882.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL083PA1] gi|313812811|gb|EFS50525.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL025PA1] gi|313815859|gb|EFS53573.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL059PA1] gi|313818691|gb|EFS56405.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL046PA2] gi|313820461|gb|EFS58175.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL036PA1] gi|313822733|gb|EFS60447.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL036PA2] gi|313825333|gb|EFS63047.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL063PA1] gi|313827628|gb|EFS65342.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL063PA2] gi|313830492|gb|EFS68206.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL007PA1] gi|313833528|gb|EFS71242.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL056PA1] gi|313838864|gb|EFS76578.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL086PA1] gi|314915311|gb|EFS79142.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL005PA4] gi|314918138|gb|EFS81969.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL050PA1] gi|314920215|gb|EFS84046.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL050PA3] gi|314925070|gb|EFS88901.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL036PA3] gi|314931738|gb|EFS95569.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL067PA1] gi|314958035|gb|EFT02138.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL002PA1] gi|314960393|gb|EFT04495.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL002PA2] gi|314962663|gb|EFT06763.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL082PA1] gi|314967471|gb|EFT11570.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL037PA1] gi|314973492|gb|EFT17588.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL053PA1] gi|314976172|gb|EFT20267.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL045PA1] gi|314978569|gb|EFT22663.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL072PA2] gi|314983806|gb|EFT27898.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL005PA1] gi|314987987|gb|EFT32078.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL005PA2] gi|314989797|gb|EFT33888.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL005PA3] gi|315077879|gb|EFT49930.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL053PA2] gi|315080504|gb|EFT52480.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL078PA1] gi|315084175|gb|EFT56151.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL027PA2] gi|315085518|gb|EFT57494.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL002PA3] gi|315088425|gb|EFT60401.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL072PA1] gi|315096039|gb|EFT68015.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL038PA1] gi|315098667|gb|EFT70643.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL059PA2] gi|315101330|gb|EFT73306.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL046PA1] gi|327326319|gb|EGE68109.1| holliday junction DNA helicase RuvA [Propionibacterium acnes HL096PA2] gi|327330390|gb|EGE72139.1| holliday junction DNA helicase RuvA [Propionibacterium acnes HL097PA1] gi|327331806|gb|EGE73543.1| holliday junction DNA helicase RuvA [Propionibacterium acnes HL096PA3] gi|327443583|gb|EGE90237.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL013PA2] gi|327445787|gb|EGE92441.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL043PA2] gi|327448230|gb|EGE94884.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL043PA1] gi|327453274|gb|EGE99928.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL092PA1] gi|327454013|gb|EGF00668.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL083PA2] gi|328753271|gb|EGF66887.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL025PA2] gi|328753338|gb|EGF66954.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL020PA1] gi|328754067|gb|EGF67683.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL087PA1] gi|328760719|gb|EGF74285.1| holliday junction DNA helicase RuvA [Propionibacterium acnes HL099PA1] Length = 194 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 50/200 (25%), Positives = 94/200 (47%), Gaps = 10/200 (5%) Query: 9 IEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLD 68 + +V++D GV + CP T + +I +L +R++ + L+GF+ D Sbjct: 2 VSAAGPTWVVLDNHGVGIKVLCPPATAAS-ARINQDMSLHTSLVVREESLTLYGFVEADD 60 Query: 69 RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 R F L+Q+ GVG ++A ++S + A +L +I ++ + ++PGI K A++++ EL Sbjct: 61 RDAFELVQTASGVGPKLAAAIMSVLDAAQLATAITEEDDATLCRVPGIGRKGAAKMILEL 120 Query: 129 KGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV--LK 186 K K +L+ + + + LV LG+ A AV V LK Sbjct: 121 KDKVAALTPRGASVSGATH-------VVAPWREQVAEGLVGLGWSAKDAEKAVDKVAALK 173 Query: 187 KEKNIADDSQIIRLALRAIS 206 + ++R ALR+++ Sbjct: 174 EADPAMTIGNLMRAALRSLA 193 >gi|257790728|ref|YP_003181334.1| Holliday junction DNA helicase RuvA [Eggerthella lenta DSM 2243] gi|257474625|gb|ACV54945.1| Holliday junction DNA helicase RuvA [Eggerthella lenta DSM 2243] Length = 197 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 98/205 (47%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + I+V G+ Y + LS L + G + +R D + L Sbjct: 1 MIAFLKGVLAAKTATTAYIEVNGIGYAVGMSQAGLSKLPEAGAAVEVHTFLQVRDDGLAL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ ++ F L V GVG +VA+ LS + LV ++ Q+ + +IPG+ K Sbjct: 61 FGFLTLEEKALFERLIGVGGVGPKVALAALSAFSPAGLVAAVQAQDVAAVQRIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ ELKG + ++ + E A + + + AL+++G+ ++A A Sbjct: 121 ASRIILELKG-------SFDEGLAGLFDEAAPVVASAANLAGTREALLSMGFTSEEADVA 173 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 LK A +S +++ AL+ + Sbjct: 174 ----LKGAPEGAAESVLLQYALKRL 194 >gi|159037423|ref|YP_001536676.1| Holliday junction DNA helicase RuvA [Salinispora arenicola CNS-205] gi|189045766|sp|A8LXW8|RUVA_SALAI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|157916258|gb|ABV97685.1| Holliday junction DNA helicase RuvA [Salinispora arenicola CNS-205] Length = 200 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 99/206 (48%), Gaps = 11/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + D+ +I+V GV + C T++ L ++G L +R+D + L Sbjct: 1 MIASVRGVVTATGPDHAVIEVGGVGLAVQCAPGTIADL-RVGQPARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D + F LLQ+ GVG R+A VL+ T + +I ++ + ++PGI K Sbjct: 60 YGFADDNAKALFELLQTASGVGPRLAQAVLAVHTPETVRAAIANADTAALTRVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ + + V + A + ++ ALV LG+ QA A Sbjct: 120 AERLVLELRDRIGPV---------PVGGDGAAGVTTGAWPEQVRQALVGLGWTAGQAEQA 170 Query: 181 VVSVLKK-EKNIADDSQIIRLALRAI 205 V +V + + + ++R A+R + Sbjct: 171 VAAVAETVDGEVPPVPVLLRQAIRLL 196 >gi|169333981|ref|ZP_02861174.1| hypothetical protein ANASTE_00373 [Anaerofustis stercorihominis DSM 17244] gi|169258698|gb|EDS72664.1| hypothetical protein ANASTE_00373 [Anaerofustis stercorihominis DSM 17244] Length = 199 Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 95/205 (46%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 M IKG++ + E Y+ I+ GV +++ T + L + ++ +R++ + Sbjct: 1 MFDYIKGDVTDIREGYLTIENKSGVGFLLNVSENTATDLINDREDVKVYTYMAVRENDVS 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF + +R+ F L +V +G ++A+ +LS ++ +V +I+ ++ K + G+ K Sbjct: 61 LFGFSTLFEREIFFKLLTVPKIGPKIALSILSALSPNMIVAAIMNKDYKSLCTANGVGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I+ L+ K L + + ++ +N AI L +LG+ + A Sbjct: 121 AAEQIVVTLQDKFGDLPEIEEITVNDMN-------INNDLKDEAILGLTSLGFDRAYAAK 173 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 V + + I+ LAL+ Sbjct: 174 IVREI--SVDDDLTIEDILSLALQK 196 >gi|296127494|ref|YP_003634746.1| Holliday junction DNA helicase RuvA [Brachyspira murdochii DSM 12563] gi|296019310|gb|ADG72547.1| Holliday junction DNA helicase RuvA [Brachyspira murdochii DSM 12563] Length = 194 Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 48/206 (23%), Positives = 102/206 (49%), Gaps = 14/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I+GN++ + E + + GV Y I + K D L+ + ++D + L Sbjct: 1 MFAFIEGNVQIISEGVIALVCNGVGYEIIVSKKLE---VKNDDKIRLYTQLIHKEDAMIL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ +++ F L + GVG ++AM +LS + +L+ + ++ ++ ++ G+ +K Sbjct: 58 YGFLTREEKKMFSTLIAASGVGPKLAMEILSTYSINDLMHILFNKDINLLKKVQGMGLKK 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ EL+ K + +N + + + + I AL++LG+ ++A A Sbjct: 118 AEKLLFELRDKIEKID---------INISSSSVQNYNDNESDVIKALISLGFSNNEAVKA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + S+ + K+ +I ALR +S Sbjct: 169 LSSI--ENKDNMSAEDLISNALRNLS 192 >gi|238063870|ref|ZP_04608579.1| Holliday junction DNA helicase subunit ruvA [Micromonospora sp. ATCC 39149] gi|237885681|gb|EEP74509.1| Holliday junction DNA helicase subunit ruvA [Micromonospora sp. ATCC 39149] Length = 200 Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 101/206 (49%), Gaps = 11/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + D+ +++V GV ++C TL+ L +IG L +R+D + L Sbjct: 1 MIASVRGTVTATGPDHAVVEVGGVGLAVHCAPGTLAEL-RIGQPARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +Q F LLQ+ GVG R+A VL+ T + ++I ++ + ++PGI K Sbjct: 60 YGFADDDAKQLFELLQTASGVGPRLAQAVLAVHTPDAVRKAIANADTAALTRVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ + + V + A + ++ ALV LG+ QA A Sbjct: 120 AERLVLELRDRIGPV---------PVGADGAAGVTGGAWPDQVRQALVGLGWTAGQADQA 170 Query: 181 VVSVLKK-EKNIADDSQIIRLALRAI 205 V +V + + +++ A+R + Sbjct: 171 VAAVAETVDGPPPPVPVLLKQAIRLL 196 >gi|16330186|ref|NP_440914.1| Holliday junction DNA helicase RuvA [Synechocystis sp. PCC 6803] gi|3122847|sp|P73554|RUVA_SYNY3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|1652674|dbj|BAA17594.1| Holliday junction DNA helicase; RuvA [Synechocystis sp. PCC 6803] Length = 211 Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 52/214 (24%), Positives = 91/214 (42%), Gaps = 13/214 (6%) Query: 1 MIGKIKGNIEGLYED-----YVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMR 54 MI ++G + + ++ ++++ V GV Y + P + +F +R Sbjct: 1 MIQFLQGQVVTVTKNIQNRWFLILSVNGVGYELQVPHSLAQQWTPPPPEPQQVFTHLLVR 60 Query: 55 QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114 QDQI LFGF +R F L V G+GA++A+ ++ + LV++++ N K + Q P Sbjct: 61 QDQIALFGFGRLAERDLFGQLMGVTGIGAQLAIALIETLGLEGLVQAVVTGNVKQLCQTP 120 Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 G+ K A R+ ELK K + + + + L+ LGY Q Sbjct: 121 GVGKKGAERLALELKTKLSQWHKLQMGTGETDST-----LPTTALLEDLEMTLLALGYTQ 175 Query: 175 DQATTAVVSVLK--KEKNIADDSQIIRLALRAIS 206 + A+ V + D IR A+ +S Sbjct: 176 TEIQQAIAMVSQVPDVAQSEDPEVWIRQAIGWLS 209 >gi|315108548|gb|EFT80524.1| holliday junction DNA helicase RuvA protein [Propionibacterium acnes HL030PA2] Length = 194 Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 50/200 (25%), Positives = 93/200 (46%), Gaps = 10/200 (5%) Query: 9 IEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLD 68 + +V++D GV + CP T + +I +L +R++ + L+GF+ D Sbjct: 2 VSAAGPTWVVLDNHGVGIKVLCPPATAAS-ARINQDMSLHTSLVVREESLTLYGFVEADD 60 Query: 69 RQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 R F L+Q+ GVG ++A ++S + A +L +I ++ + +PGI K A++++ EL Sbjct: 61 RDAFELVQTASGVGPKLAAAIMSVLDAAQLATAITEEDDATLCSVPGIGRKGAAKMILEL 120 Query: 129 KGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV--LK 186 K K +L+ + + + LV LG+ A AV V LK Sbjct: 121 KDKVAALTPRGASVSGATH-------VVAPWREQVAEGLVGLGWSAKDAEKAVDKVAALK 173 Query: 187 KEKNIADDSQIIRLALRAIS 206 + ++R ALR+++ Sbjct: 174 EADPAMTIGNLMRAALRSLA 193 >gi|255263783|ref|ZP_05343125.1| holliday junction DNA helicase RuvA [Thalassiobium sp. R2A62] gi|255106118|gb|EET48792.1| holliday junction DNA helicase RuvA [Thalassiobium sp. R2A62] Length = 220 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 72/218 (33%), Positives = 114/218 (52%), Gaps = 13/218 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGKI G I+ D+VLIDV+GV Y++Y R ++ L G+ LF + +R+D ++L Sbjct: 1 MIGKIAGRIDYRAADHVLIDVRGVGYVVYVSDRVMASLPGNGEAVALFTDLLVREDNLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++W LL SVQG+GA+ +M +L I A + +I L + IA G+ K Sbjct: 61 FGFTTLVEKEWHRLLMSVQGIGAKASMAILGAIGAEGVSRAIALGDWAAIATAKGVGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI------------CSMPSFAINAISALV 168 A R + +LK KA ++ ++ + +A + A+SAL Sbjct: 121 AQRAVLDLKNKAHAVMAMGGTLAEAQGEVEAEGEVIETAAPKVTRSGNGAAQSEALSALG 180 Query: 169 NLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 NLGY A AV + AD S++IR AL+ ++ Sbjct: 181 NLGYSPSDAAGAVAEASGGAPD-ADTSELIRAALKLLA 217 >gi|328465569|gb|EGF36798.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes 1816] Length = 175 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 47/179 (26%), Positives = 84/179 (46%), Gaps = 4/179 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + +Y++++ + Y I S G +F+ H+R+D I L Sbjct: 1 MYDYIKGTVTTITPEYIVVEAGQIGYQI-ITGNPFSFQRLEGTEAQVFLYQHVREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F L SV G+G + A+ +++ L+ +I ++ + + P + K Sbjct: 60 FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLISAIESEDDVYLTKFPSVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I+ +LKGK L+ VV ++ V E + + A+ AL LGY + Sbjct: 120 ARQIILDLKGK---LADVVASEIVYVAPENDMVAGLSPQLEEAVLALEALGYSTRELKK 175 >gi|28493235|ref|NP_787396.1| holliday junction DNA helicase RuvA [Tropheryma whipplei str. Twist] gi|28476276|gb|AAO44365.1| holliday junction DNA helicase RuvA [Tropheryma whipplei str. Twist] Length = 222 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 109/205 (53%), Gaps = 15/205 (7%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 I + G +E + V++++ G+ +++ P S ++ L+ +R+D + L+ Sbjct: 30 IASLSGLLEAVRPGSVVVNMHGIGFLVRVP---QSFNPEVDAEVKLYTSLQVREDSVSLY 86 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF S L+ F L ++ GVG RVA+ +LS +T E+ +++ + K + ++ G+ K+A Sbjct: 87 GFASVLECTVFEQLITISGVGPRVALAILSVLTPAEVAAAVLEGDDKPLQRVSGVGKKLA 146 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 I+ +L GK S+ ++ V++ + + AL+ LG+ + ++ AV Sbjct: 147 GTIVLQLAGKLTSVPLENRKQEQAVDR-----------SAEIVQALIGLGWQRQESAAAV 195 Query: 182 VSVLKKEKNIADDSQIIRLALRAIS 206 SVL+K++++ +I+R ALR ++ Sbjct: 196 ESVLEKDQSL-TMPEILRNALRYLA 219 >gi|116490641|ref|YP_810185.1| Holliday junction resolvasome, DNA-binding subunit [Oenococcus oeni PSU-1] gi|122277175|sp|Q04GA2|RUVA_OENOB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|116091366|gb|ABJ56520.1| Holliday junction DNA helicase subunit RuvA [Oenococcus oeni PSU-1] Length = 194 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 91/205 (44%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G I+ + YV IDV G+ + ++ P D T+F E +R +QI L Sbjct: 1 MYDFLTGIIKTIAAGYVGIDVNGIGFRVFTPNPYEYNQ---NDQTTIFTEQIVRDNQISL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R F L +V G+G + A+ +++ L+ ++ K + + PGI K Sbjct: 58 YGFKTVKERNLFQKLLNVSGIGPKSALAIIAGGDRDGLIAAVENGKPKYLTKFPGIGNKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK S + ++ + +A++ALV LG+ + Sbjct: 118 AQQIVLDLKGKLGDFSKNIAP--------MKNLLENSAELDDALAALVALGFSSKEVNK- 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + L + I+ L+ + Sbjct: 169 INPKLASLGEL-TTDAYIQKGLKLL 192 >gi|308235709|ref|ZP_07666446.1| Holliday junction ATP-dependent DNA helicase ruvA [Gardnerella vaginalis ATCC 14018] gi|311114741|ref|YP_003985962.1| crossover junction ATP-dependent DNA helicase RuvA [Gardnerella vaginalis ATCC 14019] gi|310946235|gb|ADP38939.1| crossover junction ATP-dependent DNA helicase RuvA [Gardnerella vaginalis ATCC 14019] Length = 212 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 62/211 (29%), Positives = 105/211 (49%), Gaps = 9/211 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G IE + LI V GV Y +Y P L+ L + G ++ + QD + L Sbjct: 1 MIGMLNGVIESVDSRCALICVSGVGYEVYMPSSDLAALHE-GQDVKVYTSLQVSQDAVTL 59 Query: 61 FGFLSDLDRQWFMLL-QSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GF S ++ F+ + Q V GVG +VA+ +LS + L+++I + ++ PG+ K Sbjct: 60 YGFTSMPAKRIFLQIQQKVSGVGPKVALSLLSTLNVNRLLQAIADGDITALSSAPGLGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I+ ELKG S + +D + + + S + L++LG+ Q A Sbjct: 120 GAQKIVLELKGSID--VSQLNEDDTSKDSKSYKKEFDESGISKVVDGLMSLGWKQSDAQR 177 Query: 180 AVVSVLKKEK-----NIADDSQIIRLALRAI 205 AV +V EK + +D ++R+AL A+ Sbjct: 178 AVENVCNSEKIALPISDSDMPNVLRMALAAL 208 >gi|296393859|ref|YP_003658743.1| Holliday junction DNA helicase RuvA [Segniliparus rotundus DSM 44985] gi|296181006|gb|ADG97912.1| Holliday junction DNA helicase RuvA [Segniliparus rotundus DSM 44985] Length = 199 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 88/205 (42%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + D+V+++ G+ + + T + G L +R+D L Sbjct: 1 MIASIRGEAVEVGADHVVVECAGLGHHVVVLPSTAAA-ATRGAEVRLATSFIVREDAQTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F +L++V GVG ++AM VLS + L +I + + ++PG+ ++ Sbjct: 60 YGFPDRETRDLFDVLRTVSGVGPKLAMAVLSVLEPVALRRAIGEGDLGALTKVPGVGKRV 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ELK K S + + LV LG+ A +A Sbjct: 120 AERLALELKEKIGGPPSAAANLGAPEGS--------ALVRQQVVDGLVGLGFPLKPAESA 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 SV+++ A + +R AL + Sbjct: 172 ADSVMQENPE-ASPAVALRGALAIL 195 >gi|227510189|ref|ZP_03940238.1| Holliday junction DNA helicase RuvA [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227513117|ref|ZP_03943166.1| Holliday junction DNA helicase RuvA [Lactobacillus buchneri ATCC 11577] gi|227083692|gb|EEI19004.1| Holliday junction DNA helicase RuvA [Lactobacillus buchneri ATCC 11577] gi|227190394|gb|EEI70461.1| Holliday junction DNA helicase RuvA [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 198 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 91/205 (44%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G I + Y+++ V G+ Y+IY ++V + I L Sbjct: 1 MYEFMDGQIVDITPAYIVLLVNGIGYLIY-TADPYRFNVDQNKTIRVYVYQSVSDSAILL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D++ F L +V G+G + A+ +L+ + LV +I ++ K + + PG+ K Sbjct: 60 YGFYEADDKKLFEKLIAVSGIGPKSALAILAGNDRSGLVSAISNKDVKFLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +L+GK LS +VQ +AISAL LGY Q A Sbjct: 120 AQQIILDLQGKVGDLSQIVQARSGQ------SASEQSDELRDAISALEALGYSAKQID-A 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + L K+K + + L L+ + Sbjct: 173 IRLELGKDK-ALTTDEYLSLGLKLL 196 >gi|212715818|ref|ZP_03323946.1| hypothetical protein BIFCAT_00719 [Bifidobacterium catenulatum DSM 16992] gi|212661185|gb|EEB21760.1| hypothetical protein BIFCAT_00719 [Bifidobacterium catenulatum DSM 16992] Length = 210 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 53/210 (25%), Positives = 96/210 (45%), Gaps = 14/210 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G ++ + +I+V GV Y P L+ + G ++ ++ QD I L Sbjct: 6 MIGMLHGQVDSIDAASAIIEVGGVGYETRMPSADLASMHA-GQTVKVYTSLNVSQDAITL 64 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++ F+ LQ V G+G +VA+ +LS + L ++ ++ +A+ PG+ K Sbjct: 65 YGFSSLASKRMFLQLQKVSGIGPKVALSLLSTLPPERLARAVADGDATALAKAPGLGKKG 124 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELKG + + + + L++LG+ Q A A Sbjct: 125 AQKIILELKGSI--------DLSQIEGASPETRSTEDTGSEQVVEGLMSLGWRQQDAVHA 176 Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205 V V + D +++RLAL ++ Sbjct: 177 VQEVCESNHIDIPLGDDDVPRVLRLALASL 206 >gi|32266013|ref|NP_860045.1| Holliday junction DNA helicase RuvA [Helicobacter hepaticus ATCC 51449] gi|44888424|sp|Q7VIU0|RUVA_HELHP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|32262062|gb|AAP77111.1| holliday junction DNA helicase RuvA [Helicobacter hepaticus ATCC 51449] Length = 196 Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 52/211 (24%), Positives = 97/211 (45%), Gaps = 20/211 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG-----KIGDFCTLFVETHMRQ 55 MI ++G I L Y IDV GV Y + + S L + + +R+ Sbjct: 1 MIVGLRGTIIRLEPMYAEIDVGGVIYGMQMSLNATSMLQTKIDSQPDAPVKIICAQIIRE 60 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 D LFGF ++++Q F L + GVG +VA+ +LS T T + I ++ + + ++PG Sbjct: 61 DAHLLFGFCEEIEKQTFERLIKISGVGPKVAIAILSTYTPTHFAKIIADKDIEALKKVPG 120 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 I +K A++IM ++ G L + ++ I + A AL +LG+ ++ Sbjct: 121 IGVKGAAKIMVDIAGFFAQL----------LQSQEESIAPSNNLKYEASLALQSLGFKRN 170 Query: 176 QATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 + + + S+I++ AL+ ++ Sbjct: 171 EIQKVLEHI-----EALSVSEIVKEALKRLA 196 >gi|311064395|ref|YP_003971120.1| holliday junction DNA helicase RuvA [Bifidobacterium bifidum PRL2010] gi|310866714|gb|ADP36083.1| RuvA Holliday junction DNA helicase [Bifidobacterium bifidum PRL2010] Length = 205 Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 53/210 (25%), Positives = 92/210 (43%), Gaps = 14/210 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + +I+V GV Y + G +F + QD + L Sbjct: 1 MISTLTGRVESVEASSAVIEVHGVGYEVRM-AAADLAALHAGQETHVFTSLTISQDAVTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLS ++ F+ LQ V G+G +VA+ +LS + L +++ ++ +++ PG+ K Sbjct: 60 FGFLSPASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLAKAVADGDTAALSKAPGLGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ EL G+ + D S A I LV+LG+ A A Sbjct: 120 AQKIILELAGRIDLDQIRPEAD--------GPSESRDPGARQVIEGLVSLGWRPQTAEEA 171 Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205 V + D ++++LAL ++ Sbjct: 172 VRQACDAASIATPISAEDVPRVLKLALSSL 201 >gi|172036123|ref|YP_001802624.1| Holliday junction DNA helicase RuvA [Cyanothece sp. ATCC 51142] gi|226698729|sp|B1WUV7|RUVA_CYAA5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|171697577|gb|ACB50558.1| Holliday junction DNA helicase [Cyanothece sp. ATCC 51142] Length = 212 Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 48/214 (22%), Positives = 97/214 (45%), Gaps = 13/214 (6%) Query: 1 MIGKIKG---NIEGLYEDYV--LIDVQGVCYIIYCPIRTLSCLGKIG-DFCTLFVETHMR 54 MI +KG + + V +++V + Y + P + + + D +F ++ Sbjct: 1 MISYLKGSPIEVIKNTNNRVILVLEVNEIGYELQIPSKLGREISQEKLDTIQIFTHVQIK 60 Query: 55 QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114 +DQ L+GF + +R+ F L SV G+GA+ A+ ++ + ELV++I+ N ++++Q Sbjct: 61 EDQQILYGFSTTAERELFRQLISVSGIGAQSAIALIDTLGLEELVQAIVTGNIRILSQPS 120 Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 GI K A RI EL+ K +V ++ + L+ LGY Sbjct: 121 GIGRKTAERIALELRTKLSQWRKMVGVTVTSSAAM-----PSLEILEDIEMTLLALGYTN 175 Query: 175 DQATTAVVSVLKKE--KNIADDSQIIRLALRAIS 206 ++ A+ ++ + + + I+ A+ +S Sbjct: 176 EEINKAISTLSQDNLMLKNTNTEEWIKEAIAWLS 209 >gi|322386544|ref|ZP_08060171.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus cristatus ATCC 51100] gi|321269463|gb|EFX52396.1| crossover junction ATP-dependent DNA helicase RuvA [Streptococcus cristatus ATCC 51100] Length = 204 Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 43/206 (20%), Positives = 92/206 (44%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG I + Y++++V + YI++ + + ++V +R+D L Sbjct: 9 MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSSLVNQETQIYVHQVVREDAQLL 67 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 68 YGFATEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 127 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK ++ + + A+ A++ LGY + Sbjct: 128 AQQMVLDLEGKVVAADGPAES-------KAPVQTVDNQELEEAMEAMLALGYKAAE---- 176 Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205 + + K + D I+ AL+ + Sbjct: 177 LKKIKKFFEGTTDTAENYIKSALKML 202 >gi|320528322|ref|ZP_08029484.1| Holliday junction DNA helicase RuvA [Solobacterium moorei F0204] gi|320131236|gb|EFW23804.1| Holliday junction DNA helicase RuvA [Solobacterium moorei F0204] Length = 198 Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 103/205 (50%), Gaps = 14/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + D+V+++ + Y L + D ++ H+ ++ + L Sbjct: 4 MIAFVKGKVASYGADWVVVNCHDIGY--QMAYPHPENL-HLNDEVFIYTYLHITENDMSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF S ++ F+ L SV+G+G + AMG+LS+ +V +I + ++ ++PGI K Sbjct: 61 FGFESQDEKALFLKLISVKGLGPKTAMGMLSKCGYQSIVSAIESGDVTLLKKMPGIGAKS 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK +S+ + + S P+ A+ L NLGY Q + +A Sbjct: 121 ASQIVLDLKGKLVSV---------PTSSPKQDTVSYPAEIREALDGLKNLGYKQGE-LSA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V +++ + + + ++L L+ + Sbjct: 171 VANMMSENPGL-TTEKYLKLGLQFL 194 >gi|224283112|ref|ZP_03646434.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium bifidum NCIMB 41171] gi|313140261|ref|ZP_07802454.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium bifidum NCIMB 41171] gi|313132771|gb|EFR50388.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium bifidum NCIMB 41171] Length = 205 Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 53/210 (25%), Positives = 92/210 (43%), Gaps = 14/210 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + +I+V GV Y + G +F + QD + L Sbjct: 1 MISTLTGRVESVEASSAVIEVHGVGYEVRM-AAADLAALHAGQETHVFTSLTISQDAVTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLS ++ F+ LQ V G+G +VA+ +LS + L +++ ++ +++ PG+ K Sbjct: 60 FGFLSPASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLAKAVADGDTAALSKAPGLGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ EL G+ + D S A I LV+LG+ A A Sbjct: 120 AQKIILELAGRIDLDQIRPEAD--------GPSESRDPGAKQVIEGLVSLGWRPQTAEEA 171 Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205 V + D ++++LAL ++ Sbjct: 172 VRQACDAASIATPISAEDVPRVLKLALSSL 201 >gi|291276652|ref|YP_003516424.1| Holliday junction DNA helicase [Helicobacter mustelae 12198] gi|290963846|emb|CBG39682.1| holliday junction DNA helicase [Helicobacter mustelae 12198] Length = 184 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 92/205 (44%), Gaps = 21/205 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + L +L+DV V Y I+ + L + + +++ +R+D L Sbjct: 1 MIFALKGKVFALEPAKLLLDVHDVIYEIHISFGSAEEL-QGKEEALVYISQIIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF++ +++Q F L + GVG +VA+ +LS +A E + I ++ + ++PG+ K Sbjct: 60 FGFVTPMEKQIFDTLIKINGVGPKVALAILSTFSAQEFMAVIERKDIAALQKVPGVGTKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM EL G + L A AL NLGY + A Sbjct: 120 AGKIMVELSGAYVEL---------------LPKKDHTEHFQQAEMALENLGYKRAAIQKA 164 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + S+ II+ AL+ + Sbjct: 165 LKSIKASN-----VQDIIKEALKLL 184 >gi|166363769|ref|YP_001656042.1| Holliday junction DNA helicase RuvA [Microcystis aeruginosa NIES-843] gi|189045757|sp|B0JRV0|RUVA_MICAN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166086142|dbj|BAG00850.1| holliday junction DNA helicase [Microcystis aeruginosa NIES-843] Length = 209 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 53/213 (24%), Positives = 100/213 (46%), Gaps = 13/213 (6%) Query: 1 MIGKIKGNIEG--LYEDY---VLIDVQGVCYIIYCPIRTLSCLGKIG-DFCTLFVETHMR 54 MI ++G + +++DV + Y I P R +G D C +F +R Sbjct: 1 MINYLRGQAIEVIKTPNNRLILILDVNQIGYEIQIPSRLALDIGNNNNDSCQIFTHLLLR 60 Query: 55 QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114 ++Q L+GF + +R+ F L SV GVGA++A+ ++ + ELV +I+ N+K++++ P Sbjct: 61 EEQPLLYGFGTAPERELFRQLLSVNGVGAQLALALIDTLGIEELVVAIVTGNTKILSKTP 120 Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 G+ +K A RI ELK K + + + + I + + L+ LGY Q Sbjct: 121 GVGLKTAERIALELKTKLAAWRQLREATTTITA-----ILPAAAILEDVQMTLLALGYSQ 175 Query: 175 DQATTAVVSVLKKEKNIADD--SQIIRLALRAI 205 ++ A+ + + + I+ A+ + Sbjct: 176 EEIDRAMAVLSQDALFSKNTQPEDWIKGAINWL 208 >gi|228475171|ref|ZP_04059897.1| holliday junction DNA helicase RuvA [Staphylococcus hominis SK119] gi|314936245|ref|ZP_07843592.1| holliday junction DNA helicase RuvA [Staphylococcus hominis subsp. hominis C80] gi|228270782|gb|EEK12184.1| holliday junction DNA helicase RuvA [Staphylococcus hominis SK119] gi|313654864|gb|EFS18609.1| holliday junction DNA helicase RuvA [Staphylococcus hominis subsp. hominis C80] Length = 201 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 50/206 (24%), Positives = 103/206 (50%), Gaps = 8/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 M IKG++ L+ +++++ G+ Y I P + + C +F +R+D Sbjct: 1 MYAYIKGHLSQLFPTHIVVETSSGIGYEIQTP-NSYRFQKYLNQECKVFTSLIVREDAQL 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF+S+ +++ F+ L V G+G + A+ +L+ T E+ +I +N + + PGI K Sbjct: 60 LYGFISEEEKEMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I+ +LKGK + ++ + + + + + A+ AL LGY + + + Sbjct: 120 TARQIVLDLKGKVK----ITEETSETLLQVEGQVEENDNIIKEALLALAALGYSKRELSK 175 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 V VL K +I + +++ L+ + Sbjct: 176 -VEKVLNK-TSIHSVDEAVKIGLKTL 199 >gi|262066188|ref|ZP_06025800.1| holliday junction DNA helicase RuvA [Fusobacterium periodonticum ATCC 33693] gi|294783453|ref|ZP_06748777.1| holliday junction DNA helicase RuvA [Fusobacterium sp. 1_1_41FAA] gi|291380095|gb|EFE87613.1| holliday junction DNA helicase RuvA [Fusobacterium periodonticum ATCC 33693] gi|294480331|gb|EFG28108.1| holliday junction DNA helicase RuvA [Fusobacterium sp. 1_1_41FAA] Length = 194 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 96/205 (46%), Gaps = 15/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G +E DY+ ID+ GV Y +Y P+R + +G+ ++ H+++D +L Sbjct: 1 MFEYLYGTVEYKKMDYIAIDINGVGYKVYFPLREYEKI-DLGNKYKFYIYNHIKEDAYKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GFL + DR+ + +L + G+G +A+ VLS + ++VE I + + ++P + K Sbjct: 60 IGFLDERDRKIYEMLLKINGIGPSLALAVLSNFSYDKIVEIISKNDYTSLKKVPKLGEKK 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A I+ +LK K +L+ + +S + + AL LGY + + Sbjct: 120 AQIIILDLKAKLKNLTYTEVETISI------------DMLEDLVLALEGLGYTKKEIDKT 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + V + + I+ L+ + Sbjct: 168 LEKV--DLSAYSSLEEAIKGILKNM 190 >gi|111221574|ref|YP_712368.1| Holliday junction DNA helicase RuvA [Frankia alni ACN14a] gi|111149106|emb|CAJ60789.1| Holliday junction DNA helicase RuvA [Frankia alni ACN14a] Length = 252 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 48/193 (24%), Positives = 82/193 (42%), Gaps = 8/193 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L +++V GV ++ C TL+ L +IG+ +L +R+ ++ L Sbjct: 1 MIASLAGTVRALGPLSAVVEVGGVGLLVQCTPATLARL-RIGEPASLATTLVVRETELTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF R F +LQS GVG ++A VL + ++ ++ + ++PGI K Sbjct: 60 YGFPDADARDVFEILQSAAGVGPKLAQAVLGVHEPDAVRRAVAEEDLAALTKVPGIGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDM-------SCVNKEQAHICSMPSFAINAISALVNLGYG 173 A RI+ +L+ + A + A AL+ LGY Sbjct: 120 AQRIVLDLRDRLGPPRGAAVPGPRSGGADLGAGGVGAAGPGEAGAVADTVREALIGLGYS 179 Query: 174 QDQATTAVVSVLK 186 +A AV L Sbjct: 180 AREADDAVSRALA 192 >gi|227524332|ref|ZP_03954381.1| Holliday junction DNA helicase RuvA [Lactobacillus hilgardii ATCC 8290] gi|227088563|gb|EEI23875.1| Holliday junction DNA helicase RuvA [Lactobacillus hilgardii ATCC 8290] Length = 198 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 91/205 (44%), Gaps = 9/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G I + Y+++ V G+ Y+IY ++V + I L Sbjct: 1 MYEFMDGQIVDITPAYIVLLVNGIGYLIY-TADPYRFNVDQNKTIRVYVYQSVSDSAILL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D++ F L +V G+G + A+ +L+ + LV +I ++ K + + PG+ K Sbjct: 60 YGFYEADDKKLFEKLIAVSGIGPKSALAILAGNDRSGLVLAISNKDVKFLTKFPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +L+GK LS +VQ +AISAL LGY Q A Sbjct: 120 AQQIILDLQGKVGDLSQIVQARSGQ------SASEQSDELRDAISALEALGYSAKQID-A 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + L K+K + + L L+ + Sbjct: 173 IRLELGKDK-ALTTDEYLSLGLKLL 196 >gi|310287480|ref|YP_003938738.1| Holliday junction DNA helicase ruvA [Bifidobacterium bifidum S17] gi|309251416|gb|ADO53164.1| Holliday junction DNA helicase ruvA [Bifidobacterium bifidum S17] Length = 206 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 53/210 (25%), Positives = 92/210 (43%), Gaps = 14/210 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + +I+V GV Y + G +F + QD + L Sbjct: 2 MISTLTGRVESVEASSAVIEVHGVGYEVRM-AAADLAALHAGQETHVFTSLTISQDAVTL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLS ++ F+ LQ V G+G +VA+ +LS + L +++ ++ +++ PG+ K Sbjct: 61 FGFLSPASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLAKAVADGDTAALSKAPGLGKKG 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ EL G+ + D S A I LV+LG+ A A Sbjct: 121 AQKIILELAGRIDLDQIRPEAD--------GPSESRDPGARQVIEGLVSLGWRPQTAEEA 172 Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAI 205 V + D ++++LAL ++ Sbjct: 173 VRQACDAASIATPISAEDVPRVLKLALSSL 202 >gi|304440231|ref|ZP_07400121.1| crossover junction ATP-dependent DNA helicase RuvA [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371280|gb|EFM24896.1| crossover junction ATP-dependent DNA helicase RuvA [Peptoniphilus duerdenii ATCC BAA-1640] Length = 193 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 100/205 (48%), Gaps = 14/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG E+ V I V G+ +I R + ++ + TLF + +R+D I + Sbjct: 1 MIDIVKGIAILKEENSVTIMVGGIGLLINVSSRENKEI-RLNEEITLFTKMVVREDDISI 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF+S +R F LL V G+G +VAMG++ EL + I+ + K + + PG+ K Sbjct: 60 YGFISKRERSIFSLLTMVSGIGPKVAMGIMGMYGEEELRKYILSSDVKSLTKAPGVGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK + + + D+ S+P +AI ALV LG+ + A Sbjct: 120 AERIILELKDRIVKIFGDFIPDV---------KESVPLENDDAIEALVGLGFSAIEVKNA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 +++V I++AL+ I Sbjct: 171 LMNV----DPSLSVDDKIKIALKNI 191 >gi|118475489|ref|YP_891982.1| holliday junction DNA helicase RuvA [Campylobacter fetus subsp. fetus 82-40] gi|166230534|sp|A0RP49|RUVA_CAMFF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|118414715|gb|ABK83135.1| holliday junction DNA helicase RuvA [Campylobacter fetus subsp. fetus 82-40] Length = 184 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 97/207 (46%), Gaps = 24/207 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I+G I V I GV Y I + T + L K G+ LF+ +R+D Sbjct: 1 MIKAIEGIITKKEPTNVWIKTLSGVSYGISISLFTSASLQK-GEKVELFITQVIREDANL 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF+ + +++ F +L V G+GA AM V S + E +++ + V+ ++PGI K Sbjct: 60 LYGFIKESEQRIFEMLLKVNGIGASTAMAVCSSLGPDEFSIAVMNGDDAVLRRVPGIGPK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A ++ +L + I SMPS+ A AL +LG+ +D+ + Sbjct: 120 TARTLIAQLSD-----------------AKFGEINSMPSYQNEAFMALESLGFKRDRISK 162 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 + E + D + +I+ AL+ ++ Sbjct: 163 VLN-----ECSSNDTASLIKEALKKLA 184 >gi|148272996|ref|YP_001222557.1| Holliday junction DNA helicase RuvA [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|166230540|sp|A5CS07|RUVA_CLAM3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|147830926|emb|CAN01870.1| Holliday junction DNA helicase subunit [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 214 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 48/208 (23%), Positives = 91/208 (43%), Gaps = 14/208 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +L++V GV Y + R L + G T+ +R+D + L Sbjct: 1 MISSLRGTVLSVSGQTLLLEVHGVGYGVSVTPRHALEL-RNGSEATVLTSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F LL V GVG + A+ VL + + +++ ++ ++ GI K Sbjct: 60 FGFPGPDELRAFELLCGVTGVGPKSALAVLEHLDPEAMAQAVAAEDDAAFRRVSGIGPKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT-- 178 A I+ +L GK + S + A + ++AL+ LG+ + A Sbjct: 120 AKLIVLQLAGKLFVTQPRARSATSAASTVTA----------DVVTALIGLGWSERVARTA 169 Query: 179 -TAVVSVLKKEKNIADDSQIIRLALRAI 205 + + AD +++R+AL + Sbjct: 170 VDDAAAAAADQGLPADMPRLLRVALGML 197 >gi|167755866|ref|ZP_02427993.1| hypothetical protein CLORAM_01383 [Clostridium ramosum DSM 1402] gi|237734834|ref|ZP_04565315.1| holliday junction DNA helicase subunit RuvA [Mollicutes bacterium D7] gi|167704805|gb|EDS19384.1| hypothetical protein CLORAM_01383 [Clostridium ramosum DSM 1402] gi|229382162|gb|EEO32253.1| holliday junction DNA helicase subunit RuvA [Coprobacillus sp. D7] Length = 188 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 95/205 (46%), Gaps = 19/205 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G + + D+++++ G+ Y+IY G +F+ +++D + L Sbjct: 1 MYSYLIGTVVEMNIDHIVVENSGIGYLIYVNNPYEYT---RGKEIKIFLYQQVKEDALLL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +++ F+ L V+G+G + A+G+L+ T ++ +I N + +IPGI K Sbjct: 58 YGFKTSEEKEMFLKLILVKGIGCKTAIGILATGDVTSIISAIETGNVAYLKKIPGIGPKA 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +L+GK N A + A L+ LGY + + A Sbjct: 118 AQQIILDLQGKFK-------------NTPTATTLINNNDLDEAAEVLIALGYKKSEVDKA 164 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +L ++ D + ++ AL + Sbjct: 165 LAVLLNEK---LDTNGYVKRALSLL 186 >gi|237739486|ref|ZP_04569967.1| holliday junction DNA helicase ruvA [Fusobacterium sp. 2_1_31] gi|229423094|gb|EEO38141.1| holliday junction DNA helicase ruvA [Fusobacterium sp. 2_1_31] Length = 194 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 96/205 (46%), Gaps = 15/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G +E DY+ ID+ GV Y +Y P+R + +G+ ++ H+++D +L Sbjct: 1 MFEYLYGTVEYKKMDYIAIDINGVGYKVYFPLREYEKI-DLGNKYKFYIYNHIKEDTYKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GFL + DR+ + +L + G+G +A+ VLS + ++VE I + + ++P + K Sbjct: 60 IGFLDERDRKIYEMLLKINGIGPSLALAVLSNFSYDKIVEIISKNDYTSLKKVPKLGEKK 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A I+ +LK K +L+ + +S + + AL LGY + + Sbjct: 120 AQIIILDLKAKLKNLTYTEVETISI------------DMLEDLVLALEGLGYTKKEIDKT 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + V + + I+ L+ + Sbjct: 168 LEKV--DLSAYSSLEEAIKGILKNM 190 >gi|170781148|ref|YP_001709480.1| Holliday junction DNA helicase RuvA [Clavibacter michiganensis subsp. sepedonicus] gi|189045747|sp|B0REB9|RUVA_CLAMS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|169155716|emb|CAQ00837.1| holliday junction DNA helicase RuvA [Clavibacter michiganensis subsp. sepedonicus] Length = 214 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 49/208 (23%), Positives = 93/208 (44%), Gaps = 14/208 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + +L++V GV Y + R L + G T+ +R+D + L Sbjct: 1 MISSLRGTVLSVSGQTLLLEVHGVGYGVSVTPRHALEL-RHGSEATVLTSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F LL V GVG + A+ VL + + +++ ++ ++ GI K Sbjct: 60 FGFPGPDELRAFELLCGVTGVGPKSALAVLEHLDPEAMAQAVAAEDDAAFRRVSGIGPKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT- 179 A I+ +L GK + S + A + ++AL+ LG+ + A T Sbjct: 120 AKLIVLQLAGKLFVTQPRTRSASSAASTVTA----------DVVTALIGLGWSERVARTA 169 Query: 180 --AVVSVLKKEKNIADDSQIIRLALRAI 205 + ++ AD +++R+AL + Sbjct: 170 VDDAAAAAAEQGLPADMPRLLRVALGML 197 >gi|148239406|ref|YP_001224793.1| Holliday junction resolvasome DNA-binding subunit [Synechococcus sp. WH 7803] gi|166231452|sp|A5GKN1|RUVA_SYNPW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|147847945|emb|CAK23496.1| Holliday junction resolvasome DNA-binding subunit [Synechococcus sp. WH 7803] Length = 215 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 54/219 (24%), Positives = 89/219 (40%), Gaps = 20/219 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQG----------VCYIIYCPIRTLSCLGKIGDFCTLFVE 50 MIG ++G +E G V Y + R + G G CTL+V Sbjct: 1 MIGWLQGERIQSWEQ------GGRRGVVVACGGVGYEVQLTSRDQNGQG-TGSACTLWVH 53 Query: 51 THMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVI 110 R D LFGF +R F L V GVG ++A+ +L ELV +I+ + K + Sbjct: 54 QVQRDDGSTLFGFCDQQERDLFRTLIGVNGVGPQMALALLDCCRVHELVAAIVDGDLKRL 113 Query: 111 AQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF-AINAISALVN 169 Q G+ + A RI EL+ + + + + + +S V++ + + L Sbjct: 114 TQAQGVGKRTAERIAVELRDRLGNWAPLQEPSLSLVDRSDVKAIPLGEPCLRDLQITLET 173 Query: 170 LGYGQDQATTAVVSVLK--KEKNIADDSQIIRLALRAIS 206 LGY + A+ +V D +R +L+ +S Sbjct: 174 LGYEDLEIRRAMRAVASGPDVPAEDDGDAWLRASLKWLS 212 >gi|163783946|ref|ZP_02178915.1| Holliday junction resolvasome DNA-binding subunit [Hydrogenivirga sp. 128-5-R1-1] gi|159880781|gb|EDP74316.1| Holliday junction resolvasome DNA-binding subunit [Hydrogenivirga sp. 128-5-R1-1] Length = 180 Score = 124 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 48/206 (23%), Positives = 88/206 (42%), Gaps = 29/206 (14%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI IKG + + D+++I+ I P + ++ + + RL Sbjct: 1 MIDYIKGKVIEVLNDFIVIETGNFGIKIETPHKF------EKKDTKIYTYLTFKDESFRL 54 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF R+ F+ L S+ G+G + A +L + ++ +++ +PGI K Sbjct: 55 FGFKDRQTRELFIKLTSINGIGVKHAFSILKNFNYEDFTLAVENNRIDLLSSVPGIGKKT 114 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ ELKGK S +A+ ALV+LG+ +++ Sbjct: 115 ASRIILELKGKLS--------------------FSEEPIFNDAVEALVSLGFEKEKVIKI 154 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + +K ++I+L+L+ +S Sbjct: 155 VKELSQK---TNSLEELIKLSLQKLS 177 >gi|319937623|ref|ZP_08012027.1| Holliday junction DNA helicase subunit RuvA [Coprobacillus sp. 29_1] gi|319807265|gb|EFW03877.1| Holliday junction DNA helicase subunit RuvA [Coprobacillus sp. 29_1] Length = 188 Score = 124 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 98/205 (47%), Gaps = 20/205 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG I + D++++D QG+ Y+IY G ++V +++D I L Sbjct: 1 MYSYIKGIIVDMARDHIVVDNQGIGYLIYVSNPYQFT---KGKETLVYVYQQVKEDGILL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFLS ++ F+ L V+G+G + A+G+L+ ++++I +N + +IPGI K Sbjct: 58 FGFLSKEEKDLFLKLIMVKGIGCKTAIGILATGDVNAIIQAIESKNIVYLKKIPGIGPKA 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +L+GK N + + AI L+ LGY + + Sbjct: 118 AQQIILDLQGKF--------------NGVISEMILTSVEFDEAIEVLIALGYKRQEVDKV 163 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ ++ D + ++ AL + Sbjct: 164 MNTLSQEH---LDTNGYVKKALNLL 185 >gi|269837708|ref|YP_003319936.1| Holliday junction DNA helicase RuvA [Sphaerobacter thermophilus DSM 20745] gi|269786971|gb|ACZ39114.1| Holliday junction DNA helicase RuvA [Sphaerobacter thermophilus DSM 20745] Length = 193 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 99/206 (48%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G I Y VLID+ G+ + T+ LG++GD L+ +R+D I L Sbjct: 1 MISGVRGPIHAKYPGIVLIDLHGLIIRVLTSQTTVDDLGEVGDHAELYTHLRVREDDITL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + Q F LL SV GVG RVA+ +LS E+ I ++ ++++PGI K Sbjct: 61 YGFSTPEELQLFELLTSVTGVGPRVALNILSSARPEEVHRVIESEDIAALSRVPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ EL+GK + + ++ + E + LGY +A A Sbjct: 121 ASRIILELRGKLPAPAGAQAPALAAADAEAMEAL-------------MALGYTAPEARDA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + E + + AL+ ++ Sbjct: 168 LARIERHEGQ--TVEERVYAALQTLA 191 >gi|46201286|ref|ZP_00055335.2| COG0632: Holliday junction resolvasome, DNA-binding subunit [Magnetospirillum magnetotacticum MS-1] Length = 173 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 61/166 (36%), Positives = 96/166 (57%) Query: 40 KIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELV 99 ++G TLF+ET +R+D I LFGFL +R WF LL +VQGVGA+V + +LS +L+ Sbjct: 2 EVGSAATLFIETQVREDAISLFGFLDTGERDWFRLLTTVQGVGAKVGLAILSVAAPDQLL 61 Query: 100 ESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF 159 + I Q+ + + G+ K+A RI+TELK KA ++ + A + + Sbjct: 62 QIIAAQDKAGLTRANGVGPKLAVRILTELKDKAGKIALGGFNPTAGAVASSAPLPAASGR 121 Query: 160 AINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 +A+SALVNLGY + +A AV ++ + AD S +IR +L+ + Sbjct: 122 MEDAVSALVNLGYKRLEAFQAVGETARELGDDADSSALIRASLKRL 167 >gi|227495489|ref|ZP_03925805.1| possible crossover junction endodeoxyribonuclease [Actinomyces coleocanis DSM 15436] gi|226831036|gb|EEH63419.1| possible crossover junction endodeoxyribonuclease [Actinomyces coleocanis DSM 15436] Length = 195 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 51/205 (24%), Positives = 100/205 (48%), Gaps = 15/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +G ++ + ++++ G I + T + + + G+ L+ +R+D + L Sbjct: 1 MISFFQGEVQAIKPGHLVLVNGGFGLSIQVTVGTANQV-RHGELVGLYTSLIVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL++ +R F +LQ+V +G R A+ L +T EL +++I + K + +IPGI K Sbjct: 60 YGFLTEDERDTFNVLQTVSKIGPRTALQALEALTPDELRQAVISSDEKTLQRIPGIGKKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ E+ K + + V+ + I+ LV+LGY + A A Sbjct: 120 AQRMLIEIGDKLGTPTGNVKLGTTV-----------SVAETEVIAGLVSLGYSEVSAQAA 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + + + S+++R AL + Sbjct: 169 VEPF---QGSDMNTSEMLRAALIQL 190 >gi|262283650|ref|ZP_06061415.1| Holliday junction DNA helicase motor protein [Streptococcus sp. 2_1_36FAA] gi|262260707|gb|EEY79408.1| Holliday junction DNA helicase motor protein [Streptococcus sp. 2_1_36FAA] Length = 197 Score = 124 bits (311), Expect = 9e-27, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 94/206 (45%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M KG I + Y++++V + YI++ + G + ++V +R+D L Sbjct: 1 MYEYFKGIISKITAKYIVLEVNSIGYILHV-ANPYAYSGHLHQEAKVYVHQVVREDAELL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ ++Q F+ L SV G+G A+ +++ LV++I +N + + P I K Sbjct: 60 YGFAAEEEKQLFLSLISVSGIGPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ +L+GK + + K+ + A+ A++ LGY + Sbjct: 120 AQQMVLDLEGKVVIAGDDLSA------KDAVQASNENQELEEAMEAMLALGYKAAE---- 169 Query: 181 VVSVLKKEKNIADD-SQIIRLALRAI 205 + + K + D I+ AL+ + Sbjct: 170 LKKIKKFFEGTTDTAENYIKSALKML 195 >gi|68171608|ref|ZP_00544978.1| RuvA, C-terminal [Ehrlichia chaffeensis str. Sapulpa] gi|88658340|ref|YP_507141.1| holliday junction DNA helicase RuvA [Ehrlichia chaffeensis str. Arkansas] gi|123763770|sp|Q2GHE2|RUVA_EHRCR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|67998975|gb|EAM85656.1| RuvA, C-terminal [Ehrlichia chaffeensis str. Sapulpa] gi|88599797|gb|ABD45266.1| holliday junction DNA helicase RuvA [Ehrlichia chaffeensis str. Arkansas] Length = 190 Score = 124 bits (310), Expect = 9e-27, Method: Composition-based stats. Identities = 54/207 (26%), Positives = 107/207 (51%), Gaps = 19/207 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ-IR 59 MIG + G IE +Y +Y++++V V YIIY + L K G+ L++ET++ +D + Sbjct: 1 MIGSLTGIIEEIYNNYIILNVGNVGYIIYVSHKVLQS-CKTGNNIKLYIETYVNRDNLTQ 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL ++ + +L ++ G+ + A+ +LS+++ ++ +++ N + GI K Sbjct: 60 LYGFLDKQEQDYMRMLVTINGINHKTAISILSKLSPEQIFSAVVSNNKNAF-RGNGIGEK 118 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 +A RI TEL+ K + + ++++AL++LGY + +A Sbjct: 119 LAGRITTELQYKISKMPIEETLIIK---------------EDDSLAALISLGYDKLKAFN 163 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ + + +IIR AL+ +S Sbjct: 164 AIQEIKANFPDD-SIQEIIRKALQKLS 189 >gi|116333841|ref|YP_795368.1| Holliday junction resolvasome, DNA-binding subunit [Lactobacillus brevis ATCC 367] gi|122269472|sp|Q03R35|RUVA_LACBA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|116099188|gb|ABJ64337.1| Holliday junction DNA helicase subunit RuvA [Lactobacillus brevis ATCC 367] Length = 202 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 41/205 (20%), Positives = 84/205 (40%), Gaps = 5/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G I +Y D+V++DV GV Y++ + T++V + L Sbjct: 1 MYEYLHGLITAVYPDHVVVDVNGVGYLVNTANPYRYEVSAT--AVTIYVYQAVSDTAQTL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++Q F+ L +V G+G + A+ +L+ L+ +I ++ + + PG+ K Sbjct: 59 YGFSDFAEKQLFLKLINVNGIGPKSALAILANPDHQGLMMAIKTNDTGFLTKFPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +L+ K L+ + + P A + GY + Sbjct: 119 AGQIVLDLQNKLDDLAPATDDNTLFTPEVAPTTTENPQLADALAALTAL-GYRETAVKKI 177 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++ N + + LR + Sbjct: 178 TAQL--RQFNGQTTNDYLSEGLRLL 200 >gi|242310193|ref|ZP_04809348.1| holliday junction ATP-dependent DNA helicase ruvA [Helicobacter pullorum MIT 98-5489] gi|239523490|gb|EEQ63356.1| holliday junction ATP-dependent DNA helicase ruvA [Helicobacter pullorum MIT 98-5489] Length = 192 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 95/206 (46%), Gaps = 18/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIR 59 MI ++G I + I GV Y ++ ++T + + + G+ TL +R+D Sbjct: 1 MIIALQGEIFFKEPTRIAIKCAGVIYEVFISLQTSNQITQTKGENLTLLTTHIIREDAQI 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGFL + +++ F L + GVG +VAM +LS T + + + K + ++PGI K Sbjct: 61 LFGFLENNEKKLFDTLIKINGVGPKVAMAILSTYTPQTFAKVVESNDIKSMQRVPGIGPK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL G ++ LS + S + AL +LGY D Sbjct: 121 SAGRILVELSGWSLELS------------QTNQTIKEDSTLHQVVLALESLGYKNDIIQK 168 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 A+ + K E Q+++ AL+ I Sbjct: 169 AIKGLEKDE-----VGQMVKAALKKI 189 >gi|224418856|ref|ZP_03656862.1| Holliday junction DNA helicase RuvA [Helicobacter canadensis MIT 98-5491] gi|253828156|ref|ZP_04871041.1| Holliday junction DNA helicase motor protein [Helicobacter canadensis MIT 98-5491] gi|313142373|ref|ZP_07804566.1| holliday junction ATP-dependent DNA helicase ruvA [Helicobacter canadensis MIT 98-5491] gi|253511562|gb|EES90221.1| Holliday junction DNA helicase motor protein [Helicobacter canadensis MIT 98-5491] gi|313131404|gb|EFR49021.1| holliday junction ATP-dependent DNA helicase ruvA [Helicobacter canadensis MIT 98-5491] Length = 191 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 95/206 (46%), Gaps = 19/206 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIR 59 MI ++G I + I+ GV Y ++ ++T + + + GD TL +R+D Sbjct: 1 MIIALEGKIFAKEPTKIAINCTGVVYEVFISLQTSNQITQNKGDSITLLTTHIIREDVQN 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGFL +++ F L + GVG +VAM +LS T + + + K + ++PGI K Sbjct: 61 LFGFLESSEKKLFDTLIKINGVGPKVAMAILSTYTPQTFAKVVEGNDIKSMQRVPGIGPK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL G ++ LS Q S I AL +LGY D Sbjct: 121 SAGRILVELSGWSLELS-------------QNETNHKDSDYNQVILALESLGYKNDIIQK 167 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 A+ + K E Q+++ AL+ I Sbjct: 168 AIKGLEKNE-----VGQMVKAALKKI 188 >gi|291533989|emb|CBL07102.1| Holliday junction DNA helicase subunit RuvA [Megamonas hypermegale ART12/1] Length = 161 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 44/143 (30%), Positives = 79/143 (55%), Gaps = 1/143 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + + D+ IDV GV Y ++ T + L K+ + LF +R+D + L Sbjct: 1 MIGYLQGKVTYIASDFCFIDVHGVGYRVFISTSTRAQL-KMNEEIKLFTYLSVREDAMLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ L+ F L SV +G + +G+LS +++ +L+ +I + ++ PGI K Sbjct: 60 YGFINQLEYDVFCKLISVSKIGPKAGLGLLSSLSSEKLIWAIQNKQVSLLTNAPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDM 143 A RI+ ELK K L+ + ++ Sbjct: 120 AERIVLELKDKLTELNLSISDEV 142 >gi|149194599|ref|ZP_01871695.1| Holliday junction DNA helicase motor protein [Caminibacter mediatlanticus TB-2] gi|149135343|gb|EDM23823.1| Holliday junction DNA helicase motor protein [Caminibacter mediatlanticus TB-2] Length = 180 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 88/206 (42%), Gaps = 30/206 (14%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG I + +DV+ + Y + + T + ++ +++++ L Sbjct: 1 MIAALKGKIFEKDNGKIFLDVRDIIYELNVSLNTFAN----AKDGIFYITEIIKENEYSL 56 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF++ +++ F L + GVG +VA+ + S T E + I Q+ + ++PGI K Sbjct: 57 YGFINKNEKKLFDNLIKLNGVGPKVALAICSTFTPDEFISIISSQDINSLKKVPGIGPKS 116 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ E+ I ++ A++AL NLG+ + A Sbjct: 117 AKRILMEMGDF--------------------EIENINPIISQAVTALENLGFKRADILKA 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + II+ AL+ +S Sbjct: 157 ISGL------DGSLEDIIKEALKRLS 176 >gi|57239403|ref|YP_180539.1| Holliday junction DNA helicase RuvA [Ehrlichia ruminantium str. Welgevonden] gi|58579373|ref|YP_197585.1| Holliday junction DNA helicase RUVA [Ehrlichia ruminantium str. Welgevonden] gi|81352832|sp|Q5HAK5|RUVA_EHRRW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|57161482|emb|CAH58408.1| putative Holliday junction DNA helicase RuvA [Ehrlichia ruminantium str. Welgevonden] gi|58417999|emb|CAI27203.1| Holliday junction DNA helicase RUVA [Ehrlichia ruminantium str. Welgevonden] Length = 191 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 55/207 (26%), Positives = 111/207 (53%), Gaps = 18/207 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ-IR 59 MIG I GN+E + + Y++++V + YIIY + L K+GD L++ET++ +D + Sbjct: 1 MIGSITGNVEEIRDSYIILNVGNIGYIIYVSHKVLQT-CKVGDNIKLYIETYVNRDNITQ 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL+ ++ + +L ++ G+ + A+ +LS+++ ++ +++ + + GI K Sbjct: 60 LYGFLNRQEQDYLKMLVTINGINYKTALSILSKLSPEQIFSAVVNNDKIAF-KGNGIGEK 118 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 +A RI+TEL+ K NK ++++AL++LGY + +A Sbjct: 119 LAGRIITELQYKI--------------NKMPIEETFSIIENDDSLAALISLGYEKLKAFN 164 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 + + K + A ++IR AL+ +S Sbjct: 165 VIQEIKSKTPD-ASTQEVIRKALQKLS 190 >gi|222099496|ref|YP_002534064.1| Holliday junction DNA helicase [Thermotoga neapolitana DSM 4359] gi|61657322|emb|CAI44241.1| holliday junction DNA helicase [Thermotoga neapolitana] gi|221571886|gb|ACM22698.1| Holliday junction DNA helicase [Thermotoga neapolitana DSM 4359] Length = 191 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 95/206 (46%), Gaps = 22/206 (10%) Query: 2 IGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 I I G + + V + G+ + I C +T L + C L+ + QD + L Sbjct: 5 IAGIYGKVVEKNGNTVFVSTNSGIVFEIACDTQTCEEL-EENRECYLYTFLSVSQDGVAL 63 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + F+ L V +G + A+ +LS L+ I Q+ + +++IPGIS K Sbjct: 64 YGFSDRKKKDLFLSLMKVSRLGPKTALKILSSEDVDTLISMINSQDVEGLSKIPGISRKT 123 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELKGK ++ + ++ ALV+LGY + QA A Sbjct: 124 AERIVMELKGKF-----------------ESTVLKDLKTYHESLEALVSLGYPEKQARKA 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + VLK + S++I+ ALR +S Sbjct: 167 IKEVLK---DGMSTSEVIKEALRILS 189 >gi|308187172|ref|YP_003931303.1| Holliday junction ATP-dependent DNA helicase ruvA [Pantoea vagans C9-1] gi|308057682|gb|ADO09854.1| Holliday junction ATP-dependent DNA helicase ruvA [Pantoea vagans C9-1] Length = 167 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 45/168 (26%), Positives = 82/168 (48%), Gaps = 4/168 (2%) Query: 38 LGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATE 97 + ++ +F +R+D LFGF S +R F L V GVG ++A+ +LS ++A + Sbjct: 1 MPELQHEAVIFTHFVVREDAQLLFGFNSKQERALFRELIKVNGVGPKLALAILSGMSAQQ 60 Query: 98 LVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVV-QQDMSCVNKEQAHICSM 156 V ++ + + ++PG+ K A R++ E+K + + + D + + Sbjct: 61 FVTAVEKEEIASLVKLPGVGKKTAERLVVEMKDRFKGMHGDLFGGDSAFTLTTPSAEPET 120 Query: 157 PSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204 A++ALV+LGY +A+ + V + AD +IR ALRA Sbjct: 121 NDAESEAVAALVSLGYKPQEASRMISKVGR---PDADCETLIREALRA 165 >gi|126642622|ref|YP_001085606.1| Holliday junction DNA helicase RuvA [Acinetobacter baumannii ATCC 17978] Length = 176 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 56/181 (30%), Positives = 88/181 (48%), Gaps = 8/181 (4%) Query: 25 CYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGAR 84 Y I P+ T L K G TL+ +R+D +L+GF ++ F L V GVG + Sbjct: 2 GYEIDTPLSTFCQLQK-GQKVTLWTHLVVREDAQQLYGFSDAQEKTIFRTLLKVNGVGPK 60 Query: 85 VAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMS 144 +A+G+LS ++ LV +I + + ++PG+ K A R+M EL+ + +L+ Q S Sbjct: 61 MALGILSTLSVELLVHTIEHDDVNTLVKVPGVGKKTAERLMIELRDRFKTLA----QGTS 116 Query: 145 CVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204 S A +AL +LGY +A AV +V AD IIR AL++ Sbjct: 117 SAAALPQIQFVSNSPVAEAEAALQSLGYKPLEAQKAVAAVKADYTESAD---IIRAALKS 173 Query: 205 I 205 + Sbjct: 174 M 174 >gi|271967390|ref|YP_003341586.1| Holliday junction DNA helicase subunit RuvA [Streptosporangium roseum DSM 43021] gi|270510565|gb|ACZ88843.1| Holliday junction DNA helicase subunit RuvA [Streptosporangium roseum DSM 43021] Length = 206 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 61/212 (28%), Positives = 105/212 (49%), Gaps = 14/212 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D +++V GV +++C TL+ L ++G+ L +R++ + L Sbjct: 1 MIASVRGRVAAIAPDGAVVEVGGVGMLVHCTPGTLATL-RVGEEARLATSLVVREESLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF SD +R F +LQ+ GVG +VA+ +L+ T L ++ + K + ++PG+ K Sbjct: 60 FGFGSDDERGVFEMLQTANGVGPKVALAMLAVHTPNALRMAVASADVKALTRVPGVGPKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +LK K VN + P++ S LV LGY A A Sbjct: 120 AQRIIVDLKDKL-------GTPDQAVNAALNGGAAAPAWRDQVHSGLVGLGYSARDADEA 172 Query: 181 VVSVLKK------EKNIADDSQIIRLALRAIS 206 V +V + E + +++ ALRA+S Sbjct: 173 VAAVTPQADIEVAEGRSPQVATLLKAALRALS 204 >gi|154174555|ref|YP_001408214.1| Holliday junction DNA helicase RuvA [Campylobacter curvus 525.92] gi|166230533|sp|A7GYC2|RUVA_CAMC5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|112802462|gb|EAT99806.1| holliday junction DNA helicase RuvA [Campylobacter curvus 525.92] Length = 184 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 47/207 (22%), Positives = 91/207 (43%), Gaps = 24/207 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I+G I +V++ GV Y ++ + + L K G+ L +R+D Sbjct: 1 MIRAIEGIITKKEPAFVVLKTAGGVSYGLFISLFCSAKLSK-GEKVELNTTQIIREDANL 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL +++ F +L + G+GA AM + S ++ ++I ++ +PGI K Sbjct: 60 LYGFLDTNEQKMFEMLIKLNGIGASTAMAICSSLSPNAFSNAVINGDADTFKSVPGIGPK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL + S+P + A+ AL LG+ +++ Sbjct: 120 TARRIIAELSD-----------------AKLISDESVPGYQNEALLALEALGFKREKIVK 162 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 + + S++++ AL+ ++ Sbjct: 163 ILPDL-----KSTSTSELVKEALKKLA 184 >gi|282855630|ref|ZP_06264944.1| holliday junction ATP-dependent DNA helicase RuvA [Pyramidobacter piscolens W5455] gi|282586560|gb|EFB91814.1| holliday junction ATP-dependent DNA helicase RuvA [Pyramidobacter piscolens W5455] Length = 203 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 88/205 (42%), Gaps = 6/205 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ I+G + E +++ G + R ++G L+ + I L Sbjct: 1 MLASIRGKVVERSEFTAVVECNGFGVEVLLTRRAAER-CELGTQVFLYTLLQVGDAGIVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +R+ F L+ +GVG + A+ +L ++ E+V ++ + +++ +PGI K Sbjct: 60 YGFADDTERRTFKLMILTKGVGGKAAISILQYLSPAEIVAAVEQNDIRLLTSVPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI EL + + + A + + AL +LG+ + A A Sbjct: 120 AERICFELSDRIHKKGFIQ-----LTGEFHGAPAGDRQAAASVLDALESLGFDRASAVRA 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 SV+ ++ +S+ I LR + Sbjct: 175 YKSVVAEQGEALGESETIMSCLRIL 199 >gi|28378879|ref|NP_785771.1| holliday junction DNA helicase RuvA [Lactobacillus plantarum WCFS1] gi|254557084|ref|YP_003063501.1| holliday junction DNA helicase RuvA [Lactobacillus plantarum JDM1] gi|308181078|ref|YP_003925206.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus plantarum subsp. plantarum ST-III] gi|38258511|sp|Q88V02|RUVA_LACPL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|28271716|emb|CAD64622.1| holliday junction DNA helicase RuvA [Lactobacillus plantarum WCFS1] gi|254046011|gb|ACT62804.1| holliday junction DNA helicase RuvA [Lactobacillus plantarum JDM1] gi|308046569|gb|ADN99112.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus plantarum subsp. plantarum ST-III] Length = 203 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 90/206 (43%), Gaps = 7/206 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M G + + YV+I+V G+ Y + +G +++ + ++ + L Sbjct: 1 MYEYFLGQVTDVTPGYVVIEVSGIGYKVLTANPYRYQVGPT--AVKMYIHQAVSENGMSL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ F L V G+G + A+ +L+ L+++I +N+ + PG+ K Sbjct: 59 FGFFDADEKALFEKLLGVSGIGPKSALAILANNDHAGLIQAINQENATYLTSFPGVGKKT 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKGK L+ D++ ++ +A++AL LGY + Sbjct: 119 AQQIVLDLKGKLNDLN----VDVTGQTALDVDAPAVDGALADALAALEALGYSKADVKKV 174 Query: 181 VVSVLK-KEKNIADDSQIIRLALRAI 205 + + AD + ++ LR + Sbjct: 175 TKKLETFSQTQGADTNTLLSEGLRLL 200 >gi|225352127|ref|ZP_03743150.1| hypothetical protein BIFPSEUDO_03742 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157374|gb|EEG70713.1| hypothetical protein BIFPSEUDO_03742 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 205 Score = 120 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 55/211 (26%), Positives = 101/211 (47%), Gaps = 16/211 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G ++ + +I+V GV Y P L+ + G ++ ++ QD I L Sbjct: 1 MIGMLHGQVDFIDAASAIIEVGGVGYETRMPSADLASMHA-GQTVKVYTSLNVSQDAITL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++ F+ LQ V G+G +VA+ +LS + L +++ ++ +A+ PG+ K Sbjct: 60 YGFSSLASKRMFLQLQKVSGIGPKVALSLLSTLPPERLAKAVADGDATALAKAPGLGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAIN-AISALVNLGYGQDQATT 179 A +I+ ELKG D+S + + S + L++LG+ Q A Sbjct: 120 AQKIILELKGSI---------DLSQIEGASKEVRSAEDAGSEQVVEGLMSLGWRQQDALH 170 Query: 180 AVVSVLKKEK-----NIADDSQIIRLALRAI 205 AV +V + D ++++LAL ++ Sbjct: 171 AVQTVCESNHINVPLRDDDVPRVLKLALASL 201 >gi|158522217|ref|YP_001530087.1| DNA recombination protein RuvA [Desulfococcus oleovorans Hxd3] gi|254766957|sp|A8ZUH8|RUVA_DESOH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|158511043|gb|ABW68010.1| DNA recombination protein RuvA domain I [Desulfococcus oleovorans Hxd3] Length = 205 Score = 120 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 47/202 (23%), Positives = 91/202 (45%), Gaps = 13/202 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG--KIGDFCTLFVETHMRQDQI 58 MIG ++G + ED +L+ V Y + P ++ L + GD + + + Q Sbjct: 1 MIGYLEGTLLKKKEDRILLLAGPVGYEVLLPAVVMASLQGKREGDPLFFHIYHYQTERQP 60 Query: 59 R--LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 + L GF ++ ++ +F LL +V+ +G A+ L+ E+ E+I NS ++ Q+ G+ Sbjct: 61 KPVLIGFNTEEEKDFFHLLITVEAIGPLKAVQCLTL-PIGEVAEAIETGNSALLGQLKGV 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALV-NLGYGQD 175 + A +++ LKGK + + + S A + LV LGY + Sbjct: 120 GGRTAQKMIATLKGKVGRFAD-------AGHSSAPDVPVTGSLADQTVEVLVGQLGYKPN 172 Query: 176 QATTAVVSVLKKEKNIADDSQI 197 +A V LK+ +++ + Sbjct: 173 EARLMVAGALKRNPDVSTPEAL 194 >gi|289523150|ref|ZP_06440004.1| holliday junction DNA helicase RuvA [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503693|gb|EFD24857.1| holliday junction DNA helicase RuvA [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 196 Score = 120 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 99/207 (47%), Gaps = 13/207 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + E+ V++DV G I C LS L K TL + + L Sbjct: 1 MIKFVSGAVVSVEENIVVLDVSGFGMEIICSREALS-LCKPSKKVTLPTYLAVSESGPSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +R++F++L++V+G+GAR A+ +L ++A EL+E I +N + + ++PG+ K Sbjct: 60 YGFGDDFEREFFLMLKNVKGMGARTAISILRWLSARELIEIIAEKNLEKLEKVPGVGRKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI ELK K L + + AL L + + + A Sbjct: 120 AERICFELKDKTKKLF-----------TGKKGTYERSDKLMLVRLALKELNFSEGEIDRA 168 Query: 181 VVSVLKKEK-NIADDSQIIRLALRAIS 206 + S+ K + + +++ AL+ +S Sbjct: 169 IGSLQTNAKIDEESEEVLLQKALKVLS 195 >gi|157736995|ref|YP_001489678.1| Holliday junction DNA helicase RuvA [Arcobacter butzleri RM4018] gi|167012656|sp|A8EST5|RUVA_ARCB4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|157698849|gb|ABV67009.1| holliday junction DNA helicase RuvA [Arcobacter butzleri RM4018] Length = 185 Score = 120 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 93/205 (45%), Gaps = 22/205 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G I + ++V GV Y ++ + S + + D L + +R+D L Sbjct: 1 MIVGLIGKIIKKEPTQLNVNVNGVIYEVFVSLNCSSKI--VSDDVKLEITHIIREDAQSL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL +++ F + + GVG +VA+ + S T T + + + ++ ++PGI K Sbjct: 59 YGFLDSNEKKLFDTVIKINGVGPKVALAICSTFTPTSFAQIVSSNDVSMLKRVPGIGPKG 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ EL G I S S A+ A AL +LG+ +D ++ Sbjct: 119 ASRILVELSGFIID---------------SNDETSGSSSALEAALALESLGFKKDLVSSV 163 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + S +++ AL+ + Sbjct: 164 LKTCVNSN-----TSDLVKEALKKL 183 >gi|320449357|ref|YP_004201453.1| holliday junction DNA helicase RuvA [Thermus scotoductus SA-01] gi|320149526|gb|ADW20904.1| holliday junction DNA helicase RuvA [Thermus scotoductus SA-01] Length = 191 Score = 120 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 94/205 (45%), Gaps = 15/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + E L+ V GV +++ P L L K G + +R++ + L Sbjct: 1 MIRYLRGTVLKREEGGFLLLVNGVGFLVQAPQTFLQSL-KEGQEVAVHTHLQLREEGLFL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + F LL SV GVG +VA+ +LS +T L +++ + +++ G+ ++ Sbjct: 60 YGFPDEESLLLFELLLSVSGVGPKVALSLLSALTPRLLAQALAQGDLRLLTAASGVGRRL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI ELKGK A AI AL LG+ + QA Sbjct: 120 AERIALELKGKVPP-------------SLLTGQKVESQAAEEAILALTALGFKEGQARGV 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+ +L K + A ++I+ AL+ + Sbjct: 167 VLDLLAKRPS-ASAQELIKEALKRL 190 >gi|288574886|ref|ZP_06393243.1| Holliday junction DNA helicase RuvA [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570627|gb|EFC92184.1| Holliday junction DNA helicase RuvA [Dethiosulfovibrio peptidovorans DSM 11002] Length = 202 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 50/208 (24%), Positives = 91/208 (43%), Gaps = 11/208 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ + G + + ++DV G+ + + R S L +G +L L Sbjct: 1 MLAMVTGTVLDVTTQMAVVDVSGLGFEMQLT-RKASSLCSVGKEVSLHCHVQFSDAGPTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF L++ F+ L SV+G+G ++A+ VL +TA +V+++ + + +PGI K Sbjct: 60 FGFADGLEKAVFLRLLSVRGIGGKLALQVLQGMTAEAVVQAVSFGDPSGLTGVPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI EL+ K D + AL +LG+ + ++ A Sbjct: 120 AERICFELQEKMSEGLPKGSTDNLREMVVPDSET--------VMEALESLGFQRQSSSEA 171 Query: 181 VVSVLKKEK--NIADDSQIIRLALRAIS 206 + ++ KK + +I LALR ++ Sbjct: 172 LAAIAKKRGSVDGLGVEDLIMLALRELN 199 >gi|315636187|ref|ZP_07891441.1| crossover junction ATP-dependent DNA helicase RuvA [Arcobacter butzleri JV22] gi|315479548|gb|EFU70227.1| crossover junction ATP-dependent DNA helicase RuvA [Arcobacter butzleri JV22] Length = 185 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 93/205 (45%), Gaps = 22/205 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G I + ++V GV Y ++ + S + + D L + +R+D L Sbjct: 1 MIVGLIGKIIKKEPTQLNVNVNGVIYEVFVSLNCSSKI--VSDDVKLEITHIIREDAQSL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL +++ F + + GVG +VA+ + S T T + + + ++ ++PGI K Sbjct: 59 YGFLDSNEKKLFDTVIKINGVGPKVALAICSTFTPTSFAQIVSSNDVSMLKRVPGIGPKG 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ EL G I S S A+ A AL +LG+ +D ++ Sbjct: 119 ASRILVELSGFIID---------------SNDETSGSSSALEAALALESLGFKKDLVSSV 163 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + S +++ AL+ + Sbjct: 164 LKTCVSSN-----TSDLVKEALKKL 183 >gi|257452123|ref|ZP_05617422.1| Holliday junction DNA helicase ruvA [Fusobacterium sp. 3_1_5R] gi|317058668|ref|ZP_07923153.1| holliday junction DNA helicase ruvA [Fusobacterium sp. 3_1_5R] gi|313684344|gb|EFS21179.1| holliday junction DNA helicase ruvA [Fusobacterium sp. 3_1_5R] Length = 193 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 97/205 (47%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G + +Y ++V G+ Y +Y +R + ++G +++ H+R+++ +L Sbjct: 1 MFEYLEGIVAYKKPEYFALEVHGIAYRVYISLRMYEKI-EVGKSYRVYIYNHIREEEYKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GFL + +R+ F LL SV+G+G +A+ LS +LV I + + +IP + K Sbjct: 60 IGFLEEKERKLFELLLSVKGIGVSLALAALSTYPVEQLVAYIQEEKVGQLKKIPKLGEKK 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +++ K +++ S ++A + SAL NLGY + + Sbjct: 120 AQQIILDIQSKLKHFGV----------EQRFVEDSSMAWAEDIASALENLGYAKKEVEHL 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + ++ L+ + Sbjct: 170 LQH--ENWTEYQSLEEAMKAILKKM 192 >gi|190571380|ref|YP_001975738.1| Holliday junction DNA helicase RuvA [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018779|ref|ZP_03334587.1| Holliday junction DNA helicase RuvA [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|254767401|sp|B3CMH6|RUVA_WOLPP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|190357652|emb|CAQ55096.1| Holliday junction DNA helicase RuvA [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995730|gb|EEB56370.1| Holliday junction DNA helicase RuvA [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 190 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 114/207 (55%), Gaps = 19/207 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFV--ETHMRQDQI 58 MIG ++G ++ + D+++++V V YI+Y +TLS IG L + + R++ Sbjct: 1 MIGNLRGIVDEVCSDHIILNVNDVGYIVYLSAKTLSA-CSIGSRVKLLIDTYANSRENVT 59 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +L+GF+S ++Q LL V GV + AM +LS++T +L +II ++ + ++ G+ + Sbjct: 60 QLYGFISKEEQQCLRLLVKVSGVSYKTAMSILSKLTPEQLFLAIINEDKLAL-KVSGLGL 118 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K+ +RI+TEL GK L + + S + +A+SAL+NLGY + +A Sbjct: 119 KLINRIITELNGKVSKL--------------EINNNHFHSISEDALSALINLGYERTKAY 164 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 + + + N+ D IIR+AL+ I Sbjct: 165 DTIKKIEDESPNL-DTKDIIRMALKTI 190 >gi|254796929|ref|YP_003081766.1| holliday junction DNA helicase RuvA [Neorickettsia risticii str. Illinois] gi|254590177|gb|ACT69539.1| holliday junction DNA helicase RuvA [Neorickettsia risticii str. Illinois] Length = 193 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 51/205 (24%), Positives = 105/205 (51%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G + L ++ +++DV GV Y ++ R + L + G +L++E + ++ +L Sbjct: 1 MIGKLTGTVTDLCQESLILDVGGVGYNVFTTRRLIDSL-RTGQNLSLYIEHYFSENINKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ +L V+G+ ++A+ +L+ + EL+ +I ++ + +I GI K+ Sbjct: 60 YGFECKKSQEVARMLSKVKGINYKIALSLLNHLELGELILAIQNKDESRL-KIKGIGEKL 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 RI+TE + L + +S N A+SALV LG+ + Sbjct: 119 VKRIITETYEDFLKLDLQLPGTVSSTNIH---------IVSEAVSALVKLGFQHKPSHKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+ ++ + I + +++I LAL+ + Sbjct: 170 VMEIMTNQPAI-EIAELITLALKML 193 >gi|328947934|ref|YP_004365271.1| Holliday junction ATP-dependent DNA helicase ruvA [Treponema succinifaciens DSM 2489] gi|328448258|gb|AEB13974.1| Holliday junction ATP-dependent DNA helicase ruvA [Treponema succinifaciens DSM 2489] Length = 206 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 45/197 (22%), Positives = 91/197 (46%), Gaps = 10/197 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G + G + + I+ G+ + + P +L + +G +FV ++ + L Sbjct: 1 MFNSLTGVVTGKFPQKLFIETNGIEWDVTVPDTSLEKIPSVGIKGRVFVWMQHTENLMSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF ++ +R F L V G+G + A+ ++S I+ L E + + + ++PG+ K Sbjct: 61 FGFATENERALFFDLLKVDGIGPKGAVKIMSNISVAALAEILDSGDVDALKKVPGVGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ LKGK N++ + + + I ALV++GY + +A A Sbjct: 121 AGKIILSLKGKL----------SFVSNEKISSAVRKNNAYSDVIDALVSMGYDRAKAEDA 170 Query: 181 VVSVLKKEKNIADDSQI 197 V + + ++ S + Sbjct: 171 VSKISSELQSDEKFSLL 187 >gi|289641361|ref|ZP_06473526.1| Holliday junction DNA helicase RuvA [Frankia symbiont of Datisca glomerata] gi|289508823|gb|EFD29757.1| Holliday junction DNA helicase RuvA [Frankia symbiont of Datisca glomerata] Length = 264 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 43/183 (23%), Positives = 79/183 (43%), Gaps = 8/183 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + L D +++V GV ++ C TL+ L ++G L +R+ ++ L Sbjct: 1 MIASVAGTVAALSPDAAVVEVGGVGLLVQCAPATLAGL-RVGQQARLVTTLVVRETELTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F LQS GVG R+A VL + + ++ ++ + ++PGI K Sbjct: 60 YGFADADERDVFETLQSASGVGPRLAQAVLGVHSPDSVRRAVAAEDLAALTKVPGIGRKG 119 Query: 121 ASRIMTELKGKAISLSSVV-------QQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 A RI+ +L+ + + + + + AL+ LGY Sbjct: 120 AQRIVLDLRDRLGPPVPAPAAGDDGVGVGGAGGDGAAPAAGTGVTAGEQVRLALLGLGYT 179 Query: 174 QDQ 176 + Sbjct: 180 ARE 182 >gi|33865569|ref|NP_897128.1| Holliday junction DNA helicase RuvA [Synechococcus sp. WH 8102] gi|44888398|sp|Q7U7F0|RUVA_SYNPX RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|33632738|emb|CAE07550.1| putative holliday junction DNA helicase RuvA [Synechococcus sp. WH 8102] Length = 205 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 46/212 (21%), Positives = 89/212 (41%), Gaps = 17/212 (8%) Query: 1 MIGKIKGNIEGLYE----DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MIG +KG+++ + + VLI GV Y + R + ++ + D Sbjct: 1 MIGWLKGDVQHRDQKGSRNLVLIACGGVGYDVQLIERDWQAV-STDQRHEFWIHQVVSAD 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 ++LFGFL +R F L V GVG + + +L+ ELV +++ + K + + G+ Sbjct: 60 NLQLFGFLQLAERDLFRELIQVSGVGPQAGLALLNACAYKELVTALVHSDLKTLCRAKGV 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 + A R+ EL+ + V + A + I+ L LG+ + Sbjct: 120 GKRTAERLALELRTRL----------TDSVASTGPERNQLDPVAPDLIATLETLGFETHE 169 Query: 177 ATTAVVSV--LKKEKNIADDSQIIRLALRAIS 206 A+ + + ++ DD +R ++ +S Sbjct: 170 IRDALQRLNGMGGPQDGDDDDAWLRACIKLMS 201 >gi|315187235|gb|EFU20992.1| Holliday junction DNA helicase RuvA [Spirochaeta thermophila DSM 6578] Length = 197 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 52/210 (24%), Positives = 96/210 (45%), Gaps = 18/210 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ ++G G+ + VLI+ G+ + I P LS L + GD L+V + R+D + L Sbjct: 1 MLYSVRGVYRGVDGEKVLIETGGLTWEIDVPSSILSQLPEPGDSLLLYVYLYHREDVLSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF S +R+ F+ L VQGVG R A+ ++S + E I ++ +A+ PGI K Sbjct: 61 IGFASREERRLFLDLLKVQGVGPRQALRIISSVPVPIFREIIQNEDLARLAKTPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ LKG + + + AL +G+ + +A + Sbjct: 121 AQKLLLTLKGSYVKQGPGGTEKAGP--------------HRELVEALAEMGFDRSRAESV 166 Query: 181 VVSVLKKEKNIADDS----QIIRLALRAIS 206 + ++++ +I+R A+ +S Sbjct: 167 LPDIIQEVSGGESVEGKEQEILRRAIIRLS 196 >gi|168333338|ref|ZP_02691622.1| Holliday junction DNA helicase RuvA [Epulopiscium sp. 'N.t. morphotype B'] Length = 183 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 102/206 (49%), Gaps = 25/206 (12%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIG-DFCTLFVETHMRQDQIR 59 MIG + G + +E+ +L++V G+ Y I+ GKI +++ ++++D Sbjct: 1 MIGYLVGTVAERFENIILLEVNGIGYEIFM-------XGKIDVAEVKIYIYENIKEDAYD 53 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF+S +++ F L SV G+G + A ++ LVE I+ +++ I ++PGI K Sbjct: 54 LYGFVSLAEKELFKKLISVNGIGPKAAAALIVLHGIN-LVECIVNEDASEITRVPGIGAK 112 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 IASR++ ELK K + ++ + A +ALV LGY + QA Sbjct: 113 IASRLILELKDKLSAFKTL-------------EKRVVVDGLEEATAALVALGYNKKQAAR 159 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 AV +V +I D I+ AL + Sbjct: 160 AVNAVYNYSDSIEDT---IKKALAVL 182 >gi|297624718|ref|YP_003706152.1| Holliday junction DNA helicase RuvA [Truepera radiovictrix DSM 17093] gi|297165898|gb|ADI15609.1| Holliday junction DNA helicase RuvA [Truepera radiovictrix DSM 17093] Length = 208 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 47/204 (23%), Positives = 89/204 (43%), Gaps = 9/204 (4%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 I + G + + +++ ++ P TL + ++G L ++++ + L+ Sbjct: 13 IAYLDGVVAEIRAGSLIVQAGAFGLEVFAPKPTL-MVCRVGSAVRLHTYFLVKEELLALY 71 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF F L V GVG ++A+ +LS + L +I+ ++ ++A PG+ K+A Sbjct: 72 GFHDRDLHTLFTHLIGVSGVGPKLALALLSSMQTPLLAGAILQGDAGLLASTPGVGKKMA 131 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 RI+ +LK K +++ A +A+ AL+ LGY + Q V Sbjct: 132 ERIILDLKNKL-------PEELLAPGARGKVTTLSSPAAEDAVGALLALGYRETQVKGVV 184 Query: 182 VSVLKKEKNIADDSQIIRLALRAI 205 + KE A +IR AL + Sbjct: 185 AQLALKEPE-AGAETLIRKALAQL 207 >gi|88607371|ref|YP_504791.1| Holliday junction DNA helicase RuvA [Anaplasma phagocytophilum HZ] gi|123722839|sp|Q2GLG0|RUVA_ANAPZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|88598434|gb|ABD43904.1| Holliday junction DNA helicase RuvA [Anaplasma phagocytophilum HZ] Length = 191 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 101/207 (48%), Gaps = 18/207 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ-IR 59 MIG + G IE + + +++ V GV YI++ RTL K GD L++ET++ +D + Sbjct: 1 MIGTLSGIIEEVQDTSIILAVGGVGYIVHVSYRTLIN-CKRGDSIKLYIETYVNRDNVPQ 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF ++ +L V G+ R A+ +L R+T +L +I+ ++ + G+ K Sbjct: 60 LYGFTDTEEQNCLKMLIKVSGINYRTALAILDRLTPDQLFSAIVNEDKAALKVG-GVGAK 118 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 + +RI TEL L + ++ +A+SAL++LGY + + Sbjct: 119 LINRIFTELTPLVQKLEFNIMDKRGPSVEDS-----------DALSALLSLGYEKTRVLN 167 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ V + S +R AL+ +S Sbjct: 168 ALEKV----GVSHNLSDTVRFALKELS 190 >gi|294786921|ref|ZP_06752175.1| holliday junction DNA helicase RuvA [Parascardovia denticolens F0305] gi|315226557|ref|ZP_07868345.1| crossover junction ATP-dependent DNA helicase RuvA [Parascardovia denticolens DSM 10105] gi|294485754|gb|EFG33388.1| holliday junction DNA helicase RuvA [Parascardovia denticolens F0305] gi|315120689|gb|EFT83821.1| crossover junction ATP-dependent DNA helicase RuvA [Parascardovia denticolens DSM 10105] Length = 207 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 62/210 (29%), Positives = 99/210 (47%), Gaps = 12/210 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G++ + D +L+DV G+ + + P R L+ L G L V T + QD I L Sbjct: 1 MIGSLEGDVLSVSADGLLLDVNGIGFSLRMPARDLAGLHAGGHERILTVMT-VSQDAIAL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFLS + F LQ V GVG + AM +LS ++ EL ++I + + + PG+ K Sbjct: 60 YGFLSASSKTLFTQLQKVSGVGPKAAMAILSTLSPEELGKAIHDNDVTALTRAPGVGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ EL G SV + + + S I L +LG+ + A A Sbjct: 120 AQKIILELHG------SVDFSSLDEAPASRVEEGGLDSSVDQVIQGLSSLGWQRRDAYQA 173 Query: 181 VVSVLKKEKNIADD-----SQIIRLALRAI 205 + L + A Q++R AL + Sbjct: 174 TMEALGQLSLTAPLTAGQIPQVLRKALSDL 203 >gi|218296106|ref|ZP_03496875.1| Holliday junction DNA helicase RuvA [Thermus aquaticus Y51MC23] gi|218243483|gb|EED10012.1| Holliday junction DNA helicase RuvA [Thermus aquaticus Y51MC23] Length = 191 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 94/205 (45%), Gaps = 15/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + E L+ V GV + + P L L + G+ + +R++ + L Sbjct: 1 MIRYLKGVVARKEEGSFLLLVGGVGFQVQAPSPFLQGL-REGEEVGVHTHLALREEGLFL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F LL SV GVG +VA+ +LS + L +++ + +++ G+ ++ Sbjct: 60 FGFPEEESLKLFELLLSVSGVGPKVALALLSALPPRLLAQALAEGDLRLLTSASGVGRRL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ ELKGK ++ S +E + G+ + QA + Sbjct: 120 AERLALELKGKVPKDLLTGEKVESREAEEAILALAAL-------------GFKEGQARSV 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+ +L K A ++I+ ALR + Sbjct: 167 VLDLLAKNP-GAKAQELIKEALRRL 190 >gi|307718817|ref|YP_003874349.1| holliday junction DNA helicase RuvA [Spirochaeta thermophila DSM 6192] gi|306532542|gb|ADN02076.1| holliday junction DNA helicase RuvA [Spirochaeta thermophila DSM 6192] Length = 197 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 52/210 (24%), Positives = 93/210 (44%), Gaps = 18/210 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ + G G+ + VLI+ G+ + I P LS L GD L V + R+D + L Sbjct: 1 MLYSLSGVYRGIEGEKVLIETGGLTWEIDVPSSLLSQLPDPGDSLLLHVYLYHREDVLSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF S +R+ F+ L VQG+G R A+ ++S + E I ++ +A+ PGI K Sbjct: 61 IGFASREERRLFLDLLKVQGIGPRQALRIISSVPVPLFREIIQKEDLARLAKTPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ LKG + + + ALV +G+ + +A Sbjct: 121 AQKLLLTLKGSYVR--------------QGTGDTEEAGPHRELVEALVEMGFDRARAERV 166 Query: 181 VVSVLKKEKNIADDS----QIIRLALRAIS 206 + ++++ +I+R A+ +S Sbjct: 167 LPDIIREVSEGEGVEGKEQEILRRAIIRLS 196 >gi|88608038|ref|YP_506455.1| holliday junction DNA helicase RuvA [Neorickettsia sennetsu str. Miyayama] gi|123763710|sp|Q2GDJ1|RUVA_NEOSM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|88600207|gb|ABD45675.1| holliday junction DNA helicase RuvA [Neorickettsia sennetsu str. Miyayama] Length = 193 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 106/205 (51%), Gaps = 12/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIGK+ G + L ++ +++DV GV Y ++ R + L + G +L++E + ++ +L Sbjct: 1 MIGKLTGTVTDLCQESLILDVGGVGYNVFTTRRLIDSL-RTGQNLSLYIEHYFLENINKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ +L V+G+ ++A+ +L+ + EL+ +I ++ + +I GI K+ Sbjct: 60 YGFECRKSQEVARMLSKVKGINYKIALSLLNHLELGELILAIQNKDESRL-KIKGIGEKL 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 RI+TE + L S + S N A A+SALV LG+ + Sbjct: 119 VKRIITETYEDFLKLDSHLSGIASSTNVH---------IASEAVSALVKLGFQHKPSHKV 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V+ ++ K I + +++I LAL+ + Sbjct: 170 VMEIMTKRPAI-EIAELITLALKML 193 >gi|257466083|ref|ZP_05630394.1| Holliday junction DNA helicase ruvA [Fusobacterium gonidiaformans ATCC 25563] gi|315917239|ref|ZP_07913479.1| holliday junction DNA helicase ruvA [Fusobacterium gonidiaformans ATCC 25563] gi|313691114|gb|EFS27949.1| holliday junction DNA helicase ruvA [Fusobacterium gonidiaformans ATCC 25563] Length = 193 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 97/205 (47%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G + +Y ++V G+ Y +Y +R + ++G +++ H+R+++ +L Sbjct: 1 MFEYLEGIVAYKKPEYFALEVHGIAYRVYISLRMYEKI-EVGKSYRVYIYNHIREEEYKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GFL + +R+ F LL SV+G+G +A+ LS +LV I + + +IP + K Sbjct: 60 IGFLEEKERKLFELLLSVKGIGVSLALAALSTYPVEQLVAYIQEEKVGQLKKIPKLGEKK 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +++ K +++ S ++A + SAL NLGY + + Sbjct: 120 AQQIILDIQSKLKHFGV----------EQRLVEDSSMAWAEDIASALENLGYAKKEVEHL 169 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + ++ L+ + Sbjct: 170 LQH--ENWIEYQSLEEAMKAILKKM 192 >gi|300870312|ref|YP_003785183.1| Holliday junction DNA helicase RuvA [Brachyspira pilosicoli 95/1000] gi|300688011|gb|ADK30682.1| holliday junction DNA helicase, RuvA [Brachyspira pilosicoli 95/1000] Length = 194 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 47/207 (22%), Positives = 96/207 (46%), Gaps = 16/207 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 M I+G + + E + + GV Y I + D L+ + ++D + Sbjct: 1 MFAFIEGKVCTISEGIIALLCSNGVAYEIIVSKK---LNVNNDDNIRLYTQLIHKEDSMT 57 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + +++ F L S GVGA++AM VLS + E++ + ++ ++ ++ G+ +K Sbjct: 58 LYGFKTREEKKMFNTLMSASGVGAKLAMEVLSTYSIDEIMHILFNKDINMLKKVQGMGVK 117 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +++ E++ K + + S + I AL++LG+ ++A Sbjct: 118 KAEKLLFEIRDKIEKIDINISS----------SKISYNENESDVIKALISLGFSNNEAVK 167 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ ++ + K +I LALR +S Sbjct: 168 ALSNI--ENKENKTTEDLISLALRNLS 192 >gi|170017578|ref|YP_001728497.1| Holliday junction DNA helicase RuvA [Leuconostoc citreum KM20] gi|229560098|sp|B1MZV1|RUVA_LEUCK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|169804435|gb|ACA83053.1| Holliday junction DNA helicase RuvA [Leuconostoc citreum KM20] Length = 196 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 51/206 (24%), Positives = 95/206 (46%), Gaps = 13/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 M I G I +Y Y++I D GV Y ++ + ++VE +R++++ Sbjct: 1 MYEYINGLITNIYPAYLVIADRSGVGYKLFV-ANPYRF--EQNVESHVYVEQIVRENEMT 57 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF+ + ++ F L +V G+G + A+ +L+ A LV ++ ++ + Q PG+ K Sbjct: 58 LYGFIDENEKYLFNKLLNVSGIGPKSALAILASDDAAGLVTAVANDDASYLTQFPGVGKK 117 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I+ +LKGK L+ + V + A+ +LGY Sbjct: 118 TAQQIVLDLKGKLDDLALSAGMTVETVPTTDNQALADALAALE------SLGYSAKDVAK 171 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + +VL +K+ D IR AL+ + Sbjct: 172 -LQTVLANQKDTTDG--YIRSALKFL 194 >gi|157164589|ref|YP_001466908.1| holliday junction DNA helicase RuvA [Campylobacter concisus 13826] gi|166230532|sp|A7ZDQ0|RUVA_CAMC1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|112800289|gb|EAT97633.1| holliday junction DNA helicase RuvA [Campylobacter concisus 13826] Length = 184 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 50/206 (24%), Positives = 92/206 (44%), Gaps = 24/206 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I+G + + ++ GV Y I+ + + L K G+ L + +R+D Sbjct: 1 MIKAIEGVVTKKEPAFAVLKTNSGVSYGIFISLFCSAKLSK-GEKVELAITQIIREDANL 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL +++ F +L + G+GA AM V S +++ +II ++ +PGI K Sbjct: 60 LYGFLDANEQKMFEMLIKLNGIGASTAMAVCSSLSSQAFTNAIISGDADTFKSVPGIGPK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL + S+PS+ A+ AL LG+ +++ Sbjct: 120 TARRIIAELSD-----------------TKLISDESVPSYQNEALLALEALGFKREKIVK 162 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + + + S +I+ AL+ + Sbjct: 163 IL-----PDCKSENTSDLIKEALKKL 183 >gi|152992417|ref|YP_001358138.1| Holliday junction DNA helicase RuvA [Sulfurovum sp. NBC37-1] gi|166231450|sp|A6Q8H2|RUVA_SULNB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|151424278|dbj|BAF71781.1| holliday junction DNA helicase RuvA [Sulfurovum sp. NBC37-1] Length = 185 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 88/205 (42%), Gaps = 23/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G +E ++ ++V G+ Y I I T + + + LF+ +R+D L Sbjct: 1 MIVGMEGIVERRDPTFIHLNVNGIIYEIQVSINTSNAIQE--KRVKLFITQVIREDADLL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF+ +++ F + + GVG +V + + S T + + ++ ++ ++PGI K Sbjct: 59 FGFMDTNEKKMFDTVLKINGVGPKVGLAICSTFTPETFAKVVASKDVSMLKRVPGIGPKA 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ EL + A+ AL +LG+ +D A Sbjct: 119 ASRILVELADFIVD---------------GNAAEGSSGALGEAVMALESLGFKKDAIQKA 163 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + D S +++ L+ + Sbjct: 164 LS------GCSGDTSTLVKEGLKKL 182 >gi|254525561|ref|ZP_05137613.1| holliday junction ATP-dependent DNA helicase RuvA [Prochlorococcus marinus str. MIT 9202] gi|221536985|gb|EEE39438.1| holliday junction ATP-dependent DNA helicase RuvA [Prochlorococcus marinus str. MIT 9202] Length = 225 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 50/218 (22%), Positives = 104/218 (47%), Gaps = 15/218 (6%) Query: 1 MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLGK---IGDFCTLFVETHM 53 MI I G + +++ +VLI+ QG+ Y I L TL+++ Sbjct: 1 MISWINGELVEIWQTNQKFFVLINCQGLGYEIQILESFFLKLKTNQISNKNITLWIKYIK 60 Query: 54 RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113 ++D LFGF S + +F+ + SV+G+G+++ M +L++ + +E++++I Q+ K+I + Sbjct: 61 KEDSDLLFGFASKDQKFFFIEILSVRGIGSQIGMSILNKFSISEIIKAIKTQDKKLICSV 120 Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 PGI K++ R++ ELK K S V ++ + + + + L +L Y Sbjct: 121 PGIGQKMSDRLILELKSKFK--SKVQIEEEKGQEEFEITNPEINKLMDDLQLTLQSLNYK 178 Query: 174 QDQATTAVVSVLKKEK------NIADDSQIIRLALRAI 205 + T + ++K+ +++LA+ + Sbjct: 179 NKEIKTILPFLIKELGLHTKKEKNLSFENLLKLAMNHL 216 >gi|309805314|ref|ZP_07699365.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LactinV 09V1-c] gi|308165390|gb|EFO67622.1| Holliday junction DNA helicase RuvA [Lactobacillus iners LactinV 09V1-c] Length = 167 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 49/179 (27%), Positives = 89/179 (49%), Gaps = 12/179 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G + + Y+++DV GV Y +Y P + +FVE +R++ I L Sbjct: 1 MFEYLQGKVTIINPAYIVLDVVGVGYKLYTP-NPYQFI--ENKQYCIFVEQVVRENAITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF ++ D+Q F+ L SV G+G + A+ +++ + L+ +I K + + PG+ K+ Sbjct: 58 YGFATNEDKQLFLKLISVSGIGPKSALAIMAAENSQSLMAAIEQGEIKYLTKFPGVGKKV 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 AS+I+ +LKGK D+S + + + +AI AL LGY + Sbjct: 118 ASQIILDLKGKL---------DVSDQPQLELILDQDNPALKDAILALSALGYSNKEVEK 167 >gi|309800933|ref|ZP_07695065.1| Holliday junction DNA helicase RuvA [Bifidobacterium dentium JCVIHMP022] gi|308222469|gb|EFO78749.1| Holliday junction DNA helicase RuvA [Bifidobacterium dentium JCVIHMP022] Length = 185 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 52/184 (28%), Positives = 87/184 (47%), Gaps = 9/184 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG + G +E + LI+V GV Y I P L+ + G ++ ++ QD I L Sbjct: 1 MIGMLHGRVESVDMSSALIEVGGVGYEIRMPSADLASMHA-GQEVKVYTSLNVSQDAITL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ ++ F+ LQ V G+G +VA+ +LS + L ++ ++ +A+ PG+ K Sbjct: 60 FGFLTPASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLAHAVADGDATALAKAPGLGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ ELKG + + + + L++LG+ Q A A Sbjct: 120 AQKIILELKGSIDLSQIETAASVIS--------RPEDTGSEQVVEGLISLGWRQQDALHA 171 Query: 181 VVSV 184 V V Sbjct: 172 VQEV 175 >gi|257456050|ref|ZP_05621253.1| holliday junction DNA helicase RuvA [Treponema vincentii ATCC 35580] gi|257446508|gb|EEV21548.1| holliday junction DNA helicase RuvA [Treponema vincentii ATCC 35580] Length = 202 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 51/211 (24%), Positives = 97/211 (45%), Gaps = 16/211 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + G + V I+ G+ + I+ + G G ++ + R+DQ+RL Sbjct: 1 MFNSISGTLTGKTAESVYIETHGIEWEIFVSTLSADRFGAAGSTVRVYTWLYHREDQMRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ +R F+ L V+G+G + A+ +LS + + L ++ + + IPGI K Sbjct: 61 FGFLTPAERSLFLDLTKVEGIGPKQALKILSGLDSAALEAALEAGDVARLQSIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ LKG+ L + + + S + I AL+++GY + +A Sbjct: 121 AQKMVLALKGQLTGLQDSGRAETA-----------KKSEFEDIIIALIDMGYDRKRAAET 169 Query: 181 VVSVLKKE-----KNIADDSQIIRLALRAIS 206 V + + A + ++ R A+ +S Sbjct: 170 VDAAAQSMRTQGIDPTAKEEELFRTAIVNLS 200 >gi|257459533|ref|ZP_05624642.1| holliday junction DNA helicase RuvA [Campylobacter gracilis RM3268] gi|257442958|gb|EEV18092.1| holliday junction DNA helicase RuvA [Campylobacter gracilis RM3268] Length = 184 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 48/207 (23%), Positives = 86/207 (41%), Gaps = 24/207 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I+G I +I GV Y + + T + L + G L +R+D Sbjct: 1 MIAAIEGIITRKEPTACVIKCASGVSYALSLSLNTSAKLTQ-GKLTELACVQILREDADL 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL + +++ F L + GVGA AM V S + + + ++ + +PGI K Sbjct: 60 LYGFLDESEKKMFETLIKLSGVGASTAMAVCSTLAPQDFARCVATGDAATLTSVPGIGPK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL + ++ A SAL +LG+ +D+ Sbjct: 120 TARRIIAELGD-----------------AKLMEFGPSETYKNEAASALQSLGFKRDKINQ 162 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 + + + S +++ AL+ ++ Sbjct: 163 ILA-----GCSSTNTSDLVKEALKKLA 184 >gi|317178761|dbj|BAJ56549.1| Holliday junction DNA helicase motor protein [Helicobacter pylori F30] Length = 183 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 87/205 (42%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + I+V+GV Y + +RT S L + G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEAHIEVRGVVYEVQVSMRT-SALLQAGQEARLKILQVIKEDVHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+ GI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVQGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETSPVRNEVFLALESLGFKSAE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INKVLKTLKPHLSTEAAIKEALQQL 181 >gi|325474386|gb|EGC77574.1| Holliday junction ATP-dependent DNA helicase ruvA [Treponema denticola F0402] Length = 201 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 51/211 (24%), Positives = 104/211 (49%), Gaps = 15/211 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + G D V ++ G+ + I+ L LG +G ++ + R+DQ+RL Sbjct: 1 MFNSISGILSGKTTDSVYVENSGIEWEIFVSALALDALGTVGKEVKVYTWLYHREDQMRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F+ L V+GVG R A+ ++S + + L +++ + + + PG+ K Sbjct: 61 FGFPNQAERSLFLDLTKVEGVGPRQALKIMSGLNFSSLEKALEEGDLDTLQKAPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ LKGK +L+ V + + V+ E + ++AL +G+ + Sbjct: 121 AQKMILALKGKLTNLNEVSSKGQASVSCE----------YEDIVTALTEMGFERKSVIFQ 170 Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAIS 206 V + ++ K + ++ ++ R ++ A+S Sbjct: 171 VEKIAEEMKAAGSDPLKNEEELFRRSIVALS 201 >gi|326693304|ref|ZP_08230309.1| Holliday junction DNA helicase RuvA [Leuconostoc argentinum KCTC 3773] Length = 197 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 52/206 (25%), Positives = 98/206 (47%), Gaps = 12/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLI-DVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 M I G I +Y Y+++ D GV Y +Y + ++VE +R+++I Sbjct: 1 MYEYINGLITNIYPAYIVVCDRSGVGYKLY-TANPYRF--EQNVESHVYVEQIVRENEIA 57 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF+ + ++ F L +V G+G + A+ +L+ A LV ++ + + Q PG+ K Sbjct: 58 LYGFMDENEKILFNKLLNVSGIGPKSALAILASGDAQGLVNAVANDDVSYLTQFPGVGKK 117 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I+ +LKGK L+ D++ + + +A++AL +LGY + Sbjct: 118 TAQQIILDLKGKLGDLAVSAGLDLTT-----SQPAANNQALADALAALTSLGYSAKEIAK 172 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + L + + D IR AL+ + Sbjct: 173 -IEKTLAQTADTTDG--YIRSALKLL 195 >gi|255322240|ref|ZP_05363386.1| holliday junction DNA helicase RuvA [Campylobacter showae RM3277] gi|255300613|gb|EET79884.1| holliday junction DNA helicase RuvA [Campylobacter showae RM3277] Length = 184 Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 49/207 (23%), Positives = 93/207 (44%), Gaps = 24/207 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I+G I +++ GV Y + + + L + G L + +R+D Sbjct: 1 MIKAIEGIITKKEPANLILKTAGGVSYGVAISLFCSAKL-ERGQSVELNITQIIREDADL 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL +++ F L + G+GA AM V S + + ++ ++ + +PGI K Sbjct: 60 LYGFLDSNEQKMFETLIKLSGIGAATAMAVCSSLNPNAFLNAVKSGDAAALQTVPGIGAK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL +++ + PS AI AL +LG+ +++ T Sbjct: 120 TARRIIAELSDAKMTMDENL-----------------PSHQHEAILALESLGFKREKITK 162 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ E + + ++I+ AL+ ++ Sbjct: 163 ALS-----ECDAQNTGELIKQALKKLA 184 >gi|219871499|ref|YP_002475874.1| holliday junction DNA helicase motor protein [Haemophilus parasuis SH0165] gi|219691703|gb|ACL32926.1| holliday junction DNA helicase motor protein [Haemophilus parasuis SH0165] Length = 171 Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 49/172 (28%), Positives = 82/172 (47%), Gaps = 4/172 (2%) Query: 32 IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91 + + L + + +F +R+D LFGF+ +R F L GVG ++A+ +LS Sbjct: 1 MTSFYNLPDLNEDTMIFTHLVIREDAHLLFGFVQKQERMLFRELIKTNGVGPKLALAILS 60 Query: 92 RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQA 151 ++ +E + +I + + +IPGI K A R++ ELKGK +L + + Sbjct: 61 AMSVSEFMSAIEQEELAKLIKIPGIGRKTAERLLVELKGKFSTLFHHEISILQPSGNLLS 120 Query: 152 HICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 P AI AL++LGY A V V +K + + Q+IR AL+ Sbjct: 121 MASMSP--VNEAIDALISLGYKAADAEKMVKKVNRK--SESTSEQLIREALK 168 >gi|283769122|ref|ZP_06342027.1| Holliday junction DNA helicase RuvA [Bulleidia extructa W1219] gi|283104308|gb|EFC05686.1| Holliday junction DNA helicase RuvA [Bulleidia extructa W1219] Length = 192 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 98/206 (47%), Gaps = 16/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G I + +DY++I+ QG+ +++Y P +G+ +F + ++ +RL Sbjct: 1 MIAFIQGVITEIGDDYIVINHQGLGWLVYYPHSLE---VHVGEELQVFTHMSVSENDMRL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++ F+ L SV+G+G + AM +L + + E+I + + ++PGI K Sbjct: 58 YGFSSSKEKTLFLNLISVKGLGPKTAMTMLQKSGYALITEAISKGDVAALKKLPGIGAKS 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +L+GK + V + + P A+ AL N GY Sbjct: 118 ASQIVLDLQGKLV-----------AVEVSSTKMMNYPLEIQEALEALKNFGYKGGDLNVV 166 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 +L E+ + IR L+ + Sbjct: 167 GNKML--EQPSMKTEEYIRFGLKFFA 190 >gi|42527369|ref|NP_972467.1| Holliday junction DNA helicase RuvA [Treponema denticola ATCC 35405] gi|81411982|sp|Q73LJ9|RUVA_TREDE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|41817954|gb|AAS12378.1| Holliday junction DNA helicase RuvA [Treponema denticola ATCC 35405] Length = 201 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 51/211 (24%), Positives = 105/211 (49%), Gaps = 15/211 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + G D V ++ G+ + I+ L LG +G ++ + R+DQ+RL Sbjct: 1 MFNSISGILSGKTTDSVYVENSGIEWEIFVSALALDALGTVGKEVKVYTWLYHREDQMRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F+ L V+GVG R A+ ++S + ++ L +++ + + + PG+ K Sbjct: 61 FGFPNQAERSLFLDLTKVEGVGPRQALKIMSGLNSSSLEKALEEGDLDTLQKAPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ LKGK +L+ V + + V+ E + ++AL +G+ + Sbjct: 121 AQKMILALKGKLTNLNEVSSKGQASVSCE----------YEDIVTALTEMGFERKSVIVQ 170 Query: 181 VVSVLKKEK-----NIADDSQIIRLALRAIS 206 V + ++ K + ++ ++ R ++ A+S Sbjct: 171 VEKIAEEMKAAGSDPLKNEEELFRRSIVALS 201 >gi|116327800|ref|YP_797520.1| Holliday junction specific DNA binding protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331541|ref|YP_801259.1| Holliday junction specific DNA binding protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122280714|sp|Q04RG9|RUVA_LEPBJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|122284404|sp|Q053A8|RUVA_LEPBL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|116120544|gb|ABJ78587.1| Holliday junction specific DNA binding protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125230|gb|ABJ76501.1| Holliday junction specific DNA binding protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 212 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 52/213 (24%), Positives = 97/213 (45%), Gaps = 9/213 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKI--GDFCTLFVETHMRQDQI 58 MI +KG ++ L Y I+ G+ Y + +T L + + + M + Sbjct: 1 MISGLKGTLKKLEVGYAHIETGGITYEVTISFKTYLELKSLPSHNEVQFQIFHAMNERGQ 60 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +LFGFL++ D+++F +++ +QG+G A+ +LS +A EL +K + +IP + Sbjct: 61 KLFGFLTEQDKEFFKVIKGLQGIGELTALKILSFFSAEELYRIAQSGEAKELEKIPKVKG 120 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVN------KEQAHICSMPSFAINAISALVNLGY 172 K + +I E+K L + + E ++ AI LV LG+ Sbjct: 121 KTSEKIFFEVKQNLKKLELFLSGTSKEPSISLSSFSETPEEAALSRKREIAILGLVQLGF 180 Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + A+ V +LK + D +IIR L+++ Sbjct: 181 EEKTASKEVDKILKSS-SPTDPGEIIREILKSL 212 >gi|171742914|ref|ZP_02918721.1| hypothetical protein BIFDEN_02031 [Bifidobacterium dentium ATCC 27678] gi|171278528|gb|EDT46189.1| hypothetical protein BIFDEN_02031 [Bifidobacterium dentium ATCC 27678] Length = 202 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 52/206 (25%), Positives = 95/206 (46%), Gaps = 14/206 (6%) Query: 5 IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64 + G +E + LI+V GV Y P L+ + G ++ ++ QD I LFGFL Sbjct: 2 LHGRVESVDMSSALIEVGGVGYETRMPSADLASMHA-GQEVKVYTSLNVSQDAITLFGFL 60 Query: 65 SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 + ++ F+ LQ V G+G +VA+ +LS + L ++ ++ +A+ PG+ K A +I Sbjct: 61 TPASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLAHAVADGDATALAKAPGLGKKGAQKI 120 Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV 184 + ELKG + + + + L++LG+ Q A AV V Sbjct: 121 ILELKGSIDLSQIETAASVIS--------RPEDTGSEQVVEGLISLGWRQQDALHAVQEV 172 Query: 185 LKKEK-----NIADDSQIIRLALRAI 205 + + D ++++LAL ++ Sbjct: 173 CRSNDIATPLSNEDVPRVLKLALTSL 198 >gi|281412224|ref|YP_003346303.1| Holliday junction DNA helicase RuvA [Thermotoga naphthophila RKU-10] gi|281373327|gb|ADA66889.1| Holliday junction DNA helicase RuvA [Thermotoga naphthophila RKU-10] Length = 188 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 102/207 (49%), Gaps = 22/207 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I G + + +L++ GV + I C ++T + K G+ C L ++ QD I Sbjct: 1 MIAGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTSEEV-KEGEECFLHTFLNVSQDGIT 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF ++ ++ F+ L V +G + A+ ++S A LV I Q+ + ++++PGIS K Sbjct: 60 LYGFSNERKKELFLSLTKVSRLGPKTALKIISNEDAETLVTMIASQDVEGLSKLPGISKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ ELK + ++ ++ ALV+LGY + QA Sbjct: 120 TAERIVMELKD-----------------EFESAGIKDMRIYHESLEALVSLGYPEKQARE 162 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV V ++ S++I+ AL+ +S Sbjct: 163 AVKHVYREGMK---TSELIKEALKFLS 186 >gi|317009536|gb|ADU80116.1| Holliday junction DNA helicase RuvA [Helicobacter pylori India7] Length = 183 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + V I+ QGV Y + +RT + L + G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEVHIEAQGVVYGVQVSMRT-AALLQAGQKARLKILQVIKEDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETSPVRNEVFLALESLGFKSAE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INKVLKTLKPNLSIEAAIKEALQQL 181 >gi|284991600|ref|YP_003410154.1| Holliday junction DNA helicase RuvA [Geodermatophilus obscurus DSM 43160] gi|284064845|gb|ADB75783.1| Holliday junction DNA helicase RuvA [Geodermatophilus obscurus DSM 43160] Length = 212 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 59/211 (27%), Positives = 102/211 (48%), Gaps = 8/211 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + D +++V GV + C T++ L ++G+ L +R+D + L Sbjct: 1 MIASVNGRVAAVSPDGAVVEVGGVGLAVQCTPGTIARL-QVGESARLATSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D +RQ F LLQ+ GVG R+A VL+ E+ ++ + + K + Q+PGI K Sbjct: 60 YGFADDDERQLFELLQTANGVGPRLAQAVLAIHPPREVRRAVSMADVKALMQVPGIGKKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ EL+ + S+ Q D + A P + SALV LG+ +A A Sbjct: 120 AERLILELRDRLGVTSTDTQLDGAAPAGLPAVTPVAP-WRDQLASALVGLGWTGKEADAA 178 Query: 181 VVSVLK------KEKNIADDSQIIRLALRAI 205 + + + + ++R ALR + Sbjct: 179 IGQLAPLADEQVTSTGSVEVAVLLRQALRLL 209 >gi|145628663|ref|ZP_01784463.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae 22.1-21] gi|144979133|gb|EDJ88819.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae 22.1-21] Length = 124 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 63/119 (52%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +L++VQGV Y + P+ + L +IG TLF +R+D L Sbjct: 1 MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 FGF DR F L GVG ++A+ +LS ++ + +I + + +IPG+ K Sbjct: 61 FGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKK 119 >gi|61657364|emb|CAI44281.1| holliday junction DNA helicase [Thermotoga naphthophila RKU-10] Length = 191 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 102/207 (49%), Gaps = 22/207 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I G + + +L++ GV + I C ++T + K G+ C L ++ QD I Sbjct: 4 MIAGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTSEEV-KEGEECFLHTFLNVSQDGIT 62 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF ++ ++ F+ L V +G + A+ ++S A LV I Q+ + ++++PGIS K Sbjct: 63 LYGFSNERKKELFLSLTKVSRLGPKTALKIISNEDAETLVTMIASQDVEGLSKLPGISKK 122 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ ELK + ++ ++ ALV+LGY + QA Sbjct: 123 TAERIVMELKD-----------------EFESAGIKDMRIYHESLEALVSLGYPEKQARE 165 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV V ++ S++I+ AL+ +S Sbjct: 166 AVKHVYREGMK---TSELIKEALKFLS 189 >gi|126696254|ref|YP_001091140.1| putative holliday junction DNA helicase RuvA [Prochlorococcus marinus str. MIT 9301] gi|166230582|sp|A3PCR4|RUVA_PROM0 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|126543297|gb|ABO17539.1| putative holliday junction DNA helicase RuvA [Prochlorococcus marinus str. MIT 9301] Length = 225 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 53/218 (24%), Positives = 112/218 (51%), Gaps = 15/218 (6%) Query: 1 MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLGKIG---DFCTLFVETHM 53 MI I G++ L++ +VLI+ QG+ Y I L K TL+V+ Sbjct: 1 MISWINGDLVDLWQTNQKFFVLINCQGLGYEIQILESFFLKLRKNQISTKNITLWVKHIK 60 Query: 54 RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113 ++D LFGF S+ + +F+ + S++GVG+++ +G+L++ + +E++ +I Q+ K+I + Sbjct: 61 KEDSDLLFGFTSNEQKNFFIEILSIRGVGSQIGIGILNKFSISEVINAIKTQDKKLICSV 120 Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 PGI K++ R++ ELK K S ++ ++ + + + + L +L Y Sbjct: 121 PGIGQKMSERLILELKSKFK--SEILSEEEKSKGELEIKDPEINKMIEDLQLTLQSLSYK 178 Query: 174 QDQATTAVVSVLKK------EKNIADDSQIIRLALRAI 205 + + ++K+ ++N ++++LA+R + Sbjct: 179 NKEINNILPIIIKEIDLLGKKENNLSFEKLLKLAMRYL 216 >gi|57167798|ref|ZP_00366938.1| Holliday junction DNA helicase RuvA [Campylobacter coli RM2228] gi|305432180|ref|ZP_07401344.1| crossover junction ATP-dependent DNA helicase RuvA [Campylobacter coli JV20] gi|57020920|gb|EAL57584.1| Holliday junction DNA helicase RuvA [Campylobacter coli RM2228] gi|304444723|gb|EFM37372.1| crossover junction ATP-dependent DNA helicase RuvA [Campylobacter coli JV20] Length = 183 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 51/207 (24%), Positives = 97/207 (46%), Gaps = 25/207 (12%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 M+ I+G I + +I G+ Y ++ + + L + LF+ +++D + Sbjct: 1 MVVAIEGIITKKEPTFAIIKCASGLSYGVFISLFCAAKL-ETHQKYELFITQIIKEDSNK 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GFL +++ F +L V GVGA AM + S + +++ L + V+ ++PGI K Sbjct: 60 FYGFLDKDEQKMFEMLLKVNGVGASTAMAICSSLDVNSFYKALNLGDESVLKKVPGIGPK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL + L SV A++AL++LG+ QD+ + Sbjct: 120 SAKRIIVELGDAKVQLESV------------------SDDKSEALAALLSLGFKQDKILS 161 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 + + N D S++I+ AL+ ++ Sbjct: 162 VLST-----CNGKDTSELIKEALKKLA 183 >gi|183220888|ref|YP_001838884.1| Holliday junction DNA helicase RuvA [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910985|ref|YP_001962540.1| Holliday junction specific DNA binding protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|229560095|sp|B0SGZ5|RUVA_LEPBA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560096|sp|B0SQF0|RUVA_LEPBP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|167775661|gb|ABZ93962.1| Holliday junction specific DNA binding protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779310|gb|ABZ97608.1| Holliday junction DNA helicase RuvA [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 199 Score = 117 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 50/201 (24%), Positives = 87/201 (43%), Gaps = 9/201 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIR-TLSCLGKIGDFCTLFVETHMRQDQIR 59 MI ++G + L D ++++V GV Y + P L C K+ + + R Sbjct: 1 MIASLRGKLLQLEIDRLVVEVSGVGYEVMIPFPLHLECKDKLNTEIYIHTFHSITDRGQR 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF S DR+ F L++S+ G+G A+ +LS A +L + + K + +IP + K Sbjct: 61 LFGFGSKKDRESFELIKSLHGIGELTALKILSFFQADDLYQIAKADDKKTLEKIPKVKGK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 + +I+ E+K + + + + A AL+ LG+ + AT Sbjct: 121 TSEKILFEIKQNLKKFEMFLNEGTTESSFVDRETDL-------ATLALIQLGFDEKSATK 173 Query: 180 AVVSVLKKEKNIADDSQIIRL 200 V KK S I++ Sbjct: 174 QVADA-KKLNPGLSASDIVKQ 193 >gi|58698305|ref|ZP_00373222.1| Holliday junction DNA helicase RuvA, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|225630965|ref|YP_002727756.1| Holliday junction DNA helicase RuvA [Wolbachia sp. wRi] gi|254767402|sp|C0R4X3|RUVA_WOLWR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|58535178|gb|EAL59260.1| Holliday junction DNA helicase RuvA, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|225592946|gb|ACN95965.1| Holliday junction DNA helicase RuvA [Wolbachia sp. wRi] Length = 190 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 62/208 (29%), Positives = 114/208 (54%), Gaps = 22/208 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMR--QDQI 58 MIG + G ++ + D+++++V V Y++Y +TLS IG L +ET+ ++ Sbjct: 1 MIGNLSGIVDEVRSDHIILNVNDVGYMVYLSAKTLSA-CAIGSRIKLLIETYANNRENTT 59 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +L+GF+S+ ++Q LL V GV + AM +LS++T +L +I+ ++ + ++ G+ + Sbjct: 60 QLYGFISEEEQQCLRLLVKVSGVSYKTAMSILSKLTPEQLFLAIMNEDKVTL-KMSGLGL 118 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K+ +RI+TEL GK L + + + +A+SAL+NLGY + +A Sbjct: 119 KLINRIITELSGKVSKL--------------EINNNNFHPINEDALSALINLGYEKMKAY 164 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 + KK + D IIR+AL+ +S Sbjct: 165 DTI----KKYRPNLDTKDIIRMALKELS 188 >gi|300768015|ref|ZP_07077921.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300494364|gb|EFK29526.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 220 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 89/205 (43%), Gaps = 7/205 (3%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 G + + YV+I+V G+ Y + +G +++ + ++ + LF Sbjct: 19 YEYFLGQVTDVTPGYVVIEVSGIGYKVLTANPYRYQVGPT--AVKMYIHQAVSENGMSLF 76 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF ++ F L V G+G + A+ +L+ L+++I +N+ + PG+ K A Sbjct: 77 GFFDADEKALFEKLLGVSGIGPKSALAILANNDHAGLIQAINQENATYLTSFPGVGKKTA 136 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 +I+ +LKGK L+ D++ ++ +A++AL LGY + Sbjct: 137 QQIVLDLKGKLNDLN----VDVTGQTALDVDAPAVDGALADALAALEALGYSKADVKKVT 192 Query: 182 VSVLK-KEKNIADDSQIIRLALRAI 205 + + AD + ++ LR + Sbjct: 193 KKLETFSQTQGADTNTLLSEGLRLL 217 >gi|300787173|ref|YP_003767464.1| holliday junction DNA helicase RuvA [Amycolatopsis mediterranei U32] gi|299796687|gb|ADJ47062.1| holliday junction DNA helicase RuvA [Amycolatopsis mediterranei U32] Length = 198 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 100/205 (48%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+V+++V GV + + TL+ L + G+ L +R+D + L Sbjct: 1 MISSVRGEVLIVGLDHVVVEVGGVGFAVQATPATLATL-RRGEEARLHTALVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF R+ F LLQ+V G+G R+A+ L+ + +L +++ N V+ +PGI K Sbjct: 60 FGFADADARELFGLLQTVSGIGPRLALATLAVLDPGKLRAALVEGNITVLTSVPGIGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ EL+ K +L+ + + + + AL LG+ QA A Sbjct: 120 AERLTLELRDKVTALAGTGDVPA---------VTAPGALRAEVVEALAGLGFPAKQAEQA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V VL + + + ++R AL + Sbjct: 171 VDKVLA-DGDGHTTAGVLRAALATL 194 >gi|154249486|ref|YP_001410311.1| Holliday junction DNA helicase RuvA [Fervidobacterium nodosum Rt17-B1] gi|171769439|sp|A7HL71|RUVA_FERNB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|154153422|gb|ABS60654.1| Holliday junction DNA helicase RuvA [Fervidobacterium nodosum Rt17-B1] Length = 188 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 20/206 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G +G E +L+ + GV + I + S + GD ++ + + Q+ + + Sbjct: 1 MIEIIEGIYKGRSEGKILVSINGVVFGIITDAESFSEFNE-GDKILVYTKLIVSQEDMTI 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S + ++ F L V +G + A+ +LS T L +I + + ++ IPGI K Sbjct: 60 YGFDSKVKKETFEKLIKVSKLGPKTAIKILSSTTVDFLSNAIATGDVEKLSSIPGIGRKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++TELK + + + AI ALV+LGY + QA A Sbjct: 120 AERMITELKDEFEVVEVNEEMLE-------------------AIEALVSLGYSKTQARNA 160 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V VLK+ NI++ S+II+ AL+ ++ Sbjct: 161 VSKVLKESPNISNVSKIIKEALKILA 186 >gi|225164626|ref|ZP_03726870.1| Holliday junction resolvasome DNA-binding subunit-like protein [Opitutaceae bacterium TAV2] gi|224800771|gb|EEG19123.1| Holliday junction resolvasome DNA-binding subunit-like protein [Opitutaceae bacterium TAV2] Length = 219 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 69/154 (44%), Gaps = 1/154 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + ++++ G Y + P+ T L +G L R+D L Sbjct: 1 MITSIQGLLTEATPLRAVVEINGFGYEVNIPVTTAEKLPAVGAKVKLHTIVIYREDAQTL 60 Query: 61 FGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GF S +R +F L+ V GVG ++A+ ++SR++ L +I + +++ PGI K Sbjct: 61 YGFASPEERDFFRLMIEQVSGVGPKLALTIMSRMSLPVLEGAIRAGDISSLSKCPGIGKK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHI 153 A R++ EL+ K + + Sbjct: 121 TAERLVVELRAKVGASPAGGDAGSPVAGDGGTSS 154 >gi|42520918|ref|NP_966833.1| Holliday junction DNA helicase RuvA [Wolbachia endosymbiont of Drosophila melanogaster] gi|99035955|ref|ZP_01315000.1| hypothetical protein Wendoof_01000161 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] gi|81652227|sp|Q73G51|RUVA_WOLPM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|42410659|gb|AAS14767.1| Holliday junction DNA helicase RuvA [Wolbachia endosymbiont of Drosophila melanogaster] Length = 190 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 60/208 (28%), Positives = 112/208 (53%), Gaps = 22/208 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMR--QDQI 58 MIG + G ++ + D+++++V V Y++Y +TL+ IG L +ET+ ++ Sbjct: 1 MIGNLSGIVDEVRSDHIILNVNDVGYMVYLSAKTLNA-CSIGSRVKLLIETYANNRENVA 59 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +L+GF+S ++Q LL V GV + AM +L ++T +L +I+ ++ + ++ G+ + Sbjct: 60 QLYGFISKEEQQCLRLLVKVSGVSYKTAMSILGKLTPEQLFLAIMNEDKVAL-KMSGLGL 118 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K+ +RI+TEL GK L + + + +A+SAL+NLGY + +A Sbjct: 119 KLINRIITELSGKVSKL--------------EINNNNFHPINEDALSALINLGYEKMKAY 164 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 + KK + D IIR+AL+ +S Sbjct: 165 DTI----KKYRPNLDTKDIIRMALKELS 188 >gi|199598072|ref|ZP_03211495.1| Holliday junction resolvasome, DNA-binding subunit [Lactobacillus rhamnosus HN001] gi|258507747|ref|YP_003170498.1| Holliday junction DNA helicase RuvA [Lactobacillus rhamnosus GG] gi|258538937|ref|YP_003173436.1| Holliday junction DNA helicase RuvA [Lactobacillus rhamnosus Lc 705] gi|84627155|gb|ABC59820.1| RuvA [Lactobacillus rhamnosus GG] gi|199590998|gb|EDY99081.1| Holliday junction resolvasome, DNA-binding subunit [Lactobacillus rhamnosus HN001] gi|257147674|emb|CAR86647.1| Holliday junction DNA helicase RuvA [Lactobacillus rhamnosus GG] gi|257150613|emb|CAR89585.1| Holliday junction DNA helicase RuvA [Lactobacillus rhamnosus Lc 705] gi|259649095|dbj|BAI41257.1| holliday junction DNA helicase RuvA [Lactobacillus rhamnosus GG] Length = 198 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 47/206 (22%), Positives = 94/206 (45%), Gaps = 11/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G I+ + Y++IDV G+ + + + G ++V+ +R++ L Sbjct: 1 MYEYFEGTIQAVTPAYIVIDVNGIGFRLLV-ANPYDF--EAGKQTRIYVQLIIRENDQTL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + D++ F L SV G+G + A+ +L+ +++ L +I + K + + PGI K Sbjct: 58 YGFETAADKRTFNQLLSVTGIGPKSALAILANVSSGGLATAIAQDDVKFLTKFPGIGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A++I+ +LKGK + + + + A + A+ A+ GY Q Sbjct: 118 AAQIILDLKGKITTDAQPAAATIMPTADQVAPELADALAALVAL------GYTQRAVDGI 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 ++ K + +R LR +S Sbjct: 172 TDAL--KAFDATTTDAYLREGLRLLS 195 >gi|83590537|ref|YP_430546.1| Holliday junction DNA helicase subunit RuvA [Moorella thermoacetica ATCC 39073] gi|123725675|sp|Q2RHT6|RUVA_MOOTA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|83573451|gb|ABC20003.1| Holliday junction DNA helicase subunit RuvA [Moorella thermoacetica ATCC 39073] Length = 202 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 46/203 (22%), Positives = 94/203 (46%), Gaps = 9/203 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG ++G + + + +L++ G+ +++ T G ++ + +R+D + L Sbjct: 1 MIGYLRGRLHLVTPEGILLETGGIGWLVRT--VTNRSWPAPGTEIAVYTQLVVREDAMEL 58 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + F LL+ V G+G R A+ +L +L +I +S + +PGI K Sbjct: 59 YGFTRPEELHLFTLLRGVNGIGPRGALQILGAAKPEQLSRAIAAGDSAFLTALPGIGAKK 118 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + V + I + A++AL+ LGY +++ Sbjct: 119 AQRLLLELKDAVLKSGLVDGTETEA-------IPAGGGDNDEALAALLALGYSREEIGPI 171 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 + V ++ N A + +++ L+ Sbjct: 172 LARVRQELGNAAPTTAVLQAVLK 194 >gi|320537837|ref|ZP_08037755.1| Holliday junction DNA helicase RuvA [Treponema phagedenis F0421] gi|320145314|gb|EFW37012.1| Holliday junction DNA helicase RuvA [Treponema phagedenis F0421] Length = 203 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 53/211 (25%), Positives = 99/211 (46%), Gaps = 16/211 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + + I+ G+ + + ++L G +G +F + R+DQ+RL Sbjct: 1 MFNSINGVLTEKSSESICIETHGIEWSVAVSAKSLDSFGMVGATVRVFTWLYHREDQMRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F+ L V G+G + A+ +LS ITA L ++ + ++ IPG+ K Sbjct: 61 FGFPTREERALFLDLIKVDGIGPKQALRILSGITAENLETALEEGDVHLLQTIPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +++ LKG+ ++ + + S + I ALV +GY + AT Sbjct: 121 AQKMVLALKGQLSNIHEIGKS-----------ASIPQSEFEDIIQALVQMGYDRKAATEQ 169 Query: 181 VVSVL-----KKEKNIADDSQIIRLALRAIS 206 V + K +++++ R A+ A+S Sbjct: 170 VEAAASALRSKGANPQENENELFRSAIVALS 200 >gi|302527851|ref|ZP_07280193.1| Holliday junction DNA helicase RuvA [Streptomyces sp. AA4] gi|302436746|gb|EFL08562.1| Holliday junction DNA helicase RuvA [Streptomyces sp. AA4] Length = 198 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 11/205 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+V+++V GV + TL+ L + G+ L +R+D + L Sbjct: 1 MISSVRGEVLSVGLDHVVVEVGGVGLAVQATPATLATL-RRGEQTRLHTALVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + R+ F LLQ+V G+G R+A+ L+ + +L +++ N V+ Q+PGI K Sbjct: 60 FGFAEEDARELFGLLQTVSGIGPRLALATLAVLEPDKLRAALVEGNITVLTQVPGIGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+ EL+ K +L + + + + + AL LG+ QA A Sbjct: 120 AERLSLELRDKVTALGGASDAPV---------VTAPGALRGEVVEALAGLGFPAKQAEQA 170 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V VL E + S ++R AL A+ Sbjct: 171 VDKVL-SEGDGHTTSSVLRAALAAL 194 >gi|206901849|ref|YP_002251320.1| holliday junction DNA helicase RuvA [Dictyoglomus thermophilum H-6-12] gi|206740952|gb|ACI20010.1| holliday junction DNA helicase RuvA [Dictyoglomus thermophilum H-6-12] Length = 193 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 54/204 (26%), Positives = 97/204 (47%), Gaps = 20/204 (9%) Query: 4 KIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIRLFG 62 I G + + ED+V++D + IY L + +GD L+V + +D ++LFG Sbjct: 6 HIYGKLLRIAEDFVVVDTGAFGFKIYIGKNLALKLNEKLGDNVLLYVAEVIEKDNVKLFG 65 Query: 63 FLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIAS 122 FLS+ +R F L+++ GVG ++A+ ++S + E E + ++ + IPGI KIA Sbjct: 66 FLSEEERDLFESLKNITGVGVKIALRIVSTLPPKEFYEVLEKEDLNTLLNIPGIGKKIAQ 125 Query: 123 RIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVV 182 +I E+KG +AL+NLGY + + Sbjct: 126 KIFLEIKGVIPK-------------------RVYNDEENVIKNALLNLGYDKKDIELVMR 166 Query: 183 SVLKKEKNIADDSQIIRLALRAIS 206 + K+ K++ + +II+ AL+ +S Sbjct: 167 DIRKEFKSLDNLEEIIKFALKRLS 190 >gi|217967994|ref|YP_002353500.1| DNA recombination protein RuvA domain I [Dictyoglomus turgidum DSM 6724] gi|217337093|gb|ACK42886.1| DNA recombination protein RuvA domain I [Dictyoglomus turgidum DSM 6724] Length = 192 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 50/204 (24%), Positives = 97/204 (47%), Gaps = 21/204 (10%) Query: 4 KIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQIRLFG 62 I G + ++ D ++ID + IY S L ++ + L++ + +D I+ FG Sbjct: 6 HIYGKLLKIHGDSLIIDTGNFGFKIYVSKNLTSKLSEELNNKILLYIAEVIEKDGIKFFG 65 Query: 63 FLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIAS 122 FLS+ +R F L+++ GVG ++A+ ++S ++ E E I ++ + +PG+ KI Sbjct: 66 FLSEEERDLFERLKNITGVGIKIALRIVSAMSPKEFYEVIEKEDLNALLMVPGVGKKITQ 125 Query: 123 RIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVV 182 +I E+KG + + L+NLGY +++ + Sbjct: 126 KIFLEIKGVIPKREHKEEDIIK--------------------DTLLNLGYKKEEIEVVMK 165 Query: 183 SVLKKEKNIADDSQIIRLALRAIS 206 + K+ K++ + +IIR ALR +S Sbjct: 166 EIRKEFKDLDNLEEIIRFALRKLS 189 >gi|223040201|ref|ZP_03610480.1| holliday junction DNA helicase RuvA [Campylobacter rectus RM3267] gi|222878562|gb|EEF13664.1| holliday junction DNA helicase RuvA [Campylobacter rectus RM3267] Length = 184 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 48/207 (23%), Positives = 94/207 (45%), Gaps = 24/207 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I+G I +++ GV Y + + + L + G L + +R+D Sbjct: 1 MIKAIEGVITKKEPANLILKTAGGVSYGVAISLFCSAKL-ERGQSVELNITQIIREDADL 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL +++ F L + G+GA AM V S + + ++ ++ + +PGI K Sbjct: 60 LYGFLDSNEQKMFETLIKLSGIGAATAMAVCSSLNPNAFLNAVKSGDAAALQTVPGIGAK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL +++ + PS+ AI AL +LG+ +++ T Sbjct: 120 TARRIIAELSDAKMTMDENL-----------------PSYQHEAILALESLGFKREKITK 162 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ E + + ++++ AL+ ++ Sbjct: 163 ALS-----ECDAQNTGELVKQALKKLA 184 >gi|312880160|ref|ZP_07739960.1| DNA recombination protein RuvA domain I [Aminomonas paucivorans DSM 12260] gi|310783451|gb|EFQ23849.1| DNA recombination protein RuvA domain I [Aminomonas paucivorans DSM 12260] Length = 198 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 44/196 (22%), Positives = 79/196 (40%), Gaps = 11/196 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + + IDV G ++ L + G L + + L Sbjct: 1 MIRSLSGVVESARDGALWIDVNGFGLEVFASRTVLEQ-AEEGHPLRLLAQLILTDSGPSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F L V+ +G R+AM +L + ELV +I Q+ + + PG+ K Sbjct: 60 YGFGGEEERRLFQELIQVKNIGGRMAMALLRVFSVAELVAAIRAQDVASLGRAPGVGAKR 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI EL+ K L + + + + AL LG+ + A +A Sbjct: 120 AERICFELRPKLDRLFGTAAGETG----------PLEAGVESLADALEGLGFSRSTARSA 169 Query: 181 VVSVLKKEKNIADDSQ 196 + + + + Sbjct: 170 LEEARRSLEGEEPAEE 185 >gi|24215603|ref|NP_713084.1| Holliday junction DNA helicase RuvA [Leptospira interrogans serovar Lai str. 56601] gi|24196756|gb|AAN50102.1| holliday junction DNA helicase RuvA [Leptospira interrogans serovar Lai str. 56601] Length = 212 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 51/213 (23%), Positives = 97/213 (45%), Gaps = 9/213 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIG--DFCTLFVETHMRQDQI 58 MI +KG ++ L +V I+ G+ Y + +T L + L + + + Sbjct: 1 MISGLKGTLKKLEVGFVHIETGGITYEVTISFKTYLELKNLPLLKEVQLQIFHSINERGQ 60 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +LFGFL++ D+++F +++ +QG+G A+ +LS +A +L + +K + +IP + Sbjct: 61 KLFGFLTEQDKEFFKVMKGLQGIGELTALKILSFFSAEDLYRIVQSGEAKELEKIPKVKG 120 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF------AINAISALVNLGY 172 K + +I E+K L + + + P I LV LG+ Sbjct: 121 KTSEKIFFEVKQNLKKLELFLSGSSKESSVILTSLLQSPEEMAFSKKRETVILGLVQLGF 180 Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + A+ V VLK + D +IIR L+++ Sbjct: 181 EEKTASKEVDKVLKIFSSN-DPGEIIREILKSL 212 >gi|33861499|ref|NP_893060.1| putative holliday junction DNA helicase RuvA [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|44888410|sp|Q7V1D3|RUVA_PROMP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|33634076|emb|CAE19401.1| putative holliday junction DNA helicase RuvA [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 219 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 44/218 (20%), Positives = 99/218 (45%), Gaps = 15/218 (6%) Query: 1 MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLGKIG---DFCTLFVETHM 53 MI IKG + ++ Y+L++ QG+ Y I + L+++ Sbjct: 1 MISWIKGELVSSWQANNKFYILVNCQGLGYEIQTLESVFFDINSNKISEKEIILWLKHIK 60 Query: 54 RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113 ++D LFGF + R +F+ + +++G+G+++ M +L++ + +L+ +I + K I+ + Sbjct: 61 KEDSDMLFGFSTKDQRDFFIQILNIKGIGSQIGMSLLNKFSLNQLITAISNNDKKSISTV 120 Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 GI K+ RI+ ELK K ++ ++++ +N + S + L +L Y Sbjct: 121 QGIGQKMTERIILELKSKV--INKEIEKENLNINNFLEKNKDLDSIFKDIDLTLQSLNYS 178 Query: 174 QDQATTAVVSVLKK------EKNIADDSQIIRLALRAI 205 + + ++ EK +++ A+ + Sbjct: 179 KKEIKNLFPKLINNIKNSSLEKESISFENLLKEAMNYL 216 >gi|325295513|ref|YP_004282027.1| Holliday junction ATP-dependent DNA helicase ruvA [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065961|gb|ADY73968.1| Holliday junction ATP-dependent DNA helicase ruvA [Desulfurobacterium thermolithotrophum DSM 11699] Length = 188 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 86/206 (41%), Gaps = 22/206 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG + Y D + + + + ++ P+ L+ + + T + L Sbjct: 1 MIDYLKGKVIFKYSDSISLLCGSIAFRVFVPLNLLTEIREGDKVALFVKFTLPSEGTPSL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R +F L + VG++VAM V+S + EL + ++ K ++ +PG+ K+ Sbjct: 61 YGFKTREERVFFEELLKIPKVGSKVAMSVISHFSLDELRNIVSTKDVKTLSTVPGLGKKL 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 + R++ ELK K I + + L L Y + + A Sbjct: 121 SERVILELKDKPI-------------------FGEERNIPSELLEILTALSYSRKEVVKA 161 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V + + ++++ ++ +S Sbjct: 162 VEGI---DLKDRSIEELVKEVVKKLS 184 >gi|229553780|ref|ZP_04442505.1| crossover junction endoribonuclease subunit A [Lactobacillus rhamnosus LMS2-1] gi|229312854|gb|EEN78827.1| crossover junction endoribonuclease subunit A [Lactobacillus rhamnosus LMS2-1] Length = 212 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 47/206 (22%), Positives = 94/206 (45%), Gaps = 11/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G I+ + Y++IDV G+ + + + G ++V+ +R++ L Sbjct: 15 MYEYFEGTIQAVTPAYIVIDVNGIGFRLLV-ANPYDF--EAGKQTRIYVQLIIRENDQTL 71 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + D++ F L SV G+G + A+ +L+ +++ L +I + K + + PGI K Sbjct: 72 YGFETAADKRTFNQLLSVTGIGPKSALAILANVSSGGLATAIAQDDVKFLTKFPGIGKKT 131 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A++I+ +LKGK + + + + A + A+ A+ GY Q Sbjct: 132 AAQIILDLKGKITTDAQPAAATIMPTADQVAPELADALAALVAL------GYTQRAVDGI 185 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 ++ K + +R LR +S Sbjct: 186 TDAL--KAFDATTTDAYLREGLRLLS 209 >gi|45657032|ref|YP_001118.1| DNA helicase subunit A [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|81407392|sp|Q72T73|RUVA_LEPIC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|45600269|gb|AAS69755.1| DNA helicase subunit A [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 212 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 51/213 (23%), Positives = 95/213 (44%), Gaps = 9/213 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIG--DFCTLFVETHMRQDQI 58 MI +KG + L +V I+ G+ Y + +T L + L + + + Sbjct: 1 MISGLKGILRKLEVGFVHIETGGITYEVTISFKTYLELKNLPLLKEVQLQIFHSINERGQ 60 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +LFGFL++ D+++F +++ +QG+G A+ +LS +A +L + K + +IP + Sbjct: 61 KLFGFLTEQDKEFFKVMKGLQGIGELTALKILSFFSAEDLYRIVQSGEVKELEKIPKVKG 120 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF------AINAISALVNLGY 172 K + +I E+K L + + + P I LV LG+ Sbjct: 121 KTSEKIFFEVKQNLKKLELFLSGSSKESSVILTSLLQSPEEMAFSKKRETVILGLVQLGF 180 Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + A+ V VLK + D +IIR L+++ Sbjct: 181 EEKTASKEVDKVLKIFSSN-DPGEIIREILKSL 212 >gi|322378554|ref|ZP_08053000.1| Holliday junction DNA helicase motor protein [Helicobacter suis HS1] gi|322380312|ref|ZP_08054527.1| Holliday junction DNA helicase motor protein [Helicobacter suis HS5] gi|321147264|gb|EFX41949.1| Holliday junction DNA helicase motor protein [Helicobacter suis HS5] gi|321149016|gb|EFX43470.1| Holliday junction DNA helicase motor protein [Helicobacter suis HS1] Length = 183 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 87/205 (42%), Gaps = 23/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G I + ++ +++ GV Y ++ + L +++D L Sbjct: 1 MIVGLRGIILQVLPTFIELEINGVVYGVHV---RAGENFESKQEVFLHTAQIIKEDGHSL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL +++ F L V GVG RVA+ +LS + + I ++ K + ++PG+ K+ Sbjct: 58 YGFLQRTEKELFERLLKVNGVGPRVALAILSTYSCADFSVCIQSKDLKALQRVPGVGAKL 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G + Q + A+ L +LG+ +A Sbjct: 118 AGKIMLDLAGLVL----------------QEETEIKDTAIEQAVLGLQSLGFKTTEAFK- 160 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + D +I+LAL+ + Sbjct: 161 ---ICSNLPKGLDTPTLIKLALQQL 182 >gi|332298112|ref|YP_004440034.1| Holliday junction ATP-dependent DNA helicase ruvA [Treponema brennaborense DSM 12168] gi|332181215|gb|AEE16903.1| Holliday junction ATP-dependent DNA helicase ruvA [Treponema brennaborense DSM 12168] Length = 205 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 50/213 (23%), Positives = 97/213 (45%), Gaps = 15/213 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G I + ++ G+ + I P TL L +G+ ++ + R+D ++L Sbjct: 1 MFNSLYGTITAKLPQTIYLETDGIEWDIAVPDTTLDTLPPVGERARVYTWLYHREDAVKL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + DR F+ L V GVGA+ A+ ++S I +LVE++ ++ + ++PG+ K Sbjct: 61 FGFATAADRLLFLDLLKVDGVGAKGALKIMSGIAPRQLVEALDSEDLSQLERLPGVGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A ++M LKGK + + + + I+AL ++GY + Sbjct: 121 AQKMMLTLKGKL--------ALSADSGRGSVQRSPSAAKWQDVITALADMGYDKKVCEET 172 Query: 181 VVSVLK------KEKNIADDSQII-RLALRAIS 206 + + KN A +++ R A+ ++ Sbjct: 173 IDRLEPILAAELDGKNKATQEELMFRRAIVELA 205 >gi|6685946|sp|Q9WY12|RUVA_THEMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA Length = 188 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 101/207 (48%), Gaps = 22/207 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I G + + +L++ GV + I C ++T + K G C L + QD I Sbjct: 1 MIAGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTSEEV-KEGGECFLHTFLSVSQDGIT 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +++ ++ F+ L V +G + A+ ++S A LV I Q+ + ++++PGIS K Sbjct: 60 LYGFSNEMKKELFLSLTKVSRLGPKTALKIISNEDAETLVAMIASQDVEGLSKLPGISKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ ELK + ++ ++ ALV+LGY + QA Sbjct: 120 TAERIVMELKD-----------------EFESAGIKDMRIYHESLEALVSLGYPEKQARE 162 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV V ++ S++I+ AL+ +S Sbjct: 163 AVKQVYREGMK---TSELIKEALKFLS 186 >gi|15642939|ref|NP_227980.1| Holliday junction DNA helicase RuvA [Thermotoga maritima MSB8] gi|4980659|gb|AAD35258.1|AE001701_11 Holliday junction DNA helicase [Thermotoga maritima MSB8] Length = 191 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 101/207 (48%), Gaps = 22/207 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I G + + +L++ GV + I C ++T + K G C L + QD I Sbjct: 4 MIAGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTSEEV-KEGGECFLHTFLSVSQDGIT 62 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +++ ++ F+ L V +G + A+ ++S A LV I Q+ + ++++PGIS K Sbjct: 63 LYGFSNEMKKELFLSLTKVSRLGPKTALKIISNEDAETLVAMIASQDVEGLSKLPGISKK 122 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ ELK + ++ ++ ALV+LGY + QA Sbjct: 123 TAERIVMELKD-----------------EFESAGIKDMRIYHESLEALVSLGYPEKQARE 165 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV V ++ S++I+ AL+ +S Sbjct: 166 AVKQVYREGMK---TSELIKEALKFLS 189 >gi|149175963|ref|ZP_01854580.1| probable holliday junction DNA helicase ruvA [Planctomyces maris DSM 8797] gi|148845117|gb|EDL59463.1| probable holliday junction DNA helicase ruvA [Planctomyces maris DSM 8797] Length = 206 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 15/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQD--- 56 MI I+G + L +I V Y ++ P L IG +L ++ + Sbjct: 1 MITNIRGELIELSLTEAIISVGAFDYEVFIPEFVRRQLQPLIGSEISLKTIQYIEGNPQK 60 Query: 57 ---QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113 RL GF+S +R++F L+ SV GVG + + + R E+ +I ++ K + + Sbjct: 61 GRLTPRLIGFMSHAEREFFELVCSVDGVGVKKTLRAMVR-PVKEVATAIEEKDIKQLTTL 119 Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 PGI +A RI+ +L+ K + +V ++ A AL++LGY Sbjct: 120 PGIGPAVAERIVAKLRRKMTKFALIVAKEFPAEEGH-------TDVFSEAYEALLSLGYS 172 Query: 174 QDQATTAVVSVLKKEKNIADDSQII 198 +A T V ++ + K + + Sbjct: 173 ATEARTKVETIAAEGKKFKSIEEFL 197 >gi|237752874|ref|ZP_04583354.1| holliday junction DNA helicase motor protein [Helicobacter winghamensis ATCC BAA-430] gi|229375141|gb|EEO25232.1| holliday junction DNA helicase motor protein [Helicobacter winghamensis ATCC BAA-430] Length = 193 Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 54/206 (26%), Positives = 90/206 (43%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQIR 59 MI ++G I + + GV Y ++ ++T + IG+ L +R+D Sbjct: 1 MIIALEGEIFLKEPTRLGLKCTGVVYEVFISLQTSQQIQANIGEKLALHTTQIIREDAQM 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGFL L++ F L + GVG +VAM +LS T + + + K + ++PGI K Sbjct: 61 LFGFLELLEKTLFERLIKINGVGPKVAMAILSTYTPQTFAKVVESNDIKSMQRVPGIGPK 120 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL G ++ L + ++ S I AL +LGY D Sbjct: 121 SAGRILVELSGWSLDL-----------VQGESLNVKKDSNLQQVILALESLGYKNDVIAR 169 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + E S +++ AL+ + Sbjct: 170 VTKGLENDE-----VSAMVKAALKRL 190 >gi|189485463|ref|YP_001956404.1| Holliday junction resolvasome DNA-binding subunit RuvA [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|254767397|sp|B1H0B1|RUVA_UNCTG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|170287422|dbj|BAG13943.1| Holliday junction resolvasome DNA-binding subunit RuvA [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 204 Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 53/211 (25%), Positives = 103/211 (48%), Gaps = 13/211 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETH---MRQDQ 57 MI + G ++ D + IDV G+ Y I PI T L + + +++ M Sbjct: 1 MIDYLYGTLDSKSTDGITIDVNGIGYEISVPISTFLKLPETRNPIKIYIVESTAGMYGGV 60 Query: 58 IRLFGFLSDLDRQWFMLLQ-SVQGVGARVAMGVLSRI--TATELVESIILQNSKVIAQIP 114 I L+GF + +R+ ++L++ V G+GA+ AM +I + +II +N ++ +I Sbjct: 61 ISLYGFFTIEEREMYLLIKDKVHGIGAKKAMEYTDKISKSFANFKTAIISKNPSMLNEIF 120 Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 G + K A +++ LK K +++ + ++ + + + AI+ L+ LGY Sbjct: 121 GFTKKTADKLIVALKDKISTVNVLNKEKQTGAETIK------NTMVSEAIAGLITLGYKM 174 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 QA AV +V + +NI +I+ +L+ + Sbjct: 175 QQARVAVTNVYEHNENI-TLEDLIKKSLQYL 204 >gi|123968451|ref|YP_001009309.1| putative holliday junction DNA helicase RuvA [Prochlorococcus marinus str. AS9601] gi|166230584|sp|A2BQZ1|RUVA_PROMS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|123198561|gb|ABM70202.1| putative holliday junction DNA helicase RuvA [Prochlorococcus marinus str. AS9601] Length = 225 Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 51/218 (23%), Positives = 111/218 (50%), Gaps = 15/218 (6%) Query: 1 MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLGKIG---DFCTLFVETHM 53 MI I G++ L++ +VLI+ QG+ Y I L TL+++ Sbjct: 1 MISWINGDLVDLWQTNQKSFVLINCQGLGYEIQILESFFLKLKTNQISTKNITLWIKHIK 60 Query: 54 RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113 ++D LFGF S + +F+ + S++GVG+++ +G+L++ + +E++ +I Q+ K+I + Sbjct: 61 KEDSDLLFGFTSKDQKNFFIEILSIRGVGSQIGIGILNKFSISEVINAIKTQDKKLICSV 120 Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 PGI K++ R++ ELK K S ++ ++ ++ + + + L +L Y Sbjct: 121 PGIGQKMSERLILELKSKFK--SEILSEEEKSKDEFEIKDPEIIKMIEDLQLTLQSLSYK 178 Query: 174 QDQATTAVVSVLKK------EKNIADDSQIIRLALRAI 205 + T + ++K+ ++N ++++LA+ + Sbjct: 179 NKEINTILPIIIKEIDHLGKKENSLSFEKLLKLAMHYL 216 >gi|315453042|ref|YP_004073312.1| holliday junction ATP-dependent DNA helicase [Helicobacter felis ATCC 49179] gi|315132094|emb|CBY82722.1| holliday junction ATP-dependent DNA helicase [Helicobacter felis ATCC 49179] Length = 181 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 91/205 (44%), Gaps = 25/205 (12%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G++ + + ++V+GV Y + + T S L + G L+ ++ L Sbjct: 1 MIVGLIGHVHSIEPTLIALNVRGVVYGVQVSLHT-SSLLQEGQEVHLYTSLISKEGDQSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL +R F+ L + GVG ++A+ +LS T E + Q++K + ++PG+ K+ Sbjct: 60 FGFLELEERALFVRLIKISGVGPKIALAILSVYTPLEFATLLETQHTKALQKVPGVGSKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+IM +L+G S I A+ AL +LG+ + Sbjct: 120 ASKIMFDLEGYLPS-------------------AHQDPAYIQAVQALESLGFKSLEVQKV 160 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + ++I+ AL+ + Sbjct: 161 CADL-----KGLSTEEMIKEALQKL 180 >gi|308271856|emb|CBX28464.1| Holliday junction ATP-dependent DNA helicase ruvA [uncultured Desulfobacterium sp.] Length = 204 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 50/203 (24%), Positives = 96/203 (47%), Gaps = 13/203 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG--KIGDFCTLFVETHMRQDQI 58 MIG ++G + + +L+ V V Y I P + L +GD TL++ H + Q Sbjct: 1 MIGYLEGKLLKKDSERILLLVNHVGYEILLPAIVMETLNTRSVGDEITLYIYYHQSEKQP 60 Query: 59 R--LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 + L GF ++++++F SV+ +G A+ L+ ++ ++ +I +++ + Q+ GI Sbjct: 61 KPVLIGFNLEVEKEFFQYFISVEDIGPLKAVKALT-MSVRDISRAIESKDAAALKQLKGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN-LGYGQD 175 + A +I+ L+GK + + + + Q + I LV+ LGY Sbjct: 120 GNRTAQKIIATLEGKMNKFALIRKSE-------QTYDSVSEDIGQKVIDLLVSQLGYKPG 172 Query: 176 QATTAVVSVLKKEKNIADDSQII 198 +A T VV LK+ K I ++ Sbjct: 173 EAKTMVVQALKRNKFITSPEDLL 195 >gi|148269895|ref|YP_001244355.1| Holliday junction DNA helicase RuvA [Thermotoga petrophila RKU-1] gi|166231455|sp|A5IKQ6|RUVA_THEP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|147735439|gb|ABQ46779.1| Holliday junction DNA helicase subunit RuvA [Thermotoga petrophila RKU-1] Length = 188 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 100/207 (48%), Gaps = 22/207 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I G + + +L++ GV + I C ++T + + G C L + QD I Sbjct: 1 MIAGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTSEEV-EEGGECFLHTFLSVSQDGIT 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF ++ ++ F+ L V +G + A+ ++S A LV I Q+ + ++++PGIS K Sbjct: 60 LYGFSNERKKELFLSLTKVSRLGPKTALKIISNEDAETLVTMIASQDVEGLSKLPGISKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ ELK + ++ ++ AL++LGY + QA Sbjct: 120 TAERIVMELKD-----------------EFESAGIKDMRIYHESLEALISLGYPEKQARE 162 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV V ++ S++I+ AL+ +S Sbjct: 163 AVKHVYREGMK---TSELIKEALKFLS 186 >gi|123966258|ref|YP_001011339.1| putative holliday junction DNA helicase RuvA [Prochlorococcus marinus str. MIT 9515] gi|123200624|gb|ABM72232.1| putative holliday junction DNA helicase RuvA [Prochlorococcus marinus str. MIT 9515] Length = 228 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 98/221 (44%), Gaps = 18/221 (8%) Query: 1 MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLGKIG---DFCTLFVETHM 53 MI +KG + ++ Y+LI+ QG+ Y I + L L+++ Sbjct: 1 MISWVKGKLVSSWQTNNKFYILINCQGLGYEIQTIESVFNELNSKNVSDKEIILWLKHIK 60 Query: 54 RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113 ++D LFGF + R +F+ + +++G+G+++ + +L++ T +++ +I + K+I+ + Sbjct: 61 KEDSDSLFGFFTKDQRDFFIQILNIKGIGSQIGIALLNKFTLNQIINAISNNDKKLISSV 120 Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 GI K+ RI+ ELK K + ++++ N + S + L +L Y Sbjct: 121 QGIGQKMTDRIILELKSKV--FTQQIEKENLKTNNFLEENKELNSIFEDLELTLQSLNYP 178 Query: 174 QDQATTAVVSVLKKEKNIA---------DDSQIIRLALRAI 205 + ++ K+ +++ A+ + Sbjct: 179 NKKIKNLFPKLINDIKDNKIATLEINSISFESLLKEAMNYL 219 >gi|268679680|ref|YP_003304111.1| Holliday junction DNA helicase RuvA [Sulfurospirillum deleyianum DSM 6946] gi|268617711|gb|ACZ12076.1| Holliday junction DNA helicase RuvA [Sulfurospirillum deleyianum DSM 6946] Length = 186 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 46/206 (22%), Positives = 92/206 (44%), Gaps = 22/206 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I+G + +V + G+ Y ++ + + + + ++ + +L V +R+DQ Sbjct: 1 MIVGIEGIVVKKEVTFVYLKTTSGLSYKVFISLFSSARI-QLNEKISLHVSQIIREDQHS 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF+ + +++ F L + G+G A+ V S ++ + +++ QN ++PGI K Sbjct: 60 LYGFVDENEKKVFDTLVKLNGIGPSTALAVCSTLSPDDFAHALVSQNISAFQKVPGIGPK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL ++ L H S A AL +LG+ ++ Sbjct: 120 SAKRILVELSDFSLQL---------------LHEDFTNSSLQEASMALESLGFKKEMIKK 164 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + + D II+ AL+ + Sbjct: 165 VLSQI-----QGGDTQTIIKEALKKL 185 >gi|148927930|ref|ZP_01811336.1| Holliday junction DNA helicase RuvA [candidate division TM7 genomosp. GTL1] gi|147886719|gb|EDK72283.1| Holliday junction DNA helicase RuvA [candidate division TM7 genomosp. GTL1] Length = 187 Score = 114 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 79/205 (38%), Gaps = 18/205 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + + D ++IDV GV Y + L + + L+ H+R+ L Sbjct: 1 MIAHVVGRLTEKFIDSIIIDVNGVGYEVLVTALEYEEL-ALQEEVKLYTYHHVREQVEEL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++ F LL +VQG+G + A+ +LS + +I +S I + G+ + Sbjct: 60 YGFSSLAGKRLFELLITVQGIGPKAALAILSLGDPEVVRSAIASSDSGFIQRASGVGKRT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ +L K S + Y QA Sbjct: 120 ADRVVVDLADKVGLPSQAGHTPKQAGGDDALDALLALG-------------YNVRQA--- 163 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 VL + + +R AL+ + Sbjct: 164 -TEVLAELDTTLTVEEKVRQALKRM 187 >gi|61657382|emb|CAI44298.1| holliday junction DNA helicase [Thermotoga petrophila] Length = 191 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 100/207 (48%), Gaps = 22/207 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I G + + +L++ GV + I C ++T + + G C L + QD I Sbjct: 4 MIAGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTSEEV-EEGGECFLHTFLSVSQDGIT 62 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF ++ ++ F+ L V +G + A+ ++S A LV I Q+ + ++++PGIS K Sbjct: 63 LYGFSNERKKELFLSLTKVSRLGPKTALKIISNEDAETLVTMIASQDVEGLSKLPGISKK 122 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ ELK + ++ ++ AL++LGY + QA Sbjct: 123 TAERIVMELKD-----------------EFESAGIKDMRIYHESLEALISLGYPEKQARE 165 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV V ++ S++I+ AL+ +S Sbjct: 166 AVKHVYREGMK---TSELIKEALKFLS 189 >gi|332638256|ref|ZP_08417119.1| Holliday junction DNA helicase RuvA [Weissella cibaria KACC 11862] Length = 199 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 44/205 (21%), Positives = 92/205 (44%), Gaps = 7/205 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M + G I + +Y++++V G+ Y + + + + ++VE +R+++ L Sbjct: 1 MYEYLNGVITEVAPNYIVVEVGGIGYRVLV-ANPYAF--PMNELERVYVEQIIRENEQSL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ ++ F L +V G+G + A+ +L+ T LV++I + + + PGI K Sbjct: 58 YGFLTADEKLLFQKLLNVSGIGPKSALAILANADHTGLVQAIADNDITFLTKFPGIGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +L+ K L +++ V E+ + + + T Sbjct: 118 AQQIVLDLQNKLGDLPFNNDIEINLVLPEKQTSDNPELADALLALEALGY--AKKDITR- 174 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V VL KE ++ + LR + Sbjct: 175 VEKVLTKEAQ-MTTAEYVSAGLRLL 198 >gi|225847962|ref|YP_002728125.1| holliday junction DNA helicase RuvA [Sulfurihydrogenibium azorense Az-Fu1] gi|225644479|gb|ACN99529.1| holliday junction DNA helicase RuvA [Sulfurihydrogenibium azorense Az-Fu1] Length = 181 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 48/206 (23%), Positives = 94/206 (45%), Gaps = 28/206 (13%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ IKG I + ++ ++++ G I P K D T++ +++++IR+ Sbjct: 1 MLEFIKGKIVKVDKNKIIVEKDGFGIKINVPDS-----EKFSDEDTVYTILKVKEEEIRV 55 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 GF + +++ F L + GVG + A+ +L + E ++ + + + ++ GI K Sbjct: 56 IGFKTQEEKELFNKLTQIHGVGEKHALAILGHFSIDEFIDILDQSDVDSLTKVQGIGKKT 115 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELKGK S S + + L NLG+ ++Q+ Sbjct: 116 AQRIIVELKGKVD--------------------FSENSLIQDFVKTLTNLGFDKEQSYKV 155 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V +LK++ N I++ A+ +S Sbjct: 156 VRKLLKEDNN---VENILKKAISTLS 178 >gi|56416490|ref|YP_153564.1| holliday junction DNA helicase [Anaplasma marginale str. St. Maries] gi|222474859|ref|YP_002563274.1| Holliday junction DNA helicase (ruvA) [Anaplasma marginale str. Florida] gi|255002828|ref|ZP_05277792.1| Holliday junction DNA helicase (ruvA) [Anaplasma marginale str. Puerto Rico] gi|255003960|ref|ZP_05278761.1| Holliday junction DNA helicase (ruvA) [Anaplasma marginale str. Virginia] gi|269959097|ref|YP_003328886.1| holliday junction DNA helicase motor protein [Anaplasma centrale str. Israel] gi|81359282|sp|Q5PBM0|RUVA_ANAMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|254766938|sp|B9KHQ6|RUVA_ANAMF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|56387722|gb|AAV86309.1| holliday junction DNA helicase [Anaplasma marginale str. St. Maries] gi|222418995|gb|ACM49018.1| Holliday junction DNA helicase (ruvA) [Anaplasma marginale str. Florida] gi|269848928|gb|ACZ49572.1| holliday junction DNA helicase motor protein [Anaplasma centrale str. Israel] Length = 190 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 51/208 (24%), Positives = 97/208 (46%), Gaps = 21/208 (10%) Query: 1 MIGKIKGNIEGL-YEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ-I 58 MIG + G +E + + +++ V GV Y++ P R LS + GD L++ET++ +D Sbjct: 1 MIGTLSGTVEEVVCSNRIILCVGGVGYLVQLPGRVLSG-CQHGDHVRLYIETYVGRDGVS 59 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +L+GF + ++ +L V GV + AM +L +T ++ +I+ ++ + G+ Sbjct: 60 QLYGFANREEQNCMRMLIKVSGVNYKTAMAILDVLTPEQVFSAIVSEDRAALKVG-GVGE 118 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K+ SRI++EL + + + A++AL++LGY + A Sbjct: 119 KLISRIISELTPQVQKFELNRFAATTRTDS-------------EAVAALLSLGYERTAAL 165 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ V +R AL +S Sbjct: 166 GALQKV----GVCDSTEDAVRRALLELS 189 >gi|170288580|ref|YP_001738818.1| Holliday junction DNA helicase RuvA [Thermotoga sp. RQ2] gi|170176083|gb|ACB09135.1| Holliday junction DNA helicase RuvA [Thermotoga sp. RQ2] Length = 188 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 101/207 (48%), Gaps = 22/207 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I G + + +L++ GV + I C ++T + + G C L + QD I Sbjct: 1 MIAGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTSEEV-EEGGECFLHTFLSVSQDGIT 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +++ ++ F+ L V +G + A+ ++S A LV I Q+ + ++++PGIS K Sbjct: 60 LYGFSNEMKKELFLSLTKVSRLGPKTALKIISNEDAETLVAMIASQDVEGLSKLPGISKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ ELK + ++ ++ AL++LGY + QA Sbjct: 120 TAERIVMELKD-----------------EFESAGIKDMRIYHESLEALISLGYPEKQARE 162 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV V ++ S++I+ AL+ +S Sbjct: 163 AVKHVYREGMK---TSELIKEALKFLS 186 >gi|254253224|ref|ZP_04946542.1| DNA recombination protein [Burkholderia dolosa AUO158] gi|124895833|gb|EAY69713.1| DNA recombination protein [Burkholderia dolosa AUO158] Length = 164 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 49/177 (27%), Positives = 89/177 (50%), Gaps = 15/177 (8%) Query: 30 CPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGV 89 P+ T L + G+ L + +R+D L+GFL+ +R F L + G+GAR+A+ V Sbjct: 1 MPMSTFYNLPQTGERVVLLTQQIVREDAHLLYGFLTPQERTTFRELLKITGIGARMALAV 60 Query: 90 LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKE 149 LS ++ EL +++ +Q++ + ++PGI K A R+ ++ + Sbjct: 61 LSGMSVQELAQAVTMQDAARLTRLPGIGKKTAERL-----------LLELKGKLGADLGA 109 Query: 150 QAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 A S A + ++AL+ LGY + +A A+ +V S+ I+LAL+A+S Sbjct: 110 LAGAASPSDHAADILNALLALGYSEKEALAAIKNV----PAGTGVSEGIKLALKALS 162 >gi|154148334|ref|YP_001406161.1| holliday junction DNA helicase RuvA [Campylobacter hominis ATCC BAA-381] gi|166230535|sp|A7I0X0|RUVA_CAMHC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|153804343|gb|ABS51350.1| holliday junction DNA helicase RuvA [Campylobacter hominis ATCC BAA-381] Length = 184 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 53/207 (25%), Positives = 98/207 (47%), Gaps = 24/207 (11%) Query: 1 MIGKIKGNIEGLYEDYVLID-VQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI ++G I + ++ V GV Y I + + + K G+ L +R+D Sbjct: 1 MIVAVEGIITKKEPTFCVLKTVTGVSYGISISLGCSARINK-GEKIELLTAQILREDADL 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL + +++ F +L + G+GA AM V S +++ + +II ++ + +PGI K Sbjct: 60 LYGFLDEKEKRMFEMLIKLNGIGANTAMAVCSSLSSDNFLRAIINGDTATLTTVPGIGPK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL I L++ +Q + I ISAL NLG+ +D+ Sbjct: 120 TARRIIAELSDAKIELANDGEQ-----------------YKIETISALENLGFKRDKINK 162 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 ++ + + +I+ AL+ ++ Sbjct: 163 ILL-----NCKSTNTADLIKEALKKLA 184 >gi|50954747|ref|YP_062035.1| holliday junction DNA helicase [Leifsonia xyli subsp. xyli str. CTCB07] gi|71649473|sp|Q6AFB5|RUVA_LEIXX RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|50951229|gb|AAT88930.1| holliday junction DNA helicase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 207 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 47/192 (24%), Positives = 80/192 (41%), Gaps = 8/192 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + +IDV GV + + L ++GD + +R+D ++L Sbjct: 1 MISSLRGTVLSASGGAAVIDVGGVGFAVQLTPDHARSL-RVGDEAFVHTTLIVREDSLQL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF Q F LL V GVG + A+ VLS ++ ++ +++ + + GI K Sbjct: 60 FGFSGLEQLQVFELLNGVSGVGPKSAISVLSVLSPDQVADAVAAADDAPFRAVSGIGPKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A I+ L GK + + S + + + ALV LG+ + A A Sbjct: 120 AKLIVVSLTGKLAACRRPSAPS-------ARRPSAPSSVSDSVLVALVGLGWPEKVAGEA 172 Query: 181 VVSVLKKEKNIA 192 V V+ Sbjct: 173 VAEVIAGTAESE 184 >gi|61657514|emb|CAI44425.1| holliday junction DNA helicase [Thermotoga sp. RQ2] Length = 191 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 101/207 (48%), Gaps = 22/207 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I G + + +L++ GV + I C ++T + + G C L + QD I Sbjct: 4 MIAGISGRVLKKSGNVLLVETKSGVVFEIVCDVQTSEEV-EEGGECFLHTFLSVSQDGIT 62 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF +++ ++ F+ L V +G + A+ ++S A LV I Q+ + ++++PGIS K Sbjct: 63 LYGFSNEMKKELFLSLTKVSRLGPKTALKIISNEDAETLVAMIASQDVEGLSKLPGISKK 122 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ ELK + ++ ++ AL++LGY + QA Sbjct: 123 TAERIVMELKD-----------------EFESAGIKDMRIYHESLEALISLGYPEKQARE 165 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 AV V ++ S++I+ AL+ +S Sbjct: 166 AVKHVYREGMK---TSELIKEALKFLS 189 >gi|58584509|ref|YP_198082.1| Holliday junction resolvasome, DNA-binding subunit, RuvA [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|75497985|sp|Q5GT34|RUVA_WOLTR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|58418825|gb|AAW70840.1| Holliday junction resolvasome, DNA-binding subunit, RuvA [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 196 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 63/208 (30%), Positives = 110/208 (52%), Gaps = 22/208 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVET--HMRQDQI 58 MIG + G ++ +Y D+++++V V YIIY + L + IG L +ET + R++ Sbjct: 1 MIGNLSGTVDEVYGDHIILNVNDVGYIIYLSAKAL-NVCYIGSKIKLLIETCANNRENTT 59 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +L+GF++ ++ LL V GV + AM +LS++T +L +I+ ++ + +I G+ Sbjct: 60 QLYGFINKEEQSCLRLLVKVSGVSYKTAMSILSKLTPEQLFLAIMNEDKIAL-KISGLGP 118 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K+ +RI+TEL GK L + + + +A+SAL+NLGY + + Sbjct: 119 KLINRIITELSGKVSKL--------------ETNNNNFYPINEDAVSALINLGYEKTKVY 164 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 + KK K D IIR AL+ +S Sbjct: 165 DTI----KKYKPNLDTKDIIRTALKELS 188 >gi|217077241|ref|YP_002334959.1| holliday junction DNA helicase RuvA [Thermosipho africanus TCF52B] gi|226725448|sp|B7IHQ4|RUVA_THEAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|217037096|gb|ACJ75618.1| holliday junction DNA helicase RuvA [Thermosipho africanus TCF52B] Length = 189 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 93/206 (45%), Gaps = 18/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + V ++V + Y I T I ++ + + D I L Sbjct: 1 MIHALNGKVESIENGKVYVNVNDLIYEIIV-GDTGDFEEYINRNVKIYTKMVVNDDGISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + + F L V +G + A+ ++S + +V +II ++ K ++ +PGI K Sbjct: 60 YGFLEVIKLKLFEKLIGVNKLGPKSALKIISSNSVESVVSAIINEDVKALSSLPGIGPKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK L I + AI ALV LG+ ++QA A Sbjct: 120 AERIVLELKDTIKEL--------------DVSINEKDRKVLEAIEALVTLGFNRNQAKKA 165 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V V K+ + D II+ ALR +S Sbjct: 166 VNKVAAKDDKLDD---IIKKALRFLS 188 >gi|284929265|ref|YP_003421787.1| Holliday junction DNA helicase subunit RuvA [cyanobacterium UCYN-A] gi|284809709|gb|ADB95406.1| Holliday junction DNA helicase, RuvA subunit [cyanobacterium UCYN-A] Length = 213 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 45/214 (21%), Positives = 104/214 (48%), Gaps = 13/214 (6%) Query: 1 MIGKIKGNIEGLYEDY-----VLIDVQGVCYIIYCPIRTLSCLGKIG-DFCTLFVETHMR 54 MI KG+ + +D ++++V + Y I + L D+ +F+ R Sbjct: 1 MINYFKGSFVEILKDTKNKIVLIMEVNQIGYEIQITSKLEEKLSNKKSDYIQVFIHLQTR 60 Query: 55 QDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIP 114 +D L+GF++ L+++ F L ++ G+GA++++ +L+ + + +L++++ N K++++ P Sbjct: 61 EDSQILYGFINKLEQELFRQLININGIGAQLSITLLNTLGSEKLIKAVCSGNVKMLSESP 120 Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 G+ K A RI+ EL K + L + + + + + + S+L+ LGY + Sbjct: 121 GVGKKTAERIILELNSKLLKLIEAFEIKVELHSCNSSE-----NTLEDITSSLLLLGYDR 175 Query: 175 DQATTAVVSVLKK--EKNIADDSQIIRLALRAIS 206 + V + + +++R A+ +S Sbjct: 176 EGVDRVTVYLKNNQFLSKQINTEELLRTAITWLS 209 >gi|218780990|ref|YP_002432308.1| DNA recombination protein RuvA domain I [Desulfatibacillum alkenivorans AK-01] gi|254766956|sp|B8FBT7|RUVA_DESAA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|218762374|gb|ACL04840.1| DNA recombination protein RuvA domain I [Desulfatibacillum alkenivorans AK-01] Length = 204 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 47/201 (23%), Positives = 90/201 (44%), Gaps = 11/201 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQDQIR 59 MIG ++G I + ++I GV Y + P + + K GD L++ H + Q + Sbjct: 1 MIGYLEGKILYRQGERIMILAGGVGYEVLLPSVVSASMTKGPGDETGLYIYFHQTEKQPK 60 Query: 60 --LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 L GF S +R++F SV+ +G A+ L I E+ +I ++S + ++ GI Sbjct: 61 PVLIGFNSLEEREFFERFISVEAIGPIKAVSALC-IPIGEIAAAIENKDSGALRKLKGIG 119 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVN-LGYGQDQ 176 + A +I+ L+GK + + + +F + + LVN LG+ + Sbjct: 120 ARTADKIIATLRGKMAVFAGEHGGEPA------GPAPVEENFHLLVLDVLVNQLGHKAAE 173 Query: 177 ATTAVVSVLKKEKNIADDSQI 197 A + +K+ I+ ++ Sbjct: 174 AKELINQAIKRNPAISSPEEL 194 >gi|160934125|ref|ZP_02081512.1| hypothetical protein CLOLEP_02988 [Clostridium leptum DSM 753] gi|156866798|gb|EDO60170.1| hypothetical protein CLOLEP_02988 [Clostridium leptum DSM 753] Length = 168 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 47/175 (26%), Positives = 80/175 (45%), Gaps = 10/175 (5%) Query: 32 IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91 + T L IG L+ ++R+D + LFGF S + F LL SV GVG +V + +LS Sbjct: 1 MNTQRSLPAIGKEAVLYTHMNVREDAVDLFGFSSLAELNCFKLLTSVSGVGPKVGLAILS 60 Query: 92 RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQA 151 ++ ++ ++ + K + G+ K+A R++ ELK K +L + A Sbjct: 61 VLSPEQVAVAVAAGDFKTLTMAQGVGNKLAQRVILELKDKLKALGGGEEV------TAAA 114 Query: 152 HICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 + + A A++AL LGY V ++IRL L+A++ Sbjct: 115 GVVNAAGNAAEAMNALTVLGYTPSDVAPVVAKFDSSLP----VEELIRLTLKAMA 165 >gi|157413283|ref|YP_001484149.1| putative holliday junction DNA helicase RuvA [Prochlorococcus marinus str. MIT 9215] gi|167012662|sp|A8G4N2|RUVA_PROM2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|157387858|gb|ABV50563.1| putative holliday junction DNA helicase RuvA [Prochlorococcus marinus str. MIT 9215] Length = 225 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 51/218 (23%), Positives = 102/218 (46%), Gaps = 15/218 (6%) Query: 1 MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLGK---IGDFCTLFVETHM 53 MI I G + ++ +VLI+ QG+ Y I L TL+++ Sbjct: 1 MISWINGELVETWQTNQKFFVLINCQGLGYEIQILESFFLKLKTNQISNKKITLWIKHIK 60 Query: 54 RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113 ++D LFGF S + +F+ + SV+GVG+++ M +L++ + +E++++I Q+ K+I I Sbjct: 61 KEDSDLLFGFTSKDQKFFFIEILSVRGVGSQIGMSILNKFSISEIIKAIKTQDKKLICSI 120 Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 PGI K++ R++ ELK K S + ++ + + + + L +L Y Sbjct: 121 PGIGQKMSDRLILELKSKFK--SKIQIEEEKGQEEFEITNPEIYKLMEDLQLTLQSLNYK 178 Query: 174 QDQATTAVVSVLKKEK------NIADDSQIIRLALRAI 205 + T + ++K+ ++ LA+ + Sbjct: 179 NKEIKTILPFLIKELGLPTKKEKNLSFENLLNLAMNHL 216 >gi|86152153|ref|ZP_01070365.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni 260.94] gi|315124320|ref|YP_004066324.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85840938|gb|EAQ58188.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni 260.94] gi|315018042|gb|ADT66135.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 183 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 47/206 (22%), Positives = 93/206 (45%), Gaps = 25/206 (12%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 M+ I+G I ++++ G+ Y I+ + + + + + F+ +++D + Sbjct: 1 MVVGIEGIITKKEPTFIIVKCASGLSYGIFISLFCSAKI-QTQEKHEFFITQIIKEDSNK 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GFL +++ F +L V GVGA AM V S + +++ L + V+ ++PGI K Sbjct: 60 FYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDVNSFYKALSLGDESVLKKVPGIGPK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL L +V A++AL+ LG+ Q++ + Sbjct: 120 SAKRIIVELSDTKTKLENV------------------SDDKSEALAALLTLGFKQEKIIS 161 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + S S++I+ AL+ + Sbjct: 162 VLASA-----QATSTSELIKEALKKL 182 >gi|73667297|ref|YP_303313.1| Holliday junction DNA helicase subunit RuvA [Ehrlichia canis str. Jake] gi|90134943|sp|Q3YRE0|RUVA_EHRCJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|72394438|gb|AAZ68715.1| Holliday junction DNA helicase subunit RuvA [Ehrlichia canis str. Jake] Length = 190 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 109/207 (52%), Gaps = 19/207 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ-IR 59 MIG + G IE +Y Y++++V V YI++ R L KIG+ L++ETH+ +D + Sbjct: 1 MIGSLTGIIEEIYITYIILNVGNVGYIVHVSQRVLQT-CKIGNNIKLYIETHVNRDNLTQ 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL ++ + +L ++ G+ + AM +LS+++ ++ +++ N + GI K Sbjct: 60 LYGFLDKQEQDYMRMLITINGINYKTAMSILSKLSPEQIFSAVVSNNKNAF-RGNGIGEK 118 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 +A RI TEL+ K + + ++++AL++LGY + +A Sbjct: 119 LAGRITTELQYKISKMPIEETLIIK---------------EDDSLAALISLGYDKLKAFN 163 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ + N A+ +IIR AL+ +S Sbjct: 164 AIQEIKSDFPN-ANIQEIIRKALQKLS 189 >gi|15639532|ref|NP_218982.1| Holliday junction DNA helicase (ruvA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025771|ref|YP_001933543.1| Holliday junction DNA helicase, subunit A [Treponema pallidum subsp. pallidum SS14] gi|6094206|sp|O83554|RUVA_TREPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560146|sp|B2S3D5|RUVA_TREPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|3322833|gb|AAC65527.1| Holliday junction DNA helicase (ruvA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018346|gb|ACD70964.1| Holliday junction DNA helicase, subunit A [Treponema pallidum subsp. pallidum SS14] gi|291059920|gb|ADD72655.1| Holliday junction DNA helicase RuvA [Treponema pallidum subsp. pallidum str. Chicago] Length = 227 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 49/215 (22%), Positives = 98/215 (45%), Gaps = 9/215 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + + ++V G+ + I + + G++G +F + R+D +RL Sbjct: 1 MFESISGILTLHERERLCVEVHGIEWEIAVSAYSSAAFGEVGSHVKVFTWLYHREDALRL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + +R F+ L V+G+G + A+ VLS I++ L ++ + + +IPGI K Sbjct: 61 FGFSNVQERTLFLSLTKVEGIGPKQALKVLSSISSQALCAALDTGDLCALQRIPGIGKKT 120 Query: 121 ASRIMTELKGKAISLSSV----VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 A R++ LKG + Q D + + ++ALV +GY + Sbjct: 121 AQRMLLALKGTLALTDAASCAQSQTDDRAAHPSNLGCAPHAREIEDLVTALVQMGYDRKM 180 Query: 177 ATTAVVSVLKKEKNI-----ADDSQIIRLALRAIS 206 A + ++ +++ +++ A+ A+S Sbjct: 181 AAEVIAQESAALCSVGRSLYEEEATVLKRAILALS 215 >gi|317051309|ref|YP_004112425.1| Holliday junction DNA helicase RuvA [Desulfurispirillum indicum S5] gi|316946393|gb|ADU65869.1| Holliday junction DNA helicase RuvA [Desulfurispirillum indicum S5] Length = 202 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 51/205 (24%), Positives = 92/205 (44%), Gaps = 8/205 (3%) Query: 1 MIGKIKGNIEGLYEDYV-LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI + G + L +D ++ GV Y + P + L K+ ++ +++D I Sbjct: 1 MISLVSGTVHSLTQDRATILTSGGVGYELSIPASLATSL-KVDQTVSIQTWMGVKEDAIT 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF S ++ F+LL V G+GA++A+ + + +L +I + + I +IPG+ K Sbjct: 60 LYGFSSSEEKALFLLLMKVSGIGAKIALAAVGTLNTQQLGNAIAMGDIATIQRIPGVGKK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 +A +I ELK K S PS +A+ L+ LG +++A + Sbjct: 120 VAEKIALELKDKVTP----AAATSSAPQAFTGTTSGTPSVFADAVQGLIALGLRREEADS 175 Query: 180 AVVSVLKKEKNIADDSQIIRLALRA 204 + ++ IIR LR Sbjct: 176 --AARRAMAAGADSETSIIREVLRQ 198 >gi|150020803|ref|YP_001306157.1| Holliday junction DNA helicase RuvA [Thermosipho melanesiensis BI429] gi|166231454|sp|A6LLH1|RUVA_THEM4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|149793324|gb|ABR30772.1| Holliday junction DNA helicase RuvA [Thermosipho melanesiensis BI429] Length = 189 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 50/206 (24%), Positives = 92/206 (44%), Gaps = 18/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + + ++V + Y I + + +F + + D+I L Sbjct: 1 MIYAMYGVLEDIENGKLYLNVNEIVYEIVVGDTGYFE-DFLNEKIKVFTKMIVNDDEISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF L + F L V +G + A+ +++ + +V +I+ ++ K ++ +PGI K Sbjct: 60 YGFSDVLKLKLFEKLILVNKLGPKSALKIITSSDVSYIVSAIVNEDVKTLSTLPGIGPKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ ELK + + AI ALV LG+ ++Q+ A Sbjct: 120 AERIILELKDSMKEF--------------DVTLTEKDKKILEAIEALVTLGFSRNQSKKA 165 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V +LKK+ II+ AL+ +S Sbjct: 166 VTQILKKDD---SLDDIIKKALKFLS 188 >gi|148243841|ref|YP_001220080.1| DNA recombination protein RuvA [Acidiphilium cryptum JF-5] gi|146400404|gb|ABQ28938.1| Holliday junction DNA helicase subunit RuvA [Acidiphilium cryptum JF-5] Length = 206 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 53/203 (26%), Positives = 93/203 (45%), Gaps = 8/203 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++ G + + +IDV GV Y ++ P TL + T+ ++T M +I L Sbjct: 1 MITQLTGIPRRIGDQECVIDVHGVGYGVHVPSATLDMIEGEAGPVTILIQTRMSDSEISL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + D Q F L VQGVG A+ +LS++ EL +I + K + + GI Sbjct: 61 YGFATPADLQTFRKLVGVQGVGPATALNLLSQLAPEELWRAIREADQKALTAVKGIGPAA 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+++EL+ A L++ + + ++ + A +L LG+ A A Sbjct: 121 AKRLISELESHAAKLAAEMPAPAARLDLGLS--------ADQLAQSLQRLGHAPSAARAA 172 Query: 181 VVSVLKKEKNIADDSQIIRLALR 203 L K + +++ AL+ Sbjct: 173 AQFALNGAKPGDTEQELVARALQ 195 >gi|78779241|ref|YP_397353.1| Holliday junction DNA helicase subunit RuvA [Prochlorococcus marinus str. MIT 9312] gi|123727890|sp|Q31B28|RUVA_PROM9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|78712740|gb|ABB49917.1| Holliday junction DNA helicase subunit RuvA [Prochlorococcus marinus str. MIT 9312] Length = 225 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 50/218 (22%), Positives = 105/218 (48%), Gaps = 15/218 (6%) Query: 1 MIGKIKGNIEGLYED----YVLIDVQGVCYIIYCPIRTLSCLGK---IGDFCTLFVETHM 53 MI I G + L++ ++LI+ QG+ Y I L TL+++ Sbjct: 1 MISWISGELVELWQTNQKFFLLINCQGLGYEIQVLESLFLKLKTNQITNKNITLWIKHIK 60 Query: 54 RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113 ++D LFGF S + +F+ + +++GVG+++ MG+LS+ + +E++ +I QN K+I + Sbjct: 61 KEDSDLLFGFSSKDQKNFFIEILNIRGVGSQIGMGILSKFSISEVINAINTQNKKLICSV 120 Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 PGI K++ R++ ELK K + + Q+ ++ + + L +L Y Sbjct: 121 PGIGQKMSERLILELKSKFRN--ELKIQEEKSKDEFHIKDNKINKIVSDIELTLKSLNYT 178 Query: 174 QDQATTAVVSVLKKEKN------IADDSQIIRLALRAI 205 +++ + + + K+ + ++ LA+ + Sbjct: 179 KNEIKSILPIISKEIDSLTKKEKDTSFENLLMLAMNYL 216 >gi|26553733|ref|NP_757667.1| holliday junction DNA helicase [Mycoplasma penetrans HF-2] gi|38258589|sp|Q8EWC5|RUVA_MYCPE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|26453740|dbj|BAC44071.1| holliday junction DNA helicase [Mycoplasma penetrans HF-2] Length = 219 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 43/213 (20%), Positives = 92/213 (43%), Gaps = 12/213 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ--- 57 MI I G I +Y++++ Y ++ + + +FV T + Q+ Sbjct: 1 MIEYIIGKISYKNNNYLILENNFKGYKLFMSDP---NIFEENSSAKIFVYTKIFQNNKNN 57 Query: 58 --IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPG 115 +GF + ++ +F L +V G+G + ++ +L L E I ++ + ++ + G Sbjct: 58 FLFEYYGFKTLREKIFFENLLTVNGIGPKTSLTILRN-DLNLLKELIRNEDIESLSVLEG 116 Query: 116 ISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 + K A I++ L K + + + S + +SAL LGY ++ Sbjct: 117 FTNKTALSIVSALSYKLKNERISEYNNDVNHSSINQQSNSYNPVP-DLVSALKALGYKKN 175 Query: 176 QATTAVVSVLKKEKNIADD--SQIIRLALRAIS 206 A+ ++ + N+++D S +I A++ IS Sbjct: 176 MIEKAINLLIPQLSNVSEDQISDLISQAIKIIS 208 >gi|148926965|ref|ZP_01810642.1| putative Holliday junction DNA helicase [Campylobacter jejuni subsp. jejuni CG8486] gi|145845049|gb|EDK22146.1| putative Holliday junction DNA helicase [Campylobacter jejuni subsp. jejuni CG8486] Length = 183 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 47/206 (22%), Positives = 93/206 (45%), Gaps = 25/206 (12%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 M+ I+G I ++++ G+ Y I+ + + + + + F+ +++D + Sbjct: 1 MVVGIEGIITKKEPTFIIVKCTSGLSYGIFISLFCSAKI-QTQEKHEFFITQIIKEDSNK 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GFL +++ F +L V GVGA AM V S + +++ L + V+ ++PGI K Sbjct: 60 FYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDVNSFYKALSLGDESVLKKVPGIGPK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL L +V A++AL+ LG+ Q++ + Sbjct: 120 SAKRIIVELSDTKTKLENV------------------SDDKSEALAALLTLGFKQEKIIS 161 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + S S++I+ AL+ + Sbjct: 162 VLASA-----QATGTSELIKEALKKL 182 >gi|87308915|ref|ZP_01091053.1| probable holliday junction DNA helicase ruvA [Blastopirellula marina DSM 3645] gi|87288258|gb|EAQ80154.1| probable holliday junction DNA helicase ruvA [Blastopirellula marina DSM 3645] Length = 208 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 45/207 (21%), Positives = 87/207 (42%), Gaps = 14/207 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGK-IGDFCTLFVETHMRQD--- 56 MI KI G + + E + + V Y + P L +G+ L ++ + Sbjct: 1 MITKITGKVTSVSEAVLTLTVGAFEYEVLIPEFVRRQLQNHLGEEVALHTIEYLEGNPQQ 60 Query: 57 ---QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113 R+ GF ++R++F L SV GVG R A+ + R E+ I Q++K ++ + Sbjct: 61 GRLTPRMIGFSDRIEREFFELFCSVDGVGVRKALRAMVR-PVQEVASLIEEQDTKGLSAL 119 Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 PG+ A RI+ +L+ K + +V + + L +LG+ Sbjct: 120 PGVGPATADRIVAKLRRKVPKFALLVGRSE------LGEDIAPRDVISETFDVLRSLGHS 173 Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRL 200 + A + + L+++K D +++ Sbjct: 174 ESDARRLIDAALEEKKKYKDVETLLQA 200 >gi|241895534|ref|ZP_04782830.1| Holliday junction DNA helicase RuvA [Weissella paramesenteroides ATCC 33313] gi|241871112|gb|EER74863.1| Holliday junction DNA helicase RuvA [Weissella paramesenteroides ATCC 33313] Length = 196 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 10/205 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG I + Y++ID+QGV Y + L T++VE +R + L Sbjct: 1 MYEYLKGTITAILPSYIVIDIQGVGYRVLVANPYAFSL---NSTMTVYVEQIIRDNDQNL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL+ D+ F L +V G+G + A+ +L+ T L+ +I + + + PGI K Sbjct: 58 YGFLTKEDKDLFQKLLNVSGIGPKSALAILANSDHTGLINAITQNDIGFLTKFPGIGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +L+ K L+ + + V +E + + Sbjct: 118 AQQIVLDLQNKLSDLTLSIDDNNVSVQEEATDSELADALLALEALGYA-----KKDIKRV 172 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + K+ + + LR + Sbjct: 173 EKELTKQ--TNLTTAAYVSSGLRLL 195 >gi|57237644|ref|YP_178892.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni RM1221] gi|86153371|ref|ZP_01071575.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni HB93-13] gi|121613230|ref|YP_001000488.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni 81-176] gi|157415070|ref|YP_001482326.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni 81116] gi|205356769|ref|ZP_03223528.1| putative Holliday junction DNA helicase [Campylobacter jejuni subsp. jejuni CG8421] gi|73621848|sp|Q5HUZ3|RUVA_CAMJR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|166230537|sp|A1VZE7|RUVA_CAMJJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|172047113|sp|A8FLL2|RUVA_CAMJ8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|57166448|gb|AAW35227.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni RM1221] gi|85843097|gb|EAQ60308.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni HB93-13] gi|87249483|gb|EAQ72443.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni 81-176] gi|157386034|gb|ABV52349.1| holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni 81116] gi|205345336|gb|EDZ31980.1| putative Holliday junction DNA helicase [Campylobacter jejuni subsp. jejuni CG8421] gi|307747711|gb|ADN90981.1| Holliday junction ATP-dependent DNA helicase ruvA [Campylobacter jejuni subsp. jejuni M1] gi|315058253|gb|ADT72582.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni S3] gi|315931217|gb|EFV10189.1| holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni 327] Length = 183 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 47/206 (22%), Positives = 93/206 (45%), Gaps = 25/206 (12%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 M+ I+G I ++++ G+ Y I+ + + + + + F+ +++D + Sbjct: 1 MVVGIEGIITKKEPTFIIVKCASGLSYGIFISLFCSAKI-QTQEKHEFFITQIIKEDSNK 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GFL +++ F +L V GVGA AM V S + +++ L + V+ ++PGI K Sbjct: 60 FYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDVNSFYKALSLGDESVLKKVPGIGPK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL L +V A++AL+ LG+ Q++ + Sbjct: 120 SAKRIIVELSDTKTKLENV------------------SDDKSEALAALLTLGFKQEKIIS 161 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + S S++I+ AL+ + Sbjct: 162 VLASA-----QATGTSELIKEALKKL 182 >gi|312622645|ref|YP_004024258.1| holliday junction DNA helicase ruva [Caldicellulosiruptor kronotskyensis 2002] gi|312203112|gb|ADQ46439.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor kronotskyensis 2002] Length = 197 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 55/208 (26%), Positives = 97/208 (46%), Gaps = 15/208 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD--QI 58 MI I G I+ ++ +YV+++ + I+C S +G ++V ++ ++ Sbjct: 1 MIDSIVGTIQEVFNNYVILNYNNIYIKIFCNSTKFSEF--LGKEKRVYVSLKFNENLSEL 58 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +GFL+ +R+ F+ LQ V GVG+++A+ +LS I EL+ I N + ++ GI Sbjct: 59 ECYGFLTREERELFLKLQKVTGVGSKLALQILSSIDFQELIVEIAKGNVARLEKVKGIGK 118 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K ASRI+ ELK V N + AL++LGY D+ Sbjct: 119 KTASRIILELKETLKKEFKVATTAGKGENNYEK--------LEEISLALLSLGYDIDEVY 170 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 + S ++ + I+LAL+ +S Sbjct: 171 QVLSS---EDFSELSLEDGIKLALKKLS 195 >gi|153952036|ref|YP_001398280.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. doylei 269.97] gi|166230536|sp|A7H450|RUVA_CAMJD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|152939482|gb|ABS44223.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. doylei 269.97] Length = 183 Score = 110 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 47/206 (22%), Positives = 93/206 (45%), Gaps = 25/206 (12%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 M+ I+G I ++++ G+ Y I+ + + + + + F+ +++D + Sbjct: 1 MVVGIEGIITKKEPTFIIVKCASGLSYGIFISLFCSAKI-QTQEKHEFFITQIIKEDSNK 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GFL +++ F +L V GVGA AM V S + +++ L + V+ ++PGI K Sbjct: 60 FYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDINSFYKALSLGDESVLKKVPGIGPK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL L +V A++AL+ LG+ Q++ + Sbjct: 120 SAKRIIVELSDTRTKLENV------------------SDDKSEALAALLTLGFKQEKIIS 161 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + S S++I+ AL+ + Sbjct: 162 VLASA-----QATGTSELIKEALKKL 182 >gi|86150190|ref|ZP_01068417.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597606|ref|ZP_01100840.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni 84-25] gi|218562427|ref|YP_002344206.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|20455273|sp|Q9PPC1|RUVA_CAMJE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|85839306|gb|EAQ56568.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190198|gb|EAQ94173.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni 84-25] gi|112360133|emb|CAL34927.1| putative Holliday junction ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926045|gb|ADC28397.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni IA3902] gi|315928270|gb|EFV07586.1| holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315929355|gb|EFV08561.1| holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni 305] Length = 183 Score = 110 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 48/206 (23%), Positives = 94/206 (45%), Gaps = 25/206 (12%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 M+ I+G I ++++ G+ Y I+ + + + + + F+ +++D + Sbjct: 1 MVVGIEGIITKKEPTFIIVKCASGLSYGIFISLFCSAKI-QTQEKHEFFITQIIKEDSNK 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GFL +++ F +L V GVGA AM V S + +++ L + V+ ++PGI K Sbjct: 60 FYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDVNSFYKALSLGDESVLKKVPGIGPK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL L +V A++AL+ LG+ Q++ + Sbjct: 120 SAKRIIVELSDTKTKLENV------------------SDDKSEALAALLTLGFKQEKIIS 161 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 +VS S++I+ AL+ + Sbjct: 162 VLVSA-----QATGTSELIKEALKKL 182 >gi|283957218|ref|ZP_06374680.1| putative Holliday junction ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni 1336] gi|283791290|gb|EFC30097.1| putative Holliday junction ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni 1336] Length = 183 Score = 110 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 47/206 (22%), Positives = 93/206 (45%), Gaps = 25/206 (12%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 M+ I+G I ++++ G+ Y I+ + + + + + F+ +++D + Sbjct: 1 MVVGIEGIITKKEPTFIIVKCASGLSYGIFISLFCSAKI-QTQEKHEFFITQIIKEDSNK 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GFL +++ F +L V GVGA AM V S + +++ L + V+ ++PGI K Sbjct: 60 FYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDVNSFYKALSLGDESVLKKVPGIGPK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL L +V A++AL+ LG+ Q++ + Sbjct: 120 SAKRIIVELSDTKTKLENV------------------SDDKSEALTALLTLGFKQEKIIS 161 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + S S++I+ AL+ + Sbjct: 162 VLASA-----QATGTSELIKEALKKL 182 >gi|229820484|ref|YP_002882010.1| Holliday junction DNA helicase RuvA [Beutenbergia cavernae DSM 12333] gi|259495635|sp|C5C5Q7|RUVA_BEUC1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229566397|gb|ACQ80248.1| Holliday junction DNA helicase RuvA [Beutenbergia cavernae DSM 12333] Length = 200 Score = 110 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 100/207 (48%), Gaps = 13/207 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D V++ V GV + TL+ L ++ C L +R+D + L Sbjct: 1 MIALVQGRVAAIGLDAVVVVVGGVGMRVLATPATLAGL-RVEADCELHTSLVVREDSLTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF +R F L+Q+V GVG R+A+ +L+ T L ++ ++ + ++PGI K Sbjct: 60 FGFADADERDVFELVQTVSGVGPRLALAMLAVHTPDGLRRAVAQEDLAALVRVPGIGRKG 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 ASRI+ EL + V+ + + ALV LG+ QA A Sbjct: 120 ASRIVLELGDRLGPAQGAAPAAPVAVDDGA-----------DVVDALVGLGWPVRQAQDA 168 Query: 181 VVSVLKKEKNIA-DDSQIIRLALRAIS 206 V VL+ A D + ++R ALR+++ Sbjct: 169 VRGVLEDADGTAPDAAGLLRAALRSLA 195 >gi|297518838|ref|ZP_06937224.1| Holliday junction DNA helicase RuvA [Escherichia coli OP50] Length = 101 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 51/98 (52%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G I VLI+V GV Y + P+ L + G +F +R+D L Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVLMPMTCFYELPEAGQEAIVFTHFVVREDAQLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATEL 98 +GF + +R F L GVG ++A+ +LS ++A + Sbjct: 61 YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQF 98 >gi|312127829|ref|YP_003992703.1| holliday junction DNA helicase ruva [Caldicellulosiruptor hydrothermalis 108] gi|311777848|gb|ADQ07334.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor hydrothermalis 108] Length = 197 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 55/208 (26%), Positives = 95/208 (45%), Gaps = 15/208 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD--QI 58 MI I G I+ ++ +YV+++ + I+C S +G ++V ++ +I Sbjct: 1 MIDSIVGTIQEVFNNYVILNYNNIYIKIFCNGTKFSEF--LGKEKRVYVSLKFNENLSEI 58 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +GFL+ +R+ F+ LQ V GVG+++A+ +LS I EL+ I N + ++ GI Sbjct: 59 ECYGFLTREERELFLKLQKVTGVGSKLALQILSSIDFQELIVEIAKGNVARLEKVKGIGK 118 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K ASRI+ ELK V AL++LGY D+ Sbjct: 119 KTASRIILELKETLKK--------EFKVGSTSGKEEKTYEKLEEISLALLSLGYDIDEVN 170 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 + S ++ + I+LAL+ +S Sbjct: 171 QVLSS---EDFSELSLEDGIKLALKKLS 195 >gi|146296577|ref|YP_001180348.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor saccharolyticus DSM 8903] gi|166230531|sp|A4XJS2|RUVA_CALS8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|145410153|gb|ABP67157.1| Holliday junction DNA helicase subunit RuvA [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 197 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 53/208 (25%), Positives = 97/208 (46%), Gaps = 15/208 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD--QI 58 MI I G I+ ++ +YV+++ + I+C S +G ++V ++ ++ Sbjct: 1 MIDSIVGTIQEVFNNYVILNYNNIYIKIFCNSTKFSEF--LGKEKRVYVSLKFNENLSEL 58 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +GFL+ +R+ F+ LQ V GVG+++A+ +LS I +L+ I N + ++ GI Sbjct: 59 ECYGFLTREERELFLKLQKVTGVGSKLALQILSSIDYQQLIVEIAKGNVARLEKVKGIGK 118 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K ASRI+ ELK V + + AL++LGY D+ Sbjct: 119 KTASRIILELKETLKKEFKVASTSGTEEKTYEK--------LEEISLALLSLGYEIDEIN 170 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 + S ++ + I+LAL+ +S Sbjct: 171 QVLSS---EDFSELSLEDGIKLALKKLS 195 >gi|157364836|ref|YP_001471603.1| RuvA domain-containing protein [Thermotoga lettingae TMO] gi|157315440|gb|ABV34539.1| RuvA domain protein [Thermotoga lettingae TMO] Length = 186 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 57/202 (28%), Positives = 94/202 (46%), Gaps = 21/202 (10%) Query: 5 IKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFL 64 +KG + V++++ G I C I TL +IG L Q+ I ++GFL Sbjct: 3 VKGTVHSKNGSSVILEINGFLIKILCDIETLEK-AQIGQTVQLHTHLEFSQEGITIYGFL 61 Query: 65 SDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRI 124 S F + V +G + A+ ++S ELV II Q+ + +++ PGI K A R+ Sbjct: 62 SKERLYVFEKILKVSKIGPKTALRIVSTSEPEELVHLIISQDVEKLSRFPGIGKKTAERL 121 Query: 125 MTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV 184 + ELK + + S +++S +AI ALV LG+G+ ++ A SV Sbjct: 122 IAELKDEEFEIKSDYSKELS-----------------DAIDALVALGFGKIESREAAKSV 164 Query: 185 LKKEKNIADDSQIIRLALRAIS 206 K QI++ AL+ +S Sbjct: 165 YHSSKKA---EQIVKEALKMLS 183 >gi|167847253|ref|ZP_02472761.1| Holliday junction DNA helicase motor protein [Burkholderia pseudomallei B7210] Length = 162 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 50/175 (28%), Positives = 87/175 (49%), Gaps = 15/175 (8%) Query: 32 IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91 + T L G+ L + +R+D L+GFL+ +R F L + GVGAR+A+ VLS Sbjct: 1 MSTFYNLPHTGEKVVLLTQLIVREDAHLLYGFLTPPERSTFRELLKITGVGARMALAVLS 60 Query: 92 RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQA 151 ++ EL +++ LQ++ + ++PGI K A R+ ++ + A Sbjct: 61 GMSVAELSQAVTLQDAARLTRVPGIGKKTAERL-----------LLELKGKLGADLGPLA 109 Query: 152 HICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 S A + ++ALV LGY + +A A+ +V S+ I+L+L+A+S Sbjct: 110 GAASPSDHATDILNALVALGYSEKEALAAIKNV----PAGTGVSEGIKLSLKALS 160 >gi|290890055|ref|ZP_06553138.1| hypothetical protein AWRIB429_0528 [Oenococcus oeni AWRIB429] gi|290480246|gb|EFD88887.1| hypothetical protein AWRIB429_0528 [Oenococcus oeni AWRIB429] Length = 178 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 44/187 (23%), Positives = 83/187 (44%), Gaps = 13/187 (6%) Query: 19 IDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSV 78 IDV G+ + ++ P D T+F E +R +QI L+GF + +R F L +V Sbjct: 3 IDVNGIGFRVFTPNPYEYNQ---NDQTTIFTEQIVRDNQISLYGFKTVKERNLFQKLLNV 59 Query: 79 QGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSV 138 G+G + A+ +++ L+ ++ K + + PGI K A +I+ +LKGK S Sbjct: 60 SGIGPKSALAIIAGGDRDGLIAAVENGKPKYLTKFPGIGNKTAQQIVLDLKGKLGDFSKN 119 Query: 139 VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQII 198 + ++ + +A++ALV LG+ + + L + I Sbjct: 120 IAP--------MKNLLENSAELDDALAALVALGFSSKEVNK-INPKLASLGEL-TTDAYI 169 Query: 199 RLALRAI 205 + L+ + Sbjct: 170 QKGLKLL 176 >gi|33240204|ref|NP_875146.1| Holliday junction resolvasome DNA-binding subunit [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|44888420|sp|Q7VCI6|RUVA_PROMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|33237731|gb|AAP99798.1| Holliday junction resolvasome DNA-binding subunit [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 222 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 55/219 (25%), Positives = 92/219 (42%), Gaps = 22/219 (10%) Query: 1 MIGKIKGNIEGLYEDY----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD 56 MI + G ++E+ VLI GV Y + R+L L + L+V R+D Sbjct: 1 MISWLNGLKIEIWENGTRKGVLISCSGVGYEVQLLSRSLQLLNTSKELI-LWVHEVHRED 59 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 +L GFL+ L+R F L SV GVG ++A+ +L + A +L+ +I + + PG+ Sbjct: 60 GSQLIGFLNKLERDLFRKLISVSGVGPQLAISLLEKNPAEQLISAITKKKIAQLTSCPGV 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 K A R++ EL+ K L + + + + A S L+NL Y + Sbjct: 120 GKKTAERLVIELQNKLSDLIGSSLKKTNNH----LELEYETNVADEVRSTLLNLDYKNSE 175 Query: 177 ATTAVVSVLKKEKNI-------------ADDSQIIRLAL 202 A + K+I D +++ L Sbjct: 176 IEKAFLEFETSSKSIRSKAQESFEVSKGLDFETLLKETL 214 >gi|251771977|gb|EES52549.1| probable holliday junction DNA helicase (RuvA) [Leptospirillum ferrodiazotrophum] Length = 211 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 38/202 (18%), Positives = 79/202 (39%), Gaps = 6/202 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ--DQI 58 MI ++ G IE D+V++ V Y + +S L +L + + Sbjct: 1 MIARLFGTIEETGSDWVILRAGAVGYRVLLSPYAMSQLSAREKEISLRTFLLWGEHQETP 60 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L GFL + + F ++ + G+G A+ ++S + E+I + + ++ G+ Sbjct: 61 LLVGFLDAAEEELFHEIRRIGGLGPTKAIRMISLPPGS-FWEAIASGDVGRLRKLKGVGE 119 Query: 119 KIASRIMTELKGKAISLSSVVQQD--MSCVNKEQAHICSMPSFAINAISALVN-LGYGQD 175 A ++++EL+ + SL S D S + S LV G+ Sbjct: 120 TTAKKLVSELRDRVPSLISASPADSLSSGGSPLPEGPLSPRGAVAAVREVLVAQFGHSPS 179 Query: 176 QATTAVVSVLKKEKNIADDSQI 197 +A + L + + + ++ Sbjct: 180 EADAMIRRALSRNPSARTEEEL 201 >gi|194246569|ref|YP_002004208.1| Holliday junction resolvasome, DNA-binding subunit [Candidatus Phytoplasma mali] gi|254767381|sp|B3R0J1|RUVA_PHYMT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|193806926|emb|CAP18355.1| Holliday junction resolvasome, DNA-binding subunit [Candidatus Phytoplasma mali] Length = 186 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 36/206 (17%), Positives = 84/206 (40%), Gaps = 23/206 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + +++V++D + Y I +I FV H++++ L Sbjct: 1 MYSYIKGKVVNNGQNFVIVDNNNIGYHIIVSNPYFY---EINKEYKFFVHFHIKENLQIL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + +F L V +G + A+ + ++ ++I ++ + + PGI +K Sbjct: 58 YGFNDNKNLLFFKKLLDVPTIGPKSALMLSETDNLEQVFQAIENNDNVYLRKFPGIGIKS 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ +LKG I + + L+NLG+ + + + Sbjct: 118 AQQIILKLKGDLI----------------FSEKIILNPKKTELEKILLNLGFVKKEIKSV 161 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + + +++ L ++ Sbjct: 162 LNQI----DDKKELELMLKEVLLKLA 183 >gi|32473207|ref|NP_866201.1| holliday junction DNA helicase ruvA [Rhodopirellula baltica SH 1] gi|81661574|sp|Q7USB0|RUVA_RHOBA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|32397886|emb|CAD73887.1| probable holliday junction DNA helicase ruvA [Rhodopirellula baltica SH 1] gi|327540460|gb|EGF27045.1| holliday junction DNA helicase ruvA [Rhodopirellula baltica WH47] Length = 207 Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 85/205 (41%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQI- 58 MI I G + + E V+I Y +Y T L +IG+ L ++ + Sbjct: 1 MIVSIAGKLVQVGEISVIIQAAPFDYEVYVGDYTRRQLQNQIGNEVRLHTLDYIEGNAQG 60 Query: 59 -----RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113 RL GF + +RQ+F L SV GVG + A+ + R EL I Q++K ++ + Sbjct: 61 GRLTPRLIGFSTLPERQFFDLFCSVDGVGVKKALRAMVR-PVKELAVLIEEQDAKTLSAL 119 Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 PGI + +++ +L+ K + +V + + + ALV LG+ Sbjct: 120 PGIGPATSEKVIAKLRRKMPRFALMV-----AGGEVADAMEVESPIVSDTYDALVTLGHS 174 Query: 174 QDQATTAVVSVLKKEKNIADDSQII 198 + A + L K D ++ Sbjct: 175 ESDARKLIDETLATGKKFKDTESLL 199 >gi|254246308|ref|ZP_04939629.1| DNA recombination protein, RuvA [Burkholderia cenocepacia PC184] gi|124871084|gb|EAY62800.1| DNA recombination protein, RuvA [Burkholderia cenocepacia PC184] Length = 164 Score = 109 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 48/177 (27%), Positives = 88/177 (49%), Gaps = 15/177 (8%) Query: 30 CPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGV 89 P+ T L + G+ L + +R+D L+GFL+ +R F L + G+GAR+A+ V Sbjct: 1 MPMSTFYNLPQTGERVVLLTQQIVREDAHLLYGFLTPQERTTFRELLKITGIGARMALAV 60 Query: 90 LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKE 149 LS ++ EL +++ +Q++ + ++PGI K A R+ ++ + Sbjct: 61 LSGMSVQELAQAVTMQDAARLTRLPGIGKKTAERL-----------LLELKGKLGADLGA 109 Query: 150 QAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 A S A + ++AL+ LGY + + A+ +V S+ I+LAL+A+S Sbjct: 110 LAGAASASDHATDILNALLALGYSEKEGLAAIKNV----PAGTGVSEGIKLALKALS 162 >gi|224370135|ref|YP_002604299.1| RuvA [Desulfobacterium autotrophicum HRM2] gi|259495639|sp|C0QKP5|RUVA_DESAH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|223692852|gb|ACN16135.1| RuvA [Desulfobacterium autotrophicum HRM2] Length = 214 Score = 109 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 45/204 (22%), Positives = 79/204 (38%), Gaps = 8/204 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCP----IRTLSCLGKIGDFCTLFVETHMRQD 56 MIG ++G + L D VL+ V V Y I P + L ++ RQ Sbjct: 1 MIGFLQGKVLNLEADNVLLLVNQVGYEILLPATVVASVQNKLSDEFLNLYIYYHQTDRQP 60 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 + L GF S ++ +F L +V +G A + + + + +I ++ +A + GI Sbjct: 61 KPVLIGFDSAEEKDFFQLFITVDAIGPLKAAKAME-HSVSTIARAIENKDVAFLATLKGI 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP--SFAINAISALV-NLGYG 173 + A +I+ L GKA + + + S+P + LV LG+ Sbjct: 120 GRRTAQKIVAALHGKAGRFLLAADEAGAGDGVSKTGTPSLPIQKAIDQVVDVLVQQLGHT 179 Query: 174 QDQATTAVVSVLKKEKNIADDSQI 197 A V L ++ I + Sbjct: 180 PSAAKMMVAQALDRDPEIMTPEAL 203 >gi|312793294|ref|YP_004026217.1| holliday junction DNA helicase ruva [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180434|gb|ADQ40604.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor kristjanssonii 177R1B] Length = 197 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 55/208 (26%), Positives = 96/208 (46%), Gaps = 15/208 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD--QI 58 MI I G I+ ++ +YV+++ V I+C S +G ++V ++ ++ Sbjct: 1 MIDSIVGIIQEVFSNYVILNYNNVYIKIFCNGTKFSEF--LGKEKKVYVSLKFNENLSEL 58 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +GFL+ +R+ F+ LQ V GVG+++A+ +LS I EL+ I N + ++ GI Sbjct: 59 ECYGFLTREERELFLKLQKVTGVGSKLALQILSSIDFQELIVEIAKGNVARLEKVKGIGK 118 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K ASRI+ ELK V + AL++LGY D+ Sbjct: 119 KTASRIILELKETLKKEFKVAATTGKEEKTYEK--------LEEISLALLSLGYDIDEVN 170 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 + S ++ + I+LAL+ +S Sbjct: 171 QVLSS---EDFSELSLEDGIKLALKKLS 195 >gi|239618103|ref|YP_002941425.1| RuvA domain protein [Kosmotoga olearia TBF 19.5.1] gi|259495648|sp|C5CFS3|RUVA_KOSOT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|239506934|gb|ACR80421.1| RuvA domain protein [Kosmotoga olearia TBF 19.5.1] Length = 195 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 43/206 (20%), Positives = 89/206 (43%), Gaps = 14/206 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G I + + V + I C T+ L L + + Sbjct: 1 MIKGVEGEITEISGNEVTLKAGQFYLNILCSTNTIKELSLSAKVHLLTYLSFSADRAPEI 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + F++L +G ++A+ +LS + L + I ++ ++++PG+ K Sbjct: 61 YGFKDRAEYNVFLMLLKANKIGPKMALKILSATSPEMLQKMIASKDISGLSRLPGLGKKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+++EL + +++S + +A+ AL LG+ A A Sbjct: 121 AERLVSELYDLVKDYAVEFPKELS-------------DVSEDAVGALTALGFDMTSAKLA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 V VLK++ + + +++R ALR ++ Sbjct: 168 VNEVLKEQ-TVENTQELVRKALRKLN 192 >gi|225851116|ref|YP_002731350.1| holliday junction DNA helicase RuvA [Persephonella marina EX-H1] gi|225645836|gb|ACO04022.1| holliday junction DNA helicase RuvA [Persephonella marina EX-H1] Length = 179 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 47/206 (22%), Positives = 89/206 (43%), Gaps = 30/206 (14%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG I+ +D +ID+ V P + D +F+E ++ D++ L Sbjct: 1 MIEFLKGKIKHKKDDIYIIDLGTVALRFRSPS-------DLKDQSVVFIEMFIKDDRVEL 53 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F L S+ GVG + A+ +L + E + ++ + G+ K Sbjct: 54 YGFKTPEEREIFNRLLSINGVGVKHALSILRSFSPERFFEIVENRDITTLTTAQGVGKKT 113 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ EL+GK + + + AL LG+ + + + Sbjct: 114 AQRIVLELQGKLDFI--------------------ENELLKDLVDALTGLGFDKKRVLSV 153 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 VLK+ N + ++LAL+ ++ Sbjct: 154 AKDVLKETDN---LEKALKLALQKLA 176 >gi|312877191|ref|ZP_07737160.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor lactoaceticus 6A] gi|311796000|gb|EFR12360.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor lactoaceticus 6A] Length = 197 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 56/208 (26%), Positives = 97/208 (46%), Gaps = 15/208 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD--QI 58 MI I G I+ ++ +YV+I+ + I+C S +G ++V ++ ++ Sbjct: 1 MIDSIVGIIQEVFSNYVIINYNNIYIKIFCNGTKFSEF--LGKEKKVYVSLKFNENLSEL 58 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +GFL+ +R+ F+ LQ V GVG+++A+ +LS I EL+ I N + ++ GI Sbjct: 59 ECYGFLTREERELFLKLQKVTGVGSKLALQILSSIDFQELIVEIAKGNVARLEKVKGIGK 118 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K ASRI+ ELK VV + AL++LGY D+ Sbjct: 119 KTASRIILELKETLKKEFKVVATTGKEEKTYEK--------LEEISLALLSLGYDIDEVN 170 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 + S ++ + I+LAL+ +S Sbjct: 171 QVLSS---EDFSELSLEDGIKLALKKLS 195 >gi|300692490|ref|YP_003753485.1| subunit A of RuvABC Holliday junction resolvasome, regulatory subunit [Ralstonia solanacearum PSI07] gi|299079550|emb|CBJ52228.2| subunit A of RuvABC Holliday junction resolvasome, regulatory subunit [Ralstonia solanacearum PSI07] Length = 162 Score = 108 bits (269), Expect = 6e-22, Method: Composition-based stats. Identities = 54/175 (30%), Positives = 90/175 (51%), Gaps = 15/175 (8%) Query: 32 IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91 + T L G+ L + +R+D L+GF + +R+ F L + G+GAR+A+ VLS Sbjct: 1 MSTFYNLPATGEKVVLLTQQIVREDAHLLYGFGTAAERETFRQLIKISGIGARIALAVLS 60 Query: 92 RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQA 151 ++ EL +++ LQ + + +IPGI K A R++ ELKGK + V + Sbjct: 61 GMSVAELAQAVTLQEAGRLTRIPGIGKKTAERLLLELKGKLGADLGAVPGGPA------- 113 Query: 152 HICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 M A++ ++AL+ LGY +A A+ V S+ I+LAL+A+S Sbjct: 114 ----MSDDAVDVLNALLALGYSDKEAALAIKQV----PTGTGVSEGIKLALKALS 160 >gi|315645785|ref|ZP_07898906.1| Holliday junction DNA helicase RuvA [Paenibacillus vortex V453] gi|315278546|gb|EFU41860.1| Holliday junction DNA helicase RuvA [Paenibacillus vortex V453] Length = 178 Score = 108 bits (269), Expect = 6e-22, Method: Composition-based stats. Identities = 43/177 (24%), Positives = 75/177 (42%), Gaps = 3/177 (1%) Query: 29 YCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMG 88 +CP K T++ H+R D I LFGF S +++ F L V G+G RVA+G Sbjct: 2 FCPNP--YAFAKTEGTVTVYTHHHVRDDAILLFGFPSREEQKLFRKLIEVSGIGPRVALG 59 Query: 89 VLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNK 148 +L + +V +I +N + ++PGI K A R++ +LK K Sbjct: 60 ILGGGSPDHVVSAIYQENVSFLVKLPGIGKKTAQRMILDLKDKLEGF-GNATMMTGLFAI 118 Query: 149 EQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 ++ + S A L LGY + + + + +++ AL+ + Sbjct: 119 QEPEAENDGSAWSEAREGLKALGYTDSELDKVWLKIKDSGASGESVDVLMKRALQQL 175 >gi|256852230|ref|ZP_05557616.1| Holliday junction DNA helicase RuvA [Lactobacillus jensenii 27-2-CHN] gi|260661738|ref|ZP_05862649.1| Holliday junction DNA helicase RuvA [Lactobacillus jensenii 115-3-CHN] gi|282932642|ref|ZP_06338056.1| holliday junction DNA helicase RuvA [Lactobacillus jensenii 208-1] gi|297205604|ref|ZP_06923000.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus jensenii JV-V16] gi|256615276|gb|EEU20467.1| Holliday junction DNA helicase RuvA [Lactobacillus jensenii 27-2-CHN] gi|260547485|gb|EEX23464.1| Holliday junction DNA helicase RuvA [Lactobacillus jensenii 115-3-CHN] gi|281303216|gb|EFA95404.1| holliday junction DNA helicase RuvA [Lactobacillus jensenii 208-1] gi|297150182|gb|EFH30479.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus jensenii JV-V16] Length = 193 Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 52/201 (25%), Positives = 96/201 (47%), Gaps = 16/201 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G + + ++ +DV G + I+ + S G ++VE +R + I L Sbjct: 1 MYEYLEGTVTIITPSFIALDVGGQGFKIF-SAKPYSY--SEGQRIRVYVEQVVRDNDISL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++Q F+ L SV G+G + AM +++ ++ L ++I + + PG+ K Sbjct: 58 YGFESSDEKQLFLKLLSVSGIGPKSAMAIMAAESSDSLAKAIENGEVNYLTKFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK L S V+QD+ + +A+ AL LGY + + Sbjct: 118 ASQIVLDLKGK---LGSYVEQDLFTADT--------SQALSDALLALSALGYTKKEVEKV 166 Query: 181 VVSVLKKEKNIADDSQIIRLA 201 + K + AD + I+ Sbjct: 167 KPKLEKSSFDTAD--EYIKEG 185 >gi|116494312|ref|YP_806046.1| Holliday junction DNA helicase RuvA [Lactobacillus casei ATCC 334] gi|191637648|ref|YP_001986814.1| Holliday junction DNA helicase RuvA [Lactobacillus casei BL23] gi|239629698|ref|ZP_04672729.1| holliday junction resolvasome, DNA-binding subunit [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301065824|ref|YP_003787847.1| holliday junction resolvasome, DNA-binding subunit [Lactobacillus casei str. Zhang] gi|122264259|sp|Q03B18|RUVA_LACC3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|229560092|sp|B3WC55|RUVA_LACCB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|116104462|gb|ABJ69604.1| Holliday junction DNA helicase subunit RuvA [Lactobacillus casei ATCC 334] gi|190711950|emb|CAQ65956.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus casei BL23] gi|239528384|gb|EEQ67385.1| holliday junction resolvasome, DNA-binding subunit [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438231|gb|ADK17997.1| Holliday junction resolvasome, DNA-binding subunit [Lactobacillus casei str. Zhang] gi|327381703|gb|AEA53179.1| Holliday junction DNA helicase RuvA [Lactobacillus casei LC2W] gi|327384869|gb|AEA56343.1| Holliday junction DNA helicase RuvA [Lactobacillus casei BD-II] Length = 198 Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 46/206 (22%), Positives = 93/206 (45%), Gaps = 11/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G I+ + Y++IDV G+ + + + G+ ++V+ +R + L Sbjct: 1 MYEYFEGIIQAVTPAYIVIDVHGIGFRLLV-ANPYHF--EAGEQKRVYVQLIIRDNDQTL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D++ F L +V G+G + A+ +L+ +++ L +I + K + + PGI K Sbjct: 58 YGFEGAADKRTFNQLLTVTGIGPKSALAILANVSSGGLATAIAQDDVKFLTKFPGIGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A++I+ +LKGK + ++ V + + A+ A+ GY Q Sbjct: 118 AAQIILDLKGKITTDGQPAAAAIAPVASDVDSELADALAALVAL------GYPQRTVDGL 171 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 ++ K + +R LR +S Sbjct: 172 TDTL--KAFSAKTTDAYLREGLRLLS 195 >gi|283954372|ref|ZP_06371893.1| holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni 414] gi|283794171|gb|EFC32919.1| holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni 414] Length = 183 Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 48/206 (23%), Positives = 94/206 (45%), Gaps = 25/206 (12%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 M+ I+G I ++++ G+ Y I+ + + + + + F+ +++D + Sbjct: 1 MVVGIEGIITKKEPTFIIVKCASGLSYGIFISLFCSAKI-QTQEKHEFFITQIIKEDSNK 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GFL +++ F +L V GVGA AM V S + +++ L + V+ ++PGI K Sbjct: 60 FYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDVNSFYKALSLSDESVLKKVPGIGPK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL + L +V A++AL+ LG+ Q++ + Sbjct: 120 SAKRIIVELSDTNMKLENV------------------SDDKSEALAALLTLGFKQEKIIS 161 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAI 205 + S S++I+ ALR + Sbjct: 162 VLAS-----SQAIGTSELIKEALRKL 182 >gi|296122693|ref|YP_003630471.1| helix-hairpin-helix motif protein [Planctomyces limnophilus DSM 3776] gi|296015033|gb|ADG68272.1| helix-hairpin-helix motif protein [Planctomyces limnophilus DSM 3776] Length = 207 Score = 107 bits (268), Expect = 8e-22, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 94/205 (45%), Gaps = 14/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQDQI- 58 MI +I G + L ED V +++ Y + P L K+G+ +L ++ + Sbjct: 1 MITRITGKLVRLSEDIVRLEIGAFEYEVLVPEFVRRQLQPKLGEVVSLCTIDYLDGNPQQ 60 Query: 59 -----RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113 RL GFLS+ + ++F ++ SV G+G + + + R E+ E+I Q+ K + + Sbjct: 61 GRLVPRLAGFLSETELEFFEMICSVDGMGVKKTLRAMVR-PVREIAEAIEEQSIKELTLL 119 Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 PG+ +A RI+ +L+ K + +V +++ + A AL+ LG+ Sbjct: 120 PGVGPAMAERIVAKLRRKMTKFALMVAREV------PREADVDRNVLTEAYEALMALGHS 173 Query: 174 QDQATTAVVSVLKKEKNIADDSQII 198 +A + V ++K D ++ Sbjct: 174 SIEARDKIDQVASQKKKFKDVQDVL 198 >gi|227534464|ref|ZP_03964513.1| crossover junction endoribonuclease subunit A [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187863|gb|EEI67930.1| crossover junction endoribonuclease subunit A [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 212 Score = 107 bits (267), Expect = 9e-22, Method: Composition-based stats. Identities = 46/206 (22%), Positives = 93/206 (45%), Gaps = 11/206 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G I+ + Y++IDV G+ + + + G+ ++V+ +R + L Sbjct: 15 MYEYFEGIIQAVTPAYIVIDVHGIGFRLLV-ANPYHF--EAGEQKRVYVQLIIRDNDQTL 71 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF D++ F L +V G+G + A+ +L+ +++ L +I + K + + PGI K Sbjct: 72 YGFEGAADKRTFNQLLTVTGIGPKSALAILANVSSGGLATAIAQDDVKFLTKFPGIGKKT 131 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A++I+ +LKGK + ++ V + + A+ A+ GY Q Sbjct: 132 AAQIILDLKGKITTDGQPAAAAIAPVASDVDSELADALAALVAL------GYPQRTVDGL 185 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 ++ K + +R LR +S Sbjct: 186 TDTL--KAFSAKTTDAYLREGLRLLS 209 >gi|323359952|ref|YP_004226348.1| holliday junction resolvasome, DNA-binding subunit [Microbacterium testaceum StLB037] gi|323276323|dbj|BAJ76468.1| holliday junction resolvasome, DNA-binding subunit [Microbacterium testaceum StLB037] Length = 206 Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 11/175 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G + ED ++I V GV + + + + +GD + +R+D + L Sbjct: 1 MISSLHGTAAHVAEDSLVIVVGGVGFSVAVTSQ-FARTVHVGDDVHVHTNLIVREDALSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S + F L SV GVG + A+GVLS +T ++ +++ + ++ GI K Sbjct: 60 YGFESREELTVFTQLISVTGVGPKSALGVLSSLTVPQIAQAVTDDDDAPFRRVSGIGPKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD 175 A I+ +L GK + + ++ + ALV LG+ + Sbjct: 120 AKLIVVQLAGKLAVVPAAAPAAVAGHG----------QVPLQVTQALVGLGWTER 164 >gi|213420857|ref|ZP_03353923.1| Holliday junction DNA helicase motor protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 106 Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 50/97 (51%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 IG+++G I VL++ GV Y ++ P+ L + G +F +R+D L+ Sbjct: 9 IGRLRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLY 68 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATEL 98 GF + +R F L GVG ++A+ +LS ++A + Sbjct: 69 GFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQF 105 >gi|313473093|ref|ZP_07813577.1| holliday junction DNA helicase RuvA [Lactobacillus jensenii 1153] gi|313448796|gb|EEQ67671.2| holliday junction DNA helicase RuvA [Lactobacillus jensenii 1153] Length = 195 Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 53/201 (26%), Positives = 96/201 (47%), Gaps = 16/201 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G + + ++ +DV G + IY + S G ++VE +R + I L Sbjct: 1 MYEYLEGTVTIITPSFIALDVGGQGFKIY-SAKPYSY--SEGQRIRVYVEQVVRDNDISL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++Q F+ L SV G+G + AM +++ ++ L ++I + + PG+ K Sbjct: 58 YGFESGDEKQLFLKLLSVSGIGPKSAMAIMAAESSDSLAKAIENGEVNYLTKFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK L S V+QD+ + +A+ AL LGY + + Sbjct: 118 ASQIVLDLKGK---LGSYVEQDLFTADT--------SQALSDALLALSALGYTKKEVEKV 166 Query: 181 VVSVLKKEKNIADDSQIIRLA 201 + K + AD + I+ Sbjct: 167 KPKLEKSTYDTAD--EYIKEG 185 >gi|28572651|ref|NP_789431.1| holliday junction DNA helicase RuvA [Tropheryma whipplei TW08/27] gi|28410783|emb|CAD67169.1| holliday junction DNA helicase RuvA [Tropheryma whipplei TW08/27] Length = 174 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 48/185 (25%), Positives = 98/185 (52%), Gaps = 15/185 (8%) Query: 22 QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGV 81 G+ +++ P S ++ L+ +R+D + L+GF S L+ F L ++ GV Sbjct: 2 HGIGFLVRVP---QSFNPEVDAEVKLYTSLQVREDSVSLYGFASVLECTVFEQLITISGV 58 Query: 82 GARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQ 141 G RVA+ +LS +T E+ +++ + K + ++ G+ K+A I+ +L GK S+ ++ Sbjct: 59 GPRVALAILSVLTPAEVAAAVLEGDDKPLQRVSGVGKKLAGTIVLQLAGKLTSVPLENRK 118 Query: 142 DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLA 201 V++ + + AL+ LG+ + ++ AV SVL+K++++ +I+R A Sbjct: 119 QEQAVDR-----------SAEIVQALIGLGWQRQESAAAVESVLEKDQSL-TMPEILRNA 166 Query: 202 LRAIS 206 LR ++ Sbjct: 167 LRYLA 171 >gi|238855608|ref|ZP_04645909.1| holliday junction DNA helicase RuvA [Lactobacillus jensenii 269-3] gi|260665332|ref|ZP_05866180.1| Holliday junction DNA helicase RuvA [Lactobacillus jensenii SJ-7A-US] gi|282933018|ref|ZP_06338412.1| holliday junction DNA helicase RuvA [Lactobacillus jensenii 208-1] gi|238831752|gb|EEQ24088.1| holliday junction DNA helicase RuvA [Lactobacillus jensenii 269-3] gi|260560836|gb|EEX26812.1| Holliday junction DNA helicase RuvA [Lactobacillus jensenii SJ-7A-US] gi|281302872|gb|EFA95080.1| holliday junction DNA helicase RuvA [Lactobacillus jensenii 208-1] Length = 193 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 53/201 (26%), Positives = 96/201 (47%), Gaps = 16/201 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M ++G + + ++ +DV G + IY + S G ++VE +R + I L Sbjct: 1 MYEYLEGTVTIITPSFIALDVGGQGFKIY-SAKPYSY--SEGQRIRVYVEQVVRDNDISL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S ++Q F+ L SV G+G + AM +++ ++ L ++I + + PG+ K Sbjct: 58 YGFESGDEKQLFLKLLSVSGIGPKSAMAIMAAESSDSLAKAIENGEVNYLTKFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK L S V+QD+ + +A+ AL LGY + + Sbjct: 118 ASQIVLDLKGK---LGSYVEQDLFTADT--------SQALSDALLALSALGYTKKEVEKV 166 Query: 181 VVSVLKKEKNIADDSQIIRLA 201 + K + AD + I+ Sbjct: 167 KPKLEKSTYDTAD--EYIKEG 185 >gi|293389007|ref|ZP_06633490.1| holliday junction DNA helicase RuvA [Enterococcus faecalis S613] gi|291081647|gb|EFE18610.1| holliday junction DNA helicase RuvA [Enterococcus faecalis S613] Length = 163 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 36/145 (24%), Positives = 69/145 (47%), Gaps = 2/145 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + Y++++ G+ Y I GK+ L++ +R+D L Sbjct: 20 MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 78 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMK 119 FGF S ++Q F+ L SV G+G + + +++ + L+ +I ++ + + PG+ K Sbjct: 79 FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 138 Query: 120 IASRIMTELKGKAISLSSVVQQDMS 144 A +++ +LKGK L S Sbjct: 139 TAQQMILDLKGKLGELESSEAAGAG 163 >gi|293384502|ref|ZP_06630374.1| holliday junction DNA helicase RuvA [Enterococcus faecalis R712] gi|291078181|gb|EFE15545.1| holliday junction DNA helicase RuvA [Enterococcus faecalis R712] Length = 163 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 36/145 (24%), Positives = 69/145 (47%), Gaps = 2/145 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + Y++++ G+ Y I GK+ L++ +R+D L Sbjct: 20 MYEYIIGKVTFVSPYYIVVETNGIGYQISV-DNPYRYSGKMDTDIKLYLHQVVREDAQLL 78 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISMK 119 FGF S ++Q F+ L SV G+G + + +++ + L+ +I ++ + + PG+ K Sbjct: 79 FGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKK 138 Query: 120 IASRIMTELKGKAISLSSVVQQDMS 144 A +++ +LKGK L S Sbjct: 139 TAQQMILDLKGKLGELESSEAAGGG 163 >gi|89068047|ref|ZP_01155464.1| Holliday junction DNA helicase motor protein [Oceanicola granulosus HTCC2516] gi|89046286|gb|EAR52343.1| Holliday junction DNA helicase motor protein [Oceanicola granulosus HTCC2516] Length = 222 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 61/221 (27%), Positives = 114/221 (51%), Gaps = 17/221 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG++ G ++ D+VLI V GV Y++Y R ++ L G+ +LF + +R+D ++L Sbjct: 1 MIGRLTGRLDYRAGDHVLISVGGVGYVVYVSERVMAALPGNGEPVSLFTDLLVREDLLQL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + ++++W LL SVQG+GA+ ++ +L + A + +I L +++ I+ G+ K Sbjct: 61 FGFTTLVEKEWHRLLMSVQGIGAKASLAILGALGADGVSRAIALGDARAISVAKGVGPKT 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMP---------------SFAINAIS 165 A R++ EL+ KA + ++ + + + A + +A+S Sbjct: 121 AERVVRELRDKAPGVMALGGSIEAALGEVPAAADDGAVLEPADAAPPRAPAGAAQSDALS 180 Query: 166 ALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 ALVNLGY A ++ + +IR AL+ ++ Sbjct: 181 ALVNLGYAPA--EAAGAIAEATGAGESETAGLIRAALKLLA 219 >gi|222529107|ref|YP_002572989.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor bescii DSM 6725] gi|254766939|sp|B9MRB2|RUVA_ANATD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|222455954|gb|ACM60216.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor bescii DSM 6725] Length = 197 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 54/208 (25%), Positives = 96/208 (46%), Gaps = 15/208 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD--QI 58 MI I G I+ ++ +YV+++ + I+C S +G ++V ++ ++ Sbjct: 1 MIDSIVGIIQEVFSNYVILNYNNLYIKIFCNSTKFSEF--LGKEKRVYVSLKFNENLSEL 58 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +GFL+ +R+ F+ LQ V GVG+++A+ +LS I EL+ I N + ++ GI Sbjct: 59 ECYGFLTREERELFLKLQKVTGVGSKLALQILSSIDFQELIVEIAKGNVAKLEKVKGIGK 118 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K ASRI+ ELK V + AL++LGY D+ Sbjct: 119 KTASRIILELKETLKKEFKVASTSGKEEKTYEK--------LEEISLALLSLGYDIDEVN 170 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 + S ++ + I+LAL+ +S Sbjct: 171 QVLSS---EDFSELSLEDGIKLALKKLS 195 >gi|309811443|ref|ZP_07705229.1| Holliday junction DNA helicase RuvA [Dermacoccus sp. Ellin185] gi|308434590|gb|EFP58436.1| Holliday junction DNA helicase RuvA [Dermacoccus sp. Ellin185] Length = 201 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 7/167 (4%) Query: 40 KIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELV 99 + G+ L +R+D + LFGF D +R F +Q+V GVG R+A+ +L+ +L Sbjct: 39 RPGESMRLATSLVVREDSLTLFGFADDDERALFEQVQTVSGVGPRLALAMLAVHPPQQLA 98 Query: 100 ESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSF 159 +I + + + ++PGI K A RI+ EL+ K +S S Q + + Sbjct: 99 TAIAGGDVRALTKVPGIGKKGAERIVLELRDKVVSASGDGGQAAPQA------VVPATAG 152 Query: 160 AINAISALVNLGYGQDQATTAVVSVLKK-EKNIADDSQIIRLALRAI 205 AL+ LG+ QA AV V + E A+ ++RLALR + Sbjct: 153 GDQVAEALIGLGWSAKQAEDAVAKVAARPEAEGANTPTVLRLALREL 199 >gi|312134958|ref|YP_004002296.1| holliday junction DNA helicase ruva [Caldicellulosiruptor owensensis OL] gi|311775009|gb|ADQ04496.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor owensensis OL] Length = 197 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 53/208 (25%), Positives = 95/208 (45%), Gaps = 15/208 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD--QI 58 MI I G I+ ++ +YV+++ + I+C S +G ++V ++ ++ Sbjct: 1 MIDSIVGTIQEVFSNYVILNYNNLYIKIHCNGAKFSEF--LGKEKRVYVSLKFNENLSEL 58 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +GFL+ +R+ F+ LQ V GVG+++A+ +L+ I EL+ I N + ++ GI Sbjct: 59 ECYGFLTREERELFLKLQKVTGVGSKLALQILASIDFQELIVEIAKGNVARLEKVKGIGK 118 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K ASRI+ ELK V + AL++LGY D+ Sbjct: 119 KTASRIILELKETLKKEFKVAATTGKEEKTYEK--------LEEISLALLSLGYDIDEVN 170 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 + S + + I+LAL+ +S Sbjct: 171 QVLSS---GDFSELSLEDGIKLALKKLS 195 >gi|222823639|ref|YP_002575213.1| Holliday junction DNA helicase, DNA-binding subunit [Campylobacter lari RM2100] gi|254766949|sp|B9KFX7|RUVA_CAMLR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|222538861|gb|ACM63962.1| Holliday junction DNA helicase, DNA-binding subunit [Campylobacter lari RM2100] Length = 183 Score = 105 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 42/207 (20%), Positives = 85/207 (41%), Gaps = 25/207 (12%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQ-GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI I+G + +V++ GV Y +Y + + L + +++D + Sbjct: 1 MIVAIEGIVSKKEPTFVVLKTSSGVSYGVYVSLFCSGNF-EKDQKIELSITQIIKEDSHK 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL +++ F LL + G+GA AM + S + ++ + V ++PGI K Sbjct: 60 LYGFLDTNEQRMFELLIKISGIGATTAMALCSSLDTNTFYTALQSGDESVFKKVPGIGPK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL I++ + Q + + G+ Q+ Sbjct: 120 SAKRIIAELSDAKINIENSNQDHAQALAALLSL------------------GFKQENILK 161 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 + + + S++I+ AL+ ++ Sbjct: 162 VLRT-----CESQNTSELIKEALKKLA 183 >gi|302872058|ref|YP_003840694.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor obsidiansis OB47] gi|302574917|gb|ADL42708.1| Holliday junction DNA helicase RuvA [Caldicellulosiruptor obsidiansis OB47] Length = 197 Score = 105 bits (261), Expect = 5e-21, Method: Composition-based stats. Identities = 53/208 (25%), Positives = 95/208 (45%), Gaps = 15/208 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQD--QI 58 MI I G I+ ++ +Y++++ + I+C S +G ++V ++ ++ Sbjct: 1 MIDSIMGTIQEVFSNYIILNYNNLYIKIHCNGAKFSEF--LGKEKRVYVSLKFNENLSEL 58 Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 +GFL+ +R+ F+ LQ V GVG+++A+ +LS I EL+ I N + ++ GI Sbjct: 59 ECYGFLTREERELFLKLQKVTGVGSKLALQILSSIDFQELIVEIAKGNVARLEKVKGIGK 118 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K ASRI+ ELK V + AL++LGY D+ Sbjct: 119 KTASRIILELKETLKKEFKVAATTGKEEKTYEK--------LEEISLALLSLGYDIDEVN 170 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAIS 206 + S + + I+LAL+ +S Sbjct: 171 QVLSS---GDFSELSLEDGIKLALKKLS 195 >gi|237751366|ref|ZP_04581846.1| holliday junction DNA helicase motor protein [Helicobacter bilis ATCC 43879] gi|229372732|gb|EEO23123.1| holliday junction DNA helicase motor protein [Helicobacter bilis ATCC 43879] Length = 189 Score = 104 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 95/205 (46%), Gaps = 19/205 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++KGNIE L V ++V GV Y++ + T + L + TL + +R+D L Sbjct: 1 MIVRLKGNIEKLLPTGVELEVSGVTYMVEISLLTSAAL-QNKTHVTLEIAEIIREDSHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + +R+ F+ L V GVGA++A+ +LS + + + + N + + GI K+ Sbjct: 60 YGFETRREREVFLQLLKVNGVGAKIALMILSSYSVEQFLAIVQTNNLAALKGVKGIGTKV 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM EL G Q+ A ALV LG+ Q T A Sbjct: 120 AGKIMLELAG-----------------YTQSIQTPNNVNVQLAHEALVALGFKDTQITQA 162 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + + + +++ L+ + Sbjct: 163 LQGLSNEILQMP-PNDMVKAILQTL 186 >gi|330836553|ref|YP_004411194.1| Holliday junction ATP-dependent DNA helicase ruvA [Spirochaeta coccoides DSM 17374] gi|329748456|gb|AEC01812.1| Holliday junction ATP-dependent DNA helicase ruvA [Spirochaeta coccoides DSM 17374] Length = 209 Score = 104 bits (259), Expect = 9e-21, Method: Composition-based stats. Identities = 43/197 (21%), Positives = 85/197 (43%), Gaps = 12/197 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL----GKIGDFCTLFVETHMRQD 56 MI + G + + ++ + + I +T S L + L R+D Sbjct: 1 MIHALTGILVSVTAHQAVLACGHMEFEIIISAQTASTLSQLSPEKRQHVRLLTYLQHRED 60 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 + LFGFLS+ +R F LQ+V G+GA+ A+ +L ++ L+ ++ + K +++IPG+ Sbjct: 61 AMVLFGFLSEQERIVFEQLQTVPGIGAKQAVKILGGMSLVTLLTALDQGDVKTLSRIPGV 120 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 K A R++ L+G + +A S + AL +GY + + Sbjct: 121 GSKTAQRLILALRGTLVLEDDATPG--------KAPSPSATGRWTDLSEALQEMGYDRKK 172 Query: 177 ATTAVVSVLKKEKNIAD 193 + + K+ ++ Sbjct: 173 VMEILARLEKEHESEMS 189 >gi|283781353|ref|YP_003372108.1| DNA recombination protein RuvA domain I [Pirellula staleyi DSM 6068] gi|283439806|gb|ADB18248.1| DNA recombination protein RuvA domain I [Pirellula staleyi DSM 6068] Length = 210 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 52/207 (25%), Positives = 97/207 (46%), Gaps = 18/207 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYC---PIRTLSCLGKIGDFCTLFVETHMRQD- 56 MI +I + L +D ++ Y + RTLS +G +L ++ D Sbjct: 1 MITRITAKLIQLTDDAAILSAPPFDYEVLIAAVSRRTLSS--SVGQEISLHTIHYLDGDP 58 Query: 57 -----QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIA 111 RL GF+S+++R++F + SV GVGA+ A+ + R E+ I Q+++ ++ Sbjct: 59 SRGKVTPRLVGFVSEVEREFFEMFCSVDGVGAKKALRAMQR-PVQEISVMIEEQDAEGLS 117 Query: 112 QIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLG 171 +PGI A RI+ +L+ K + +V ++ + + + + + AL LG Sbjct: 118 SLPGIGAATAERIIAKLRRKMSKFALLVARESAGETEIKRDVVELS------FEALRTLG 171 Query: 172 YGQDQATTAVVSVLKKEKNIADDSQII 198 + + A + SVLK +K AD ++ Sbjct: 172 HSESDARKLLDSVLKSKKKFADVEAVL 198 >gi|320102187|ref|YP_004177778.1| holliday junction DNA helicase RuvA [Isosphaera pallida ATCC 43644] gi|319749469|gb|ADV61229.1| holliday junction DNA helicase RuvA [Isosphaera pallida ATCC 43644] Length = 232 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 45/215 (20%), Positives = 95/215 (44%), Gaps = 18/215 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQ-- 57 MI ++G +E + ++ ++ V ++ T + K+G+ L+ ++ + Sbjct: 1 MITLVRGILERVGQEEAILSVPPWEIEVWVTELTRRQIQTKLGEEIRLYTILNIEGNATM 60 Query: 58 ----IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113 RL GFLS ++R++F + SV GVG R A+ + + +L +I Q+ +A Sbjct: 61 GRMSPRLIGFLSPVEREFFEVFCSVDGVGVRKALRAICQ-PVKDLARTIQDQDVATLATF 119 Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVN----------KEQAHICSMPSFAINA 163 PG+ +A RI+ +L+ K + + + + + P + Sbjct: 120 PGVGEALAERIVAKLRRKVGKFALALGDPRVPASRFTASDLEDAPHSSSNATDPEIVRDV 179 Query: 164 ISALVNLGYGQDQATTAVVSVLKKEKNIADDSQII 198 +AL+++G+ + QA A+ L +K + +I Sbjct: 180 YAALLSVGHTETQARQAIDQALSSKKAFRSVADMI 214 >gi|206603017|gb|EDZ39497.1| probable Holliday junction DNA helicase (RuvA) [Leptospirillum sp. Group II '5-way CG'] Length = 208 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 80/201 (39%), Gaps = 7/201 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGD--FCTLFVETHMRQ--D 56 MI ++ G E+ V++ V Y ++ + L + L ++ + + Sbjct: 1 MIARLWGVPVEWEEESVILRAGDVGYRVHLSPCSHQKLRSRPEGLVLELLIQHFWNEHLE 60 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L GF ++ F L+ V G+G A+ +L+ I + + + ++ + + G+ Sbjct: 61 APLLAGFPDPEEQTLFNQLRKVPGLGPLSALRLLA-IPVGDFLTIVRDNDAGRLKGLKGV 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 K A +I+ EL+G ++ K S+ + + + G+ + Sbjct: 120 GEKTARKILGELRGHVDWIAESTSGLSPASGKSPESPASLARSVQDVL--VRQFGHTPQE 177 Query: 177 ATTAVVSVLKKEKNIADDSQI 197 A V L+++ +I+ ++ Sbjct: 178 AQRLVSEALRRQPSISSMEEL 198 >gi|325106603|ref|YP_004267671.1| Holliday junction DNA helicase subunit RuvA [Planctomyces brasiliensis DSM 5305] gi|324966871|gb|ADY57649.1| Holliday junction DNA helicase subunit RuvA [Planctomyces brasiliensis DSM 5305] Length = 208 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 15/206 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCL-GKIGDFCTLFVETHMRQD--- 56 MI I+G + L E +++ ++ P L GKIG+ L ++ + Sbjct: 1 MISSIRGELLALEETSAFLNIGAFTIEVFIPDFVRRQLQGKIGEPIELRTMAYLDGNPQK 60 Query: 57 ----QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQ 112 RL GF S + +F L+ SV G+G + A+ + R E+ +I Q++K ++ Sbjct: 61 GGRMTPRLVGFTSKAELAFFELICSVDGLGIKKALAAIVR-PVREVAAAIEQQDTKTLST 119 Query: 113 IPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 +PGI +A RI+ +L+ K + +V Q + M AL+ LG+ Sbjct: 120 LPGIGPAVAERIVAKLRRKMTRFALMVDQASGEAYE------PMNDQVSETYEALLALGH 173 Query: 173 GQDQATTAVVSVLKKEKNIADDSQII 198 D A + + LK K ++ Sbjct: 174 SADDAHNKIDTALKSGKKFKSVEDML 199 >gi|187917906|ref|YP_001883469.1| Holliday junction DNA helicase RuvA [Borrelia hermsii DAH] gi|229560005|sp|B2S1L2|RUVA_BORHD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|119860754|gb|AAX16549.1| Holliday junction DNA helicase RuvA [Borrelia hermsii DAH] Length = 196 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 49/211 (23%), Positives = 96/211 (45%), Gaps = 21/211 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI KI G I E ++I + + + L ++ + + H+R+D+I+L Sbjct: 1 MINKIYGKIIEKRESSIVIVALPFEFEVLVSSFCNAEL-RLLEDVEILTYLHLREDEIKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ +R+ F L SV G+G R A+ +LS + E ++I ++ K I+ + GI K+ Sbjct: 60 FGFLNVSEREVFEELISVDGIGPRAALRMLSGMKYDEFRDAIEREDVKRISTVKGIGNKV 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I +L+GK + + + ++VN+G+ + A Sbjct: 120 AGKIFLKLRGKLVKADELTSSVFK---------------FKDLEQSIVNMGFDRKLVVAA 164 Query: 181 VVSVL--KKEKNIADDSQ---IIRLALRAIS 206 + ++ + + + Q + R L+ +S Sbjct: 165 IKEIMLIDEFLMLREVEQEQFLFRETLKRLS 195 >gi|302338526|ref|YP_003803732.1| Holliday junction DNA helicase RuvA [Spirochaeta smaragdinae DSM 11293] gi|301635711|gb|ADK81138.1| Holliday junction DNA helicase RuvA [Spirochaeta smaragdinae DSM 11293] Length = 202 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 41/213 (19%), Positives = 83/213 (38%), Gaps = 19/213 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G I G + + + + + + + V R+D + L Sbjct: 1 MIESLTGTITGRQGTVLFLSTGAIEWALEATSSAAMKFASSKETVQIPVHLIHREDAMLL 60 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 F F S +R F L V G+G + A+ +LS + A + ++ ++ +++ IPG+ K Sbjct: 61 FAFASKKERNLFRELLKVSGIGPKQAVRILSGMEADRFIAALENEDVDLLSSIPGVGKKS 120 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I+ L+GK + + + AL +G+ + A A Sbjct: 121 AGKIILALRGKLTPAEEEGEAGDESL------------PFKELVEALNGMGFDRKLAEKA 168 Query: 181 VVSVLKK------EKNIADDS-QIIRLALRAIS 206 + + L + E + ++ R A+ +S Sbjct: 169 LKAALNELEPERFEHDHEKLERELFRAAIVRLS 201 >gi|301168494|emb|CBW28084.1| holliday junction DNA helicase ruvA [Bacteriovorax marinus SJ] Length = 216 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 97/221 (43%), Gaps = 23/221 (10%) Query: 1 MIGKIKGNIE-GLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MIG ++G + + V++ G+ Y +Y + + G ++F+ +++ Sbjct: 1 MIGHLQGEVIFSDGVEAVVLTNSGIGYQVYI-----NQVLPEGKSASIFISHVIKEASEE 55 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + +++ F LL SV+GVG + A ++ + +++ SI+ + K + + PGI K Sbjct: 56 LYGFKTIREKKLFELLTSVKGVGPKSAFSLVGALGVDQIINSILFDDKKSLTKAPGIGNK 115 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS----------------FAINA 163 A++++ +L+ K + + + I + + +A Sbjct: 116 AAAQMILDLQNKISKIKMYSNKSKGIQDVPAIQIPELSTSEQEESVHRESDNQELIIKDA 175 Query: 164 ISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204 I A LG+ +++ +L I+ Q++ L L+ Sbjct: 176 IMACKELGFKEEKIIPLAQKILATN-EISKPEQLVHLVLKE 215 >gi|218462458|ref|ZP_03502549.1| Holliday junction DNA helicase RuvA [Rhizobium etli Kim 5] Length = 168 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 71/170 (41%), Positives = 113/170 (66%), Gaps = 3/170 (1%) Query: 37 CLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITAT 96 LG G+ C LF+ET++R+DQ++LFGF + L+R+WF LLQSVQGVGA+VA+ VLS +T Sbjct: 1 KLGSAGEACVLFIETYVREDQLKLFGFTTALEREWFNLLQSVQGVGAKVALAVLSTLTPG 60 Query: 97 ELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM 156 EL +I LQ+ +++ PG+ K+A R++TELK +A + + + ++ K++ Sbjct: 61 ELANAIALQDRAAVSRAPGVGPKVAMRLVTELKNRAPAFAG---EAINIALKQELGEGVA 117 Query: 157 PSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 + +A+SAL NLGY +DQA AV + +K AD +++IRL L+ ++ Sbjct: 118 AAPVADAVSALTNLGYSRDQAANAVAAAMKTAGEGADSAKLIRLGLKELA 167 >gi|124516217|gb|EAY57725.1| probable holliday junction DNA helicase (RuvA) [Leptospirillum rubarum] Length = 208 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 82/201 (40%), Gaps = 7/201 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGD--FCTLFVETHMRQ--D 56 MI ++ G E+ V++ V Y ++ + L + L ++ + + Sbjct: 1 MIARLWGVPVEWEEESVILRAGDVGYRVHLSPCSHQKLRSRPEGLVLELLIQHFWNEHLE 60 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 L GF ++ F L+ V G+G A+ +L+ I + + + ++ + + G+ Sbjct: 61 APLLAGFPDPDEQTLFNQLRKVPGLGPLSALRLLA-IPVGDFLTIVRDNDAGRLKGLKGV 119 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 K A +I+ EL+G+ ++ + K S+ + + + G+ + Sbjct: 120 GEKTARKILGELRGQVDWIAESSTVITASSGKGPDTPASLARSVQDVL--VRQFGHSPLE 177 Query: 177 ATTAVVSVLKKEKNIADDSQI 197 A V L+++ +I+ ++ Sbjct: 178 AQRLVSEALRRQPSISSMEEL 198 >gi|134093539|ref|YP_001098614.1| Holliday junction DNA helicase ruvA [Herminiimonas arsenicoxydans] Length = 161 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 16/175 (9%) Query: 32 IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91 + T L +G+ L +R+D LFGF + +R F L + G+GAR A+ +LS Sbjct: 1 MSTFYNLPGLGEKVALLTHLTVREDAHILFGFGTAEERNVFKQLVKITGIGARTALSILS 60 Query: 92 RITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQA 151 ++ +L +I LQ + + +IPGI K A R + + + A Sbjct: 61 GMSVADLSNAITLQEAGRLTKIPGIGKKTAER------------LLLELKGKLGADLGAA 108 Query: 152 HICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 + ++AL+ LGY +A A+ V S I+LAL+A+S Sbjct: 109 GGVIHSDATSDILNALLALGYSDKEALLAMKQV----PAGTGVSDGIKLALKALS 159 >gi|319790481|ref|YP_004152114.1| Holliday junction DNA helicase RuvA [Thermovibrio ammonificans HB-1] gi|317114983|gb|ADU97473.1| Holliday junction DNA helicase RuvA [Thermovibrio ammonificans HB-1] Length = 190 Score = 101 bits (251), Expect = 7e-20, Method: Composition-based stats. Identities = 48/207 (23%), Positives = 88/207 (42%), Gaps = 27/207 (13%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMR-QDQIR 59 M+ + G + G + V + + P R L L + G TL+ E + + Sbjct: 1 MVEAVSGTVSGKGDGAVFLSCGCFTLRLLVPERLLPELHE-GTHVTLYTELLFPQEGAPQ 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 LFGF + +R+ F L V VG+R+A+ VLS + E V+ + ++ + ++++PG+ K Sbjct: 60 LFGFKTREERELFRQLMKVPKVGSRLALAVLSVFSPEEFVKVLEGEDVEALSKVPGLGRK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 ++ R++TELKGK +S L LGY + Sbjct: 120 LSRRLITELKGKLVS----------------------GEVPREVKEVLRRLGYTTAEINE 157 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ + + ++ AL+ +S Sbjct: 158 ALKGL---NLTGVGVEEAVKEALKRLS 181 >gi|88856266|ref|ZP_01130926.1| holliday junction DNA helicase [marine actinobacterium PHSC20C1] gi|88814585|gb|EAR24447.1| holliday junction DNA helicase [marine actinobacterium PHSC20C1] Length = 205 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 85/205 (41%), Gaps = 15/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIY-CPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 MI ++G + ++I+V GV + P LS ++G L +R+D + Sbjct: 1 MISSLRGTVLAAVGTSIVIEVGGVGLSVSVIPEHALS--VRVGAETQLNTVLIVREDDLS 58 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + + F LL+ V GVG + AMGVL+ +T ++ ++ +N ++ GI K Sbjct: 59 LYGFRTREELDVFALLRGVTGVGPKSAMGVLAALTPDDIARAVAEENDSAFRKVTGIGPK 118 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQD--QA 177 A I+ L GK + D + + + AL LG+ + + Sbjct: 119 TAKLIVLNLTGKLEVSALKRGPDS----------VAATPISESVSMALQGLGWSEKLARP 168 Query: 178 TTAVVSVLKKEKNIADDSQIIRLAL 202 E + I+R AL Sbjct: 169 AAEAAFAEASEAEKENTQAILRRAL 193 >gi|284044634|ref|YP_003394974.1| Holliday junction DNA helicase RuvA [Conexibacter woesei DSM 14684] gi|283948855|gb|ADB51599.1| Holliday junction DNA helicase RuvA [Conexibacter woesei DSM 14684] Length = 198 Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats. Identities = 50/217 (23%), Positives = 84/217 (38%), Gaps = 37/217 (17%) Query: 1 MIGKIKGNIEGLYED--------------YVLIDVQGVCYIIYCPIRTLSCLGKIGDFCT 46 MI ++G + G Y + TL + G T Sbjct: 1 MIALVRGEVAGRRPAAPAGGDVVVDVNGVG---------YRLAVSSETLKQVPAAGKRVT 51 Query: 47 LFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQN 106 L +R D ++L+GF ++ +R F++L VQ VG +VA+ VLS T EL+ ++ + Sbjct: 52 LHSHLIVRDDALQLYGFATEEERDLFLMLLGVQSVGPKVALAVLSGGTPRELLGALAAGD 111 Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISA 166 + +PGI + A RI+ EL+ K ++ + + A Sbjct: 112 AARFQAVPGIGKRTAERIIVELREK---------AGVAVPDDAVHGSVASDDPRTLAREG 162 Query: 167 LVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 LV LG+ D+A + ++I ALR Sbjct: 163 LVGLGFSLDEAERLLKRA-----PGETAEELIAHALR 194 >gi|160902900|ref|YP_001568481.1| helix-hairpin-helix DNA-binding motif-containing protein [Petrotoga mobilis SJ95] gi|254767380|sp|A9BIJ5|RUVA_PETMO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|160360544|gb|ABX32158.1| helix-hairpin-helix motif [Petrotoga mobilis SJ95] Length = 190 Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 15/205 (7%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI KI IE ++ VLI + + Y + + K GD F + + L Sbjct: 1 MIRKINATIEDFEDEKVLIKIGVLTLEAYPSLNVIRYF-KKGDQYEFFASLEISEWNTSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 + F ++R F L+ V +G R+A +L + A E ++ I Q++ +++ +PGI K Sbjct: 60 YIFKDKIERDVFESLKKVSKIGPRIASKILRKTDAEEFIQMINSQDTALLSSLPGIGKKT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R+++E + S + + AI AL LG+ + + Sbjct: 120 AERLISE-----------LSNSFSAYSTGADTQSYGNNNLKEAIEALETLGFQRYEIMKV 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + + + +II+ L + Sbjct: 169 IGQL---DLEDLKTEEIIKECLTRL 190 >gi|57242124|ref|ZP_00370064.1| Holliday junction DNA helicase RuvA [Campylobacter upsaliensis RM3195] gi|57017316|gb|EAL54097.1| Holliday junction DNA helicase RuvA [Campylobacter upsaliensis RM3195] Length = 183 Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats. Identities = 46/207 (22%), Positives = 92/207 (44%), Gaps = 25/207 (12%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 M+ I+G I + ++ GV Y IY + + L ++ C L + +++D + Sbjct: 1 MVVAIEGIITKKEPTFAVLKTQNGVSYGIYISLFCAAKL-ELHTKCELLITQIIKEDSHK 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL +++ F +L V G+GA AM + S + + +++ L + V ++PGI K Sbjct: 60 LYGFLEKDEQKIFEMLLKVNGIGATTAMTICSSLDSNAFYKALSLNDESVFKKVPGIGAK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL + ++V + + G+ QD+ + Sbjct: 120 SAKRIIVELADAKTAFNNVSDDKAQALAALLSL------------------GFKQDKILS 161 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 + + D S++I+ AL+ ++ Sbjct: 162 VLAT-----CEAKDTSELIKEALKKLA 183 >gi|119952829|ref|YP_945038.1| Holliday junction DNA helicase RuvA [Borrelia turicatae 91E135] gi|254766946|sp|A1QYH6|RUVA_BORT9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|119861600|gb|AAX17368.1| Holliday junction DNA helicase RuvA [Borrelia turicatae 91E135] Length = 196 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 53/211 (25%), Positives = 99/211 (46%), Gaps = 21/211 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI KI G I E ++I + I + LG + + + H+R+D+IRL Sbjct: 1 MINKICGKIVEKRESSIVIVALPFEFEILVSSFCNAELG-LQEDVEILTYLHLREDEIRL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ +R+ F L SV G+G + A+ +LS I E +++ ++ K+I+ + GI K+ Sbjct: 60 FGFLNVSEREVFEKLISVDGIGPKAALRILSGIKYNEFRDAVEREDVKLISNVKGIGNKM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I +L+GK + ++ + ++VN+G+ + A Sbjct: 120 AGKIFLKLRGKLVKVNEASSGVLK---------------FKELEQSIVNMGFDRKLVAAA 164 Query: 181 VVSVLKKEKNIA----DDSQ-IIRLALRAIS 206 + ++ ++ + D Q + R LR +S Sbjct: 165 IKEIMLIDEFLMLRQVDQEQFLFREILRKLS 195 >gi|72080739|ref|YP_287797.1| Holliday junction DNA helicase RuvA [Mycoplasma hyopneumoniae 7448] gi|90135315|sp|Q4A7W5|RUVA_MYCH7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|71913863|gb|AAZ53774.1| holliday junction DNA helicase RuvA [Mycoplasma hyopneumoniae 7448] Length = 221 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 50/216 (23%), Positives = 87/216 (40%), Gaps = 24/216 (11%) Query: 7 GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD 66 G I ++Y++++ G Y+IY P + +++ H +GF S Sbjct: 7 GKIVSKNKNYLILENHGSGYLIYVPRIDRFS---RDENRKIYIYEHENDYTKITYGFASF 63 Query: 67 LDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 +R F L S+QGVG + A+ L+ L+ I + K +A+IP +S K A +I+ Sbjct: 64 RERILFEDLISIQGVGPKTAISALNS-GMQNLINLIAANDWKTLAKIPYLSEKNAKQIVF 122 Query: 127 ELKGKAISLSSVVQQDMSCVNKEQ-----------AHICSMPSFAINAISA-----LVNL 170 E + K + + N++ A I S + +A L L Sbjct: 123 EFQKKYERFNENHKNQTEETNQDSQEKELEKNDDLADITIQKSNLEDKTAANLEDTLKML 182 Query: 171 GYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 G+ Q A+ V E + +I A++ IS Sbjct: 183 GFKPRQIDYALTKVEPNE----NFENLIENAIKIIS 214 >gi|71893769|ref|YP_279215.1| Holliday junction DNA helicase RuvA [Mycoplasma hyopneumoniae J] gi|90135325|sp|Q4A9R7|RUVA_MYCHJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|71851896|gb|AAZ44504.1| holliday junction DNA helicase RuvA [Mycoplasma hyopneumoniae J] Length = 221 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 50/216 (23%), Positives = 87/216 (40%), Gaps = 24/216 (11%) Query: 7 GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD 66 G I ++Y++++ G Y+IY P + +++ H +GF S Sbjct: 7 GKIVSKNKNYLILENHGSGYLIYVPRIDRFS---RDENRKIYIYEHENDYTKITYGFASF 63 Query: 67 LDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 +R F L S+QGVG + A+ L+ L+ I + K +A+IP +S K A +I+ Sbjct: 64 RERILFEDLISIQGVGPKTAISALNS-GMQNLINLIAANDWKTLAKIPYLSEKNAKQIVF 122 Query: 127 ELKGKAISLSSVVQQDMSCVNKEQ-----------AHICSMPSFAINAISA-----LVNL 170 E + K + + N++ A I S + +A L L Sbjct: 123 EFQKKYERFNENHKNQTEETNQDSQEKELEKKDDLADITIQKSNLEDKTAANLEDTLKML 182 Query: 171 GYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 G+ Q A+ V E + +I A++ IS Sbjct: 183 GFKPRQIDYALTKVEPNE----NFENLIENAIKIIS 214 >gi|312601377|gb|ADQ90632.1| Holliday junction ATP-dependent DNA helicase ruvA [Mycoplasma hyopneumoniae 168] Length = 221 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 50/216 (23%), Positives = 87/216 (40%), Gaps = 24/216 (11%) Query: 7 GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD 66 G I ++Y++++ G Y+IY P + +++ H +GF S Sbjct: 7 GKIVSKNKNYLILENHGSGYLIYVPRIDRFN---RDENRKIYIYEHENDYTKITYGFASF 63 Query: 67 LDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 +R F L S+QGVG + A+ L+ L+ I + K +A+IP +S K A +I+ Sbjct: 64 RERILFEDLISIQGVGPKTAISALNS-GMQNLINLIAANDWKTLAKIPYLSEKNAKQIVF 122 Query: 127 ELKGKAISLSSVVQQDMSCVNKEQ-----------AHICSMPSFAINAISA-----LVNL 170 E + K + + N++ A I S + +A L L Sbjct: 123 EFQKKYERFNENHKNQAEETNQDTQEKELEKKDDLADITIQKSNLEDRTAANLEDTLKML 182 Query: 171 GYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 G+ Q A+ V E + +I A++ IS Sbjct: 183 GFKPRQIDYALTKVEPNE----NFENLIENAIKIIS 214 >gi|161936257|ref|YP_115931.2| Holliday junction DNA helicase RuvA [Mycoplasma hyopneumoniae 232] Length = 221 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 51/216 (23%), Positives = 86/216 (39%), Gaps = 24/216 (11%) Query: 7 GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD 66 G I ++Y++++ G Y+IY P + +++ H +GF S Sbjct: 7 GKIVSKNKNYLILENHGSGYLIYVPRIDRFS---RDENRKIYIYEHENDYTKITYGFASF 63 Query: 67 LDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 +R F L S+QGVG + A+ L+ L+ I + K +A+IP +S K A +I+ Sbjct: 64 RERILFEDLISIQGVGPKTAISALNS-GMQNLINLIAANDWKTLAKIPYLSEKNAKQIVF 122 Query: 127 ELKGKAISLSSVVQQDMSCVNKEQ-----------AHICSMPSFAINAISA-----LVNL 170 E + K + + N E A I S + +A L L Sbjct: 123 EFQKKYERFNENHKNQTEETNPETQEKELEKEDDLADITIQKSNLEDKTAANLEDTLKML 182 Query: 171 GYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 G+ Q A+ V E + +I A++ IS Sbjct: 183 GFKPRQIDYALTKVEPNE----NFENLIENAIKIIS 214 >gi|291320151|ref|YP_003515412.1| Holliday junction DNA helicase RuvA [Mycoplasma agalactiae] gi|290752483|emb|CBH40455.1| Holliday junction DNA helicase ruvA [Mycoplasma agalactiae] Length = 198 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 85/206 (41%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI G I + ++ + QG+ Y + P +I C L++ + Q Sbjct: 1 MILYRIGEIIHKHNSNIIFESQGIGYSLILPDP---ERVEIKQKCKLYLFEIKNEYQYAT 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 + F +R F+ L S+ G+G R A +L+ ++ I N++ + +IP ++ ++ Sbjct: 58 YAFKDFKERLLFVDLISLNGIGPRAAFNILN-FGFEKVAALIAEGNAEALIEIPYLNPRM 116 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A I+ EL+ K + S K+ A I + L LG+ Q A Sbjct: 117 ARLIVAELQAKWSKMIS---------PKDAAKINETTNALSEVKETLKMLGFKTKQIDGA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + D ++I A++ +S Sbjct: 168 LSKISSTD----DVEKMIEEAIKLMS 189 >gi|325001439|ref|ZP_08122551.1| Holliday junction DNA helicase RuvA [Pseudonocardia sp. P1] Length = 173 Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 86/176 (48%), Gaps = 7/176 (3%) Query: 30 CPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGV 89 TL L + G+ L +R++ + LFGF +R+ F+LLQ+V G+G R+A+ Sbjct: 1 ATPSTLGGL-RRGEETRLATTLVVREESLTLFGFADTEERELFLLLQTVSGIGPRLALAT 59 Query: 90 LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKE 149 ++ + L ++ + V+ +IPG+ K A R++ EL+ K + ++ S Sbjct: 60 IAVLEPDTLRRALADGDLAVLTRIPGVGRKSAERLVVELRDKVTAPAAAPAGATS----- 114 Query: 150 QAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A + + AL+ LG+ Q A AV VL ++ + S ++R AL ++ Sbjct: 115 AAAPSPVLGVREQVVEALLGLGFPQRPAEQAVDGVLAEQPD-TSASGLLRTALSSL 169 >gi|315638160|ref|ZP_07893342.1| crossover junction ATP-dependent DNA helicase RuvA [Campylobacter upsaliensis JV21] gi|315481696|gb|EFU72318.1| crossover junction ATP-dependent DNA helicase RuvA [Campylobacter upsaliensis JV21] Length = 183 Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 46/207 (22%), Positives = 93/207 (44%), Gaps = 25/207 (12%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 M+ I+G I + ++ GV Y IY + + L ++ C L + +++D + Sbjct: 1 MVVAIEGIITKKEPTFAVLKTQNGVSYGIYISLFCAAKL-ELHTKCELLITQIIKEDSHK 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GFL +++ F +L V G+GA AM + S + + +++ L + V ++PGI K Sbjct: 60 LYGFLEKDEQKIFEMLLKVNGIGATTAMAICSSLDSNAFYKALSLNDESVFKKVPGIGAK 119 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A RI+ EL ++ ++V + + G+ QD+ + Sbjct: 120 SAKRIIVELSDSKMAFNNVSDDKAQALAALLSL------------------GFKQDKILS 161 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 + + D S++I+ AL+ ++ Sbjct: 162 ILAT-----CEAKDTSELIKEALKKLA 183 >gi|311894864|dbj|BAJ27272.1| putative Holliday junction ATP-dependent DNA helicase RuvA [Kitasatospora setae KM-6054] Length = 203 Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 9/169 (5%) Query: 29 YCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMG 88 C TL+ L ++G+ L +R+D + LFGF+ D +R F +LQ+ GVG ++A Sbjct: 29 QCTPATLATL-RVGETARLATSLVVREDSLTLFGFVDDDERATFEVLQAAPGVGPKLAQA 87 Query: 89 VLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNK 148 +L + L +I + K + +PGI A++++ E K K + V Sbjct: 88 ILGTHSPEALRVAIAGGDEKALIAVPGIGKAKAAKLLLEYKDKLGAPHGSVPA------- 140 Query: 149 EQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQI 197 ++ + +ALV LGY +A AV V E + Sbjct: 141 QKPVAAGPAPWHEQLHAALVGLGYAPREAEEAVARV-TPEAEAQSVPDV 188 >gi|312969902|ref|ZP_07784085.1| ruvA N terminal domain protein [Escherichia coli 1827-70] gi|310338187|gb|EFQ03276.1| ruvA N terminal domain protein [Escherichia coli 1827-70] Length = 107 Score = 99.0 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 30/102 (29%), Positives = 54/102 (52%) Query: 18 LIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQS 77 LI+V GV Y ++ P+ L + G +F +R+D L+GF + +R F L Sbjct: 2 LIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIK 61 Query: 78 VQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 GVG ++A+ +LS ++A + V ++ + + ++PGI K Sbjct: 62 TNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKK 103 >gi|291545898|emb|CBL19006.1| Holliday junction resolvasome, DNA-binding subunit [Ruminococcus sp. SR1/5] Length = 134 Score = 99.0 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 42/133 (31%), Positives = 63/133 (47%), Gaps = 1/133 (0%) Query: 71 WFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 F LL V GVG + A+G+LS I+A EL +++ + K I++ PGI K A +++ ELK Sbjct: 1 MFKLLIGVNGVGPKGALGILSGISADELRFAVLSDDVKTISKAPGIGKKTAQKMILELKD 60 Query: 131 KAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKN 190 K + + + + A+ ALV LGY A AV V + Sbjct: 61 KLKLEDAFEMKLAHQQEEAAEGASDLRDSRQEAVEALVALGYSSADALRAVRKVPEDVPA 120 Query: 191 IADDSQIIRLALR 203 D I+R AL+ Sbjct: 121 D-DVEAILRAALK 132 >gi|167770542|ref|ZP_02442595.1| hypothetical protein ANACOL_01888 [Anaerotruncus colihominis DSM 17241] gi|167667137|gb|EDS11267.1| hypothetical protein ANACOL_01888 [Anaerotruncus colihominis DSM 17241] Length = 172 Score = 98.6 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 49/178 (27%), Positives = 83/178 (46%), Gaps = 9/178 (5%) Query: 29 YCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMG 88 + TLSCL +G TL+ ++R+D + L+GF + + F +L V GVG + A+ Sbjct: 1 MTTLTTLSCLPPVGGEATLYTHLNVREDALDLYGFYTQAELNAFKMLIGVSGVGPKSALA 60 Query: 89 VLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNK 148 +LS +T +L I +SK + PGI K A RI+ E K + + +++ Sbjct: 61 ILSDMTPDKLALCIAAGDSKSLRAAPGIGPKAAQRIILECKDRIG-----ASELSGEMSE 115 Query: 149 EQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 + + + A SAL LGY +A A+ + +I+ L+A+S Sbjct: 116 VASQLRHETTNMSEAASALAALGYSPTEAAQALAGLAADMP----VEDMIKHGLKALS 169 >gi|313678674|ref|YP_004056414.1| Holliday junction DNA helicase [Mycoplasma bovis PG45] gi|312950114|gb|ADR24709.1| Holliday junction DNA helicase [Mycoplasma bovis PG45] Length = 198 Score = 98.6 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 83/206 (40%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI G I + ++ + QG+ Y + P + C L++ + Q Sbjct: 1 MILYRIGEIIHKHNSNIIFESQGIGYSLILPDP---ERVDVKQKCKLYLFEIKNEYQYAT 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 + F +R F+ L S+ G+G + A +L+ ++ I N + + +IP ++ ++ Sbjct: 58 YAFKDFKERLLFVDLISLNGIGPKAAFNILN-FGFEKVSALIAEGNVEALIKIPYLNPRM 116 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A I+ EL+ K + S + A I + A L LG+ Q A Sbjct: 117 ARLIVAELQAKWSKMISPKEV---------AKISVSTNTISEAKETLKMLGFKTKQIDNA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + V + D ++I A++ IS Sbjct: 168 LAKVSTTD----DIEKMIEEAIKLIS 189 >gi|158316901|ref|YP_001509409.1| DNA recombination protein RuvA [Frankia sp. EAN1pec] gi|158112306|gb|ABW14503.1| DNA recombination protein RuvA domain I [Frankia sp. EAN1pec] Length = 239 Score = 98.6 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 52/184 (28%), Positives = 89/184 (48%), Gaps = 1/184 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E L ++DV GV +++C TL+ L ++G+ L +R+ ++ L Sbjct: 1 MIASVSGTVEVLSPGSAVVDVGGVGVLVWCTPSTLARL-RVGERARLATTLVVRETELTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R F +LQ GVG R+A VL + + ++ ++ + ++PGI K Sbjct: 60 YGFRDADERDVFEILQGAAGVGPRLAQAVLGVHSPDVIRRAVAEEDLATLTKVPGIGRKS 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI+ +L+ + SS V + A + + ALV LGY +A A Sbjct: 120 AQRIVLDLRDRLGPPSSPVPPQRAAAPPPAAADPRLGAAGEQVRDALVGLGYSAKEALDA 179 Query: 181 VVSV 184 VV+ Sbjct: 180 VVAA 183 >gi|224534918|ref|ZP_03675487.1| holliday junction DNA helicase RuvA [Borrelia spielmanii A14S] gi|224513858|gb|EEF84183.1| holliday junction DNA helicase RuvA [Borrelia spielmanii A14S] Length = 196 Score = 98.2 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 49/211 (23%), Positives = 96/211 (45%), Gaps = 21/211 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI KI G + E +++ + I L K+ D LF + R+++++L Sbjct: 1 MINKIYGKVIEKKESSLVLMTAVFEFEILVSAFCLDNF-KLSDKVELFTYLYTRENELKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ +R+ F L V G+G R A+ VLS I E ++I ++ +++A+I GI K+ Sbjct: 60 FGFLNSDERETFKRLIGVSGIGPRAALRVLSSIRYNEFKDAIDREDIELVAKIKGIGKKM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A ++ L+GK + + S ++V++G+ + ++ Sbjct: 120 AGKMFLHLQGKLL---------------INNELESSLFGFKELEESIVSMGFDRRIVSSK 164 Query: 181 VVSV--LKKEKNIADDSQ---IIRLALRAIS 206 + L + N+ D + + + L+ +S Sbjct: 165 LKEAFNLVEFSNLKDSEKEQFLFKEVLKRMS 195 >gi|225552109|ref|ZP_03773049.1| holliday junction DNA helicase RuvA [Borrelia sp. SV1] gi|225371107|gb|EEH00537.1| holliday junction DNA helicase RuvA [Borrelia sp. SV1] Length = 197 Score = 97.9 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 49/211 (23%), Positives = 96/211 (45%), Gaps = 20/211 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI KI G + E +++ + + L+ + D LF + R+++++L Sbjct: 1 MINKIHGKVIEKKESSLVLMTTVFDFELLVSAFCLANF-NLSDKVELFTYLYTRENELKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ +R+ F L V GVG R A+ VLS I E E+I ++ +++++I GI K+ Sbjct: 60 FGFLNSDEREIFKELIGVSGVGPRAALRVLSNIRYNEFKEAIDREDIELVSKIKGIGKKM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A ++ L+GK + S + + ++V++G+ + + Sbjct: 120 AGKMFLHLQGKLLINSELESTGLF--------------RFKELEESIVSMGFDRKIVNSK 165 Query: 181 VVSV--LKKEKNIADDSQ---IIRLALRAIS 206 + L + N+ D + + + L+ IS Sbjct: 166 IREAFNLAEFANLKDSEKEQFLFKEVLKRIS 196 >gi|227877607|ref|ZP_03995661.1| helicase Holliday junction [Lactobacillus crispatus JV-V01] gi|256844550|ref|ZP_05550036.1| Holliday junction DNA helicase RuvA [Lactobacillus crispatus 125-2-CHN] gi|256849061|ref|ZP_05554494.1| helicase Holliday junction [Lactobacillus crispatus MV-1A-US] gi|262047543|ref|ZP_06020498.1| Holliday junction DNA helicase RuvA [Lactobacillus crispatus MV-3A-US] gi|293381579|ref|ZP_06627566.1| Holliday junction DNA helicase RuvA [Lactobacillus crispatus 214-1] gi|312977890|ref|ZP_07789636.1| holliday junction DNA helicase RuvA [Lactobacillus crispatus CTV-05] gi|227862801|gb|EEJ70266.1| helicase Holliday junction [Lactobacillus crispatus JV-V01] gi|256613628|gb|EEU18831.1| Holliday junction DNA helicase RuvA [Lactobacillus crispatus 125-2-CHN] gi|256713837|gb|EEU28825.1| helicase Holliday junction [Lactobacillus crispatus MV-1A-US] gi|260572119|gb|EEX28684.1| Holliday junction DNA helicase RuvA [Lactobacillus crispatus MV-3A-US] gi|290921849|gb|EFD98864.1| Holliday junction DNA helicase RuvA [Lactobacillus crispatus 214-1] gi|310895197|gb|EFQ44265.1| holliday junction DNA helicase RuvA [Lactobacillus crispatus CTV-05] Length = 195 Score = 97.9 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 57/193 (29%), Positives = 91/193 (47%), Gaps = 11/193 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G I + YV++DV GV Y +Y P G +F+E +R I L Sbjct: 1 MYEYFEGVITVVTPSYVVVDVGGVGYKVYSPTPFAYTQ---GQKAKVFIEQVVRDTGITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S D+ F+ L SV G+G + AM +++ + L E+I K + + PG+ K Sbjct: 58 YGFQSQDDKGLFLKLLSVSGIGPKSAMAIMAAEDSNSLAEAIEQGEVKYLTRFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK + + + + N +P +A+ AL+ LGY Q + Sbjct: 118 ASQIVLDLKGKLGDYVARLDRPDNGEN--------VPPALNDALLALIALGYTQKEVDRI 169 Query: 181 VVSVLKKEKNIAD 193 + K N AD Sbjct: 170 TPKLEKVAANTAD 182 >gi|332295726|ref|YP_004437649.1| Holliday junction ATP-dependent DNA helicase ruvA [Thermodesulfobium narugense DSM 14796] gi|332178829|gb|AEE14518.1| Holliday junction ATP-dependent DNA helicase ruvA [Thermodesulfobium narugense DSM 14796] Length = 194 Score = 97.9 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 61/209 (29%), Positives = 95/209 (45%), Gaps = 20/209 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSC-LGKIGDFCTLFVETHMRQDQIR 59 MI I GN+ G E+ ++++ G+ Y+I P L K GD L++ + + Sbjct: 1 MIAYIVGNLIGFIENSIIVENNGLGYLIKLPPYLLEKNKNKKGDIIELYISHQFIGESQQ 60 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRI-TATELVESIILQNSKVIAQIPGISM 118 LFGF S D + F L + GVG ++A+ ++S T L+ + + + IPG+ Sbjct: 61 LFGFESISDLESFQKLLKIHGVGVKLALQIISSFKTNPTLILDLKNDHISSLKSIPGVGE 120 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K A RI ELKG S V D + + A+ ALV+LG +A Sbjct: 121 KTAKRIFEELKGCFPEFSEVKFDDRAKL----------------AVDALVSLGVSFQKAK 164 Query: 179 TAVVSVLKK--EKNIADDSQIIRLALRAI 205 V+ LK + NI II +A++ I Sbjct: 165 EVVIDTLKDVQDLNIIKSEDIITMAIQRI 193 >gi|216264161|ref|ZP_03436153.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 156a] gi|221217494|ref|ZP_03588965.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 72a] gi|224532548|ref|ZP_03673171.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi WI91-23] gi|224533942|ref|ZP_03674527.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi CA-11.2a] gi|225549276|ref|ZP_03770249.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 94a] gi|225549747|ref|ZP_03770712.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 118a] gi|226321147|ref|ZP_03796688.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 29805] gi|215980634|gb|EEC21441.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 156a] gi|221192772|gb|EEE18988.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 72a] gi|224512491|gb|EEF82869.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi WI91-23] gi|224512945|gb|EEF83311.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi CA-11.2a] gi|225369707|gb|EEG99155.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 118a] gi|225370134|gb|EEG99574.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 94a] gi|226233439|gb|EEH32179.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 29805] gi|312148088|gb|ADQ30747.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi JD1] gi|312149630|gb|ADQ29701.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi N40] Length = 197 Score = 97.9 bits (242), Expect = 8e-19, Method: Composition-based stats. Identities = 49/211 (23%), Positives = 96/211 (45%), Gaps = 20/211 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI KI G + E +++ + + L+ + D LF + R+++++L Sbjct: 1 MINKIHGKVIEKKESSLVLMTTVFEFELLVSAFCLANF-NLSDKVELFTYLYTRENELKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ +R+ F L V GVG R A+ VLS I E E+I ++ +++++I GI K+ Sbjct: 60 FGFLNSDEREIFKELIGVSGVGPRAALRVLSNIRYNEFKEAIDREDIELVSKIKGIGKKM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A ++ L+GK + S + + ++V++G+ + + Sbjct: 120 AGKMFLHLQGKLLINSELESTGLF--------------RFKELEESIVSMGFDRKIVNSK 165 Query: 181 VVSV--LKKEKNIADDSQ---IIRLALRAIS 206 + L + N+ D + + + L+ IS Sbjct: 166 IREAFNLAEFANLKDSEKEQFLFKEVLKRIS 196 >gi|296504911|ref|YP_003666611.1| Holliday junction DNA helicase motor [Bacillus thuringiensis BMB171] gi|296325963|gb|ADH08891.1| Holliday junction DNA helicase motor [Bacillus thuringiensis BMB171] Length = 150 Score = 97.5 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 36/148 (24%), Positives = 70/148 (47%), Gaps = 3/148 (2%) Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 + L+GF + +R F L V G+G + A+ +L+ ++V++I ++ K + + PG+ Sbjct: 1 MALYGFKTREERLLFTKLLGVSGIGPKGALAILASGQTGQVVQAIEHEDEKFLVKFPGVG 60 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 K A +++ +LKGK + D+ + + A+ AL LGY + + Sbjct: 61 KKTARQMILDLKGKLADVVPDAFVDLFSDTERFDEKKGSSAELDEALEALRALGYAEREV 120 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAI 205 + V +LK+ Q I+ AL + Sbjct: 121 SRVVPELLKE---SLTTDQYIKKALSLL 145 >gi|145652289|gb|ABP88205.1| hypothetical protein [Borrelia lonestari] Length = 195 Score = 97.5 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 53/211 (25%), Positives = 103/211 (48%), Gaps = 22/211 (10%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI KI G I E V+I V + ++ + L ++ + + ++R+++I+L Sbjct: 1 MINKIYGKIVEKRESSVVIVVLPFEFEVFVSSFCIEKL-ELLENIEILTYIYLRENEIKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ L+R+ F L +V G+G R A+ +LS I +E +I ++ ++I++I GI KI Sbjct: 60 FGFLNLLEREVFENLITVDGIGPRAALRILSGIKYSEFRNAIEREDIRLISKIKGIGNKI 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I +LKGK I + + + ++VN+G+ + + Sbjct: 120 AGKIFLKLKGKFIK----------------SDKLDLDIKFKDLEQSIVNMGFDRKLVISK 163 Query: 181 VVSVLKKEK--NIADDSQ---IIRLALRAIS 206 + +L ++ + + Q + R L+ +S Sbjct: 164 IKEILVTDEFLMLGEVEQEQFLFRETLKRLS 194 >gi|295692269|ref|YP_003600879.1| holliday junction ATP-dependent DNA helicase ruva [Lactobacillus crispatus ST1] gi|295030375|emb|CBL49854.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus crispatus ST1] Length = 195 Score = 97.5 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 56/193 (29%), Positives = 91/193 (47%), Gaps = 11/193 (5%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G I + YV++DV GV Y +Y P G +F+E +R I L Sbjct: 1 MYEYFEGVITVVTPSYVVVDVGGVGYKVYSPTPFAYTQ---GQKAKVFIEQVVRDTGITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF S D+ F+ L SV G+G + AM +++ + L E+I K + + PG+ K Sbjct: 58 YGFQSQDDKGLFLKLLSVSGIGPKSAMAIMAAEDSNSLAEAIEQGEVKYLTRFPGVGKKT 117 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 AS+I+ +LKGK + + + + + +P +A+ AL+ LGY Q + Sbjct: 118 ASQIVLDLKGKLGDYVARLDRPDNGED--------VPPALNDALLALIALGYTQKEVDRI 169 Query: 181 VVSVLKKEKNIAD 193 + K N AD Sbjct: 170 TPKLEKVAANTAD 182 >gi|325971233|ref|YP_004247424.1| Holliday junction ATP-dependent DNA helicase ruvA [Spirochaeta sp. Buddy] gi|324026471|gb|ADY13230.1| Holliday junction ATP-dependent DNA helicase ruvA [Spirochaeta sp. Buddy] Length = 210 Score = 97.5 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 51/216 (23%), Positives = 101/216 (46%), Gaps = 18/216 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLG----KIGDFCTLFVETHMRQD 56 MI I G++ + + V++ V Y++ +T S L + L R+D Sbjct: 1 MINAIIGDVVRVMDGEVILRAGYVEYMLSVSAQTASKLSNLSLEERRAVRLLTVLIHRED 60 Query: 57 QIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGI 116 + LFGF + +R+ F+ LQ+V G+G++ A+ +LS I+ L +++ N K+++ IPGI Sbjct: 61 SMSLFGFYDEAEREAFLQLQTVSGIGSKQALKILSGISVRNLAQALDTGNLKLLSSIPGI 120 Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 K +++ L+ + + S S + I+ALV++GY + + Sbjct: 121 GPKTGQKMILALRDVLVFEDEKSK-------TNGQRSQSKASQWSDIITALVDMGYDRRK 173 Query: 177 ATTAVVSVLKKEKNIA------DDSQII-RLALRAI 205 + S+ ++E D Q++ R A++ + Sbjct: 174 VEEVIDSLSEQESEAIGKLSHHDAEQLLFRSAVKLL 209 >gi|15594369|ref|NP_212157.1| Holliday junction DNA helicase RuvA [Borrelia burgdorferi B31] gi|195941763|ref|ZP_03087145.1| Holliday junction DNA helicase (ruvA) [Borrelia burgdorferi 80a] gi|218249661|ref|YP_002374557.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi ZS7] gi|226322062|ref|ZP_03797587.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi Bol26] gi|3914937|sp|P70827|RUVA_BORBU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|226725436|sp|B7J0W2|RUVA_BORBZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|2687899|gb|AAC66409.1| Holliday junction DNA helicase (ruvA) [Borrelia burgdorferi B31] gi|218164849|gb|ACK74910.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi ZS7] gi|226232652|gb|EEH31406.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi Bol26] Length = 197 Score = 97.5 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 49/211 (23%), Positives = 96/211 (45%), Gaps = 20/211 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI KI G + E +++ + + L+ + D LF + R+++++L Sbjct: 1 MINKIHGKVIEKKESSLVLMTTVFEFELLVSAFCLANF-NLSDKVELFTYLYTRENELKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ +R+ F L V GVG R A+ VLS I E E+I ++ +++++I GI K+ Sbjct: 60 FGFLNSDEREIFKELIGVSGVGPRAALRVLSNIRYNEFKEAIDKEDIELVSKIKGIGKKM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A ++ L+GK + S + + ++V++G+ + + Sbjct: 120 AGKMFLHLQGKLLINSELESTGLF--------------RFKELEESIVSMGFDRKIVNSK 165 Query: 181 VVSV--LKKEKNIADDSQ---IIRLALRAIS 206 + L + N+ D + + + L+ IS Sbjct: 166 IREAFNLAEFANLKDSEKEQFLFKEVLKRIS 196 >gi|223889207|ref|ZP_03623796.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 64b] gi|223885456|gb|EEF56557.1| holliday junction DNA helicase RuvA [Borrelia burgdorferi 64b] Length = 197 Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 48/211 (22%), Positives = 96/211 (45%), Gaps = 20/211 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI KI G + E +++ + + L+ + D LF + R+++++L Sbjct: 1 MINKIHGKVIEKKESSLVLMTTVFEFELLVSAFCLANF-NLSDKVELFTYLYTRENELKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ +R+ F L V GVG + A+ VLS I E E+I ++ +++++I GI K+ Sbjct: 60 FGFLNSDEREIFKELIGVSGVGPKAALRVLSNIRYNEFKEAIDKEDIELVSKIKGIGKKM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A ++ L+GK + S + + ++V++G+ + + Sbjct: 120 AGKMFLHLQGKLLINSELESTGLF--------------RFKELEESIVSMGFDRKIVNSK 165 Query: 181 VVSV--LKKEKNIADDSQ---IIRLALRAIS 206 + L + N+ D + + + L+ IS Sbjct: 166 IREAFNLAEFANLKDSEKEQFLFKEVLKRIS 196 >gi|314923584|gb|EFS87415.1| putative Holliday junction DNA helicase RuvA [Propionibacterium acnes HL001PA1] gi|314966629|gb|EFT10728.1| putative Holliday junction DNA helicase RuvA [Propionibacterium acnes HL082PA2] gi|314981358|gb|EFT25452.1| putative Holliday junction DNA helicase RuvA [Propionibacterium acnes HL110PA3] gi|315092024|gb|EFT64000.1| putative Holliday junction DNA helicase RuvA [Propionibacterium acnes HL110PA4] gi|315092849|gb|EFT64825.1| putative Holliday junction DNA helicase RuvA [Propionibacterium acnes HL060PA1] gi|315103631|gb|EFT75607.1| putative Holliday junction DNA helicase RuvA [Propionibacterium acnes HL050PA2] gi|315105680|gb|EFT77656.1| putative Holliday junction DNA helicase RuvA [Propionibacterium acnes HL030PA1] gi|327327453|gb|EGE69229.1| holliday junction DNA helicase RuvA [Propionibacterium acnes HL103PA1] Length = 158 Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 42/163 (25%), Positives = 78/163 (47%), Gaps = 9/163 (5%) Query: 46 TLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQ 105 +L +R++ + L+GF+ DR F L+Q+ GVG ++A ++S + A +L +I + Sbjct: 2 SLHTSLVVREESLTLYGFVEADDRDAFELVQTASGVGPKLAAAIMSVLDAAQLATAITEE 61 Query: 106 NSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS 165 + + ++PGI K A++++ ELK K +L+ + + Sbjct: 62 DDATLCRVPGIGRKGAAKMILELKDKVAALAPRGASASGATH-------VAAPWREQVAE 114 Query: 166 ALVNLGYGQDQATTAVVSV--LKKEKNIADDSQIIRLALRAIS 206 LV LG+ A AV V LK+ ++R ALR+++ Sbjct: 115 GLVGLGWSTKDAEKAVDKVVALKEADPAMSIGNLMRAALRSLA 157 >gi|148377489|ref|YP_001256365.1| Holliday junction DNA helicase motor protein [Mycoplasma agalactiae PG2] gi|229560106|sp|A5IY12|RUVA_MYCAP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|148291535|emb|CAL58921.1| Holliday junction DNA helicase ruvA [Mycoplasma agalactiae PG2] Length = 198 Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 86/206 (41%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI G I + ++ + QG+ Y + P +I C L++ + Q Sbjct: 1 MILYRIGEIIHKHNSNIIFESQGIGYSLILPDP---ERVEIKQKCKLYLFEIKNEYQYAT 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 + F +R F+ L S+ G+G R A +L+ ++V I N++ + +IP ++ ++ Sbjct: 58 YAFKDFKERLLFVDLISLNGIGPRAAFNILN-FGFEKVVALIAEGNAEALIEIPYLNPRM 116 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A I+ EL+ K + S K+ A I + L +G+ Q A Sbjct: 117 ARLIVAELQAKWSKMIS---------PKDAAKINETTNTLSEVKETLKMVGFKTKQIDGA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + + + D ++I A++ +S Sbjct: 168 LSKISSTD----DVEKMIEEAIKLMS 189 >gi|219685405|ref|ZP_03540224.1| holliday junction DNA helicase RuvA [Borrelia garinii Far04] gi|219673178|gb|EED30198.1| holliday junction DNA helicase RuvA [Borrelia garinii Far04] Length = 196 Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 46/211 (21%), Positives = 95/211 (45%), Gaps = 21/211 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI KI G + E +++ + + L+ K+ D LF + +++++L Sbjct: 1 MINKIHGKVIEKKESSLVLMTTVFEFELLVSAFCLANF-KLSDKVELFTYLYAGENELKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ +R+ F L V G+G R A+ VLS I E ++I ++ +++++I GI K+ Sbjct: 60 FGFLNSDERETFKSLIGVSGIGPRAALRVLSNIRYNEFKDAIDREDVELVSKIKGIGKKM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A ++ L+GK + + S ++V++G+ + + Sbjct: 120 AGKMFLHLQGKLL---------------INNDLESSLFGFKELEESIVSMGFDRKIVNSK 164 Query: 181 VVSV--LKKEKNIADDSQ---IIRLALRAIS 206 + L + N+ D + + + L+ +S Sbjct: 165 LKEACDLIEFSNLKDSEKEQFLFKEVLKRMS 195 >gi|304373060|ref|YP_003856269.1| Holliday junction ATP-dependent DNA helicase r [Mycoplasma hyorhinis HUB-1] gi|304309251|gb|ADM21731.1| Holliday junction ATP-dependent DNA helicase r [Mycoplasma hyorhinis HUB-1] Length = 213 Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 39/202 (19%), Positives = 83/202 (41%), Gaps = 12/202 (5%) Query: 7 GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD 66 G I ++Y++++ V ++IY P + + +++ + + +GF + Sbjct: 7 GKIVSKSKNYLILEQNYVGHLIYVPNIDRF---EKDESKKIYIYKYENEYSKTTYGFENF 63 Query: 67 LDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 +R F L SVQG+G + A+ +L++ + I + K I++ P +++K A +I+ Sbjct: 64 RERILFEDLISVQGIGPKTAIAILNQ-GWETAMSYIADGDWKRISEFPYLNVKNAKQIVF 122 Query: 127 ELKGKAISLSSVVQQDMS--------CVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 E + K I + Q+ ++ + A L LG+ + Q Sbjct: 123 EFQNKYIKIFQNYQKTLNKDKVINVEEEVTFSSKTVLEDKIAKELEDTLKILGFQKKQIN 182 Query: 179 TAVVSVLKKEKNIADDSQIIRL 200 A+ V + I+L Sbjct: 183 YALSKVQANNDFELLVEEAIKL 204 >gi|111114845|ref|YP_709463.1| Holliday junction DNA helicase RuvA [Borrelia afzelii PKo] gi|216264081|ref|ZP_03436075.1| holliday junction DNA helicase RuvA [Borrelia afzelii ACA-1] gi|123047085|sp|Q0SPE1|RUVA_BORAP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|110890119|gb|ABH01287.1| Holliday junction DNA helicase [Borrelia afzelii PKo] gi|215980125|gb|EEC20947.1| holliday junction DNA helicase RuvA [Borrelia afzelii ACA-1] Length = 196 Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 48/211 (22%), Positives = 96/211 (45%), Gaps = 21/211 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI KI G + E +++ + + L+ K+ D LF + ++++++L Sbjct: 1 MINKIYGKVIEKKESSLVLMTAVFEFELLVSAFCLANF-KLLDKVELFTYLYTKENELKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ +R+ F L V G+G R A+ VLS I E ++I ++ ++IA+I GI K+ Sbjct: 60 FGFLNSDERETFKSLIGVSGIGPRAALRVLSNIRYNEFKDAIDREDIELIAKIKGIGKKM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A ++ L+GK + + S ++V++G+ + + Sbjct: 120 AGKMFLHLQGKLL---------------INNELESSLFRFKELEESIVSMGFDRKIVNSK 164 Query: 181 VVSV--LKKEKNIADDSQ---IIRLALRAIS 206 + L + N+ D + + + L+ +S Sbjct: 165 LKEAFNLVEFSNLKDSEKEQFLFKEVLKRMS 195 >gi|219684886|ref|ZP_03539828.1| holliday junction DNA helicase RuvA [Borrelia garinii PBr] gi|219671831|gb|EED28886.1| holliday junction DNA helicase RuvA [Borrelia garinii PBr] Length = 196 Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 47/211 (22%), Positives = 96/211 (45%), Gaps = 21/211 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI KI G + E +++ + + L+ K+ D LF + R+++++L Sbjct: 1 MINKIHGKVIEKKESSLVLMTTVFEFELLVSAFCLANF-KLSDKVELFTYLYARENELKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ +R+ F L V G+G R A+ VLS I E ++I ++ +++++I GI K+ Sbjct: 60 FGFLNSDEREIFKSLIGVSGIGPRAALRVLSNIRYNEFKDAIDREDVELVSKIKGIGKKM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A ++ L+GK + + S ++V++G+ + + Sbjct: 120 AGKMFLHLQGKLL---------------INNELESSLFGFKELEESIVSMGFDRKIVNSK 164 Query: 181 VVSV--LKKEKNIADDSQ---IIRLALRAIS 206 + L + N+ D + + + L+ +S Sbjct: 165 LKEACDLIEFSNLKDSEKEQFLFKEVLKRMS 195 >gi|317177676|dbj|BAJ55465.1| Holliday junction DNA helicase motor protein [Helicobacter pylori F16] Length = 183 Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 89/205 (43%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + V I+VQGV Y + +RT S L + G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMRT-SALLQAGQKVRLKILQVIKEDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETSPARNEVFLALESLGFKSAE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INKVLKTLKPHLSTEAAIKEALQQL 181 >gi|291296179|ref|YP_003507577.1| Holliday junction DNA helicase RuvA [Meiothermus ruber DSM 1279] gi|290471138|gb|ADD28557.1| Holliday junction DNA helicase RuvA [Meiothermus ruber DSM 1279] Length = 193 Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 95/205 (46%), Gaps = 13/205 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ +KG + V++ V GV CP TL+ L + G L + +R+D + L Sbjct: 1 MVRYLKGTVLKKSPSSVVLLVGGVGLEASCPASTLAQLSE-GQEAALHTKLVVREDDLSL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGF + + F LL SV GVG +VA+ +LS T L ++ + +++ G+ K+ Sbjct: 60 FGFADERSLELFELLLSVSGVGPKVALNLLSSQTPALLARALAEGDLRLLTAAQGVGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A RI EL+GK + S A AL+ LG+ + Q + Sbjct: 120 AERIALELRGKVP-----------AHLMGEGGRLVHSSQTEEAELALITLGFREGQVRSI 168 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V + +K A ++I+LAL+A+ Sbjct: 169 VAEIAQKNP-GAGTQELIKLALKAL 192 >gi|282852794|ref|ZP_06262136.1| holliday junction DNA helicase RuvA, N-terminal domain protein [Lactobacillus gasseri 224-1] gi|282556536|gb|EFB62156.1| holliday junction DNA helicase RuvA, N-terminal domain protein [Lactobacillus gasseri 224-1] Length = 122 Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + + YV++DV G+ Y I CP T++VE +R I L Sbjct: 1 MFEYLKGIVAKIDPAYVVLDVNGIGYKILCPTPYSYQ---ENQPATIYVEQVVRDTGITL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GFLS D++ F+ L SV G+G + A+ +++ L +I K + + PG+ + Sbjct: 58 YGFLSLEDKELFLKLLSVSGIGPKSAVAIMAAEDTDSLASAIQNGEVKYLTRFPGVGKR 116 >gi|330723322|gb|AEC45692.1| Holliday junction DNA helicase RuvA [Mycoplasma hyorhinis MCLD] Length = 213 Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 39/202 (19%), Positives = 83/202 (41%), Gaps = 12/202 (5%) Query: 7 GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD 66 G I ++Y++++ V ++IY P + + +++ + + +GF + Sbjct: 7 GKIVSKSKNYLILEQNYVGHLIYVPNIDRF---EKDESKKIYIYKYENEYSKTTYGFENF 63 Query: 67 LDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 +R F L SVQG+G + A+ +L++ + I + K I++ P +++K A +I+ Sbjct: 64 RERILFEDLISVQGIGPKTAIAILNQ-GWETAMSYIADGDWKKISEFPYLNVKNAKQIVF 122 Query: 127 ELKGKAISLSSVVQQDMS--------CVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 E + K I + Q+ ++ + A L LG+ + Q Sbjct: 123 EFQNKYIKIFQNYQKTLNKDKVINVEEEVTFSSKTVLEDKIAKELEDTLKILGFQKKQIN 182 Query: 179 TAVVSVLKKEKNIADDSQIIRL 200 A+ V + I+L Sbjct: 183 YALSKVQANNDFELLVEEAIKL 204 >gi|51598286|ref|YP_072474.1| Holliday junction DNA helicase RuvA [Borrelia garinii PBi] gi|81610281|sp|Q662Y9|RUVA_BORGA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|51572857|gb|AAU06882.1| Holliday junction DNA helicase [Borrelia garinii PBi] Length = 196 Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 47/211 (22%), Positives = 96/211 (45%), Gaps = 21/211 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI KI G + E +++ + + L+ K+ D LF + R+++++L Sbjct: 1 MINKIHGKVIEKKESSLVLMTTVFEFELLVSAFCLANF-KLSDKVELFTYLYARENELKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ +R+ F L V G+G R A+ VLS I + E+I ++ +++++I GI K+ Sbjct: 60 FGFLNSDERETFKSLIGVSGIGPRAALRVLSNIRYNDFKEAIDREDVELVSKIKGIGKKM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A ++ L+GK + + S ++V++G+ + + Sbjct: 120 AGKMFLHLQGKLL---------------INNELESSLFGFKELEESIVSMGFDRKIVNSK 164 Query: 181 VVSV--LKKEKNIADDSQ---IIRLALRAIS 206 + L + N+ D + + + L+ +S Sbjct: 165 LKEACDLIEFSNLKDSEKEQFLFKEVLKRMS 195 >gi|207092382|ref|ZP_03240169.1| Holliday junction DNA helicase motor protein [Helicobacter pylori HPKX_438_AG0C1] Length = 183 Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 89/205 (43%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + V I+VQGV Y + +RT S L + G L + +R+D L Sbjct: 1 MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMRT-SALLEAGQKVRLKILQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DENKPARNEVFLALESLGFKSAE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INKVLKTLKPHLSIEAAIKEALQQL 181 >gi|315586830|gb|ADU41211.1| crossover junction ATP-dependent DNA helicase RuvA [Helicobacter pylori 35A] Length = 183 Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 89/205 (43%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + V I+VQGV Y + +RT S L + G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMRT-SALLQAGQKARLKILQVIKEDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETGPACNEVFLALESLGFKSAE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INKVLKTLKPNLSTEAAIKEALQQL 181 >gi|217034714|ref|ZP_03440116.1| hypothetical protein HP9810_896g11 [Helicobacter pylori 98-10] gi|216942827|gb|EEC22324.1| hypothetical protein HP9810_896g11 [Helicobacter pylori 98-10] Length = 183 Score = 95.2 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + I+VQGV Y + +RT S L + G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-SALLQAGQKTRLKILQVIKEDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETSPVRNEVFLALESLGFKSAE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INKVLKTLKPNLSTETAIKEALQQL 181 >gi|108563288|ref|YP_627604.1| Holliday junction DNA helicase RuvA [Helicobacter pylori HPAG1] gi|123073768|sp|Q1CSZ2|RUVA_HELPH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|107837061|gb|ABF84930.1| Holliday junction DNA helicase [Helicobacter pylori HPAG1] Length = 183 Score = 95.2 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + I+VQGV Y + +RT S L + G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-SALLETGQKVRLKILQVIKEDANLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DENRPARNEVFLALESLGFKSAE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INKVLKTLKPNLSIEAAIKEALQQL 181 >gi|237755451|ref|ZP_04584075.1| holliday junction DNA helicase RuvA [Sulfurihydrogenibium yellowstonense SS-5] gi|237692383|gb|EEP61367.1| holliday junction DNA helicase RuvA [Sulfurihydrogenibium yellowstonense SS-5] Length = 179 Score = 95.2 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 48/190 (25%), Positives = 85/190 (44%), Gaps = 33/190 (17%) Query: 15 DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74 ++++I+ G ++ P + ++ +RQ+ ++L GF+S+ +R F+ Sbjct: 15 NHIVIEKLGFGLLVEVPDS------EKFKENIVYTYLLVRQEDVKLLGFVSEEERDLFLK 68 Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134 L + GVG + A+ ++S + E +E I + + +I GI K A RI+ ELKGK Sbjct: 69 LIQIHGVGVKHALSIISNFSVEEFIEIIENGDVDKLTEIQGIGNKTAQRIIVELKGKIE- 127 Query: 135 LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADD 194 S +SALVNLGY + ++ VLK+ K+ Sbjct: 128 -------------------FSESDELNQLVSALVNLGYDKKESVKVAKKVLKETKD---- 164 Query: 195 SQIIRLALRA 204 I+ AL+ Sbjct: 165 ---IKEALKK 171 >gi|254779490|ref|YP_003057595.1| Holliday junction DNA helicase RuvA [Helicobacter pylori B38] gi|254001401|emb|CAX29394.1| Holliday junction ATP-dependent DNA helicase ruvA [Helicobacter pylori B38] Length = 183 Score = 94.8 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 89/205 (43%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + I+VQGV Y + +RT + L ++G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-AALLQVGQKARLKILQVIKEDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DENRPARNEVFLALESLGFKSTE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INKVLKTLKPNLSIETAIKEALQQL 181 >gi|210135073|ref|YP_002301512.1| Holliday junction DNA helicase RuvA [Helicobacter pylori P12] gi|210133041|gb|ACJ08032.1| holliday junction DNA helicase [Helicobacter pylori P12] Length = 183 Score = 94.8 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 89/205 (43%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + V I+VQGV Y + +RT S L + G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMRT-SALLQAGQKARLKILQVIKEDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DENRPARNEVFLALESLGFKSTE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INQVLKTLKPNLSIEAAIKEALQQL 181 >gi|193216717|ref|YP_001999959.1| Holliday junction DNA helicase RuvA [Mycoplasma arthritidis 158L3-1] gi|254767376|sp|B3PMK3|RUVA_MYCA5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|193002040|gb|ACF07255.1| Holliday junction DNA helicase motor protein [Mycoplasma arthritidis 158L3-1] Length = 203 Score = 94.4 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 42/200 (21%), Positives = 81/200 (40%), Gaps = 8/200 (4%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI G I + +Y+++D G +IY P + K + +F+ + Sbjct: 1 MIIYKYGKIMHVNTNYLILDHNGEGDLIYAPNISRF---KKDELRKIFISQIENEYTKVT 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + + F L +QG+G + A+ +L+ I ++ + N + +IP +S KI Sbjct: 58 YGFDNFKELVIFEDLIEIQGLGPKTAISILN-IGWENVINYVATANKGALGKIPYVSSKI 116 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A+ I+ + K + D + K A + F + + LG+ Q Q A Sbjct: 117 ANAIIFSYQDKYAKFMKKLTSDEAAKIKVPASSENENKF----LDTMKMLGFKQQQIKFA 172 Query: 181 VVSVLKKEKNIADDSQIIRL 200 + + + I+L Sbjct: 173 LDKIELNDDIETCVENAIKL 192 >gi|224532061|ref|ZP_03672693.1| holliday junction DNA helicase RuvA [Borrelia valaisiana VS116] gi|224511526|gb|EEF81932.1| holliday junction DNA helicase RuvA [Borrelia valaisiana VS116] Length = 196 Score = 94.4 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 48/211 (22%), Positives = 96/211 (45%), Gaps = 21/211 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI KI G + E +++ + + L+ K+ D LF + R+++++L Sbjct: 1 MINKIHGKVVEKKESSLVLMTTVFEFELLVSAFCLANF-KLSDKVELFTYLYTRENELKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ +R+ F L V G+G R A+ VLS I E ++I ++ +++A+I GI K+ Sbjct: 60 FGFLNSDERETFKGLIGVSGIGPRAALRVLSNIRYNEFKDAIDREDVELVAKIKGIGKKM 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A ++ L+GK + + S +++++G+ + + Sbjct: 120 AGKMFLHLQGKLL---------------INNELESNLFRFKELEESIISMGFDRKIVNSK 164 Query: 181 VVSV--LKKEKNIADDSQ---IIRLALRAIS 206 + L + N+ D + + + L+ IS Sbjct: 165 LKEAYNLVEFSNLKDSEKEQFLFKEVLKRIS 195 >gi|308189833|ref|YP_003922764.1| Holliday junction DNA helicase [Mycoplasma fermentans JER] gi|319777048|ref|YP_004136699.1| holliday junction ATP-dependent DNA helicase ruva [Mycoplasma fermentans M64] gi|238809832|dbj|BAH69622.1| hypothetical protein [Mycoplasma fermentans PG18] gi|307624575|gb|ADN68880.1| Holliday junction DNA helicase [Mycoplasma fermentans JER] gi|318038123|gb|ADV34322.1| Holliday junction ATP-dependent DNA helicase RuvA [Mycoplasma fermentans M64] Length = 200 Score = 94.4 bits (233), Expect = 9e-18, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 81/206 (39%), Gaps = 17/206 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ G I ++ + QGV Y I P + L++ L Sbjct: 1 MVLYRIGEIVYKNNQNLIFESQGVGYSIIFPDHAR---VEAKQKMKLYLYEIRNDYTWSL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R FM L ++ G+G RVA +L+ ++ I L + +IP I+ +I Sbjct: 58 YGFKDFKERLLFMDLINLNGIGPRVAFNILN-QGWEKVASLIALGKVDHLIEIPYINPRI 116 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A ++ EL+ K +++ ++ + A L LG+ Q +A Sbjct: 117 ARIVVGELQDKWAKITNT---------QDAQKQVKNSNLLSEAKETLKMLGFKAAQIDSA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 + V + D +I A++ IS Sbjct: 168 LTKVELNQ----DVESMIEEAIKFIS 189 >gi|308183035|ref|YP_003927162.1| Holliday junction DNA helicase RuvA [Helicobacter pylori PeCan4] gi|308065220|gb|ADO07112.1| Holliday junction DNA helicase RuvA [Helicobacter pylori PeCan4] Length = 183 Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 89/205 (43%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + V I+VQGV Y + +RT + L + G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMRT-AALLQAGQKARLKILQVIKEDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETKPMHNEVFLALESLGFKSAE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INKVLKTLKPHLSTEAAIKEALQQL 181 >gi|261838266|gb|ACX98032.1| Holliday junction DNA helicase [Helicobacter pylori 51] Length = 183 Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + I+VQGV Y + +RT S L + G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-SALLQAGQKARLKILQVIKEDVHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETSPARNEVFLALESLGFKSAE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INKVLKTLKPKLSTEAAIKEALQQL 181 >gi|317182188|dbj|BAJ59972.1| Holliday junction DNA helicase motor protein [Helicobacter pylori F57] Length = 183 Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + I+VQGV Y + +RT S L + G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-SALLQAGQKVRLKILQVIKEDVHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETGPMRNEVFLALESLGFKSAE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INKVLKTLKPHLSTEAAIKEALQQL 181 >gi|188997620|ref|YP_001931871.1| Holliday junction DNA helicase RuvA [Sulfurihydrogenibium sp. YO3AOP1] gi|188932687|gb|ACD67317.1| Holliday junction DNA helicase RuvA [Sulfurihydrogenibium sp. YO3AOP1] Length = 179 Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 46/192 (23%), Positives = 88/192 (45%), Gaps = 29/192 (15%) Query: 15 DYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFML 74 ++++I+ G ++ P + ++ +RQ+ +RL GF+S+ +R F+ Sbjct: 15 NHIVIEKLGFGLLVEVPDS------EKFKENIVYTYLLVRQEDVRLLGFVSEEERDLFLK 68 Query: 75 LQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS 134 L + GVG + A+ ++S + E +E + + + +I GI K A RI+ ELKGK Sbjct: 69 LIQIHGVGVKHALNIISNFSVEEFIEIMENGDVDKLTEIQGIGNKTAQRIIVELKGKIE- 127 Query: 135 LSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADD 194 + +SALVNLGY + ++ V+K+ K+I Sbjct: 128 -------------------FNESDELSQLVSALVNLGYDKKESVNVAKKVIKETKDIK-- 166 Query: 195 SQIIRLALRAIS 206 + ++ A+ +S Sbjct: 167 -EALKKAISMLS 177 >gi|15645501|ref|NP_207676.1| Holliday junction DNA helicase RuvA [Helicobacter pylori 26695] gi|3122834|sp|O25549|RUVA_HELPY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|2314020|gb|AAD07932.1| Holliday junction DNA helicase (ruvA) [Helicobacter pylori 26695] Length = 183 Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 89/205 (43%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + V I+VQGV Y + +RT + L + G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMRT-AALLEAGQKARLKILQVIKEDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEEGEKILFERLLKINGVGGRIALAILSSFSPNEFESIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DENRPARNEVFLALESLGFKSAE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INQVLKTLKPNLSIEAAIKEALQQL 181 >gi|317180262|dbj|BAJ58048.1| Holliday junction DNA helicase motor protein [Helicobacter pylori F32] Length = 183 Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + I+VQGV Y + +RT S L + G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-SALLQAGQKARLKILQVIKEDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETSPTRNEVFLALESLGFKSAE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INKVLKTLKPHLSTEVAIKEALQQL 181 >gi|297380083|gb|ADI34970.1| Holliday junction DNA helicase RuvA [Helicobacter pylori v225d] Length = 183 Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + I+VQGV Y + +RT S L + G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-SALLQAGQKARLKILQVIKEDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFESIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETSPVRNEVFLALESLGFKSAE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INKVLKTLKPHLSTEVAIKEALQQL 181 >gi|269792533|ref|YP_003317437.1| RuvA domain-containing protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100168|gb|ACZ19155.1| RuvA domain protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 194 Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 13/169 (7%) Query: 37 CLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITAT 96 + G+ L V + I L+GF D +R+ F+LL GVG ++AMG+L+ + Sbjct: 36 EMASPGESIRLPVYLSVSDSGISLYGFGDDHERRVFLLLLQASGVGCKMAMGILNSMDKG 95 Query: 97 ELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSM 156 E++++I + I++ G+ K A RI ELK K SL + V+ Sbjct: 96 EVLDAIASGDVARISRAQGVGPKRAERICFELKDKVTSLGIPRGNSGALVSTGS------ 149 Query: 157 PSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + AL+ LG+ + +A A+ V K +++ +D ++R ALR + Sbjct: 150 ------ILEALMGLGFSRGEAAMALGEVRSKGEDLPEDQLLLR-ALRVL 191 >gi|308063716|gb|ADO05603.1| Holliday junction DNA helicase RuvA [Helicobacter pylori Sat464] Length = 183 Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + I+VQGV Y + +RT S L + G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-SALLQTGQKARLKILQVIKEDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFESIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETKPMHNEVFLALESLGFKSAE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INKVLKTLKPHLSTEAAIKEALQQL 181 >gi|217032932|ref|ZP_03438407.1| hypothetical protein HPB128_147g5 [Helicobacter pylori B128] gi|298736165|ref|YP_003728691.1| Holliday junction ATP-dependent DNA helicase RuvA [Helicobacter pylori B8] gi|216945342|gb|EEC24014.1| hypothetical protein HPB128_147g5 [Helicobacter pylori B128] gi|298355355|emb|CBI66227.1| Holliday junction ATP-dependent DNA helicase ruvA [Helicobacter pylori B8] Length = 183 Score = 93.2 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 89/205 (43%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + I+VQGV Y + +RT S L ++G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-SALLEVGQKARLKILQVIKEDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFESIIATKEVKKLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DENRPARNEVFLALESLGFKSTE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INKVLKTLKPHLSIEAAIKEALQQL 181 >gi|317012687|gb|ADU83295.1| Holliday junction DNA helicase RuvA [Helicobacter pylori Lithuania75] Length = 183 Score = 93.2 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + I+VQGV Y + +RT S L + G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-SALLQAGQKARLKILQVIKEDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFESIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DENRPARNEVFLALESLGFKSTE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INQVLKTLKPNLSIEAAIKEALQQL 181 >gi|188527709|ref|YP_001910396.1| Holliday junction DNA helicase RuvA [Helicobacter pylori Shi470] gi|229560035|sp|B2UU34|RUVA_HELPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|188143949|gb|ACD48366.1| Holliday junction DNA helicase motor protein [Helicobacter pylori Shi470] gi|308062206|gb|ADO04094.1| Holliday junction DNA helicase RuvA [Helicobacter pylori Cuz20] Length = 183 Score = 93.2 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + I+VQGV Y + +RT S L + G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-SALLQAGQKARLKILQVIKEDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFESIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETKPMHNEVFLALESLGFKSAE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INKVLKTLKPHLSTEAAIKEALQQL 181 >gi|307637571|gb|ADN80021.1| Holliday junction DNA helicase [Helicobacter pylori 908] gi|325996162|gb|ADZ51567.1| Holliday junction DNA helicase [Helicobacter pylori 2018] gi|325997758|gb|ADZ49966.1| Holliday junction DNA helicase [Helicobacter pylori 2017] Length = 183 Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + I+VQGV Y + +RT + L + G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-AALLQAGQKARLKILQVIKEDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALTILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DENRPARNEVFLALESLGFKSAE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INPVLKTLKPNLSIEAAIKEALQQL 181 >gi|1941919|emb|CAA63622.1| orf4 [Bacillus subtilis subsp. subtilis str. 168] Length = 105 Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 3/108 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI +KG I+ + Y++I+ G+ Y I+ P + K T+F H+R+D L Sbjct: 1 MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPNPFIY---KERSQETIFTYHHIREDAFSL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSK 108 +GF + ++ F L +V G+G + A+ +L ++++I ++ Sbjct: 58 YGFSTREEKALFTKLLNVTGIGPKGALAILGSGDPGAVIQAIENEDEA 105 >gi|308184664|ref|YP_003928797.1| Holliday junction DNA helicase RuvA [Helicobacter pylori SJM180] gi|308060584|gb|ADO02480.1| Holliday junction DNA helicase RuvA [Helicobacter pylori SJM180] Length = 183 Score = 92.5 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + I+VQGV Y + +RT + L + G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-AALLQAGQKARLKILQVIKEDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DENRPVRNEVFLALESLGFKSTE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INQVLKTLKPHLSIEAAIKEALQQL 181 >gi|317011094|gb|ADU84841.1| Holliday junction DNA helicase RuvA [Helicobacter pylori SouthAfrica7] Length = 183 Score = 92.5 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + V I+VQGV Y + +RT S L + G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMRT-SALLQAGQKARLKILQVIKEDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKKLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETKPVYNEVFLALESLGFKSAE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + +LKK K + I+ AL+ + Sbjct: 157 INPILKKLKPNLGIEEAIKEALQQL 181 >gi|15611882|ref|NP_223533.1| Holliday junction DNA helicase RuvA [Helicobacter pylori J99] gi|6685958|sp|Q9ZKW9|RUVA_HELPJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|4155386|gb|AAD06396.1| HOLLIDAY JUNCTION DNA HELICASE [Helicobacter pylori J99] Length = 183 Score = 92.5 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + I+VQGV Y + +RT + L + G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-AALLQTGQKARLKILQVIKEDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DENRPARNEVFLALESLGFKSAE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INPVLKTLKPHLSIEAAIKEALQQL 181 >gi|332673720|gb|AEE70537.1| crossover junction ATP-dependent DNA helicase RuvA [Helicobacter pylori 83] Length = 183 Score = 92.5 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + I+VQGV Y + +RT S L + G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-SALLQAGQKVRLKILQVIKEDVHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETKPMHNEVFLALESLGFKSAE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INKVLKTLKPHLSIEAAIKEALQQL 181 >gi|109947771|ref|YP_664999.1| Holliday junction DNA helicase RuvA [Helicobacter acinonychis str. Sheeba] gi|123066165|sp|Q17WH6|RUVA_HELAH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|109714992|emb|CAK00000.1| holliday junction DNA helicase [Helicobacter acinonychis str. Sheeba] Length = 183 Score = 92.1 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 24/175 (13%) Query: 31 PIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVL 90 +RT S L + G L + +++D L+GFL + ++ F L + GVG R+A+ +L Sbjct: 31 SMRTASML-QTGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGVGGRIALAIL 89 Query: 91 SRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQ 150 S + E I + K + Q+PGI K+A +IM +L G I Sbjct: 90 SSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQ---------------- 133 Query: 151 AHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A AL +LG+ + + +LKK K + I+ AL+ + Sbjct: 134 ---DETKPVHNEAFLALESLGFKSAE----INPILKKLKPNLSVEEAIKEALQQL 181 >gi|261839678|gb|ACX99443.1| Holliday junction DNA helicase motor protein [Helicobacter pylori 52] Length = 183 Score = 91.7 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 89/205 (43%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + V I+VQGV Y + +R S L ++G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMR-ASALLQMGQKARLKILQVIKEDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFESIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETSPACNEVFLALESLGFKSTE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INKVLKTLKPNLSIEAAIKEALQQL 181 >gi|15829128|ref|NP_326488.1| Holliday junction DNA helicase motor protein [Mycoplasma pulmonis UAB CTIP] gi|20455257|sp|Q98PR2|RUVA_MYCPU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|14090072|emb|CAC13830.1| HOLLIDAY JUNCTION DNA HELICASE RUVA [Mycoplasma pulmonis] Length = 197 Score = 91.7 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 83/200 (41%), Gaps = 18/200 (9%) Query: 7 GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD 66 G I + + Y++ + Y I T + + L++ + Q L+GF Sbjct: 7 GKIIHVNKKYIIFESDSAGYTINI---TRAENFEKDRTLKLYIYELSNEYQKTLYGFTHF 63 Query: 67 LDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 +R F L S+ G+G R+A+ +L+ ++ I N + +++ P I++K +I+ Sbjct: 64 KERVLFEDLISINGIGPRIALILLND-GWEKIASLIANGNWETLSRYPYINVKNCHQIIF 122 Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLK 186 EL+ K ++ S +A L LG+ ++Q A+ S Sbjct: 123 ELQNKWAKFLEKDEKVPSA----------NIQNISDATETLKMLGFKREQIKYALESANL 172 Query: 187 KEKNIADDSQIIRLALRAIS 206 ++ D ++ A++ IS Sbjct: 173 QD----DVETLVENAIKKIS 188 >gi|240047398|ref|YP_002960786.1| Holliday junction DNA helicase RuvA [Mycoplasma conjunctivae HRC/581] gi|239984970|emb|CAT04963.1| Holliday junction ATP-dependent DNA helicase r [Mycoplasma conjunctivae] Length = 217 Score = 91.7 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 48/217 (22%), Positives = 88/217 (40%), Gaps = 21/217 (9%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLF 61 I KI G I ++Y++++ G Y+IY P + + + ++V + Sbjct: 3 IYKI-GKIVSKNKNYLILEQAGNGYLIYTPN--IERFNR-DEKRKIYVYEFENDYSKITY 58 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF + +R F L S+QG+G + AM L+ I ++++ I + K +++I IS + A Sbjct: 59 GFDNFKERILFEDLISIQGIGPKTAMIALN-IGWQKIIDYIAAGDWKSLSKIQYISDRNA 117 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS------------MPSFAINAISALVN 169 +I+ E + K L + + AI L Sbjct: 118 KQIIFEFQKKYTKLIESAKNQTTTQENNTKQADEVIDEHLMQKTLLEQKTAIELEDTLKI 177 Query: 170 LGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 LG+ + Q A+ +V E +I A++ IS Sbjct: 178 LGFQKRQINYALANVEPTE----SFEHLIEEAIKLIS 210 >gi|317014289|gb|ADU81725.1| Holliday junction DNA helicase RuvA [Helicobacter pylori Gambia94/24] Length = 183 Score = 91.3 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + I+VQGV Y + +RT + L + G L + +++D L Sbjct: 1 MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRT-AALLQAGQKARLKILQVIKEDANLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEEGEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DENRPARNEVFLALESLGFKSAE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INPVLKTLKPHLSIEAAIKEALQQL 181 >gi|208434791|ref|YP_002266457.1| Holliday junction DNA helicase [Helicobacter pylori G27] gi|226698733|sp|B5Z7P2|RUVA_HELPG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|208432720|gb|ACI27591.1| Holliday junction DNA helicase [Helicobacter pylori G27] Length = 183 Score = 90.9 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 24/205 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + I+VQGV Y + +RT + L + G L + +++D L Sbjct: 1 MIVGLIGVVEKISALETHIEVQGVVYGVQVSMRT-AALLQAGQKARLKILQVIKEDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GFL + ++ F L + GVG R+A+ +LS + E I + K + Q+PGI K+ Sbjct: 60 YGFLEEGEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKL 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +IM +L G I AL +LG+ + Sbjct: 120 ADKIMVDLIGFFIQ-------------------DETKPMHNEVFLALESLGFKSAE---- 156 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + VLK K I+ AL+ + Sbjct: 157 INKVLKTLKPSLSIEAAIKEALQQL 181 >gi|254821998|ref|ZP_05226999.1| Holliday junction DNA helicase RuvA [Mycobacterium intracellulare ATCC 13950] Length = 105 Score = 90.5 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 1/106 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +I+ GV Y + TLS L + G L +R+D + L Sbjct: 1 MIAAVRGEVLEVALDHAVIEAAGVGYRVNATPSTLSTL-RTGTEARLITAMIVREDSMTL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQN 106 +GF R F+ L SV GVG R+AM L+ A L +++ + Sbjct: 60 YGFTDTDTRDLFLTLLSVSGVGPRLAMATLAVHDAGALRQALHDGD 105 >gi|308190042|ref|YP_003922973.1| Holliday junction DNA helicase RuvA [Mycoplasma fermentans JER] gi|307624784|gb|ADN69089.1| Holliday junction DNA helicase RuvA [Mycoplasma fermentans JER] Length = 195 Score = 90.5 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 81/205 (39%), Gaps = 17/205 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ KG I ++ + V Y + P L +++ L Sbjct: 1 MVLYRKGKIVYKDGKNLIFESDNVGYYVMFPDNKRIKL---NQEIKMYLYEIKNDFTWSL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ FM L ++ G+G RVA VL+ + + I N + IA+I I+ ++ Sbjct: 58 YGFKELEERKLFMDLINLNGIGPRVAFNVLNV-GFDKAINLIRDGNIEEIAKIEYINPRL 116 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A I+ EL+ K +++ ++ + A L LG+ Q +A Sbjct: 117 ARIIVEELQDKWAKITNT---------QDAQKQVKNSNLLSEAKEILKMLGFKAAQIDSA 167 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 + V + D +I A++ + Sbjct: 168 LTKVELNQ----DVESMIEEAIKLM 188 >gi|255027975|ref|ZP_05299961.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes FSL J2-003] Length = 110 Score = 88.2 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 1/110 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M IKG + + +Y++++ + Y I S G +F+ H+R+D I L Sbjct: 1 MYDYIKGTVTTITPEYIVVEAGQIGYQI-ITGNPFSFQRLEGTEAQVFLYQHVREDNISL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVI 110 FGF + +R F L SV G+G + A+ +++ L+ +I ++ + Sbjct: 60 FGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLISAIESEDDVYL 109 >gi|283456064|ref|YP_003360628.1| Holliday junction DNA helicase ruvA [Bifidobacterium dentium Bd1] gi|283102698|gb|ADB09804.1| Holliday junction DNA helicase ruvA [Bifidobacterium dentium Bd1] Length = 168 Score = 88.2 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 44/169 (26%), Positives = 85/169 (50%), Gaps = 13/169 (7%) Query: 42 GDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVES 101 G ++ ++ QD I LFGFL+ ++ F+ LQ V G+G +VA+ +LS + L + Sbjct: 4 GQEVKVYTSLNVSQDAITLFGFLTPASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLAHA 63 Query: 102 IILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAI 161 + ++ +A+ PG+ K A +I+ ELKG S ++ S +++ + + Sbjct: 64 VADGDATALAKAPGLGKKGAQKIILELKGSID--LSQIETAASVISR------PEDTGSE 115 Query: 162 NAISALVNLGYGQDQATTAVVSVLKKEK-----NIADDSQIIRLALRAI 205 + L++LG+ Q A AV V + + D ++++LAL ++ Sbjct: 116 QVVEGLISLGWRQQDALHAVQEVCRSNDIATPLSNEDVPRVLKLALTSL 164 >gi|1361545|pir||F64239 Holliday junction DNA helicase ruvA homolog - Mycoplasma genitalium Length = 260 Score = 87.8 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 35/209 (16%), Positives = 80/209 (38%), Gaps = 18/209 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRT-LSCLGKIGDFCTLFVETHMRQDQ-- 57 MI I G + + + ++++ + Y + + + +Q Sbjct: 56 MITSIFGKVTFVGKRKIIVEHNWISYWFNTKENHKFEKNLEKNKQIFCHIIKKIVANQII 115 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 F F + +++WF L + G+G++ A+ +L+ E+ + I+ N + I G++ Sbjct: 116 EEAFAFNTLEEKEWFCRLIELNGIGSKTALNLLNN-DLEEIKQYILENNYSALCGINGVN 174 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 KIA ++ ++ N + + L +LGY Q + Sbjct: 175 NKIARALL------------SLEIFEKSENNKNIKGVQVADGYDELFETLKSLGYKQQEI 222 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ + + K D SQ++ ++ +S Sbjct: 223 QDALKMI--EVKPDFDISQLVAEVIKLMS 249 >gi|224540664|ref|ZP_03681203.1| hypothetical protein BACCELL_05578 [Bacteroides cellulosilyticus DSM 14838] gi|224517736|gb|EEF86841.1| hypothetical protein BACCELL_05578 [Bacteroides cellulosilyticus DSM 14838] Length = 82 Score = 87.8 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 1/82 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI I+G + L +ID G+ Y + + T + + + C L++ +R+D L Sbjct: 1 MIEYIRGGLAELSPATAVIDCNGLGYAVNISLNTYAAI-QGKKECKLYIYEAIREDAYVL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVG 82 +GF +R+ F+LL SV G+G Sbjct: 60 YGFADKQERELFLLLISVSGIG 81 >gi|153827628|ref|ZP_01980295.1| holliday junction ATP-dependent DNA helicase RuvA [Vibrio cholerae MZO-2] gi|149737900|gb|EDM52805.1| holliday junction ATP-dependent DNA helicase RuvA [Vibrio cholerae MZO-2] Length = 120 Score = 87.5 bits (215), Expect = 9e-16, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 4/122 (3%) Query: 85 VAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLS-SVVQQDM 143 + + +LS +TA + V + ++ + ++PG+ K A R++ E+K + + Sbjct: 1 MGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKTAERLVVEMKDRLKGWGAGDLFTPA 60 Query: 144 SCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 + + + A+SAL+ LGY QA+ AV V K ++IR AL+ Sbjct: 61 TDAAPVDSTPVIAQNAQEEAMSALLALGYKPPQASKAVSQVAKA---GMSSEELIREALK 117 Query: 204 AI 205 ++ Sbjct: 118 SM 119 >gi|167005424|ref|ZP_02271182.1| Holliday junction DNA helicase RuvA [Campylobacter jejuni subsp. jejuni 81-176] Length = 135 Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 2/135 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDV-QGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIR 59 M+ I+G I ++++ G+ Y I+ + + + + + F+ +++D + Sbjct: 1 MVVGIEGIITKKEPTFIIVKCASGLSYGIFISLFCSAKI-QTQEKHEFFITQIIKEDSNK 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GFL +++ F +L V GVGA AM V S + +++ L + V+ ++PGI K Sbjct: 60 FYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDVNSFYKALSLGDESVLKKVPGIGPK 119 Query: 120 IASRIMTELKGKAIS 134 A RI+ EL Sbjct: 120 SAKRIIVELSDTKTK 134 >gi|213029463|ref|ZP_03343910.1| Holliday junction DNA helicase motor protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 96 Score = 85.9 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 48/96 (50%) Query: 25 CYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGAR 84 Y ++ P+ L + G +F +R+D L+GF + +R F L GVG + Sbjct: 1 GYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIKTNGVGPK 60 Query: 85 VAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +A+ +LS ++A + V ++ + + ++PGI K Sbjct: 61 LALAILSGMSAQQFVNAVEREELGALVKLPGIGKKT 96 >gi|297520077|ref|ZP_06938463.1| Holliday junction DNA helicase RuvA [Escherichia coli OP50] Length = 108 Score = 84.8 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 3/109 (2%) Query: 96 TELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICS 155 + V ++ + + ++PGI K A R++ E+K + L + + + + Sbjct: 1 QQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPA 60 Query: 156 MPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204 A++ALV LGY +A+ V + + A +IR ALRA Sbjct: 61 TNDAEQEAVAALVALGYKPQEASRMVSKIAR---PDASSETLIREALRA 106 >gi|205374298|ref|ZP_03227097.1| Holliday junction DNA helicase motor protein [Bacillus coahuilensis m4-4] Length = 148 Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 66/147 (44%), Gaps = 4/147 (2%) Query: 59 RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISM 118 L+GFL+ ++ FM L +V G+G + A+ +L + ++ +I +N + + PG+ Sbjct: 3 SLYGFLTMEEKLLFMKLLNVTGIGPKGALAILGSGDVSGVIHAIEEENEAFLVKFPGVGK 62 Query: 119 KIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQAT 178 K A +++ +LKGK + ++ K S F AI AL LGY + Sbjct: 63 KTARQMILDLKGKLQDVVPDFFPNLFQPEK--EDTLSSDHFLNEAILALKALGYSDRELK 120 Query: 179 TAVVSVLKKEKNIADDSQIIRLALRAI 205 + + + + I+ L+ + Sbjct: 121 KVEPKL--RNEPGKTSDEYIKRGLQLL 145 >gi|269114958|ref|YP_003302721.1| holliday junction DNA helicase ruvA [Mycoplasma hominis] gi|268322583|emb|CAX37318.1| Holliday junction DNA helicase ruvA [Mycoplasma hominis ATCC 23114] Length = 206 Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 36/196 (18%), Positives = 79/196 (40%), Gaps = 7/196 (3%) Query: 4 KIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGF 63 + G I + +Y+++D G +IY D +F+ + + + +GF Sbjct: 4 YLYGKIMHVNTNYLILDHNGEGELIYVAD---IKRFNKDDLRKIFIYDVVNEYKKTTYGF 60 Query: 64 LSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASR 123 + + F L S+QG+G + A+ +L+ L++ I ++ + + +S++IA+ Sbjct: 61 ENFKELIIFEDLISLQGLGPKTAISLLNL-GWENLIQLIANEDKDKLCEASYVSLRIANN 119 Query: 124 IMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVS 183 I+ K K S + + K + S+ + LG+ + Q + A+ Sbjct: 120 IIFAYKQKYAKFLSKLSDEDLLKIKSKNTSDSLREKFEY---TMRMLGFKKQQISYALEK 176 Query: 184 VLKKEKNIADDSQIIR 199 + E I+ Sbjct: 177 MSITENIEESVENAIK 192 >gi|108885107|ref|NP_073029.2| Holliday junction DNA helicase RuvA [Mycoplasma genitalium G37] gi|2498869|sp|Q49424|RUVA_MYCGE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|84626136|gb|AAC71583.2| Holliday junction DNA helicase [Mycoplasma genitalium G37] gi|166078725|gb|ABY79343.1| Holliday junction DNA helicase [synthetic Mycoplasma genitalium JCVI-1.0] Length = 205 Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 35/209 (16%), Positives = 80/209 (38%), Gaps = 18/209 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRT-LSCLGKIGDFCTLFVETHMRQDQ-- 57 MI I G + + + ++++ + Y + + + +Q Sbjct: 1 MITSIFGKVTFVGKRKIIVEHNWISYWFNTKENHKFEKNLEKNKQIFCHIIKKIVANQII 60 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 F F + +++WF L + G+G++ A+ +L+ E+ + I+ N + I G++ Sbjct: 61 EEAFAFNTLEEKEWFCRLIELNGIGSKTALNLLNN-DLEEIKQYILENNYSALCGINGVN 119 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 KIA ++ ++ N + + L +LGY Q + Sbjct: 120 NKIARALL------------SLEIFEKSENNKNIKGVQVADGYDELFETLKSLGYKQQEI 167 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ + + K D SQ++ ++ +S Sbjct: 168 QDALKMI--EVKPDFDISQLVAEVIKLMS 194 >gi|13358012|ref|NP_078286.1| holliday-junction binding protein [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762222|ref|YP_001752534.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171920473|ref|ZP_02690444.2| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|183508627|ref|ZP_02689294.2| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701725|ref|ZP_02971417.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|20455274|sp|Q9PQ41|RUVA_UREPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|189045777|sp|B1AJ90|RUVA_UREP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|11356864|pir||G82889 holliday-junction binding protein UU449 [imported] - Ureaplasma urealyticum gi|6899441|gb|AAF30861.1|AE002141_7 holliday-junction binding protein [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827799|gb|ACA33061.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902931|gb|EDT49220.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182676086|gb|EDT87991.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186700992|gb|EDU19274.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 195 Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 83/205 (40%), Gaps = 27/205 (13%) Query: 8 NIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL------F 61 + + V+ + + Y I P L +I FC L++ ++ + + Sbjct: 7 KVIYANANIVVGEHNFIGYQIRIPKD--YEL-EINKFCKLYLYEYISIMPNKNLIIKDLY 63 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF + +R F+ L S+ +G + A+ +L ++++I +N + I GI+ + A Sbjct: 64 GFRTYNERLLFIDLISINSIGPKTAINILK-YDIDTIIDAIATKNIDYLITIKGINQRNA 122 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 + I +L K I+ + ++A L NLGY + A+ Sbjct: 123 NLICDQLNYKYIN-----------------KVNDKNNWAKELSIGLENLGYTKKDIEYAI 165 Query: 182 VSVLKKEKNIADDSQIIRLALRAIS 206 V + D S+II A++ IS Sbjct: 166 TKVKINSQQDIDISEIISSAIKEIS 190 >gi|144900756|emb|CAM77620.1| Bacterial DNA recombination protein, RuvA [Magnetospirillum gryphiswaldense MSR-1] Length = 75 Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 36/75 (48%), Positives = 51/75 (68%), Gaps = 1/75 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI K+KG I+ L +D+ ++DV GV Y+++C RTL L ++G L VETH+R+D I L Sbjct: 1 MIAKLKGLIDSLGDDFTVVDVGGVGYLVFCSGRTLGRL-QVGIAAALHVETHVREDHIHL 59 Query: 61 FGFLSDLDRQWFMLL 75 +GFL +R WF LL Sbjct: 60 YGFLEPGERDWFNLL 74 >gi|71894187|ref|YP_278295.1| Holliday junction DNA helicase motor protein [Mycoplasma synoviae 53] gi|123747949|sp|Q4A6N7|RUVA_MYCS5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|71850975|gb|AAZ43584.1| holliday junction DNA helicase RuvA [Mycoplasma synoviae 53] Length = 198 Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 34/192 (17%), Positives = 69/192 (35%), Gaps = 14/192 (7%) Query: 7 GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD 66 G I + ++++ +G ++ + G+ L++ + +GF + Sbjct: 7 GEIVYKNNNNIILESKGEGNLVTICDNSRYS---KGEKLKLYLYEVKNDYIQQTYGFKTF 63 Query: 67 LDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 +R F L S+ +G + AM +L + I + K I++I IS K A I Sbjct: 64 KERLLFTDLISIDKIGPKTAMLILD-QNWELVANLIAEGDWKEISKINYISDKSAKLICV 122 Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLK 186 ELK K + + ++ + L LG+ AV ++ Sbjct: 123 ELKDKWAKI----------IQNKEVKKFDDITNIKELKQTLNKLGFKASDIDYAVNNISS 172 Query: 187 KEKNIADDSQII 198 ++ + I Sbjct: 173 TKELDLMVEESI 184 >gi|297183320|gb|ADI19457.1| holliday junction resolvasome, DNA-binding subunit [uncultured bacterium HF0500_16O16] Length = 69 Score = 83.2 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 31/67 (46%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + +IDV GV Y + + T L +G L T++R+D++ L Sbjct: 1 MIDFLRGTLHERTPTRAVIDVGGVGYGVAISLTTYDRLPSVGTEIFLHTYTYVREDRLDL 60 Query: 61 FGFLSDL 67 +G Sbjct: 61 YGIADAE 67 >gi|294155532|ref|YP_003559916.1| Holliday junction DNA helicase RuvA [Mycoplasma crocodyli MP145] gi|291599949|gb|ADE19445.1| Holliday junction DNA helicase RuvA [Mycoplasma crocodyli MP145] Length = 201 Score = 82.8 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 75/194 (38%), Gaps = 11/194 (5%) Query: 7 GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSD 66 G I ++++ G Y+I L L + ++GF Sbjct: 7 GEIVYKKNKNLILESYGTGYMIQVACADRFEL-NTKLKMHLAYIYNEFAKTFSIYGFKDY 65 Query: 67 LDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMT 126 ++R F+ L +V G+GA++AM +L + + + N + ++++ ++ K A I+ Sbjct: 66 MERILFLDLINVNGIGAKIAMNILDN-GWETVADLVASANYETLSKLNFVNEKNARNIIL 124 Query: 127 ELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLK 186 L+ K + +V + + +L LG+ + Q + A+ + Sbjct: 125 SLQDKWKKIRNV---------SNSNETAKNINALSDVSESLKMLGFKEKQISYALSKIKI 175 Query: 187 KEKNIADDSQIIRL 200 E+ Q I+L Sbjct: 176 SEQLEDMVEQSIKL 189 >gi|153827627|ref|ZP_01980294.1| Holliday junction DNA helicase RuvA [Vibrio cholerae MZO-2] gi|149737899|gb|EDM52804.1| Holliday junction DNA helicase RuvA [Vibrio cholerae MZO-2] Length = 66 Score = 82.5 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 33/63 (52%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MIG+++G + +LI++ G+ Y + P+ + L IG+ ++ +R+D L Sbjct: 1 MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLL 60 Query: 61 FGF 63 +G Sbjct: 61 YGL 63 >gi|291084730|ref|ZP_06541669.2| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 102 Score = 82.5 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQI 58 IG+++G I VL++ GV Y ++ P+ L + G +F +R+D Sbjct: 46 IGRLRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQ 102 >gi|257462985|ref|ZP_05627389.1| Holliday junction DNA helicase ruvA [Fusobacterium sp. D12] gi|317060603|ref|ZP_07925088.1| holliday junction DNA helicase ruvA [Fusobacterium sp. D12] gi|313686279|gb|EFS23114.1| holliday junction DNA helicase ruvA [Fusobacterium sp. D12] Length = 101 Score = 82.5 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 32/102 (31%), Positives = 57/102 (55%), Gaps = 1/102 (0%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +KG + +Y +DV GV Y +Y +R + ++G +++ H+R+ + +L Sbjct: 1 MFEYLKGFVSYKKPEYFALDVHGVAYRVYISLRMYEKI-ELGQEYQIYIYNHIREGEYKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESI 102 GFL + +R+ F LL SV+G+G +A+ LS + +LV I Sbjct: 60 IGFLEEKERKLFELLLSVKGIGISLALAALSTYSVEQLVAYI 101 >gi|203283953|ref|YP_002221693.1| Holliday junction DNA helicase [Borrelia duttonii Ly] gi|226698725|sp|B5RLN1|RUVA_BORDL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|201083396|gb|ACH92987.1| Holliday junction DNA helicase [Borrelia duttonii Ly] Length = 196 Score = 82.1 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 48/211 (22%), Positives = 88/211 (41%), Gaps = 21/211 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI KI G I E ++I + I L ++ + + H R D ++L Sbjct: 1 MINKIYGKIVDKKESSIIILAFPFEFEILVSSFCKMEL-RLLEDVEILTYFHFRDDDVKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ +R+ F L V G+G + A+ +LS I +I ++ +I+++ GI KI Sbjct: 60 FGFLNISEREVFEDLIGVDGIGPKAALKILSGIKYDAFRLAIAKEDINLISKVKGIGNKI 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I +L+GK + + ++VN+G+ + A Sbjct: 120 AGKIFLKLRGKLVKGDESSSYMLK---------------FKELEQSIVNMGFDRKLVVVA 164 Query: 181 VVSVLKKEK----NIADDSQ-IIRLALRAIS 206 ++ +K A+ Q + L+ +S Sbjct: 165 FREIMLSDKFLILKEAEQEQFLFTETLKRLS 195 >gi|161621805|ref|YP_015967.2| Holliday junction DNA helicase motor protein [Mycoplasma mobile 163K] Length = 201 Score = 81.7 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 43/207 (20%), Positives = 87/207 (42%), Gaps = 20/207 (9%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFC--TLFVETHMRQDQIR 59 I KI G I ++Y L++ ++IY + L K +F+ H Sbjct: 3 IYKI-GKIVSFGKNYFLLESNYEGFLIYA-----AELEKFEKDVVTKVFIYKHENAYSKT 56 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + +R F+ L S+ G+G + A+ L E++ I + + ++++P + +K Sbjct: 57 LYGFKTFKERLLFIDLLSINGIGPKTALMALES-GYLEIMNLISNNDFETLSKLPFLGLK 115 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I E + K +L + N S + L LG+ +Q Sbjct: 116 SAKQICFEFQSKYANL-------LEKENSGNLKFESKTKKITELSNTLKTLGFKTNQINY 168 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ ++ K D +++ +++ I+ Sbjct: 169 AISNINDKN----DIEEMLEESIQLIA 191 >gi|203287496|ref|YP_002222511.1| Holliday junction DNA helicase [Borrelia recurrentis A1] gi|226698726|sp|B5RQK6|RUVA_BORRA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|201084716|gb|ACH94290.1| Holliday junction DNA helicase [Borrelia recurrentis A1] Length = 196 Score = 81.7 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 48/211 (22%), Positives = 88/211 (41%), Gaps = 21/211 (9%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI KI G I E ++I + I L ++ + + H R D ++L Sbjct: 1 MINKIYGKIVDKKESSIIILAFPFEFEILVSSFCKMEL-RLLEDVEILTYFHFRDDDVKL 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 FGFL+ +R+ F L V G+G + A+ +LS I +I ++ +I+++ GI KI Sbjct: 60 FGFLNISEREVFENLIGVDGIGPKAALKILSGIKYDAFRLAIAKEDINLISKVKGIGNKI 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A +I +L+GK + + ++VN+G+ + A Sbjct: 120 AGKIFLKLRGKLVKGDESSSYMLK---------------FKELEQSIVNMGFDRKLVVVA 164 Query: 181 VVSVLKKEK----NIADDSQ-IIRLALRAIS 206 ++ +K A+ Q + L+ +S Sbjct: 165 FREIMLSDKFLILKEAEQEQFLFTETLKRLS 195 >gi|47458434|gb|AAT27756.1| holliday junction DNA helicase RuvA [Mycoplasma mobile 163K] Length = 204 Score = 81.7 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 43/207 (20%), Positives = 87/207 (42%), Gaps = 20/207 (9%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFC--TLFVETHMRQDQIR 59 I KI G I ++Y L++ ++IY + L K +F+ H Sbjct: 6 IYKI-GKIVSFGKNYFLLESNYEGFLIYA-----AELEKFEKDVVTKVFIYKHENAYSKT 59 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 L+GF + +R F+ L S+ G+G + A+ L E++ I + + ++++P + +K Sbjct: 60 LYGFKTFKERLLFIDLLSINGIGPKTALMALES-GYLEIMNLISNNDFETLSKLPFLGLK 118 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 A +I E + K +L + N S + L LG+ +Q Sbjct: 119 SAKQICFEFQSKYANL-------LEKENSGNLKFESKTKKITELSNTLKTLGFKTNQINY 171 Query: 180 AVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ ++ K D +++ +++ I+ Sbjct: 172 AISNINDKN----DIEEMLEESIQLIA 194 >gi|256384343|gb|ACU78913.1| holliday junction DNA helicase RuvA [Mycoplasma mycoides subsp. capri str. GM12] gi|256385175|gb|ACU79744.1| holliday junction DNA helicase RuvA [Mycoplasma mycoides subsp. capri str. GM12] gi|296455994|gb|ADH22229.1| holliday junction DNA helicase RuvA [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 186 Score = 81.7 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 73/206 (35%), Gaps = 24/206 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + + Y+ I+ Y L L K+ +++ ++ + + Sbjct: 1 MNDYINGLLHKIDDKYLYIESNNSGYRFLYLKSDLKDL-KLNQNNQVYIAINVIDNVFKY 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + L R F LL ++ +G + A +L EL++ + I Q+ GI Sbjct: 60 YGFKNQLIRDLFELLININTIGEKTAFLILENYNYNELIDIFKNGRTDKILQLKGIGSYT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A I+ ++ + + + I++L LGY Sbjct: 120 ARLIINSVQKELFN-------------------NKISDKKNKVITSLEKLGYKTKDIYKI 160 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 ++++ + + L +S Sbjct: 161 IINI----DENMSIEDLTKYVLEQLS 182 >gi|13508274|ref|NP_110224.1| Holliday junction DNA helicase motor protein [Mycoplasma pneumoniae M129] gi|2498870|sp|P75243|RUVA_MYCPN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|1673979|gb|AAB95955.1| Holliday junction DNA helicase RuvA [Mycoplasma pneumoniae M129] gi|301633407|gb|ADK86961.1| Holliday junction DNA helicase RuvA [Mycoplasma pneumoniae FH] Length = 206 Score = 81.3 bits (199), Expect = 7e-14, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 75/209 (35%), Gaps = 17/209 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSC--LGKIGD-FCTLFVETHMRQDQ 57 MI I G I + + ++++ + Y L K FC + Q Sbjct: 1 MIASIFGKITFVGKRKIIVEANCISYWFNVKENHSFEKNLEKPRQVFCQIIKRMVTNQIL 60 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 F F + +++WF + G+G++ A+ + E+ + I N + ++ G + Sbjct: 61 EEGFAFNTLEEKEWFSKFIELNGIGSKTALNL-LNNNLEEMRDYIKNSNYHALTKLTGSN 119 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 K+A ++ D K +M + L +LGY Sbjct: 120 SKVARALLALELY-----------DRDDGGKRIKPNTAMANDYDEMFDTLKSLGYKPQDI 168 Query: 178 TTAVVSVLKKEKNIADDSQIIRLALRAIS 206 A+ + + K D S++I ++ +S Sbjct: 169 QNALSKI--EIKPNFDVSEVIAEVIKLMS 195 >gi|331703541|ref|YP_004400228.1| Holliday junction DNA helicase RuvA [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328802096|emb|CBW54250.1| Holliday junction DNA helicase RuvA [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 186 Score = 81.3 bits (199), Expect = 7e-14, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 73/206 (35%), Gaps = 24/206 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + + Y+ I+ Y L L K+ ++V ++ + + Sbjct: 1 MNDYINGLLHKIDDKYLYIESNNSGYRFLYLKSDLKDL-KLDQNNQVYVAINVIDNVFKY 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF L R F LL ++ +G + A +L EL++ + I Q+ GI Sbjct: 60 YGFKDQLIRDLFELLININTIGEKTAFLILENYNYNELIDIFKNGRTDKILQLKGIGSYT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A I+ ++ + + + I++L LGY Sbjct: 120 ARLIINSVQKELFN-------------------NKISDKKNKVITSLEKLGYKTKDIYKI 160 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 ++++ + + + L +S Sbjct: 161 IINI----DEDMNIEDLTKYVLEQLS 182 >gi|42561075|ref|NP_975526.1| holliday junction DNA helicase RuvA [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|81400587|sp|Q6MT68|RUVA_MYCMS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|42492572|emb|CAE77168.1| holliday junction DNA helicase RuvA [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301320398|gb|ADK69041.1| putative Holliday junction DNA helicase RuvA [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 186 Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 75/206 (36%), Gaps = 24/206 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + + Y+ I++ Y L L K+ ++V ++ + + Sbjct: 1 MNDYINGLLHKIDDKYLYIELNNSGYRFLYLKTDLKDL-KLNQNNQVYVAINVIDNVFKY 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + L R F LL ++ +G + A +L EL++ + I Q+ GI Sbjct: 60 YGFKNQLIRDLFELLININTIGEKTAFLILENYNYNELIDIFKNGRTDKILQLKGIGNYT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A I+ ++ + + + I++L LGY Sbjct: 120 ARLIINSVQKELFN-------------------NKISDKKNKVITSLEKLGYKTKDIYKI 160 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 ++++ + + + L +S Sbjct: 161 IINI----DEDMNIEDLTKYVLEQLS 182 >gi|1620916|emb|CAA70096.1| specificity factor of RuvAB helicase [Borrelia burgdorferi] Length = 178 Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 86/186 (46%), Gaps = 20/186 (10%) Query: 26 YIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARV 85 + + L+ + D LF + R+++++LFGFL+ +R+ F L V GVG R Sbjct: 7 FELLVSAFCLANF-NLSDKVELFTYLYTRENELKLFGFLNSDEREIFKELIGVSGVGPRA 65 Query: 86 AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSC 145 A+ VLS I E E+I ++ +++++I GI K+A ++ L+GK + S + + Sbjct: 66 ALRVLSNIRYNEFKEAIDREDIELVSKIKGIGKKMAGKMFLHLQGKLLINSELESTGLF- 124 Query: 146 VNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSV--LKKEKNIADDSQ---IIRL 200 ++V++G+ + + + L + N+ D + + + Sbjct: 125 -------------RFKELEESIVSMGFDRKIVNSKIREAFNLAEFANLKDSEKEQFLFKE 171 Query: 201 ALRAIS 206 L+ IS Sbjct: 172 VLKRIS 177 >gi|284931638|gb|ADC31576.1| Holliday junction ATP-dependent DNA helicase ruvA [Mycoplasma gallisepticum str. F] Length = 226 Score = 79.8 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 88/221 (39%), Gaps = 19/221 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ--- 57 MI + IE + +L Y + + L T + Q+ Sbjct: 1 MITSVYAKIEYVTNTKMLFVANNWGYWVNVKPNSGFSRTDNNVLVFLHELTFLAQNNAIN 60 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 L+ F S +++WF L ++ G+G + AM V+ E++ I + + ++ I+ Sbjct: 61 KELYAFKSLKEKEWFKTLLTINGIGPKTAMNVMVNK-QEEVLTLIKNNDLNGLLRLENIN 119 Query: 118 MKIASRIMTE-------------LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI 164 K+A+ ++ + K + + +K+ + I AI Sbjct: 120 KKVATMLLASDIASKHYLKNQIVVSDKVE--PQIDDDEKIDDSKDLNDDELLSEIVIEAI 177 Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 L++LGY Q+Q TA+ + K ++I D + ++ + ++ I Sbjct: 178 DCLISLGYKQEQIKTALAEIDLKNESINDSADLVAVIIKQI 218 >gi|171920937|ref|ZP_02696104.2| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|185178954|ref|ZP_02555140.2| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024044|ref|ZP_02569578.2| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518273|ref|ZP_02555997.2| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524367|ref|ZP_02558092.2| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867795|ref|ZP_03079795.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273854|ref|ZP_03206388.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554366|ref|YP_002284876.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550585|ref|ZP_03771534.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551217|ref|ZP_03772163.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|254767398|sp|B5ZBT6|RUVA_UREU1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|171903169|gb|EDT49458.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184209229|gb|EDU06272.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188019075|gb|EDU57115.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188998198|gb|EDU67295.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195660085|gb|EDX53465.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660492|gb|EDX53749.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249609|gb|EDY74391.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209541867|gb|ACI60096.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225379032|gb|EEH01397.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225379739|gb|EEH02101.1| holliday junction ATP-dependent DNA helicase RuvA [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 195 Score = 79.4 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 41/205 (20%), Positives = 85/205 (41%), Gaps = 27/205 (13%) Query: 8 NIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETH--MRQDQIRL----F 61 + + V+ + + Y I P L ++ FC L++ + + ++ + + Sbjct: 7 KVIYANANVVIGEHNFIGYQIRVPKD--YEL-EVNKFCKLYLYEYASIMPNKNLIIKDLY 63 Query: 62 GFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIA 121 GF + +R F+ L S+ +G + A+ +L ++++I ++ +A I G++ + A Sbjct: 64 GFRTYNERLLFIDLISINSIGPKTAINILK-YDINLIIDAIATKDVDFLATIKGVNQRSA 122 Query: 122 SRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAV 181 + I +L K I+ + +A L NLGY + A+ Sbjct: 123 NLICDQLNYKYIN-----------------KVSEKNPWAKELSIGLENLGYDKKDIEYAI 165 Query: 182 VSVLKKEKNIADDSQIIRLALRAIS 206 V + D S+II A++ IS Sbjct: 166 TKVKVDTQQNIDISEIIGCAIKEIS 190 >gi|31544808|ref|NP_853386.1| Holliday junction ATP-dependent DNA helicase RuvA [Mycoplasma gallisepticum str. R(low)] gi|81572800|sp|Q7NAN2|RUVA_MYCGA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|31541654|gb|AAP56954.1| Holliday junction ATP-dependent DNA helicase ruvA [Mycoplasma gallisepticum str. R(low)] gi|284930882|gb|ADC30821.1| Holliday junction ATP-dependent DNA helicase ruvA [Mycoplasma gallisepticum str. R(high)] Length = 226 Score = 79.4 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 88/221 (39%), Gaps = 19/221 (8%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQ--- 57 MI + IE + +L Y + + L T + Q+ Sbjct: 1 MITSVYAKIEYVTNTKMLFVANNWGYWVNVKPNSGFSRTDNNVLVFLHELTFLAQNNAIN 60 Query: 58 IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 L+ F S +++WF L ++ G+G + AM V+ E++ I + + ++ I+ Sbjct: 61 KELYAFKSLKEKEWFKALLTINGIGPKTAMNVMVNK-QEEVLTLIKNNDLNGLLRLENIN 119 Query: 118 MKIASRIMTE-------------LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAI 164 K+A+ ++ + K + + +K+ + I AI Sbjct: 120 KKVATMLLASDIASKHYLKNQIVVSDKVE--PQIDDDEKIDDSKDLNDDELLSEIVIEAI 177 Query: 165 SALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 L++LGY Q+Q TA+ + K ++I D + ++ + ++ I Sbjct: 178 DCLISLGYKQEQIKTALAEIDLKNESINDSADLVAVIIKQI 218 >gi|72382108|ref|YP_291463.1| Holliday junction DNA helicase RuvA [Prochlorococcus marinus str. NATL2A] gi|90135557|sp|Q46L68|RUVA_PROMT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|72001958|gb|AAZ57760.1| Holliday junction DNA helicase subunit RuvA [Prochlorococcus marinus str. NATL2A] Length = 224 Score = 78.6 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 70/167 (41%), Gaps = 3/167 (1%) Query: 26 YIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARV 85 Y I + + ++ + L++ R+D L+GF+ R F + SV G+G ++ Sbjct: 30 YEIQLLPKQIDK-AEVLNEFELWIHQIDREDGTSLYGFIEVNQRDLFREIISVNGIGPQI 88 Query: 86 AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSC 145 M +L +LV +I + S ++ + GI +IA R++ EL+ K + Sbjct: 89 GMAMLEEFEVPQLVNAIENKESNLLTKTQGIGKRIAERLIVELRNKLQRFTDN--DKTIH 146 Query: 146 VNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIA 192 NK + L +LGY ++ ++ + EK + Sbjct: 147 ENKNDIEANQFSKYIDEIYLILNSLGYVDNEIKESIKIITINEKENS 193 >gi|168700081|ref|ZP_02732358.1| probable holliday junction DNA helicase ruvA [Gemmata obscuriglobus UQM 2246] Length = 247 Score = 78.6 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 41/240 (17%), Positives = 85/240 (35%), Gaps = 43/240 (17%) Query: 1 MIGKIKGNIEGL--YEDYVLIDVQGVCYIIYCPIRTLSCLG-KIGDFCTLFVETHMRQDQ 57 MI K+ G + ED V + + Y I P + + G T + ++ + Sbjct: 1 MITKMTGVLTRCRHDEDDVRLQIGPFEYQIMVPEAVRRQIQMRTGHELTFHITEYLEGNS 60 Query: 58 ------IRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIA 111 R GFL + + ++F L +V+ +G + A+ ++ + + ++I Q++K ++ Sbjct: 61 SGNRFVPRRVGFLHEHELEFFELFCTVEKIGVKKALKAMA-FSVKTIADAISRQDAKWLS 119 Query: 112 QIPGISMKIASRIMTELKGKAISL---------------------------------SSV 138 +PGI A +I+T LK K + Sbjct: 120 ALPGIGPTTAEQIVTTLKRKVTKFTVLNTPAPVAAPGAEPAPDAVVEEKPSGKKAKSAKK 179 Query: 139 VQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQII 198 + + E + + AL+ LG +A + ++L + + I Sbjct: 180 TAAEEPALATEPLVTAADGQLIEDVYQALMGLGLNPLEARAKLDALLTCGQPFRSLQEAI 239 >gi|124025644|ref|YP_001014760.1| putative holliday junction DNA helicase RuvA [Prochlorococcus marinus str. NATL1A] gi|166230583|sp|A2C1Y5|RUVA_PROM1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|123960712|gb|ABM75495.1| putative holliday junction DNA helicase RuvA [Prochlorococcus marinus str. NATL1A] Length = 224 Score = 77.8 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 71/167 (42%), Gaps = 3/167 (1%) Query: 26 YIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARV 85 Y I + + ++ + L++ R+D L+GF+ R F + SV G+G ++ Sbjct: 30 YEIQLLPKQIDK-AEVLNEFELWIHQIDREDGTSLYGFIEVNQRDLFREIISVNGIGPQI 88 Query: 86 AMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSC 145 M +L +LV +I + S ++ + GI +IA R++ EL+ K + Sbjct: 89 GMAMLEEFEVPQLVNAIENKESNLLTKTQGIGKRIAERLIVELRNKLQRFTDN--DKTIH 146 Query: 146 VNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIA 192 NK+ + L +LGY ++ ++ + EK + Sbjct: 147 ENKKGIEANQFSKYIDEIYLILNSLGYVDNEIKESIKIITINEKENS 193 >gi|213421561|ref|ZP_03354627.1| Holliday junction DNA helicase motor protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 105 Score = 77.8 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 3/106 (2%) Query: 99 VESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPS 158 + ++ + + ++PGI K A R++ E+K + L + + + Sbjct: 1 MNAVEREELGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTPAVDLVLTSPASPTSED 60 Query: 159 FAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRA 204 A++ALV LGY +A+ V + + A +IR ALRA Sbjct: 61 AEQEAVAALVALGYKPQEASRMVSKIAR---PDASSETLIRDALRA 103 >gi|323465932|gb|ADX69619.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus helveticus H10] Length = 140 Score = 77.8 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 69/134 (51%), Gaps = 7/134 (5%) Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 ++GF S+ D+ F+ L SV G+G + A+ +++ A L E+I K + + PG+ K Sbjct: 1 MYGFQSEDDKGLFLKLLSVSGIGPKSALAIMAAEDANSLAEAIEQGEVKYLTRFPGVGKK 60 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 AS+I+ +LKGK ++ ++++ ++P +A+ AL+ LGY Q + Sbjct: 61 TASQIVLDLKGKLRDY-------VARLDRQDEEQGNIPPALNDALLALIALGYTQKEVDR 113 Query: 180 AVVSVLKKEKNIAD 193 + + + AD Sbjct: 114 ITPKLEEVNADTAD 127 >gi|260222298|emb|CBA31722.1| Holliday junction ATP-dependent DNA helicase ruvA [Curvibacter putative symbiont of Hydra magnipapillata] Length = 139 Score = 77.1 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 17/154 (11%) Query: 53 MRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQ 112 +R+D L+GF + +R+ F L + GVG R A+ VLS + +L +++ LQ + + + Sbjct: 2 VREDAQILYGFATSTEREAFRELIKISGVGPRTALSVLSGMDVGDLAQAVTLQEAGRLIK 61 Query: 113 IPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGY 172 +PGI K A R +++ A + ++ + + AL+ LGY Sbjct: 62 VPGIGKKTAER-------------LLLELKGKLGADLGAPLGAVGDAQSDILQALLALGY 108 Query: 173 GQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 + LK S I+LAL++++ Sbjct: 109 S----EKEAAAALKALPKDVGVSDGIKLALKSLA 138 >gi|33322999|gb|AAQ07236.1|AF496544_1 holliday junction DNA helicase [Lactobacillus delbrueckii subsp. lactis] Length = 83 Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 3/86 (3%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M +G I + YV+I+V G+ Y I P K GD ++VE +R++++ L Sbjct: 1 MYEYFEGTITVVNPAYVVIEVAGIGYRILTPTPYAY---KNGDKARIYVEQVVRENRMTL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVA 86 +GF S D+ F L V G+G + A Sbjct: 58 YGFKSQQDKVLFNKLNEVSGIGPKSA 83 >gi|113474071|ref|YP_720132.1| DNA recombination protein RuvA [Trichodesmium erythraeum IMS101] gi|110165119|gb|ABG49659.1| DNA recombination protein, RuvA [Trichodesmium erythraeum IMS101] Length = 109 Score = 75.5 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 6/96 (6%) Query: 1 MIGKIKGNIEGLYEDY-----VLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55 MI +KG + +Y+ V+++V V Y + R L + G +F MR+ Sbjct: 1 MINYLKGKVANVYKGSGFRMTVILEVNQVGYELQVLPRLTQSLQE-GKQVQVFTHQQMRE 59 Query: 56 DQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLS 91 DQ+ L+GF + +R F L SV G+GA++A+ +L Sbjct: 60 DQMVLYGFGTSAERDLFRQLVSVSGIGAQLAIALLD 95 >gi|293363750|ref|ZP_06610492.1| putative Holliday junction DNA helicase RuvA [Mycoplasma alligatoris A21JP2] gi|292552671|gb|EFF41439.1| putative Holliday junction DNA helicase RuvA [Mycoplasma alligatoris A21JP2] Length = 201 Score = 75.1 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 76/200 (38%), Gaps = 16/200 (8%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ--DQIR 59 I KI G I ++++ G + I + ++ L++ Sbjct: 3 IYKI-GEIVYKKNKNIILESYGSGFWIQVANQERF---EVNSKVKLYLADIFSDFTKSFS 58 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMK 119 +GF ++R F L +V G+GA++AM +L + + I+ + + + ++ ++ K Sbjct: 59 TYGFKDYMERVLFFDLINVNGIGAKIAMNILEN-GWQTVADLIVEGSVETLTKLNAVNEK 117 Query: 120 IASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT 179 IA ++ + K + + + N ++L LG+ + Q + Sbjct: 118 IAKNLILTYQDKWLKIRGAANSKETSKNTIN---------LNELGNSLKVLGFKEKQISY 168 Query: 180 AVVSVLKKEKNIADDSQIIR 199 A+ + + Q I+ Sbjct: 169 ALSKIKVTDHLEDMVEQSIK 188 >gi|69250107|ref|ZP_00605099.1| RuvA, C-terminal [Enterococcus faecium DO] gi|68194009|gb|EAN08566.1| RuvA, C-terminal [Enterococcus faecium DO] Length = 125 Score = 74.4 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 7/122 (5%) Query: 84 RVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDM 143 +V + +++ + L++++ + + + PG+ K A +++ +LKGK LS + Sbjct: 8 KVPLAIMASEDHSGLIQAVESSDVTYLTKFPGVGKKTAQQMILDLKGKFGELSIDTPFSL 67 Query: 144 SCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALR 203 + A+ AL LGY + + KE + + +R AL+ Sbjct: 68 FDEAN-----TKDATALSEAMEALSALGYSDREIKRVEKQL--KEVDNQTTDEYLRQALK 120 Query: 204 AI 205 + Sbjct: 121 LM 122 >gi|83319351|ref|YP_424403.1| Holliday junction DNA helicase ruvA, putative [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|123767572|sp|Q2SS60|RUVA_MYCCT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gi|83283237|gb|ABC01169.1| Holliday junction DNA helicase ruvA, putative [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 186 Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 31/206 (15%), Positives = 77/206 (37%), Gaps = 24/206 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I G + + + ++ +++ + Y L K+ + +++ ++ + + Sbjct: 1 MNDYINGFLYKIDDKFLYLELNYLGYRYLYLKSDLKNF-KLNENNKVYIAINVIDNHFKY 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + L R F +L ++ +G + A +L + EL++ + I Q+ GI Sbjct: 60 YGFFNQLVRDLFEILININTIGEKTAFLILENYSYQELIDIFKNGKTDKILQLKGIGNYT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A I+ ++ + + + I++L LGY Sbjct: 120 ARLIINSVQKELFN-------------------NKISEKKNKVITSLEKLGYKTKDIYKI 160 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 +++V ++ + L +S Sbjct: 161 IINV----DEDLTIDELTKYVLEKLS 182 >gi|218508888|ref|ZP_03506766.1| Holliday junction DNA helicase RuvA [Rhizobium etli Brasil 5] Length = 55 Score = 72.8 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 43/55 (78%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQ 55 MIGK+KG I+ + EDYVL+DV GVCY+ +C RTLS LG G+ C LF+ET++R+ Sbjct: 1 MIGKLKGTIDEIGEDYVLVDVHGVCYVAHCSARTLSKLGSAGEACVLFIETYVRE 55 >gi|313665319|ref|YP_004047190.1| Holliday junction DNA helicase RuvA [Mycoplasma leachii PG50] gi|312949212|gb|ADR23808.1| putative Holliday junction DNA helicase RuvA [Mycoplasma leachii PG50] Length = 186 Score = 72.4 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 31/206 (15%), Positives = 78/206 (37%), Gaps = 24/206 (11%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M I + + + ++ +++ + Y R L K+ + +++ T++ + + Sbjct: 1 MNDYINAFLHKIDDKFLYLELNNLGYRYLYLKRDLKNF-KLSENNKIYIATNVIDNLFKC 59 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF + L R F +L ++ +G + A +L + EL++ + I Q+ GI Sbjct: 60 YGFYNQLVRDLFEILININTIGEKTAFLILENYSYEELIDIFKNAKTDKILQLKGIGSYT 119 Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A I+ ++ + + + I++L LGY Sbjct: 120 ARLIINSVQKELFN-------------------NKISEKKNKVITSLEKLGYKTKDIYKI 160 Query: 181 VVSVLKKEKNIADDSQIIRLALRAIS 206 ++++ ++ + L +S Sbjct: 161 IINI----DEDLTIDELTKYVLEKLS 182 >gi|224540665|ref|ZP_03681204.1| hypothetical protein BACCELL_05579 [Bacteroides cellulosilyticus DSM 14838] gi|224517737|gb|EEF86842.1| hypothetical protein BACCELL_05579 [Bacteroides cellulosilyticus DSM 14838] Length = 115 Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 63/118 (53%), Gaps = 3/118 (2%) Query: 88 GVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVN 147 +LS ++ ELV I +N+ ++ + GI +K A R++ +LK K + ++ + + Sbjct: 1 MILSALSPAELVNVISTENANLLKTVKGIGLKTAQRVIVDLKDKIKTGAASAGSTIGSLG 60 Query: 148 KEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + + AI+AL LG+ Q + V+++LK+E + A Q+I+LAL+ + Sbjct: 61 GMLS--AANAQVQEEAIAALTMLGFAQAPSQKVVLAILKEEPD-APVEQVIKLALKRL 115 >gi|206895983|ref|YP_002247234.1| holliday junction ATP-dependent DNA helicase RuvA, putative [Coprothermobacter proteolyticus DSM 5265] gi|206738600|gb|ACI17678.1| holliday junction ATP-dependent DNA helicase RuvA, putative [Coprothermobacter proteolyticus DSM 5265] Length = 182 Score = 69.4 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 64/161 (39%), Gaps = 23/161 (14%) Query: 48 FVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNS 107 ++ + IR+F F + + F +L++V+GVG A +LS +L+ I + Sbjct: 40 YLFFVSFDNDIRVFVFSNKEEFGLFQVLKNVKGVGNIKASRILSLYDVQQLLNMIKAGDE 99 Query: 108 KVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISAL 167 +A +PGI + A RI+ EL G+ D + ++A Sbjct: 100 HELALLPGIGERTAKRIVAELSGRLTHTRHDFDND-----------------FMEVVNAA 142 Query: 168 VNLGYGQDQATTAVVSVLKKEKN--IADDSQIIRLALRAIS 206 +LGY ++ V +L +R +R ++ Sbjct: 143 CDLGYERN----VVTELLNGSSEWRDKTLEDALRWVIRELN 179 >gi|254775923|ref|ZP_05217439.1| Holliday junction DNA helicase RuvA [Mycobacterium avium subsp. avium ATCC 25291] Length = 68 Score = 69.0 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI ++G + + D+ +I+ GV Y + TLS L + G L +R+D + L Sbjct: 1 MIASVRGEVLEVALDHAVIEAAGVGYRVNATPSTLSTL-RTGTQARLITAMIVREDSMTL 59 Query: 61 FGFLSDL 67 +GF Sbjct: 60 YGFTDAE 66 >gi|254994714|ref|ZP_05276904.1| Holliday junction DNA helicase (ruvA) [Anaplasma marginale str. Mississippi] Length = 138 Score = 69.0 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 64/153 (41%), Gaps = 18/153 (11%) Query: 54 RQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQI 113 R +L+GF + ++ +L V GV + AM +L +T ++ +I+ ++ + Sbjct: 3 RDGVSQLYGFANREEQNCMRMLIKVSGVNYKTAMAILDVLTPEQVFSAIVSEDRAALKVG 62 Query: 114 PGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYG 173 G+ K+ SRI++EL + + + A++AL++LGY Sbjct: 63 -GVGEKLISRIISELTPQVQKFELNRFAATTRTDS-------------EAVAALLSLGYE 108 Query: 174 QDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 + A A+ V +R AL +S Sbjct: 109 RTAALGALQKV----GVCDSTEDAVRRALLELS 137 >gi|213022656|ref|ZP_03337103.1| Holliday junction DNA helicase motor protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 87 Score = 68.6 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 3/88 (3%) Query: 117 SMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQ 176 K A R++ E+K + + + + A++ALV LGY + Sbjct: 1 GKKTAERLIVEMKDRFKGPHGDLFTPAVDLVLTSPASPTSEDAEQEAVAALVALGYKPQE 60 Query: 177 ATTAVVSVLKKEKNIADDSQIIRLALRA 204 A+ V + + A +IR ALRA Sbjct: 61 ASRMVSKIAR---PDASSETLIRDALRA 85 >gi|308189841|ref|YP_003922772.1| hypothetical protein MFE_02810 [Mycoplasma fermentans JER] gi|307624583|gb|ADN68888.1| hypothetical protein MFE_02810 [Mycoplasma fermentans JER] Length = 145 Score = 67.4 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 4/134 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ KG I ++ + V Y + P L +++ L Sbjct: 1 MVLYRKGKIVYKDGKNLIFESNNVGYYVMFPDNKRIKL---NQELKMYLYEIKNDFTWSL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L ++ G+G RVA VL+ + + I N + IA+I I+ ++ Sbjct: 58 YGFKELEERKLFADLVNLNGIGPRVAFNVLNV-GFDKAINLIRDGNIEEIAKIEYINPRL 116 Query: 121 ASRIMTELKGKAIS 134 A I+ ELK K S Sbjct: 117 ARIIVEELKEKLSS 130 >gi|325973630|ref|YP_004250694.1| holliday junction ATP-dependent DNA helicase, RuvA [Mycoplasma suis str. Illinois] gi|325990082|ref|YP_004249781.1| Holliday junction ATP-dependent DNA helicase RuvA [Mycoplasma suis KI3806] gi|323575167|emb|CBZ40829.1| Holliday junction ATP-dependent DNA helicase RuvA [Mycoplasma suis] gi|323652232|gb|ADX98314.1| holliday junction ATP-dependent DNA helicase, RuvA [Mycoplasma suis str. Illinois] Length = 206 Score = 66.3 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 42/210 (20%), Positives = 91/210 (43%), Gaps = 13/210 (6%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQI-- 58 M +K I ++++Y++ + G Y I T S + +F E + Sbjct: 1 MY-YLKCQIISVHKNYLIAESNGKGYKINF-ADTYSIKEQEEHLIYVFREFKLDTKNQIT 58 Query: 59 -RLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGIS 117 +LFGFLS+ + + F L +++G+G + A +L+ + + +A++ G + Sbjct: 59 SQLFGFLSEKEFELFNSLLAIKGIGCKTAQAILTN-DWNMMYFLAEREERLKLAELRGFN 117 Query: 118 MKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQA 177 +KIA+ + +K + ++ + ++ S IS+L+ +GY D Sbjct: 118 LKIANLFIYSIK------NMKSLKNSFNKHSSSSYSDSKECKEKEVISSLIKIGYKFDDI 171 Query: 178 TTAVVSVLKKEKNIA-DDSQIIRLALRAIS 206 A+ + + + + D + +I L+ IS Sbjct: 172 KRALDIIRESDTELKNDFNSLINECLKTIS 201 >gi|331668555|ref|ZP_08369403.1| holliday junction ATP-dependent DNA helicase RuvA [Escherichia coli TA271] gi|331063749|gb|EGI35660.1| holliday junction ATP-dependent DNA helicase RuvA [Escherichia coli TA271] Length = 80 Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 3/81 (3%) Query: 124 IMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVS 183 ++ E+K + L + + + + A++ALV LGY +A+ V Sbjct: 1 MIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRMVSK 60 Query: 184 VLKKEKNIADDSQIIRLALRA 204 + + A +IR ALRA Sbjct: 61 IAR---PDASSETLIREALRA 78 >gi|330936718|gb|EGH40905.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. pisi str. 1704B] Length = 83 Score = 65.1 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 4/85 (4%) Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180 A R++ ELK + + S + + V+ + S +A+SAL++LGY +A+ A Sbjct: 2 AERLLVELKDRFKAWES-LPGTFTLVSNGPNQAEPVASAESDAVSALISLGYKPQEASKA 60 Query: 181 VVSVLKKEKNIADDSQIIRLALRAI 205 V ++ +K+ + AD +IR AL+ + Sbjct: 61 VSAIKEKDLSSAD---LIRRALKGM 82 >gi|113474072|ref|YP_720133.1| Holliday junction DNA helicase RuvA [Trichodesmium erythraeum IMS101] gi|110165120|gb|ABG49660.1| Holliday junction DNA helicase RuvA [Trichodesmium erythraeum IMS101] Length = 119 Score = 63.6 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 8/120 (6%) Query: 89 VLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNK 148 +LS +LV++I+ N++V+A+ PG+ K A RI ELK K S Sbjct: 1 MLSLTELPDLVQAIVGGNTRVLAKTPGVGAKTAERITLELKNKLAEWRQDAGLTTS---- 56 Query: 149 EQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADD--SQIIRLALRAIS 206 + MP+ L+ LGY + ++ +V K + IR A+ +S Sbjct: 57 --VPVGVMPAIQEEVEMTLLALGYTGQEVIQSLQAVSKDANMSKNTNAEDWIREAISWLS 114 >gi|319776838|ref|YP_004136489.1| holliday junction ATP-dependent DNA helicase ruva [Mycoplasma fermentans M64] gi|318037913|gb|ADV34112.1| Holliday junction ATP-dependent DNA helicase RuvA [Mycoplasma fermentans M64] Length = 145 Score = 63.6 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 4/134 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ KG I ++ + V Y + P L + + L Sbjct: 1 MVLYRKGKIVYKDGKNLIFESDNVGYYVTFPDNKRIKL---NQELKMCLYEIKNDFTWSL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L ++ G+G RVA VL+ + + I N + IA+I I+ +I Sbjct: 58 YGFKELEERKLFADLLNLNGIGPRVAFNVLNV-GFDKAINLIRDGNIEEIAKIEYINPRI 116 Query: 121 ASRIMTELKGKAIS 134 A I+ ELK K S Sbjct: 117 ARIIVEELKEKLSS 130 >gi|319776965|ref|YP_004136616.1| holliday junction ATP-dependent DNA helicase ruva [Mycoplasma fermentans M64] gi|319777203|ref|YP_004136854.1| holliday junction ATP-dependent DNA helicase ruva [Mycoplasma fermentans M64] gi|318038040|gb|ADV34239.1| Holliday junction ATP-dependent DNA helicase RuvA [Mycoplasma fermentans M64] gi|318038278|gb|ADV34477.1| Holliday junction ATP-dependent DNA helicase RuvA [Mycoplasma fermentans M64] Length = 145 Score = 63.6 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 4/134 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ KG I ++ + V Y + P K+ + + L Sbjct: 1 MVLYRKGKIVYKDGKNLIFESDNVGYYVTFPDN---KSIKLNQELKMCLYEIKNDFTWSL 57 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L ++ G+G RVA VL+ + + I N + IA+I I+ +I Sbjct: 58 YGFKELEERKLFADLLNLNGIGPRVAFNVLNV-GFDKAINLIRDGNIEEIAKIEYINPRI 116 Query: 121 ASRIMTELKGKAIS 134 A I+ ELK K S Sbjct: 117 ARIIVEELKEKLSS 130 >gi|312969901|ref|ZP_07784084.1| holliday junction ATP-dependent DNA helicase ruvA [Escherichia coli 1827-70] gi|310338186|gb|EFQ03275.1| holliday junction ATP-dependent DNA helicase ruvA [Escherichia coli 1827-70] Length = 76 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 3/77 (3%) Query: 128 LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKK 187 +K + L + + + + A++ALV LGY +A+ V + + Sbjct: 1 MKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRMVSKIAR- 59 Query: 188 EKNIADDSQIIRLALRA 204 A +IR ALRA Sbjct: 60 --PDASSETLIREALRA 74 >gi|238809746|dbj|BAH69536.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 154 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 4/134 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 M+ KG I ++ + V Y + P L + + L Sbjct: 10 MVLYRKGKIVYKDGKNLIFESDNVGYYVTFPDNKRIKL---NQELKMCLYEIKNDFTWSL 66 Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120 +GF +R+ F L ++ G+G RVA VL+ + + I N + IA+I I+ +I Sbjct: 67 YGFKELEERKLFADLLNLNGIGPRVAFNVLNV-GFDKAINLIRDGNIEEIAKIEYINPRI 125 Query: 121 ASRIMTELKGKAIS 134 A I+ ELK K S Sbjct: 126 ARIIVEELKEKLSS 139 >gi|332756761|gb|EGJ87108.1| ruvA, C-terminal domain protein [Shigella flexneri 4343-70] Length = 76 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 3/77 (3%) Query: 128 LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKK 187 +K + L + + + + A++ALV LGY +A+ V + + Sbjct: 1 MKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRMVSKIAR- 59 Query: 188 EKNIADDSQIIRLALRA 204 +IR ALRA Sbjct: 60 --PDTSSETLIREALRA 74 >gi|323165016|gb|EFZ50806.1| ruvA, C-terminal domain protein [Shigella sonnei 53G] Length = 76 Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 3/77 (3%) Query: 128 LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKK 187 +K + L + + + + A++ALV LGY +A+ V + + Sbjct: 1 MKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRMVSKIART 60 Query: 188 EKNIADDSQIIRLALRA 204 + A +IR ALRA Sbjct: 61 D---ASSETLIREALRA 74 >gi|50365239|ref|YP_053664.1| holliday junction DNA helicase ruvA [Mesoplasma florum L1] gi|50363795|gb|AAT75780.1| holliday junction DNA helicase ruvA [Mesoplasma florum L1] Length = 182 Score = 62.0 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 72/199 (36%), Gaps = 28/199 (14%) Query: 9 IEGLYEDYVLIDVQGVC-YIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDL 67 I ++Y+ ++ Q Y Y K LF+ H + + F S Sbjct: 9 INSKDDNYLYVEYQNKGEYFSYLTKDNF----KNEKNIKLFIVDHNTEFENVEIVFRSRD 64 Query: 68 DRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTE 127 +R F L ++ VG + + +L+ + E ++ I + + +A++ GI A I+ E Sbjct: 65 ERNLFKELVKIKTVGLKTSFYLLNNFSFEEFIKMIEEYDIEKLAKLKGIGNYTAKLIIEE 124 Query: 128 LKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKK 187 L+ + I++LV LG+ + +V Sbjct: 125 LQKHFFK-------------------NKITQKKEKIITSLVKLGFSYKTIMKNIANV--- 162 Query: 188 EKNIADDSQIIRLALRAIS 206 N+ +I ++ + IS Sbjct: 163 -DNLLSVDEITKIVMEQIS 180 >gi|207110462|ref|ZP_03244624.1| Holliday junction DNA helicase motor protein [Helicobacter pylori HPKX_438_CA4C1] Length = 102 Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 47/124 (37%), Gaps = 23/124 (18%) Query: 82 GARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQ 141 G R+A+ +LS + E I + K + Q+PGI K+A +IM +L G I Sbjct: 1 GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQ------- 53 Query: 142 DMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLA 201 AL +LG+ + + VLK K I+ A Sbjct: 54 ------------DENKPARNEVFLALESLGFKSAE----INKVLKTLKPHLSIEAAIKEA 97 Query: 202 LRAI 205 L+ + Sbjct: 98 LQQL 101 >gi|53987370|gb|AAV27571.1| branch migration of holliday structures; repair [Mycoplasma hyopneumoniae 232] Length = 154 Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 38/152 (25%), Positives = 60/152 (39%), Gaps = 21/152 (13%) Query: 71 WFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKG 130 F L S+QGVG + A+ L+ L+ I + K +A+IP +S K A +I+ E + Sbjct: 1 MFEDLISIQGVGPKTAISALNS-GMQNLINLIAANDWKTLAKIPYLSEKNAKQIVFEFQK 59 Query: 131 KAISLSSVVQQDMSCVNKEQ-----------AHICSMPSFAINAISA-----LVNLGYGQ 174 K + + N E A I S + +A L LG+ Sbjct: 60 KYERFNENHKNQTEETNPETQEKELEKEDDLADITIQKSNLEDKTAANLEDTLKMLGFKP 119 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 Q A+ V E + +I A++ IS Sbjct: 120 RQIDYALTKVEPNE----NFENLIENAIKIIS 147 >gi|308187173|ref|YP_003931304.1| hypothetical protein Pvag_1667 [Pantoea vagans C9-1] gi|308057683|gb|ADO09855.1| hypothetical protein Pvag_1667 [Pantoea vagans C9-1] Length = 36 Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats. Identities = 14/35 (40%), Positives = 20/35 (57%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTL 35 MIG+++GNI VL++ GV Y IY P+ Sbjct: 1 MIGRLRGNILEKQPPLVLLEAHGVGYEIYMPMTCF 35 >gi|2160258|dbj|BAA01034.1| RuvA [Escherichia coli] Length = 29 Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 12/29 (41%), Positives = 18/29 (62%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIY 29 MIG+++G I VLI+V GV Y ++ Sbjct: 1 MIGRLRGIIIEKQPPLVLIEVGGVGYEVH 29 >gi|2078399|gb|AAB54026.1| unknown [Mycobacterium tuberculosis] Length = 94 Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 9/32 (28%), Positives = 17/32 (53%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPI 32 MI ++G + + D+V+I+ GV Y + Sbjct: 6 MIASVRGEVLEVALDHVVIEAAGVGYRVNATP 37 >gi|145628662|ref|ZP_01784462.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae 22.1-21] gi|144979132|gb|EDJ88818.1| Holliday junction DNA helicase motor protein [Haemophilus influenzae 22.1-21] Length = 81 Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 4/82 (4%) Query: 124 IMTELKGKAISL-SSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVV 182 ++ ELKGK + S + + + + S + AISAL+ LGY +A V Sbjct: 1 MLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESSSDEAISALIALGYKPAEAEKMVK 60 Query: 183 SVLKKEKNIADDSQIIRLALRA 204 V K E Q+IR AL+A Sbjct: 61 RVAKPE---LTSEQVIREALKA 79 >gi|330896129|gb|EGH28350.1| Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. japonica str. M301072PT] Length = 43 Score = 50.5 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 17/45 (37%), Positives = 31/45 (68%), Gaps = 3/45 (6%) Query: 161 INAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 +A+SAL++LGY +A+ AV ++ +K+ + AD +IR AL+ + Sbjct: 1 SDAVSALISLGYKPQEASKAVSAIKEKDLSSAD---LIRRALKGM 42 >gi|24987362|pdb|1IXS|A Chain A, Structure Of Ruvb Complexed With Ruva Domain Iii Length = 62 Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%) Query: 151 AHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 A A A+ AL LG+ + QA V+ +L + A +I+ AL+ + Sbjct: 8 AGEKVESEAAEEAVMALAALGFKEAQARAVVLDLLAQNPK-ARAQDLIKEALKRL 61 >gi|255030452|ref|ZP_05302403.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes LO28] Length = 36 Score = 48.2 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 1/37 (2%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSC 37 M IKG + + +Y++++ + Y I S Sbjct: 1 MYDYIKGTVTTITPEYIVVEAGQIGYQI-ITGNPFSF 36 >gi|291533988|emb|CBL07101.1| RuvA, C-terminal domain [Megamonas hypermegale ART12/1] Length = 51 Score = 48.2 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%) Query: 158 SFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 A AL++LGY + + + SVLKK N+ + II+ AL+ +S Sbjct: 5 DMYEEATQALLSLGYTKPE----INSVLKKAGNMTNTEDIIKFALKELS 49 >gi|205374297|ref|ZP_03227096.1| hypothetical protein Bcoam_14304 [Bacillus coahuilensis m4-4] Length = 55 Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 1/43 (2%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDF 44 IKG +E + +YV+++ + Y +Y P S Sbjct: 14 YEYIKGTVEFIGPEYVVVEAGDIGYQLYTP-NPFSFSPHEKSH 55 >gi|328471586|gb|EGF42464.1| Holliday junction DNA helicase RuvA [Lactobacillus rhamnosus MTCC 5462] Length = 114 Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 7/121 (5%) Query: 73 MLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKA 132 L SV G+G + A+ +L+ +++ L +I + K + + PGI K A++I+ +LKGK Sbjct: 1 NQLLSVTGIGPKSALAILANVSSGGLATAIAQDDVKFLTKFPGIGKKTAAQIILDLKGKI 60 Query: 133 ISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIA 192 + + + + A + A+ A+ GY Q A + LK Sbjct: 61 TTDAQPAAATIMPTADQVAPELADALAALVAL------GYTQR-AVDGITDALKAFDATT 113 Query: 193 D 193 Sbjct: 114 T 114 >gi|293395809|ref|ZP_06640091.1| crossover junction endoribonuclease subunit A [Serratia odorifera DSM 4582] gi|291421746|gb|EFE94993.1| crossover junction endoribonuclease subunit A [Serratia odorifera DSM 4582] Length = 77 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 4/78 (5%) Query: 128 LKGKAISLSSVVQQDMSCVN-KEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLK 186 +K + L+ + + S ++ A A SALV LGY +A+ V + K Sbjct: 1 MKDRFKGLNGDLFNNSSEISLPASATQTPEADAEAEAASALVALGYKPQEASRMVSKIAK 60 Query: 187 KEKNIADDSQIIRLALRA 204 AD +IR ALRA Sbjct: 61 ---PGADCETLIRDALRA 75 >gi|255027600|ref|ZP_05299586.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes FSL J2-003] Length = 60 Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 2/60 (3%) Query: 146 VNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 V E + + A+ AL LGY + + + K+ I+LAL+ + Sbjct: 1 VAPENDMVAGLSPQLEEAVLALEALGYSTRELKKVIPKLAKEA--DLTSDAYIKLALQLM 58 >gi|169836512|ref|ZP_02869700.1| Holliday junction DNA helicase RuvA [candidate division TM7 single-cell isolate TM7a] Length = 76 Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 42/71 (59%) Query: 46 TLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQ 105 + T++++D I L+GF + +R+ F L S+ GVG ++A+ +LS E++E + Sbjct: 5 KIIYFTNVKEDDISLYGFKTQNERELFKALISISGVGPKLAIAILSTFNMREIIEIVTED 64 Query: 106 NSKVIAQIPGI 116 SK++ + G+ Sbjct: 65 ESKILQEFQGL 75 >gi|255030240|ref|ZP_05302191.1| Holliday junction DNA helicase RuvA [Listeria monocytogenes LO28] Length = 85 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 40/83 (48%) Query: 72 FMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGK 131 F L SV G+G + A+ +++ L+ +I ++ + + P + K A +I+ +LKGK Sbjct: 1 FKKLLSVSGIGPKSALAIIASGDVVPLISAIESEDDVYLTKFPSVGKKTARQIILDLKGK 60 Query: 132 AISLSSVVQQDMSCVNKEQAHIC 154 + + ++ N A + Sbjct: 61 LADVVASEIVYVAPENDMVAGLS 83 >gi|289808763|ref|ZP_06539392.1| Holliday junction DNA helicase RuvA [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 36 Score = 43.2 bits (100), Expect = 0.021, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 3/39 (7%) Query: 161 INAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIR 199 A++ALV LGY +A+ V + + A +IR Sbjct: 1 QEAVAALVALGYKPQEASRMVSKIAR---PDASSETLIR 36 >gi|160876640|ref|YP_001555956.1| RuvA domain-containing protein [Shewanella baltica OS195] gi|160862162|gb|ABX50696.1| RuvA domain protein [Shewanella baltica OS195] gi|315268839|gb|ADT95692.1| RuvA domain protein [Shewanella baltica OS678] Length = 307 Score = 41.6 bits (96), Expect = 0.063, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 3/54 (5%) Query: 152 HICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 I +AI AL++LGY +A V LK+ +II+ A+ ++ Sbjct: 255 SIIDFKETQNDAIHALISLGYSSSKAKEVV---LKQSNQRLTAEEIIKKAIISL 305 >gi|254775922|ref|ZP_05217438.1| Holliday junction DNA helicase RuvA [Mycobacterium avium subsp. avium ATCC 25291] Length = 47 Score = 41.6 bits (96), Expect = 0.072, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%) Query: 163 AISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + ALV LG+ QA A VL E A S +R AL + Sbjct: 2 VVEALVGLGFAAKQAEEATDKVLAAEPE-AGTSGALRAALSLL 43 >gi|289579052|ref|YP_003477679.1| Tn7-like transposition protein C [Thermoanaerobacter italicus Ab9] gi|289528765|gb|ADD03117.1| Tn7-like transposition protein C [Thermoanaerobacter italicus Ab9] Length = 553 Score = 40.9 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 27/57 (47%) Query: 150 QAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 + ++ S AI L+ L +A AV V++ E D S+++ A++ +S Sbjct: 440 EEEKEALLSIKEQAIIKLLELNIEAKKAQKAVEQVIEAEGEKIDVSELVVKAIKLLS 496 >gi|297205884|ref|ZP_06923279.1| S1 RNA binding domain protein [Lactobacillus jensenii JV-V16] gi|297149010|gb|EFH29308.1| S1 RNA binding domain protein [Lactobacillus jensenii JV-V16] Length = 292 Score = 39.7 bits (91), Expect = 0.22, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 1/51 (1%) Query: 1 MIGKI-KGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE 50 M+G I KG + ++ + V GV Y + T + ++GD F+ Sbjct: 1 MLGTIQKGKVIDKNDEAYYVQVNGVTYELNKLEVTQEQMPQLGDIVQGFIY 51 >gi|293384504|ref|ZP_06630375.1| holliday junction DNA helicase RuvA [Enterococcus faecalis R712] gi|291078160|gb|EFE15524.1| holliday junction DNA helicase RuvA [Enterococcus faecalis R712] Length = 59 Score = 38.9 bits (89), Expect = 0.42, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 2/53 (3%) Query: 153 ICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + + A+ AL LGY + + + D + AL+ + Sbjct: 6 VTTSNQALAEALEALSALGYSDREIKRITKQLEALGETTTDV--YLSNALKFM 56 >gi|269793189|ref|YP_003318093.1| methyl-accepting chemotaxis sensory transducer [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100824|gb|ACZ19811.1| methyl-accepting chemotaxis sensory transducer [Thermanaerovibrio acidaminovorans DSM 6589] Length = 433 Score = 38.9 bits (89), Expect = 0.46, Method: Composition-based stats. Identities = 10/75 (13%), Positives = 33/75 (44%) Query: 132 AISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNI 191 S+++ ++ + + I + +S L + + ++ A SV ++ + + Sbjct: 343 MESVAATSEEQAAASQEIAKSIDEAARSTVEVVSGLGVIQHSAEETAKAAESVAREAEKL 402 Query: 192 ADDSQIIRLALRAIS 206 ++ ++ AL++ S Sbjct: 403 TSGAEALKEALKSFS 417 >gi|293389009|ref|ZP_06633491.1| holliday junction DNA helicase RuvA [Enterococcus faecalis S613] gi|291081628|gb|EFE18591.1| holliday junction DNA helicase RuvA [Enterococcus faecalis S613] Length = 59 Score = 38.5 bits (88), Expect = 0.49, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 2/53 (3%) Query: 153 ICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + + A+ AL LGY + + + D + AL+ + Sbjct: 6 VTTSNQALAEALEALSALGYSDREIKRITKQLEALGETTTDV--YLSNALKFM 56 >gi|307718783|ref|YP_003874315.1| 30S ribosomal protein S1 [Spirochaeta thermophila DSM 6192] gi|306532508|gb|ADN02042.1| 30S ribosomal protein S1 [Spirochaeta thermophila DSM 6192] Length = 800 Score = 38.5 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 5/47 (10%) Query: 5 IKGNIEGLYEDYVLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFV 49 ++G + + +DYV +D V Y PI L K+GD + + Sbjct: 265 VEGTVIEINKDYVYLD---VGYKSEGQVPISDFDTLPKVGDTVPVVI 308 >gi|315185614|gb|EFU19382.1| cytidylate kinase [Spirochaeta thermophila DSM 6578] Length = 800 Score = 38.5 bits (88), Expect = 0.55, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 5/47 (10%) Query: 5 IKGNIEGLYEDYVLIDVQGVCY--IIYCPIRTLSCLGKIGDFCTLFV 49 ++G + + +DYV +D V Y PI L K+GD + + Sbjct: 265 VEGTVIEINKDYVYLD---VGYKSEGQVPISDFDTLPKVGDTVPVVI 308 >gi|256851001|ref|ZP_05556390.1| RNA-binding protein [Lactobacillus jensenii 27-2-CHN] gi|260661213|ref|ZP_05862127.1| RNA-binding protein [Lactobacillus jensenii 115-3-CHN] gi|282932046|ref|ZP_06337504.1| conserved virulence factor B [Lactobacillus jensenii 208-1] gi|256616063|gb|EEU21251.1| RNA-binding protein [Lactobacillus jensenii 27-2-CHN] gi|260548150|gb|EEX24126.1| RNA-binding protein [Lactobacillus jensenii 115-3-CHN] gi|281303813|gb|EFA95957.1| conserved virulence factor B [Lactobacillus jensenii 208-1] Length = 292 Score = 38.5 bits (88), Expect = 0.57, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 1/51 (1%) Query: 1 MIGKIK-GNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE 50 M+G I+ G + ++ + V GV Y + T + ++GD F+ Sbjct: 1 MLGTIQEGKVIDKNDEAYYVQVNGVTYELNKLEVTQEQMPQLGDIVQGFIY 51 >gi|288574755|ref|ZP_06393112.1| two component transcriptional regulator, winged helix family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570496|gb|EFC92053.1| two component transcriptional regulator, winged helix family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 230 Score = 38.5 bits (88), Expect = 0.62, Method: Composition-based stats. Identities = 7/30 (23%), Positives = 15/30 (50%) Query: 2 IGKIKGNIEGLYEDYVLIDVQGVCYIIYCP 31 I ++ + D +++ V+GV Y + C Sbjct: 198 IKYLRDKLREHKMDSIVVTVRGVGYKVQCS 227 >gi|207110212|ref|ZP_03244374.1| Holliday junction DNA helicase motor protein [Helicobacter pylori HPKX_438_CA4C1] Length = 77 Score = 38.5 bits (88), Expect = 0.62, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 MI + G +E + V I+VQGV Y + +RT S L + G L + +R+D L Sbjct: 1 MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMRT-SALLEAGQKVRLKILQVIREDAHLL 59 Query: 61 FGFLSDLDRQWFMLLQSV 78 +GFL + ++ F L + Sbjct: 60 YGFLEESEKILFERLLKI 77 >gi|157874437|ref|XP_001685702.1| hypothetical protein [Leishmania major strain Friedlin] gi|68128774|emb|CAJ08907.1| putative enolase [Leishmania major strain Friedlin] Length = 608 Score = 38.2 bits (87), Expect = 0.63, Method: Composition-based stats. Identities = 17/154 (11%), Positives = 47/154 (30%), Gaps = 4/154 (2%) Query: 46 TLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQ 105 V + + + +F + V ++ L + Sbjct: 13 EFHVSGVLTEAARACVSAHPTDVKDFFSRY--FREVAGGTSVKALHHNEVLSAAGETAIT 70 Query: 106 NSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS 165 + + P +S+ + + +G+ + + + E ++ + A+S Sbjct: 71 FTMELCVGPEVSVTTGDLLASADRGRDGEARASLAASEGATDAEGNSYSAIQTTCAAAVS 130 Query: 166 ALVNLGYGQD--QATTAVVSVLKKEKNIADDSQI 197 L+ LGY + + +A+ + L S + Sbjct: 131 KLLQLGYAEPQHEWDSALRAALSTSPLANGTSAL 164 >gi|312136000|ref|YP_004003338.1| tn7-like transposition protein c [Caldicellulosiruptor owensensis OL] gi|311776051|gb|ADQ05538.1| Tn7-like transposition protein C [Caldicellulosiruptor owensensis OL] Length = 553 Score = 38.2 bits (87), Expect = 0.71, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 26/52 (50%) Query: 155 SMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 + S AI L+ L +A AV V++ E ++ S+++ A++ +S Sbjct: 445 AALSVKEQAIIKLLELNIEAKKAQKAVEQVIEAEGEKSNVSELVVKAIQLLS 496 >gi|322494469|emb|CBZ29771.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 608 Score = 38.2 bits (87), Expect = 0.74, Method: Composition-based stats. Identities = 17/163 (10%), Positives = 51/163 (31%), Gaps = 5/163 (3%) Query: 46 TLFVETHMRQDQIRLFGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQ 105 + + + + +F + V ++ L + Sbjct: 13 EFHISGILTEAARACVSAHPTDVKDFFSRY--FREVAEGTSVKALHHNEVLSAAGETAVT 70 Query: 106 NSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAIS 165 + + P +S+ + +G+ + + + + E + + +S Sbjct: 71 FTVELCVGPEVSVTTGDLLSFADRGRDGEVRASLAASEGATDAEGNSYSVIQTTCAAVVS 130 Query: 166 ALVNLGY--GQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 L+ LGY Q + +A+ + L +A + ++ L ++ Sbjct: 131 KLLQLGYAEPQREWDSALRTALSPSP-LASGASALQWVLSIMA 172 >gi|169335926|ref|ZP_02863119.1| hypothetical protein ANASTE_02361 [Anaerofustis stercorihominis DSM 17244] gi|169258664|gb|EDS72630.1| hypothetical protein ANASTE_02361 [Anaerofustis stercorihominis DSM 17244] Length = 256 Score = 38.2 bits (87), Expect = 0.81, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 54/174 (31%), Gaps = 21/174 (12%) Query: 52 HMRQDQIRLFGFLSDLDRQWF-----MLLQSVQGVGARVAMGVLSRITATELVESIILQN 106 + D+ + S + F L S T + + Sbjct: 53 YSTSDRFKCGLTYSSHEETHFPDNFNNKLLSYNDT-VENEYDESPICTFGDQGPCVYKDR 111 Query: 107 SKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKE------QAHICSMPSFA 160 I I G+ ++ + + ++ GK ++ + + + Q + Sbjct: 112 YLTIVPINGLGERMGTLLFSKYGGKFNDDEIILCEYSAAIVVMELLRYVQDQRKKNDADV 171 Query: 161 INAISALVNLGYGQDQATTAVVSVLKKEK-----NIADDSQIIRL----ALRAI 205 A AL L Y + +A + +K E IA ++QI R ALR + Sbjct: 172 AAAKMALSTLSYSEVEAVRMIFKEVKDEGLVVASKIATEAQITRSVVSNALRKL 225 >gi|307266062|ref|ZP_07547608.1| Tn7-like transposition protein C [Thermoanaerobacter wiegelii Rt8.B1] gi|306918931|gb|EFN49159.1| Tn7-like transposition protein C [Thermoanaerobacter wiegelii Rt8.B1] Length = 554 Score = 37.8 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 147 NKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 +++ + S AI+ L+ L +A AV V++ E D S++ A++ +S Sbjct: 438 QRQEEEKKASLSIKEQAITKLLELNIEAKKAQKAVEQVMEAEGEKIDVSELAVKAIQLLS 497 >gi|254500672|ref|ZP_05112823.1| Glycosyl hydrolase family 9 [Labrenzia alexandrii DFL-11] gi|222436743|gb|EEE43422.1| Glycosyl hydrolase family 9 [Labrenzia alexandrii DFL-11] Length = 557 Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 56/165 (33%), Gaps = 9/165 (5%) Query: 32 IRTLSCLGKIGDFCTLFVETHMRQDQIRLFGFLSDLDRQWFMLLQ----SVQGVGARVAM 87 +RT + K + L E + D + + +F LQ +V+G Sbjct: 147 LRTSYGIPKSSE--FLDPELYAGTDDLPDLLHEAIWTIDFFRRLQGPDGTVRGGIESAGH 204 Query: 88 GVLSRITATE-LVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCV 146 +L + E L + I+ +A E GK + + Sbjct: 205 PMLGTASFLETLPVFTYAPDISSTYTYAAIAGSLARH--LETYGKPDLAAVYLGSAFRAW 262 Query: 147 NKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNI 191 + +A + + +F +A++ LV GY + + LK+E Sbjct: 263 DAAEAGLSDIDAFYTDAVAGLVAGGYSNSEGWPEIRLKLKEEAET 307 >gi|257051367|ref|YP_003129200.1| hypothetical protein Huta_0279 [Halorhabdus utahensis DSM 12940] gi|256690130|gb|ACV10467.1| conserved hypothetical protein [Halorhabdus utahensis DSM 12940] Length = 174 Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 13/125 (10%), Positives = 36/125 (28%) Query: 81 VGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQ 140 VG + E + + + + + + + ++ + Sbjct: 5 VGCTDCSALWVIEGRPETSQCPRCGKRRQFDLLRKFAQTETADAARQARAAMLAERQDLG 64 Query: 141 QDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRL 200 + ++ ++ I+ L + G D+A A + +I+R Sbjct: 65 EAFDGLDSYAEMEAAVSEAVIDDDEYLESKGVDSDEAADAGRRATEGAGGSTSREEIVRA 124 Query: 201 ALRAI 205 AL + Sbjct: 125 ALVEL 129 >gi|46201468|ref|ZP_00208112.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 221 Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%) Query: 2 IGKIKGNIE-GLYEDYVLIDVQGVCYIIYC 30 I +++G +E +++ VQGV Y I Sbjct: 192 ISRLRGKLERSRKTPTLILTVQGVGYRINL 221 >gi|238855203|ref|ZP_04645522.1| conserved virulence factor B [Lactobacillus jensenii 269-3] gi|260664566|ref|ZP_05865418.1| RNA-binding protein [Lactobacillus jensenii SJ-7A-US] gi|282932503|ref|ZP_06337928.1| conserved virulence factor B [Lactobacillus jensenii 208-1] gi|313471968|ref|ZP_07812460.1| S1 RNA binding domain protein [Lactobacillus jensenii 1153] gi|238832095|gb|EEQ24413.1| conserved virulence factor B [Lactobacillus jensenii 269-3] gi|260561631|gb|EEX27603.1| RNA-binding protein [Lactobacillus jensenii SJ-7A-US] gi|281303452|gb|EFA95629.1| conserved virulence factor B [Lactobacillus jensenii 208-1] gi|313449039|gb|EFR61307.1| S1 RNA binding domain protein [Lactobacillus jensenii 1153] Length = 292 Score = 36.6 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 1/51 (1%) Query: 1 MIGKI-KGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVE 50 M+G I KG + ++ + V GV Y + T + ++GD F+ Sbjct: 1 MLGTIQKGKVIDKNDEAYYVQVDGVTYELNKLEVTQEQMPQLGDIVQGFIY 51 >gi|165933332|ref|YP_001650121.1| 30S ribosomal protein S1 [Rickettsia rickettsii str. Iowa] gi|165908419|gb|ABY72715.1| SSU ribosomal protein S1P [Rickettsia rickettsii str. Iowa] Length = 568 Score = 36.2 bits (82), Expect = 2.5, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 9/61 (14%) Query: 5 IKGNIEGLYEDYVLIDVQ----GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 +KG + + D +++DV G P L ++GD +F+ET ++ + Sbjct: 42 VKGQVIEIKNDIIIVDVGLKNEG-----RIPKSEFLALPEVGDVVEVFIETIEGRNGRTI 96 Query: 61 F 61 Sbjct: 97 L 97 >gi|323452946|gb|EGB08819.1| hypothetical protein AURANDRAFT_63816 [Aureococcus anophagefferens] Length = 1872 Score = 36.2 bits (82), Expect = 2.6, Method: Composition-based stats. Identities = 13/110 (11%), Positives = 32/110 (29%), Gaps = 2/110 (1%) Query: 90 LSRITATELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKE 149 + E++ ++K + P + +++ L K + ++ + Sbjct: 1050 CNDGEIKEILFKFSHGDAKRATKPPPKGTRAVTKLRNLLLDKFEGMGGNMRVAVKHTLGH 1109 Query: 150 QAHICSMPSFAINAISALVNL--GYGQDQATTAVVSVLKKEKNIADDSQI 197 S + AL L G DQ ++ + +I Sbjct: 1110 YDADGSGELERGECVKALSGLLPGITDDQIGALFDTIDADKSETLTVDEI 1159 >gi|257462986|ref|ZP_05627390.1| hypothetical protein FuD12_03991 [Fusobacterium sp. D12] Length = 53 Score = 36.2 bits (82), Expect = 2.8, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 2/52 (3%) Query: 154 CSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 S ++A + SAL NLGY + + + + + ++ L+ + Sbjct: 1 NSAVTWAEDIASALENLGYAKKEIEQLLQQ--ETWVEYQSLEEAMKGILKKM 50 >gi|317126956|ref|YP_004093238.1| RuvA domain protein [Bacillus cellulosilyticus DSM 2522] gi|315471904|gb|ADU28507.1| RuvA domain protein [Bacillus cellulosilyticus DSM 2522] Length = 536 Score = 36.2 bits (82), Expect = 2.8, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 26/64 (40%) Query: 143 MSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLAL 202 M+ + + +A L LG+ D A AV + + + + SQI++ A Sbjct: 425 MNSLQEGAKRKNEQLQLIDDATFRLGMLGFNNDVAVKAVQKAISENNQLEEVSQIVKDAF 484 Query: 203 RAIS 206 ++ Sbjct: 485 LLLN 488 >gi|217076392|ref|YP_002334108.1| SufB/sufD domain protein [Thermosipho africanus TCF52B] gi|217036245|gb|ACJ74767.1| SufB/sufD domain protein [Thermosipho africanus TCF52B] Length = 374 Score = 35.8 bits (81), Expect = 3.4, Method: Composition-based stats. Identities = 11/79 (13%), Positives = 31/79 (39%), Gaps = 4/79 (5%) Query: 130 GKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATT-AVVSVLKKE 188 K + ++ + +H S +AI L++ G+ + +A + + + + Sbjct: 293 SKDSKMEAIPSLLVDENEVTASHAASSAPLDEDAIFYLMSRGFNRKEAKSFILNGIFENL 352 Query: 189 KNIADD---SQIIRLALRA 204 N ++++ AL+ Sbjct: 353 INELSVFGLEEVVKNALKK 371 >gi|302765759|ref|XP_002966300.1| hypothetical protein SELMODRAFT_86216 [Selaginella moellendorffii] gi|300165720|gb|EFJ32327.1| hypothetical protein SELMODRAFT_86216 [Selaginella moellendorffii] Length = 779 Score = 35.8 bits (81), Expect = 3.7, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 3/90 (3%) Query: 109 VIAQIPGISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALV 168 + P + + A+ + + + D ++ +H S + NA+ ALV Sbjct: 603 MDMGFPRVRCEKAAIFTSNHGAEPAMEWLLSHMDDPDIDVPYSHSSSNANVDENAVQALV 662 Query: 169 NLGYGQDQATTAVVSVLKKEKNIADDSQII 198 LG+ D A A+ + D ++ I Sbjct: 663 ALGFSADLARKALRA---TGGRTEDAAEWI 689 >gi|282852795|ref|ZP_06262137.1| RuvA, C-terminal domain protein [Lactobacillus gasseri 224-1] gi|282556537|gb|EFB62157.1| RuvA, C-terminal domain protein [Lactobacillus gasseri 224-1] Length = 43 Score = 35.8 bits (81), Expect = 3.9, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%) Query: 164 ISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAI 205 + ALV LGY Q + + K +N AD I+ AL + Sbjct: 1 MLALVALGYTQKEVDRITPKLAKLPENTADG--YIKEALALL 40 >gi|55821228|ref|YP_139670.1| DNA replication protein dnaD [Streptococcus thermophilus LMG 18311] gi|55823140|ref|YP_141581.1| DNA replication protein dnaD [Streptococcus thermophilus CNRZ1066] gi|116627955|ref|YP_820574.1| DNA replication protein dnaD [Streptococcus thermophilus LMD-9] gi|55737213|gb|AAV60855.1| DNA replication protein dnaD [Streptococcus thermophilus LMG 18311] gi|55739125|gb|AAV62766.1| DNA replication protein dnaD [Streptococcus thermophilus CNRZ1066] gi|116101232|gb|ABJ66378.1| DNA replication protein DnaD [Streptococcus thermophilus LMD-9] gi|312278543|gb|ADQ63200.1| DNA replication protein DnaD [Streptococcus thermophilus ND03] Length = 232 Score = 35.5 bits (80), Expect = 4.2, Method: Composition-based stats. Identities = 20/139 (14%), Positives = 44/139 (31%), Gaps = 11/139 (7%) Query: 71 WFMLLQSVQGVGARVAMGVLSRIT--ATELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 F+ LQ+ +G + + TE+ +SI + + + +++ + Sbjct: 36 QFLYLQTTTQIGEVASSQIAQATGKTPTEVNKSITTLTEAGLLDFTTVKVNNEIKMVVDA 95 Query: 129 KGKAISLSSVVQQDMSCVNKEQAHICSMP---SFAINAISALVNLGYGQDQATTAVVSVL 185 L +V + S + AL L + + Sbjct: 96 SPALAVLDKLVSSENSTTGPVAGQPTNTQLIKQLTDELEQALGILN------PMVIEDLN 149 Query: 186 KKEKNIADDSQIIRLALRA 204 K+ + D ++IR AL+ Sbjct: 150 KEIQEEHTDPELIREALKE 168 >gi|291277253|ref|YP_003517025.1| 50S ribosomal protein L6 [Helicobacter mustelae 12198] gi|290964447|emb|CBG40297.1| 50S ribosomal protein L6 [Helicobacter mustelae 12198] Length = 178 Score = 35.5 bits (80), Expect = 4.5, Method: Composition-based stats. Identities = 6/19 (31%), Positives = 11/19 (57%) Query: 18 LIDVQGVCYIIYCPIRTLS 36 +++V GV Y + +TL Sbjct: 86 VLEVNGVGYKVAVSGKTLE 104 >gi|322419014|ref|YP_004198237.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320125401|gb|ADW12961.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 396 Score = 35.1 bits (79), Expect = 6.1, Method: Composition-based stats. Identities = 28/208 (13%), Positives = 80/208 (38%), Gaps = 16/208 (7%) Query: 6 KGNIEGLYEDYVLIDVQGV-----CYIIYCPIRTLSCLGKIG-DFCTLFVETHMRQDQIR 59 +G + + ++ V++D+ G+ Y ++ + L L I + L + +M + Sbjct: 9 RGRVLIIDDEKVILDLTGIILKNRGYQVFTALSALEGLETIEIERPELVLLDYMMPNMDG 68 Query: 60 LFGFLSDLDRQWFMLLQSVQGVGA-RVAMGVLSRITATELVESIILQN----SKVIAQIP 114 L + G G+ +A+ ++ + +++ Q+ + + ++ Sbjct: 69 LTALKEIKRLYPDTYVIMFTGKGSEEIAVELMKAGASDYILKPFNNQDLVERIESVLKLR 128 Query: 115 GISMKIASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQ 174 GI ++ ++ + + + ++ +++ E++ S + L +LGY Sbjct: 129 GIELQ--NKALLSERERLLAEIEDWNRELEARVHEKSEALSRAQAEVVQSEKLASLGYL- 185 Query: 175 DQATTAVVSVLKKEKNIADDSQIIRLAL 202 + + +IA Q+I+ L Sbjct: 186 --SAGMAHEIRNPLNSIALFVQLIKGGL 211 >gi|67459163|ref|YP_246787.1| 30S ribosomal protein S1 [Rickettsia felis URRWXCal2] gi|75536405|sp|Q4ULF1|RS1_RICFE RecName: Full=30S ribosomal protein S1 gi|67004696|gb|AAY61622.1| 30S ribosomal protein S1 [Rickettsia felis URRWXCal2] Length = 568 Score = 34.7 bits (78), Expect = 8.2, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 9/61 (14%) Query: 5 IKGNIEGLYEDYVLIDVQ----GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 +KG + + D V++DV G P L ++GD +F+E ++ + Sbjct: 42 VKGQVIEIKNDMVIVDVGLKNEG-----RIPKSEFLALPEVGDVVEVFIEKIEGRNGRTI 96 Query: 61 F 61 Sbjct: 97 L 97 >gi|51473703|ref|YP_067460.1| 30S ribosomal protein S1 [Rickettsia typhi str. Wilmington] gi|81390060|sp|Q68WL4|RS1_RICTY RecName: Full=30S ribosomal protein S1 gi|51460015|gb|AAU03978.1| 30S ribosomal protein S1 [Rickettsia typhi str. Wilmington] Length = 568 Score = 34.7 bits (78), Expect = 8.5, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 9/61 (14%) Query: 5 IKGNIEGLYEDYVLIDVQ----GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 +KG + + D +++DV G P L ++GD +F+E ++ + Sbjct: 42 VKGQVIEIKNDMIIVDVGLKNEG-----RIPKSEFLSLPEVGDVVEVFIEKIEGRNGRTI 96 Query: 61 F 61 Sbjct: 97 L 97 >gi|312862737|ref|ZP_07722977.1| DnaD domain protein [Streptococcus vestibularis F0396] gi|322516626|ref|ZP_08069540.1| DNA replication protein DnaD [Streptococcus vestibularis ATCC 49124] gi|311101597|gb|EFQ59800.1| DnaD domain protein [Streptococcus vestibularis F0396] gi|322124896|gb|EFX96320.1| DNA replication protein DnaD [Streptococcus vestibularis ATCC 49124] Length = 232 Score = 34.7 bits (78), Expect = 8.6, Method: Composition-based stats. Identities = 21/139 (15%), Positives = 44/139 (31%), Gaps = 11/139 (7%) Query: 71 WFMLLQSVQGVGARVAMGVLSRITAT--ELVESIILQNSKVIAQIPGISMKIASRIMTEL 128 F+ LQ+ +G + + T E+ +SI + I + ++ + Sbjct: 36 QFLYLQTTTQIGEVASSQIAQATGKTLTEVNKSITTLTEAGLLDFTTIKVNNEIEMVVDA 95 Query: 129 KGKAI---SLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVSVL 185 L S + V + + + AL L + + Sbjct: 96 SPALAVLDKLVSSEKPTTGPVVGQPTNTQLIKQLTDELEQALGILN------PMVIEDLN 149 Query: 186 KKEKNIADDSQIIRLALRA 204 K+ + D ++IR AL+ Sbjct: 150 KEIQEEHTDPELIREALKE 168 >gi|297840349|ref|XP_002888056.1| hypothetical protein ARALYDRAFT_893300 [Arabidopsis lyrata subsp. lyrata] gi|297333897|gb|EFH64315.1| hypothetical protein ARALYDRAFT_893300 [Arabidopsis lyrata subsp. lyrata] Length = 427 Score = 34.7 bits (78), Expect = 8.6, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 5/118 (4%) Query: 67 LDRQWFMLLQSVQGVGARVAMGVLSRITATEL-VESIILQNSKVIAQIPGISMKIASRIM 125 R F LL S Q V + +S +L + + + + G+S K Sbjct: 206 PQRLLFSLLISNQHVCCGKEIFEVSLRKVVDLGFDPTTSTFVEALCTVYGMSDKTIE--- 262 Query: 126 TELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTAVVS 183 E L V+ + K + + N+I + LG+ +D V Sbjct: 263 -EKVDVYKRLGFAVEDVWAMFKKWPLSLANSEKKVANSIETFLGLGFSRDDFVRIVKR 319 >gi|332308216|ref|YP_004436067.1| ATP-binding protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175545|gb|AEE24799.1| ATP-binding protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 530 Score = 34.7 bits (78), Expect = 8.8, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 40/113 (35%), Gaps = 4/113 (3%) Query: 97 ELVESIILQNSKVIAQIPGISMKIASRIMTELKGKAIS---LSSVVQQDMSCVNKEQAHI 153 EL + + K I I ++ E L + + + I Sbjct: 376 ELFRRVYQDDFKPIHPIMNALRSKNPELIAEYADLPQPQIVLKIASLNKSIIESNKASVI 435 Query: 154 CSMPSFAINAISALVNLGYGQDQATTAVVSVLKKEKNIADDSQIIRLALRAIS 206 +M + L+ +GY + A AV +V + ++ S ++ L ++ ++ Sbjct: 436 ETMEPVVQALLDCLIQIGYEKKVAQPAVEAVFSEHPSLNKKS-LLPLVIKLLA 487 >gi|34581621|ref|ZP_00143101.1| 30S ribosomal protein S1 [Rickettsia sibirica 246] gi|28263006|gb|EAA26510.1| 30S ribosomal protein S1 [Rickettsia sibirica 246] Length = 568 Score = 34.7 bits (78), Expect = 8.8, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 9/61 (14%) Query: 5 IKGNIEGLYEDYVLIDVQ----GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 +KG + + D +++DV G P L ++GD +F+E ++ + Sbjct: 42 VKGQVIEIKNDIIIVDVGLKNEG-----RIPKSEFLALPEVGDVVEVFIEKIEGRNGRTI 96 Query: 61 F 61 Sbjct: 97 L 97 >gi|239948027|ref|ZP_04699780.1| ribosomal protein S1 [Rickettsia endosymbiont of Ixodes scapularis] gi|239922303|gb|EER22327.1| ribosomal protein S1 [Rickettsia endosymbiont of Ixodes scapularis] Length = 568 Score = 34.7 bits (78), Expect = 8.8, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 9/61 (14%) Query: 5 IKGNIEGLYEDYVLIDVQ----GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 +KG + + D +++DV G P L ++GD +F+E ++ + Sbjct: 42 VKGQVIEIKNDMIIVDVGLKNEG-----RIPKSEFLALPEVGDVVEVFIEKIEGRNGRTI 96 Query: 61 F 61 Sbjct: 97 L 97 >gi|229586799|ref|YP_002845300.1| 30S ribosomal protein S1 [Rickettsia africae ESF-5] gi|228021849|gb|ACP53557.1| 30S ribosomal protein S1 [Rickettsia africae ESF-5] Length = 568 Score = 34.7 bits (78), Expect = 8.9, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 9/61 (14%) Query: 5 IKGNIEGLYEDYVLIDVQ----GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 +KG + + D +++DV G P L ++GD +F+E ++ + Sbjct: 42 VKGQVIEIKNDIIIVDVGLKNEG-----RIPKSEFLALPEVGDVVEVFIEKIEGRNGRTI 96 Query: 61 F 61 Sbjct: 97 L 97 >gi|15892670|ref|NP_360384.1| 30S ribosomal protein S1 [Rickettsia conorii str. Malish 7] gi|81528161|sp|Q92HM4|RS1_RICCN RecName: Full=30S ribosomal protein S1 gi|15619842|gb|AAL03285.1| 30S ribosomal protein S1 [Rickettsia conorii str. Malish 7] Length = 568 Score = 34.7 bits (78), Expect = 9.0, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 9/61 (14%) Query: 5 IKGNIEGLYEDYVLIDVQ----GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 +KG + + D +++DV G P L ++GD +F+E ++ + Sbjct: 42 VKGQVIEIKNDIIIVDVGLKNEG-----RIPKSEFLALPEVGDVVEVFIEKIEGRNGRTI 96 Query: 61 F 61 Sbjct: 97 L 97 >gi|15604379|ref|NP_220895.1| 30S ribosomal protein S1 [Rickettsia prowazekii str. Madrid E] gi|6226091|sp|Q9ZD28|RS1_RICPR RecName: Full=30S ribosomal protein S1 gi|3861071|emb|CAA14971.1| 30S RIBOSOMAL PROTEIN S1 (rpsA) [Rickettsia prowazekii] gi|292572134|gb|ADE30049.1| 30S ribosomal protein S1 [Rickettsia prowazekii Rp22] Length = 568 Score = 34.7 bits (78), Expect = 9.0, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 9/61 (14%) Query: 5 IKGNIEGLYEDYVLIDVQ----GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 +KG + + D +++DV G P L ++GD +F+E ++ + Sbjct: 42 VKGQVIEIKNDMIIVDVGLKNEG-----RIPKSEFLSLPEVGDVVEVFIEKIEGRNGRTI 96 Query: 61 F 61 Sbjct: 97 L 97 >gi|157964625|ref|YP_001499449.1| 30S ribosomal protein S1 [Rickettsia massiliae MTU5] gi|157844401|gb|ABV84902.1| 30S ribosomal protein S1 [Rickettsia massiliae MTU5] Length = 568 Score = 34.3 bits (77), Expect = 9.1, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 9/61 (14%) Query: 5 IKGNIEGLYEDYVLIDVQ----GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 +KG + + D +++DV G P L ++GD +F+E ++ + Sbjct: 42 VKGQVIEIKNDMIIVDVGLKNEG-----RIPKSEFLALPEVGDVVEVFIEKIEGRNGRTI 96 Query: 61 F 61 Sbjct: 97 L 97 >gi|238650580|ref|YP_002916432.1| 30S ribosomal protein S1 [Rickettsia peacockii str. Rustic] gi|238624678|gb|ACR47384.1| 30S ribosomal protein S1 [Rickettsia peacockii str. Rustic] Length = 568 Score = 34.3 bits (77), Expect = 9.4, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 9/61 (14%) Query: 5 IKGNIEGLYEDYVLIDVQ----GVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60 +KG + + D +++DV G P L ++GD +F+E ++ + Sbjct: 42 VKGQVIEIKNDIIIVDVGLKNEG-----RIPKSEFLALPEVGDVVEVFIEKIEGRNGRTI 96 Query: 61 F 61 Sbjct: 97 L 97 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.313 0.131 0.364 Lambda K H 0.267 0.0402 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,502,350,516 Number of Sequences: 14124377 Number of extensions: 51368420 Number of successful extensions: 345040 Number of sequences better than 10.0: 2114 Number of HSP's better than 10.0 without gapping: 2051 Number of HSP's successfully gapped in prelim test: 63 Number of HSP's that attempted gapping in prelim test: 338375 Number of HSP's gapped (non-prelim): 2213 length of query: 207 length of database: 4,842,793,630 effective HSP length: 133 effective length of query: 74 effective length of database: 2,964,251,489 effective search space: 219354610186 effective search space used: 219354610186 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.0 bits) S2: 78 (34.7 bits)